Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8012I13.3
        

               Conread position:
               1-251
               

               Cow position:
               chr1:102730496-102730747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               135, 52
               

               Conread position:
               1-252
               

               Cow position:
               chr1:68897010-68897257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               155, 19
               

               Conread position:
               1-262
               

               Cow position:
               chr1:7453179-7452917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               18, 201
               

               Conread position:
               1-267
               

               Cow position:
               chr1:21561282-21561010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               143, 22
               

               Conread position:
               1-272
               

               Cow position:
               chr1:38706589-38706861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               153, 92
               

               Conread position:
               1-272
               

               Cow position:
               chr1:95835533-95835805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               191
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               133, 52
               

               Conread position:
               1-367
               

               Cow position:
               chr1:90864020-90864393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               245
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               35, 53
               

               Conread position:
               1-384
               

               Cow position:
               chr1:55704980-55705367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 107
               

               Conread position:
               1-384
               

               Cow position:
               chr1:74083918-74084314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               279
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               47, 192
               

               Conread position:
               1-384
               

               Cow position:
               chr1:83072706-83072326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 72
               

               Conread position:
               2-251
               

               Cow position:
               chr1:23101933-23101691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               95, 21
               

               Conread position:
               2-378
               

               Cow position:
               chr1:96304715-96305088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               260
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               162, 26
               

               Conread position:
               3-329
               

               Cow position:
               chr1:5776413-5776078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               18, 178
               

               Conread position:
               3-352
               

               Cow position:
               chr1:77620813-77620459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               234
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               57, 183
               

               Conread position:
               3-384
               

               Cow position:
               chr1:1980852-1981231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 21
               

               Conread position:
               3-384
               

               Cow position:
               chr1:70094598-70094224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               246
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               153, 47
               

               Conread position:
               3-384
               

               Cow position:
               chr1:82337514-82337898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               256
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               28, 154
               

               Conread position:
               4-253
               

               Cow position:
               chr1:85339634-85339400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               4-279
               

               Cow position:
               chr1:1489141-1489415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               182
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               27, 185
               

               Conread position:
               4-384
               

               Cow position:
               chr1:10633302-10632931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               260
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               32, 19
               

               Conread position:
               5-269
               

               Cow position:
               chr1:99604929-99605190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               44, 89
               

               Conread position:
               5-384
               

               Cow position:
               chr1:85867859-85867481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               257
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               15, 49
               

               Conread position:
               6-377
               

               Cow position:
               chr1:76612873-76613237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               237
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               55, 31
               

               Conread position:
               7-263
               

               Cow position:
               chr1:69411442-69411697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               137, 15
               

               Conread position:
               7-384
               

               Cow position:
               chr1:78092296-78091915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 13
               

               Conread position:
               8-384
               

               Cow position:
               chr1:20104523-20104151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 139
               

               Conread position:
               9-269
               

               Cow position:
               chr1:72422152-72422412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               33, 14
               

               Conread position:
               10-176
               

               Cow position:
               chr1:83066580-83066741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               126
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               144, 40
               

               Conread position:
               10-272
               

               Cow position:
               chr1:95153126-95152864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               179
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               139, 43
               

               Conread position:
               10-383
               

               Cow position:
               chr1:6102649-6103029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               243
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               139, 38
               

               Conread position:
               11-244
               

               Cow position:
               chr1:24793040-24792809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               143, 18
               

               Conread position:
               12-217
               

               Cow position:
               chr1:81615900-81615703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               137, 12
               

               Conread position:
               12-278
               

               Cow position:
               chr1:40212095-40212345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               8, 46
               

               Conread position:
               14-346
               

               Cow position:
               chr1:48213899-48214241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               243
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               124, 37
               

               Conread position:
               14-384
               

               Cow position:
               chr1:42175984-42175607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 143
               

               Conread position:
               16-379
               

               Cow position:
               chr1:48581378-48581019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               245
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               8, 22
               

               Conread position:
               17-273
               

               Cow position:
               chr1:87083878-87083621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               171
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               50, 62
               

               Conread position:
               19-282
               

               Cow position:
               chr1:49334151-49334409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               105, 29
               

               Conread position:
               20-384
               

               Cow position:
               chr1:14759109-14759469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               241
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               40, 77
               

               Conread position:
               21-378
               

               Cow position:
               chr1:64803853-64804213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               254
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               128, 168
               

               Conread position:
               22-234
               

               Cow position:
               chr1:102424044-102423825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               14, 82
               

               Conread position:
               22-384
               

               Cow position:
               chr1:72034684-72035043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               245
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               42, 73
               

               Conread position:
               23-384
               

               Cow position:
               chr1:74929464-74929831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               247
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               37, 166
               

               Conread position:
               25-275
               

               Cow position:
               chr1:99322336-99322572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               141, 25
               

               Conread position:
               25-282
               

               Cow position:
               chr1:24530742-24530485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               195
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               25, 120
               

               Conread position:
               25-288
               

               Cow position:
               chr1:83973002-83972741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               152, 5
               

               Conread position:
               25-355
               

               Cow position:
               chr1:17875478-17875799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               140, 29
               

               Conread position:
               26-239
               

               Cow position:
               chr1:43296479-43296692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               118, 27
               

               Conread position:
               26-373
               

               Cow position:
               chr1:63595814-63596160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               126, 27
               

               Conread position:
               26-384
               

               Cow position:
               chr1:54206579-54206936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 17
               

               Conread position:
               27-317
               

               Cow position:
               chr1:816159-816462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               214
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               113, 212
               

               Conread position:
               27-377
               

               Cow position:
               chr1:635440-635795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               244
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               7, 164
               

               Conread position:
               27-384
               

               Cow position:
               chr1:79591344-79590987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               254
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               20, 40
               

               Conread position:
               27-385
               

               Cow position:
               chr1:43352417-43352775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 23
               

               Conread position:
               27-401
               

               Cow position:
               chr1:46030132-46030489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               245
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               100, 32
               

               Conread position:
               28-249
               

               Cow position:
               chr1:58420435-58420220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               136, 110
               

               Conread position:
               28-331
               

               Cow position:
               chr1:71770072-71770383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               119, 24
               

               Conread position:
               28-332
               

               Cow position:
               chr1:67919364-67919067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               236, 29
               

               Conread position:
               28-368
               

               Cow position:
               chr1:648563-648223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               60, 25
               

               Conread position:
               29-331
               

               Cow position:
               chr1:28058731-28059033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               125, 24
               

               Conread position:
               29-365
               

               Cow position:
               chr1:38419259-38418934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               115, 20
               

               Conread position:
               29-381
               

               Cow position:
               chr1:55819273-55818945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               242
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               14, 69
               

               Conread position:
               29-384
               

               Cow position:
               chr1:5023501-5023873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               101, 28
               

               Conread position:
               29-384
               

               Cow position:
               chr1:31272210-31272558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               52, 28
               

               Conread position:
               29-384
               

               Cow position:
               chr1:49433022-49433379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               243
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               33, 261
               

               Conread position:
               29-384
               

               Cow position:
               chr1:56477821-56477473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               235, 98
               

               Conread position:
               29-384
               

               Cow position:
               chr1:70227455-70227810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               118, 158
               

               Conread position:
               29-384
               

               Cow position:
               chr1:86279653-86279294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               111, 130
               

               Conread position:
               29-384
               

               Cow position:
               chr1:97954247-97954576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               235, 98
               

               Conread position:
               30-384
               

               Cow position:
               chr1:46035709-46036077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               252
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               10, 36
               

               Conread position:
               30-384
               

               Cow position:
               chr1:97611438-97611770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               238
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               150, 56
               

               Conread position:
               30-387
               

               Cow position:
               chr1:65028756-65028409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               255
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               32, 57
               

               Conread position:
               31-228
               

               Cow position:
               chr1:42797108-42796915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               108, 22
               

               Conread position:
               31-234
               

               Cow position:
               chr1:90879507-90879704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               31-238
               

               Cow position:
               chr1:79178863-79178656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               118, 22
               

               Conread position:
               31-251
               

               Cow position:
               chr1:69378368-69378584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               124, 20
               

               Conread position:
               31-283
               

               Cow position:
               chr1:27959312-27959568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               21, 195
               

               Conread position:
               31-290
               

               Cow position:
               chr1:852408-852145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               33, 157
               

               Conread position:
               31-317
               

               Cow position:
               chr1:10029971-10030258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               97, 19
               

               Conread position:
               31-347
               

               Cow position:
               chr1:73584177-73584491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               223
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               123, 16
               

               Conread position:
               31-365
               

               Cow position:
               chr1:38277793-38278132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               57, 33
               

               Conread position:
               31-368
               

               Cow position:
               chr1:71399528-71399184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               232
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               116, 146
               

               Conread position:
               31-378
               

               Cow position:
               chr1:6304640-6304974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               9, 100
               

               Conread position:
               31-378
               

               Cow position:
               chr1:43357770-43358123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               55, 22
               

               Conread position:
               31-379
               

               Cow position:
               chr1:41137918-41138244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               31-379
               

               Cow position:
               chr1:81477629-81477981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               243
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               113, 323
               

               Conread position:
               31-384
               

               Cow position:
               chr1:23186570-23186914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               235
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               228, 18
               

               Conread position:
               31-384
               

               Cow position:
               chr1:33206640-33206988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               246
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               113, 234
               

               Conread position:
               31-384
               

               Cow position:
               chr1:55230206-55229867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               228, 33
               

               Conread position:
               31-384
               

               Cow position:
               chr1:61885150-61884802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 124
               

               Conread position:
               31-384
               

               Cow position:
               chr1:62519604-62519240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 162
               

               Conread position:
               31-384
               

               Cow position:
               chr1:70344274-70343924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               237
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               105, 23
               

               Conread position:
               31-384
               

               Cow position:
               chr1:81228104-81228457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               254
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               177, 22
               

               Conread position:
               32-216
               

               Cow position:
               chr1:59551671-59551487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               121, 20
               

               Conread position:
               32-273
               

               Cow position:
               chr1:60045221-60044981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               30, 139
               

               Conread position:
               32-309
               

               Cow position:
               chr1:102529620-102529899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               208
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               112, 164
               

               Conread position:
               32-345
               

               Cow position:
               chr1:74751395-74751713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               28, 17
               

               Conread position:
               32-346
               

               Cow position:
               chr1:60962223-60961905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               207
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               51, 21
               

               Conread position:
               32-378
               

               Cow position:
               chr1:73545676-73546013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               246
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               117, 21
               

               Conread position:
               32-378
               

               Cow position:
               chr1:101866267-101866607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               44, 32
               

               Conread position:
               32-384
               

               Cow position:
               chr1:4691821-4691477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               132, 119
               

               Conread position:
               32-384
               

               Cow position:
               chr1:44075493-44075828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               238
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               48, 24
               

               Conread position:
               32-384
               

               Cow position:
               chr1:101860251-101860606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 100
               

               Conread position:
               32-463
               

               Cow position:
               chr1:71119753-71119330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               293
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               130, 25
               

               Conread position:
               33-173
               

               Cow position:
               chr1:34952469-34952335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               108
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               33-238
               

               Cow position:
               chr1:99637019-99637226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               111, 154
               

               Conread position:
               33-249
               

               Cow position:
               chr1:46939643-46939868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               33-255
               

               Cow position:
               chr1:24656487-24656256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               109, 24
               

               Conread position:
               33-260
               

               Cow position:
               chr1:71945854-71946078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               179
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               105, 20
               

               Conread position:
               33-273
               

               Cow position:
               chr1:36080056-36079816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               119, 20
               

               Conread position:
               33-366
               

               Cow position:
               chr1:63139075-63138742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               219
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               55, 31
               

               Conread position:
               33-378
               

               Cow position:
               chr1:54156504-54156843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 30
               

               Conread position:
               33-378
               

               Cow position:
               chr1:84905830-84906176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               121, 20
               

               Conread position:
               33-378
               

               Cow position:
               chr1:95296361-95296721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               18, 167
               

               Conread position:
               33-384
               

               Cow position:
               chr1:13810883-13810535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               243
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               15, 32
               

               Conread position:
               33-384
               

               Cow position:
               chr1:51446113-51445762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               251
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               231, 31
               

               Conread position:
               33-384
               

               Cow position:
               chr1:87198054-87197710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 19
               

               Conread position:
               33-384
               

               Cow position:
               chr1:99642140-99642483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               234
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               16, 37
               

               Conread position:
               34-266
               

               Cow position:
               chr1:81364493-81364260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               152
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               112, 30
               

               Conread position:
               34-328
               

               Cow position:
               chr1:48618016-48618301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               34-384
               

               Cow position:
               chr1:19144710-19145040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               19, 31
               

               Conread position:
               34-411
               

               Cow position:
               chr1:14308800-14309183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               260
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               120, 19
               

               Conread position:
               35-205
               

               Cow position:
               chr1:70476522-70476690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               31, 111
               

               Conread position:
               35-225
               

               Cow position:
               chr1:75227095-75227279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               35-247
               

               Cow position:
               chr1:102523410-102523622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               120, 72
               

               Conread position:
               35-252
               

               Cow position:
               chr1:98380064-98380283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               18, 135
               

               Conread position:
               35-283
               

               Cow position:
               chr1:101439259-101439503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               173, 59
               

               Conread position:
               35-328
               

               Cow position:
               chr1:6287376-6287086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               198
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               127, 14
               

               Conread position:
               35-349
               

               Cow position:
               chr1:92580988-92580669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               54, 29
               

               Conread position:
               35-352
               

               Cow position:
               chr1:49077094-49077419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               218
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               102, 29
               

               Conread position:
               35-382
               

               Cow position:
               chr1:101835045-101834709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               245
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               69, 38
               

               Conread position:
               35-384
               

               Cow position:
               chr1:6228353-6228702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               237
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               69, 39
               

               Conread position:
               35-384
               

               Cow position:
               chr1:72105628-72105295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               233
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               229, 18
               

               Conread position:
               35-384
               

               Cow position:
               chr1:84103830-84104171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               238
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               92, 18
               

               Conread position:
               36-378
               

               Cow position:
               chr1:95638065-95637721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               224
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               37, 268
               

               Conread position:
               36-384
               

               Cow position:
               chr1:36880517-36880161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               40, 20
               

               Conread position:
               36-394
               

               Cow position:
               chr1:86113170-86113530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               246
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               111, 29
               

               Conread position:
               36-411
               

               Cow position:
               chr1:46693423-46693797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               101, 17
               

               Conread position:
               37-214
               

               Cow position:
               chr1:99031750-99031927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               98, 28
               

               Conread position:
               37-247
               

               Cow position:
               chr1:1380227-1380016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               64, 16
               

               Conread position:
               37-265
               

               Cow position:
               chr1:32014414-32014199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               37-282
               

               Cow position:
               chr1:75411610-75411856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               117, 16
               

               Conread position:
               37-327
               

               Cow position:
               chr1:50432253-50432548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               197
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               112, 141
               

               Conread position:
               37-327
               

               Cow position:
               chr1:79004204-79003913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               214
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               117, 154
               

               Conread position:
               37-328
               

               Cow position:
               chr1:83659049-83659342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               145, 16
               

               Conread position:
               37-368
               

               Cow position:
               chr1:22824135-22823804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               231
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               101, 16
               

               Conread position:
               37-378
               

               Cow position:
               chr1:7748443-7748109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               237
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               107, 20
               

               Conread position:
               37-379
               

               Cow position:
               chr1:78794007-78794337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 104
               

               Conread position:
               37-383
               

               Cow position:
               chr1:22526106-22525760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               248
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               11, 112
               

               Conread position:
               37-384
               

               Cow position:
               chr1:28563335-28563686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               90, 15
               

               Conread position:
               37-384
               

               Cow position:
               chr1:53374654-53374313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               117, 27
               

               Conread position:
               37-384
               

               Cow position:
               chr1:87094983-87095348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               243
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               37-385
               

               Cow position:
               chr1:18936611-18936948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               145, 16
               

               Conread position:
               38-244
               

               Cow position:
               chr1:20537427-20537227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               148, 15
               

               Conread position:
               38-249
               

               Cow position:
               chr1:47242233-47242446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               137, 119
               

               Conread position:
               38-283
               

               Cow position:
               chr1:150699-150943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               116, 15
               

               Conread position:
               38-378
               

               Cow position:
               chr1:484231-484577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               242
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               20, 116
               

               Conread position:
               38-378
               

               Cow position:
               chr1:7752608-7752275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               28, 57
               

               Conread position:
               38-382
               

               Cow position:
               chr1:11172595-11172259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               103, 108
               

               Conread position:
               38-382
               

               Cow position:
               chr1:33330876-33331200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               242
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               39-285
               

               Cow position:
               chr1:85818473-85818231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               27, 41
               

               Conread position:
               39-321
               

               Cow position:
               chr1:52661950-52662229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               81, 56
               

               Conread position:
               39-347
               

               Cow position:
               chr1:68217141-68217444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               149, 14
               

               Conread position:
               39-384
               

               Cow position:
               chr1:20002011-20002358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               237
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               110, 14
               

               Conread position:
               39-384
               

               Cow position:
               chr1:55428726-55429073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               240
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               25, 296
               

               Conread position:
               39-386
               

               Cow position:
               chr1:71228319-71227967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               107, 13
               

               Conread position:
               40-244
               

               Cow position:
               chr1:22828348-22828548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               125, 106
               

               Conread position:
               40-343
               

               Cow position:
               chr1:10941874-10942174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               214
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               219, 24
               

               Conread position:
               40-343
               

               Cow position:
               chr1:10964512-10964212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               215
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               219, 24
               

               Conread position:
               40-368
               

               Cow position:
               chr1:874886-874549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               229
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               72, 13
               

               Conread position:
               40-383
               

               Cow position:
               chr1:4701447-4701789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               109, 24
               

               Conread position:
               40-383
               

               Cow position:
               chr1:61391570-61391905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               26, 35
               

               Conread position:
               40-384
               

               Cow position:
               chr1:42397972-42398314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               246
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               146, 24
               

               Conread position:
               40-384
               

               Cow position:
               chr1:50930756-50931093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 24
               

               Conread position:
               40-384
               

               Cow position:
               chr1:51394643-51394304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               231
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               224, 119
               

               Conread position:
               41-238
               

               Cow position:
               chr1:31846217-31846028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               116, 13
               

               Conread position:
               41-240
               

               Cow position:
               chr1:5479433-5479634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               9, 146
               

               Conread position:
               41-254
               

               Cow position:
               chr1:12848295-12848079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               21, 136
               

               Conread position:
               41-289
               

               Cow position:
               chr1:72092399-72092647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               123, 103
               

               Conread position:
               41-374
               

               Cow position:
               chr1:3605669-3605985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               108, 10
               

               Conread position:
               41-384
               

               Cow position:
               chr1:54199173-54199501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               233
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               106, 36
               

               Conread position:
               42-384
               

               Cow position:
               chr1:68863243-68862916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               234
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               18, 87
               

               Conread position:
               43-241
               

               Cow position:
               chr1:77098903-77099095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               15, 101
               

               Conread position:
               43-251
               

               Cow position:
               chr1:89835935-89835732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               17, 103
               

               Conread position:
               43-351
               

               Cow position:
               chr1:3815461-3815775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               81, 22
               

               Conread position:
               43-355
               

               Cow position:
               chr1:29626690-29627000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               103, 14
               

               Conread position:
               43-366
               

               Cow position:
               chr1:39426796-39427101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               221
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               221, 10
               

               Conread position:
               43-384
               

               Cow position:
               chr1:25383890-25383545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               239, 21
               

               Conread position:
               44-255
               

               Cow position:
               chr1:61146338-61146131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               44-383
               

               Cow position:
               chr1:87072913-87072581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               181, 9
               

               Conread position:
               44-384
               

               Cow position:
               chr1:70422525-70422187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               17, 48
               

               Conread position:
               44-386
               

               Cow position:
               chr1:42541814-42541476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 44
               

               Conread position:
               45-249
               

               Cow position:
               chr1:54569920-54569715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               99, 19
               

               Conread position:
               45-366
               

               Cow position:
               chr1:60856540-60856217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               101, 19
               

               Conread position:
               45-379
               

               Cow position:
               chr1:69551255-69551596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               26, 92
               

               Conread position:
               45-384
               

               Cow position:
               chr1:89509708-89510039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 83
               

               Conread position:
               46-265
               

               Cow position:
               chr1:100573409-100573626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               46-272
               

               Cow position:
               chr1:66752414-66752636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               218, 11
               

               Conread position:
               46-348
               

               Cow position:
               chr1:6166451-6166161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               146, 75
               

               Conread position:
               46-368
               

               Cow position:
               chr1:4391049-4391384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               225
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               90, 131
               

               Conread position:
               46-384
               

               Cow position:
               chr1:7443201-7442865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               235
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               88, 144
               

               Conread position:
               46-384
               

               Cow position:
               chr1:24132846-24133175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 17
               

               Conread position:
               46-384
               

               Cow position:
               chr1:41697273-41696941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 83
               

               Conread position:
               47-249
               

               Cow position:
               chr1:65030287-65030084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               100, 10
               

               Conread position:
               47-249
               

               Cow position:
               chr1:84595108-84594905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               100, 10
               

               Conread position:
               47-274
               

               Cow position:
               chr1:13157411-13157176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               109, 10
               

               Conread position:
               47-289
               

               Cow position:
               chr1:15103104-15102865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               5, 163
               

               Conread position:
               47-332
               

               Cow position:
               chr1:82870298-82870591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               100, 17
               

               Conread position:
               47-334
               

               Cow position:
               chr1:51609595-51609306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               199
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               130, 17
               

               Conread position:
               47-368
               

               Cow position:
               chr1:88397625-88397941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               105, 26
               

               Conread position:
               47-384
               

               Cow position:
               chr1:101280520-101280833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               223
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               48-245
               

               Cow position:
               chr1:11708808-11708997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               48-256
               

               Cow position:
               chr1:50585659-50585868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               170, 104
               

               Conread position:
               48-297
               

               Cow position:
               chr1:17056208-17055960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               16, 104
               

               Conread position:
               48-342
               

               Cow position:
               chr1:35671754-35671466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               215
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               18, 92
               

               Conread position:
               48-346
               

               Cow position:
               chr1:53403001-53402702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               96, 129
               

               Conread position:
               48-366
               

               Cow position:
               chr1:91755499-91755192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               215
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               105, 17
               

               Conread position:
               48-367
               

               Cow position:
               chr1:85688400-85688089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               217
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               96, 5
               

               Conread position:
               48-373
               

               Cow position:
               chr1:10617107-10616774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               129, 16
               

               Conread position:
               48-378
               

               Cow position:
               chr1:31765154-31765498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               228
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               140, 16
               

               Conread position:
               48-384
               

               Cow position:
               chr1:196789-197121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               213, 92
               

               Conread position:
               48-384
               

               Cow position:
               chr1:92369967-92369615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               246
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               110, 25
               

               Conread position:
               49-250
               

               Cow position:
               chr1:5872557-5872763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               49-259
               

               Cow position:
               chr1:95704021-95703813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               15, 92
               

               Conread position:
               49-274
               

               Cow position:
               chr1:8788506-8788282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               123, 42
               

               Conread position:
               49-343
               

               Cow position:
               chr1:22836616-22836316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               95, 45
               

               Conread position:
               49-343
               

               Cow position:
               chr1:77232352-77232650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               230
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               13, 47
               

               Conread position:
               49-365
               

               Cow position:
               chr1:102305931-102306243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               215, 78
               

               Conread position:
               49-377
               

               Cow position:
               chr1:24908826-24909164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               5, 32
               

               Conread position:
               49-378
               

               Cow position:
               chr1:34160045-34159726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               10, 79
               

               Conread position:
               49-379
               

               Cow position:
               chr1:53651197-53650902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               17, 106
               

               Conread position:
               49-383
               

               Cow position:
               chr1:86110528-86110847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 38
               

               Conread position:
               49-383
               

               Cow position:
               chr1:94226327-94226667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               231
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               12, 207
               

               Conread position:
               49-384
               

               Cow position:
               chr1:15547681-15547351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               255, 78
               

               Conread position:
               49-384
               

               Cow position:
               chr1:43311553-43311893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               227
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               88, 31
               

               Conread position:
               49-384
               

               Cow position:
               chr1:68817585-68817916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 37
               

               Conread position:
               49-384
               

               Cow position:
               chr1:69678107-69678439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               232
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               45, 182
               

               Conread position:
               49-384
               

               Cow position:
               chr1:92996671-92997015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               241
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               72, 15
               

               Conread position:
               49-389
               

               Cow position:
               chr1:77986200-77986545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               232
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               82, 129
               

               Conread position:
               50-209
               

               Cow position:
               chr1:39095699-39095545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               50-213
               

               Cow position:
               chr1:95976548-95976386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               125
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               126, 93
               

               Conread position:
               50-216
               

               Cow position:
               chr1:73644293-73644457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               50-224
               

               Cow position:
               chr1:6874030-6873853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               128
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               99, 134
               

               Conread position:
               50-224
               

               Cow position:
               chr1:47969456-47969289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               13, 99
               

               Conread position:
               50-228
               

               Cow position:
               chr1:79169937-79170115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               13, 42
               

               Conread position:
               50-230
               

               Cow position:
               chr1:89146657-89146838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               126
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               104, 168
               

               Conread position:
               50-238
               

               Cow position:
               chr1:30469998-30469809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               97, 14
               

               Conread position:
               50-241
               

               Cow position:
               chr1:79631319-79631510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               94, 136
               

               Conread position:
               50-244
               

               Cow position:
               chr1:97321829-97322029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               11, 172
               

               Conread position:
               50-247
               

               Cow position:
               chr1:4329694-4329881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               50-247
               

               Cow position:
               chr1:91937928-91937735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               96, 108
               

               Conread position:
               50-247
               

               Cow position:
               chr1:98415808-98415606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               94, 140
               

               Conread position:
               50-249
               

               Cow position:
               chr1:39683926-39684127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               19, 134
               

               Conread position:
               50-249
               

               Cow position:
               chr1:89297891-89298093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               16, 144
               

               Conread position:
               50-249
               

               Cow position:
               chr1:89301500-89301702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               16, 144
               

               Conread position:
               50-252
               

               Cow position:
               chr1:15875874-15875674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               114, 94
               

               Conread position:
               50-252
               

               Cow position:
               chr1:70416546-70416746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               50-254
               

               Cow position:
               chr1:82538142-82537942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               143, 77
               

               Conread position:
               50-255
               

               Cow position:
               chr1:63461092-63460889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               50-257
               

               Cow position:
               chr1:525021-524817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               50-257
               

               Cow position:
               chr1:47467863-47468072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               69, 80
               

               Conread position:
               50-260
               

               Cow position:
               chr1:70483121-70483328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               164
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               50-271
               

               Cow position:
               chr1:95156749-95156969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               17, 89
               

               Conread position:
               50-272
               

               Cow position:
               chr1:1496313-1496539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               70, 14
               

               Conread position:
               50-272
               

               Cow position:
               chr1:6731394-6731174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               159
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               115, 95
               

               Conread position:
               50-274
               

               Cow position:
               chr1:4444623-4444851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               7, 138
               

               Conread position:
               50-282
               

               Cow position:
               chr1:5751530-5751296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               94, 77
               

               Conread position:
               50-282
               

               Cow position:
               chr1:98912224-98911991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               11, 174
               

               Conread position:
               50-287
               

               Cow position:
               chr1:20871342-20871581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               77, 14
               

               Conread position:
               50-287
               

               Cow position:
               chr1:73719685-73719439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               83, 7
               

               Conread position:
               50-302
               

               Cow position:
               chr1:79630702-79630936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               8, 58
               

               Conread position:
               50-307
               

               Cow position:
               chr1:85772220-85771968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               5, 23
               

               Conread position:
               50-309
               

               Cow position:
               chr1:71789934-71790192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               142, 14
               

               Conread position:
               50-321
               

               Cow position:
               chr1:81481170-81481439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               213, 89
               

               Conread position:
               50-327
               

               Cow position:
               chr1:62235243-62235508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               58, 13
               

               Conread position:
               50-328
               

               Cow position:
               chr1:101507565-101507296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               195
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               214, 65
               

               Conread position:
               50-330
               

               Cow position:
               chr1:46143252-46143526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 79
               

               Conread position:
               50-342
               

               Cow position:
               chr1:62998016-62997725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               85, 175
               

               Conread position:
               50-344
               

               Cow position:
               chr1:78097138-78096847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 15
               

               Conread position:
               50-345
               

               Cow position:
               chr1:101159144-101158838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               211
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               11, 136
               

               Conread position:
               50-348
               

               Cow position:
               chr1:48606248-48605949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               138, 14
               

               Conread position:
               50-348
               

               Cow position:
               chr1:73457878-73458175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               11, 190
               

               Conread position:
               50-352
               

               Cow position:
               chr1:21954013-21954317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               201, 26
               

               Conread position:
               50-360
               

               Cow position:
               chr1:90904540-90904847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 98
               

               Conread position:
               50-365
               

               Cow position:
               chr1:37726200-37726513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               56, 14
               

               Conread position:
               50-366
               

               Cow position:
               chr1:724954-724638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               221
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               89, 50
               

               Conread position:
               50-377
               

               Cow position:
               chr1:43855504-43855191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               229
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               191, 77
               

               Conread position:
               50-377
               

               Cow position:
               chr1:97232186-97231850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               77, 44
               

               Conread position:
               50-378
               

               Cow position:
               chr1:5010619-5010948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               81, 14
               

               Conread position:
               50-378
               

               Cow position:
               chr1:22943812-22944137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               14, 85
               

               Conread position:
               50-378
               

               Cow position:
               chr1:25735083-25734757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               99, 51
               

               Conread position:
               50-378
               

               Cow position:
               chr1:63390549-63390882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               104, 126
               

               Conread position:
               50-378
               

               Cow position:
               chr1:76740457-76740790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               221
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               93, 120
               

               Conread position:
               50-379
               

               Cow position:
               chr1:10716719-10716390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               77, 20
               

               Conread position:
               50-379
               

               Cow position:
               chr1:23998708-23999033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               249
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               16, 35
               

               Conread position:
               50-379
               

               Cow position:
               chr1:56225996-56225681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               214, 7
               

               Conread position:
               50-379
               

               Cow position:
               chr1:56618441-56618763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 96
               

               Conread position:
               50-381
               

               Cow position:
               chr1:91651130-91651474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               229
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               12, 140
               

               Conread position:
               50-382
               

               Cow position:
               chr1:42482414-42482087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               233
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               40, 14
               

               Conread position:
               50-382
               

               Cow position:
               chr1:82936389-82936701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 37
               

               Conread position:
               50-383
               

               Cow position:
               chr1:21787539-21787214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               214, 55
               

               Conread position:
               50-383
               

               Cow position:
               chr1:31934719-31934395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               229
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               210, 77
               

               Conread position:
               50-384
               

               Cow position:
               chr1:261249-261596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               259
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               86, 60
               

               Conread position:
               50-384
               

               Cow position:
               chr1:1878237-1877911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               96, 14
               

               Conread position:
               50-384
               

               Cow position:
               chr1:4243115-4243460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               95, 137
               

               Conread position:
               50-384
               

               Cow position:
               chr1:12222388-12222722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               10, 129
               

               Conread position:
               50-384
               

               Cow position:
               chr1:19481884-19482192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               6, 46
               

               Conread position:
               50-384
               

               Cow position:
               chr1:19970379-19970718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               81, 44
               

               Conread position:
               50-384
               

               Cow position:
               chr1:20667535-20667859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               237
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               214, 44
               

               Conread position:
               50-384
               

               Cow position:
               chr1:21955157-21955490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               219
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               114, 135
               

               Conread position:
               50-384
               

               Cow position:
               chr1:22729269-22728934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 33
               

               Conread position:
               50-384
               

               Cow position:
               chr1:29935176-29935495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               234
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               254, 54
               

               Conread position:
               50-384
               

               Cow position:
               chr1:33720319-33720000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               236
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               96, 137
               

               Conread position:
               50-384
               

               Cow position:
               chr1:35600075-35600415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               94, 140
               

               Conread position:
               50-384
               

               Cow position:
               chr1:40600240-40599926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               243
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               216, 45
               

               Conread position:
               50-384
               

               Cow position:
               chr1:42887065-42887382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 91
               

               Conread position:
               50-384
               

               Cow position:
               chr1:45555580-45555247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 45
               

               Conread position:
               50-384
               

               Cow position:
               chr1:51417979-51417655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               220
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               27, 14
               

               Conread position:
               50-384
               

               Cow position:
               chr1:53623172-53622842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 82
               

               Conread position:
               50-384
               

               Cow position:
               chr1:61741749-61742085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 39
               

               Conread position:
               50-384
               

               Cow position:
               chr1:64572729-64572396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 99
               

               Conread position:
               50-384
               

               Cow position:
               chr1:66138537-66138202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               227
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               70, 138
               

               Conread position:
               50-384
               

               Cow position:
               chr1:70538821-70538490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 92
               

               Conread position:
               50-384
               

               Cow position:
               chr1:72068617-72068956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 26
               

               Conread position:
               50-384
               

               Cow position:
               chr1:78857110-78857438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 230
               

               Conread position:
               50-384
               

               Cow position:
               chr1:79844693-79844349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 14
               

               Conread position:
               50-384
               

               Cow position:
               chr1:97755716-97755399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               234
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               215, 95
               

               Conread position:
               50-384
               

               Cow position:
               chr1:97820899-97820572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               40, 138
               

               Conread position:
               50-385
               

               Cow position:
               chr1:63434582-63434925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               235
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               10, 247
               

               Conread position:
               50-385
               

               Cow position:
               chr1:69539900-69539578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               234
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               215, 85
               

               Conread position:
               50-397
               

               Cow position:
               chr1:22730950-22730617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               232
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               5, 96
               

               Conread position:
               51-220
               

               Cow position:
               chr1:53474362-53474202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               51-225
               

               Cow position:
               chr1:19384243-19384415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               51-237
               

               Cow position:
               chr1:30028018-30028200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               51-241
               

               Cow position:
               chr1:3679312-3679493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               9, 113
               

               Conread position:
               51-251
               

               Cow position:
               chr1:47966805-47967008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               51-272
               

               Cow position:
               chr1:100823253-100823031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               95, 6
               

               Conread position:
               51-378
               

               Cow position:
               chr1:69694793-69695103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               204, 41
               

               Conread position:
               51-383
               

               Cow position:
               chr1:59519125-59518804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               235
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               213, 91
               

               Conread position:
               51-383
               

               Cow position:
               chr1:86682353-86682679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               213, 96
               

               Conread position:
               51-384
               

               Cow position:
               chr1:57575549-57575876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 91
               

               Conread position:
               52-237
               

               Cow position:
               chr1:56749028-56748841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               52-238
               

               Cow position:
               chr1:100800556-100800741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               164, 84
               

               Conread position:
               52-255
               

               Cow position:
               chr1:4294558-4294355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               97, 49
               

               Conread position:
               52-308
               

               Cow position:
               chr1:89158495-89158742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               212, 39
               

               Conread position:
               52-317
               

               Cow position:
               chr1:100753745-100753478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               36, 138
               

               Conread position:
               52-347
               

               Cow position:
               chr1:61012518-61012229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               210, 12
               

               Conread position:
               52-352
               

               Cow position:
               chr1:78079935-78079635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               203
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               109, 12
               

               Conread position:
               52-368
               

               Cow position:
               chr1:21508609-21508292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               205
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               70, 111
               

               Conread position:
               52-378
               

               Cow position:
               chr1:36998395-36998084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               52-383
               

               Cow position:
               chr1:73960899-73960589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 39
               

               Conread position:
               52-384
               

               Cow position:
               chr1:99609582-99609250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               232
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               14, 102
               

               Conread position:
               52-388
               

               Cow position:
               chr1:66898281-66898619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               230
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               75, 212
               

               Conread position:
               53-196
               

               Cow position:
               chr1:61560285-61560431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               68, 12
               

               Conread position:
               53-235
               

               Cow position:
               chr1:72069892-72070083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               67, 12
               

               Conread position:
               53-241
               

               Cow position:
               chr1:84782536-84782726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               93, 133
               

               Conread position:
               53-249
               

               Cow position:
               chr1:82336882-82336695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-21
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               53-251
               

               Cow position:
               chr1:64811449-64811251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               93, 169
               

               Conread position:
               53-252
               

               Cow position:
               chr1:94823177-94823378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               94, 124
               

               Conread position:
               53-255
               

               Cow position:
               chr1:25021866-25022064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               112, 88
               

               Conread position:
               53-255
               

               Cow position:
               chr1:85622744-85622540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               96, 134
               

               Conread position:
               53-282
               

               Cow position:
               chr1:79846035-79846268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               91, 124
               

               Conread position:
               53-285
               

               Cow position:
               chr1:73020450-73020682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               91, 38
               

               Conread position:
               53-290
               

               Cow position:
               chr1:83024955-83025190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 19
               

               Conread position:
               53-298
               

               Cow position:
               chr1:76037300-76037549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               75, 135
               

               Conread position:
               53-309
               

               Cow position:
               chr1:43286541-43286301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               214, 39
               

               Conread position:
               53-321
               

               Cow position:
               chr1:92197666-92197398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               83, 38
               

               Conread position:
               53-328
               

               Cow position:
               chr1:80584642-80584369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               200
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               9, 95
               

               Conread position:
               53-334
               

               Cow position:
               chr1:3942004-3942276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               31, 93
               

               Conread position:
               53-339
               

               Cow position:
               chr1:6394771-6394486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               14, 89
               

               Conread position:
               53-348
               

               Cow position:
               chr1:47790456-47790747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               211, 74
               

               Conread position:
               53-352
               

               Cow position:
               chr1:65103841-65103534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               90, 182
               

               Conread position:
               53-355
               

               Cow position:
               chr1:26895600-26895915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               212
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               206, 90
               

               Conread position:
               53-361
               

               Cow position:
               chr1:628180-627867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               96, 133
               

               Conread position:
               53-365
               

               Cow position:
               chr1:3588597-3588900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               84, 11
               

               Conread position:
               53-368
               

               Cow position:
               chr1:46031173-46030858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               219
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               103, 41
               

               Conread position:
               53-371
               

               Cow position:
               chr1:13547772-13548087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               110, 26
               

               Conread position:
               53-376
               

               Cow position:
               chr1:8374241-8374561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               101, 131
               

               Conread position:
               53-378
               

               Cow position:
               chr1:52435487-52435163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               218
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               86, 133
               

               Conread position:
               53-384
               

               Cow position:
               chr1:8832-8504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               236
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               13, 233
               

               Conread position:
               53-384
               

               Cow position:
               chr1:12464453-12464783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 89
               

               Conread position:
               53-384
               

               Cow position:
               chr1:29481416-29481744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               226
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               99, 11
               

               Conread position:
               53-384
               

               Cow position:
               chr1:34686378-34686077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               13, 35
               

               Conread position:
               53-384
               

               Cow position:
               chr1:43505736-43505407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 87
               

               Conread position:
               53-384
               

               Cow position:
               chr1:48443979-48444311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               231
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               80, 110
               

               Conread position:
               53-384
               

               Cow position:
               chr1:70435198-70434886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               211, 92
               

               Conread position:
               53-384
               

               Cow position:
               chr1:72304190-72304488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               227
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               53-384
               

               Cow position:
               chr1:91065945-91066270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               224
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               211, 74
               

               Conread position:
               53-384
               

               Cow position:
               chr1:100552178-100551851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               229
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               173, 74
               

               Conread position:
               53-385
               

               Cow position:
               chr1:24777771-24778104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 152
               

               Conread position:
               53-397
               

               Cow position:
               chr1:101714328-101713983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               243, 92
               

               Conread position:
               54-204
               

               Cow position:
               chr1:44814453-44814608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               92, 20
               

               Conread position:
               54-218
               

               Cow position:
               chr1:2523175-2523011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               100, 155
               

               Conread position:
               54-228
               

               Cow position:
               chr1:53457023-53456849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               43, 153
               

               Conread position:
               54-254
               

               Cow position:
               chr1:19599149-19599349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               78, 131
               

               Conread position:
               54-274
               

               Cow position:
               chr1:22461028-22461247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               205, 107
               

               Conread position:
               54-318
               

               Cow position:
               chr1:500387-500121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               209, 0
               

               Conread position:
               54-378
               

               Cow position:
               chr1:15334100-15333773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               15, 93
               

               Conread position:
               54-378
               

               Cow position:
               chr1:90975865-90976196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               233
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               73, 138
               

               Conread position:
               54-384
               

               Cow position:
               chr1:3923593-3923912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               209, 76
               

               Conread position:
               54-384
               

               Cow position:
               chr1:48105214-48105551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 163
               

               Conread position:
               54-384
               

               Cow position:
               chr1:57880570-57880906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               54-384
               

               Cow position:
               chr1:63530771-63530456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               221
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               15, 211
               

               Conread position:
               54-384
               

               Cow position:
               chr1:64302039-64302365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               228
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               159, 41
               

               Conread position:
               54-384
               

               Cow position:
               chr1:75745071-75744743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               209, 32
               

               Conread position:
               54-384
               

               Cow position:
               chr1:79164871-79165203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 100
               

               Conread position:
               54-384
               

               Cow position:
               chr1:96964530-96964202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               235
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               98, 137
               

               Conread position:
               55-212
               

               Cow position:
               chr1:92578622-92578779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               11, 79
               

               Conread position:
               55-230
               

               Cow position:
               chr1:101788887-101789057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               127
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               55-331
               

               Cow position:
               chr1:3966039-3965775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               84, 37
               

               Conread position:
               55-378
               

               Cow position:
               chr1:101822293-101822612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               11, 108
               

               Conread position:
               56-213
               

               Cow position:
               chr1:80423523-80423679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               120, 96
               

               Conread position:
               56-247
               

               Cow position:
               chr1:62469267-62469080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               56-252
               

               Cow position:
               chr1:76518634-76518436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               81, 101
               

               Conread position:
               56-270
               

               Cow position:
               chr1:73551293-73551515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               56-281
               

               Cow position:
               chr1:45315422-45315652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               56-289
               

               Cow position:
               chr1:55753010-55753239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               179
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               208, 85
               

               Conread position:
               56-332
               

               Cow position:
               chr1:19515408-19515680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               73, 56
               

               Conread position:
               56-344
               

               Cow position:
               chr1:68855376-68855085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               204
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               56-364
               

               Cow position:
               chr1:30189366-30189049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               213
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               65, 180
               

               Conread position:
               56-383
               

               Cow position:
               chr1:68763475-68763798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               63, 103
               

               Conread position:
               56-384
               

               Cow position:
               chr1:71295095-71295426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 36
               

               Conread position:
               56-384
               

               Cow position:
               chr1:74955823-74956139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               235
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               209, 81
               

               Conread position:
               56-386
               

               Cow position:
               chr1:100449983-100450303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               208, 38
               

               Conread position:
               57-238
               

               Cow position:
               chr1:98742224-98742050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               57-248
               

               Cow position:
               chr1:32035506-32035692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               57-257
               

               Cow position:
               chr1:55685770-55685969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               160
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               57-271
               

               Cow position:
               chr1:102648488-102648272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               75, 109
               

               Conread position:
               57-274
               

               Cow position:
               chr1:68688787-68688574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               172
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               207, 72
               

               Conread position:
               57-282
               

               Cow position:
               chr1:53452729-53452520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               206, 38
               

               Conread position:
               57-295
               

               Cow position:
               chr1:49980916-49980680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               207, 83
               

               Conread position:
               57-302
               

               Cow position:
               chr1:67654117-67654356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               207, 34
               

               Conread position:
               57-321
               

               Cow position:
               chr1:70175333-70175596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               152, 78
               

               Conread position:
               57-328
               

               Cow position:
               chr1:5597004-5597271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               203
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               151, 88
               

               Conread position:
               57-330
               

               Cow position:
               chr1:33998957-33998693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               207, 86
               

               Conread position:
               57-330
               

               Cow position:
               chr1:78066335-78066602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               202
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               207, 70
               

               Conread position:
               57-343
               

               Cow position:
               chr1:26178600-26178889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               97, 129
               

               Conread position:
               57-343
               

               Cow position:
               chr1:102754058-102753776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               189, 14
               

               Conread position:
               57-344
               

               Cow position:
               chr1:86056870-86057144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               107, 70
               

               Conread position:
               57-345
               

               Cow position:
               chr1:84811733-84812022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 90
               

               Conread position:
               57-348
               

               Cow position:
               chr1:49824857-49825151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               189, 83
               

               Conread position:
               57-369
               

               Cow position:
               chr1:7306176-7305874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               206
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               110, 16
               

               Conread position:
               57-378
               

               Cow position:
               chr1:3324082-3323760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               89, 121
               

               Conread position:
               57-382
               

               Cow position:
               chr1:78811246-78810924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               247, 90
               

               Conread position:
               57-383
               

               Cow position:
               chr1:6826084-6826405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               227
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               70, 48
               

               Conread position:
               57-384
               

               Cow position:
               chr1:14379342-14379652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               223
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               240, 89
               

               Conread position:
               57-384
               

               Cow position:
               chr1:16855493-16855808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               114, 75
               

               Conread position:
               57-384
               

               Cow position:
               chr1:20950925-20950604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               222
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               90, 206
               

               Conread position:
               57-384
               

               Cow position:
               chr1:34771291-34771621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               85, 34
               

               Conread position:
               57-384
               

               Cow position:
               chr1:37321802-37322119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 66
               

               Conread position:
               57-384
               

               Cow position:
               chr1:54478524-54478207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               232
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               207, 70
               

               Conread position:
               57-384
               

               Cow position:
               chr1:61005349-61005679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 159
               

               Conread position:
               57-384
               

               Cow position:
               chr1:68618732-68619051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               234
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               129, 35
               

               Conread position:
               57-384
               

               Cow position:
               chr1:78838996-78838681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               234
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               12, 71
               

               Conread position:
               57-384
               

               Cow position:
               chr1:81568821-81569148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 95
               

               Conread position:
               57-384
               

               Cow position:
               chr1:88913528-88913201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 154
               

               Conread position:
               57-384
               

               Cow position:
               chr1:90621298-90621627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 57
               

               Conread position:
               57-384
               

               Cow position:
               chr1:91023260-91023585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 37
               

               Conread position:
               57-384
               

               Cow position:
               chr1:93499827-93499509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 88
               

               Conread position:
               57-384
               

               Cow position:
               chr1:95558247-95557919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               221
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               92, 23
               

               Conread position:
               58-224
               

               Cow position:
               chr1:43379154-43379320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               106, 118
               

               Conread position:
               58-230
               

               Cow position:
               chr1:41022623-41022455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               58-255
               

               Cow position:
               chr1:81473365-81473166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               86, 119
               

               Conread position:
               58-255
               

               Cow position:
               chr1:87149609-87149804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               58-262
               

               Cow position:
               chr1:42775113-42774915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               79, 42
               

               Conread position:
               58-269
               

               Cow position:
               chr1:100852909-100852705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               205, 34
               

               Conread position:
               58-269
               

               Cow position:
               chr1:102768382-102768177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               206, 33
               

               Conread position:
               58-272
               

               Cow position:
               chr1:242759-242550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               206, 84
               

               Conread position:
               58-289
               

               Cow position:
               chr1:8287423-8287654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               206, 125
               

               Conread position:
               58-315
               

               Cow position:
               chr1:53603966-53603705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               89, 118
               

               Conread position:
               58-318
               

               Cow position:
               chr1:57089472-57089735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               88, 16
               

               Conread position:
               58-332
               

               Cow position:
               chr1:54267731-54267999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 89
               

               Conread position:
               58-344
               

               Cow position:
               chr1:37706762-37707051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               205
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               78, 33
               

               Conread position:
               58-352
               

               Cow position:
               chr1:96558639-96558920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               77, 129
               

               Conread position:
               58-373
               

               Cow position:
               chr1:10655684-10655378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               92, 73
               

               Conread position:
               58-378
               

               Cow position:
               chr1:65318784-65318467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               221
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               86, 130
               

               Conread position:
               58-383
               

               Cow position:
               chr1:22192977-22192647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               229
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               96, 71
               

               Conread position:
               58-384
               

               Cow position:
               chr1:3429307-3429630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               201, 86
               

               Conread position:
               58-384
               

               Cow position:
               chr1:44507175-44506850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               227
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               206, 64
               

               Conread position:
               59-213
               

               Cow position:
               chr1:90192626-90192469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               62, 129
               

               Conread position:
               59-255
               

               Cow position:
               chr1:98556912-98557108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               59-269
               

               Cow position:
               chr1:93590384-93590589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               59-289
               

               Cow position:
               chr1:90267930-90267697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               87, 131
               

               Conread position:
               59-316
               

               Cow position:
               chr1:52912686-52912948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               59, 144
               

               Conread position:
               59-326
               

               Cow position:
               chr1:57053410-57053137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               88, 127
               

               Conread position:
               59-328
               

               Cow position:
               chr1:88360091-88359819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               85, 224
               

               Conread position:
               59-332
               

               Cow position:
               chr1:52139422-52139698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               195
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               105, 46
               

               Conread position:
               59-342
               

               Cow position:
               chr1:7229479-7229766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               90, 123
               

               Conread position:
               59-355
               

               Cow position:
               chr1:71665728-71666021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               95, 109
               

               Conread position:
               59-372
               

               Cow position:
               chr1:89076417-89076734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               78, 35
               

               Conread position:
               59-378
               

               Cow position:
               chr1:31794802-31795114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               87, 13
               

               Conread position:
               59-382
               

               Cow position:
               chr1:8128773-8129082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 36
               

               Conread position:
               59-382
               

               Cow position:
               chr1:20000550-20000866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               203, 63
               

               Conread position:
               59-382
               

               Cow position:
               chr1:21578016-21577693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               220
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               40, 98
               

               Conread position:
               59-383
               

               Cow position:
               chr1:49317295-49317613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               205, 67
               

               Conread position:
               59-383
               

               Cow position:
               chr1:72011616-72011926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               205, 82
               

               Conread position:
               59-383
               

               Cow position:
               chr1:102266064-102266384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               211
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               202, 86
               

               Conread position:
               59-384
               

               Cow position:
               chr1:5423527-5423854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               112, 85
               

               Conread position:
               59-384
               

               Cow position:
               chr1:7971610-7971304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               191, 53
               

               Conread position:
               59-384
               

               Cow position:
               chr1:41056886-41056566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               59-384
               

               Cow position:
               chr1:47658554-47658231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               90, 130
               

               Conread position:
               59-384
               

               Cow position:
               chr1:95101157-95100845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               211
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               315, 108
               

               Conread position:
               59-384
               

               Cow position:
               chr1:102756230-102756547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               123, 14
               
59-385UCSC Genome Browser

               Conread position:
               
               

               Cow position:
               chr1:45019600-45019926 (view  custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               222
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               112, 62
               
59-394UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:chr1:81290710-81290379 (view  custom track)

               
               
               
Alignm length:340

               
               
               
Alignm identity:258

               
               
               
Alignm E-value:0

               
               
               
Alignm gaps (pig, cow):205, 86
60-209UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:chr1:50906476-50906623 (view  custom track)

               
               
               
Alignm length:150

               
               
               
Alignm identity:114

               
               
               
Alignm E-value:2e-25

               
               
               
Alignm gaps (pig, cow):85, 0

               
               
               Conread position:60-228
               
               
               Cow position:chr1:10470627-10470464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:60-233
               
               
               Cow position:chr1:46354234-46354406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):9, 86

               
               
               Conread position:60-235
               
               
               Cow position:chr1:49759749-49759572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):89, 129

               
               
               Conread position:60-238
               
               
               Cow position:chr1:14006330-14006150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:60-246
               
               
               Cow position:chr1:93235729-93235906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):184, 18

               
               
               Conread position:60-249
               
               
               Cow position:chr1:76474354-76474540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):55, 94

               
               
               Conread position:60-251
               
               
               Cow position:chr1:77810558-77810743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):167, 29

               
               
               Conread position:60-255
               
               
               Cow position:chr1:31340562-31340760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):29, 128

               
               
               Conread position:60-255
               
               
               Cow position:chr1:34001248-34001058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):103, 66

               
               
               Conread position:60-255
               
               
               Cow position:chr1:63994350-63994544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):111, 84

               
               
               Conread position:60-267
               
               
               Cow position:chr1:7966052-7965851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):205, 161

               
               
               Conread position:60-272
               
               
               Cow position:chr1:79719013-79718803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 116

               
               
               Conread position:60-274
               
               
               Cow position:chr1:36688175-36688387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):89, 35

               
               
               Conread position:60-296
               
               
               Cow position:chr1:81515444-81515202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):100, 114

               
               
               Conread position:60-343
               
               
               Cow position:chr1:41289573-41289854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 75

               
               
               Conread position:60-344
               
               
               Cow position:chr1:64678885-64678618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):204, 52

               
               
               Conread position:60-345
               
               
               Cow position:chr1:98583953-98583679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):175, 82

               
               
               Conread position:60-347
               
               
               Cow position:chr1:79135484-79135199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):202, 99

               
               
               Conread position:60-348
               
               
               Cow position:chr1:61846363-61846064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 141

               
               
               Conread position:60-349
               
               
               Cow position:chr1:22637220-22637507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 13

               
               
               Conread position:60-366
               
               
               Cow position:chr1:75250317-75250013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):87, 45

               
               
               Conread position:60-367
               
               
               Cow position:chr1:82513147-82513456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 49

               
               
               Conread position:60-368
               
               
               Cow position:chr1:71350519-71350824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):94, 134

               
               
               Conread position:60-378
               
               
               Cow position:chr1:29452128-29451810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):99, 116

               
               
               Conread position:60-383
               
               
               Cow position:chr1:16060803-16061133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):105, 77

               
               
               Conread position:60-383
               
               
               Cow position:chr1:41182041-41181729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):199, 67

               
               
               Conread position:60-384
               
               
               Cow position:chr1:11853481-11853803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:60-384
               
               
               Cow position:chr1:24542365-24542699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):238, 93

               
               
               Conread position:60-384
               
               
               Cow position:chr1:35162610-35162290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):206, 48

               
               
               Conread position:60-384
               
               
               Cow position:chr1:56225671-56225349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 26

               
               
               Conread position:60-384
               
               
               Cow position:chr1:61564986-61564679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):79, 120

               
               
               Conread position:60-384
               
               
               Cow position:chr1:85029141-85028841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):151, 59

               
               
               Conread position:60-384
               
               
               Cow position:chr1:89388548-89388226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 92

               
               
               Conread position:60-385
               
               
               Cow position:chr1:54258774-54258445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):86, 111

               
               
               Conread position:60-388
               
               
               Cow position:chr1:26934063-26934382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):68, 204

               
               
               Conread position:61-260
               
               
               Cow position:chr1:60603366-60603571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 132

               
               
               Conread position:61-261
               
               
               Cow position:chr1:46886433-46886233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):88, 36

               
               
               Conread position:61-261
               
               
               Cow position:chr1:71636124-71636320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):61, 82

               
               
               Conread position:61-272
               
               
               Cow position:chr1:51860360-51860568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):104, 77

               
               
               Conread position:61-272
               
               
               Cow position:chr1:77739929-77739715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):5, 116

               
               
               Conread position:61-289
               
               
               Cow position:chr1:81858697-81858927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):160, 73

               
               
               Conread position:61-329
               
               
               Cow position:chr1:48206336-48206598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):202, 30

               
               
               Conread position:61-378
               
               
               Cow position:chr1:38754121-38753809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):131, 66

               
               
               Conread position:61-384
               
               
               Cow position:chr1:62964472-62964161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 204

               
               
               Conread position:61-384
               
               
               Cow position:chr1:79640085-79640407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 86

               
               
               Conread position:62-247
               
               
               Cow position:chr1:83682969-83683152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:62-252
               
               
               Cow position:chr1:29671017-29671210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):77, 29

               
               
               Conread position:62-255
               
               
               Cow position:chr1:78029823-78030021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):87, 132

               
               
               Conread position:62-258
               
               
               Cow position:chr1:100538729-100538548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 52

               
               
               Conread position:62-357
               
               
               Cow position:chr1:100474442-100474141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:62-382
               
               
               Cow position:chr1:100422023-100421719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):82, 33

               
               
               Conread position:62-383
               
               
               Cow position:chr1:3607998-3607694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:62-384
               
               
               Cow position:chr1:23488300-23488626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):110, 96

               
               
               Conread position:63-272
               
               
               Cow position:chr1:97540841-97540628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):68, 113

               
               
               Conread position:63-377
               
               
               Cow position:chr1:27463330-27463021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):199, 41

               
               
               Conread position:63-382
               
               
               Cow position:chr1:16766884-16767196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):84, 180

               
               
               Conread position:63-384
               
               
               Cow position:chr1:70829098-70828785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 32

               
               
               Conread position:64-230
               
               
               Cow position:chr1:92363469-92363627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:64-255
               
               
               Cow position:chr1:95049664-95049855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):80, 30

               
               
               Conread position:64-270
               
               
               Cow position:chr1:6381977-6381767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 127

               
               
               Conread position:64-272
               
               
               Cow position:chr1:95618842-95618635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):200, 97

               
               
               Conread position:64-279
               
               
               Cow position:chr1:759211-759432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:64-283
               
               
               Cow position:chr1:73721565-73721342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):63, 99

               
               
               Conread position:64-289
               
               
               Cow position:chr1:41027273-41027051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):200, 75

               
               
               Conread position:64-332
               
               
               Cow position:chr1:30983291-30983556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):80, 62

               
               
               Conread position:64-348
               
               
               Cow position:chr1:82880832-82880563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):200, 64

               
               
               Conread position:64-379
               
               
               Cow position:chr1:68844955-68845269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):70, 22

               
               
               Conread position:64-383
               
               
               Cow position:chr1:58754597-58754911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 52

               
               
               Conread position:64-384
               
               
               Cow position:chr1:89449099-89448780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 77

               
               
               Conread position:65-302
               
               
               Cow position:chr1:79146614-79146852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):40, 146

               
               
               Conread position:65-378
               
               
               Cow position:chr1:100400004-100400307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 104

               
               
               Conread position:65-384
               
               
               Cow position:chr1:96081678-96081367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 30

               
               
               Conread position:65-385
               
               
               Cow position:chr1:55357089-55357405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):79, 172

               
               
               Conread position:68-332
               
               
               Cow position:chr1:95072540-95072264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:68-383
               
               
               Cow position:chr1:80311654-80311354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):70, 165

               
               
               Conread position:68-384
               
               
               Cow position:chr1:39224742-39225042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):196, 59

               
               
               Conread position:69-384
               
               
               Cow position:chr1:33409427-33409745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):83, 106

               
               
               Conread position:71-384
               
               
               Cow position:chr1:11729366-11729064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):7, 57

               
               
               Conread position:71-384
               
               
               Cow position:chr1:77720066-77720352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):193, 57

               
               
               Conread position:72-212
               
               
               Cow position:chr1:1799225-1799084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:72-244
               
               
               Cow position:chr1:91743270-91743437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:72-272
               
               
               Cow position:chr1:61011368-61011174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):192, 56

               
               
               Conread position:72-274
               
               
               Cow position:chr1:31855036-31855256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:72-296
               
               
               Cow position:chr1:62034642-62034860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):192, 38

               
               
               Conread position:72-326
               
               
               Cow position:chr1:64113607-64113854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):114, 55

               
               
               Conread position:72-332
               
               
               Cow position:chr1:45223769-45223514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):192, 70

               
               
               Conread position:72-343
               
               
               Cow position:chr1:39682191-39681919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):97, 29

               
               
               Conread position:72-366
               
               
               Cow position:chr1:6941659-6941364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):164, 66

               
               
               Conread position:72-366
               
               
               Cow position:chr1:6959072-6958777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):164, 66

               
               
               Conread position:72-366
               
               
               Cow position:chr1:49082939-49082641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:72-368
               
               
               Cow position:chr1:47886287-47886587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):93, 63

               
               
               Conread position:72-376
               
               
               Cow position:chr1:100762267-100761966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 69

               
               
               Conread position:72-377
               
               
               Cow position:chr1:34856432-34856742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:72-382
               
               
               Cow position:chr1:100324565-100324858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:72-384
               
               
               Cow position:chr1:6078093-6077781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):42, 171

               
               
               Conread position:72-384
               
               
               Cow position:chr1:24581759-24581466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):190, 22

               
               
               Conread position:72-384
               
               
               Cow position:chr1:72813810-72813495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):72, 33

               
               
               Conread position:72-384
               
               
               Cow position:chr1:78810073-78809763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):87, 22

               
               
               Conread position:72-384
               
               
               Cow position:chr1:100741475-100741170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 112

               
               
               Conread position:72-384
               
               
               Cow position:chr1:101634892-101634587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):210, 80

               
               
               Conread position:72-389
               
               
               Cow position:chr1:67585744-67585422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):188, 72

               
               
               Conread position:72-394
               
               
               Cow position:chr1:47288437-47288112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):75, 122

               
               
               Conread position:73-220
               
               
               Cow position:chr1:25956088-25955941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:73-379
               
               
               Cow position:chr1:71078770-71079070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 89

               
               
               Conread position:73-384
               
               
               Cow position:chr1:89381466-89381157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 78

               
               
               Conread position:74-303
               
               
               Cow position:chr1:33775448-33775682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:74-374
               
               
               Cow position:chr1:77425420-77425719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 113

               
               
               Conread position:74-378
               
               
               Cow position:chr1:98453786-98453475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):86, 66

               
               
               Conread position:74-379
               
               
               Cow position:chr1:98060250-98059937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):161, 67

               
               
               Conread position:74-383
               
               
               Cow position:chr1:17196434-17196746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:74-383
               
               
               Cow position:chr1:43388863-43389166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 57

               
               
               Conread position:74-384
               
               
               Cow position:chr1:95499305-95499610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):196, 77

               
               
               Conread position:74-384
               
               
               Cow position:chr1:97090508-97090210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):190, 12

               
               
               Conread position:75-384
               
               
               Cow position:chr1:98031105-98030801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 16

               
               
               Conread position:76-378
               
               
               Cow position:chr1:2975800-2976105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):70, 97

               
               
               Conread position:76-378
               
               
               Cow position:chr1:93528883-93528587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):135, 51

               
               
               Conread position:78-384
               
               
               Cow position:chr1:42968129-42968431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:79-283
               
               
               Cow position:chr1:69940638-69940841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):185, 49

               
               
               Conread position:79-338
               
               
               Cow position:chr1:92032413-92032673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):66, 7

               
               
               Conread position:79-339
               
               
               Cow position:chr1:89157944-89158202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):185, 63

               
               
               Conread position:79-354
               
               
               Cow position:chr1:5128641-5128356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):75, 97

               
               
               Conread position:79-366
               
               
               Cow position:chr1:1499504-1499790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):65, 205

               
               
               Conread position:79-384
               
               
               Cow position:chr1:91816582-91816887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):80, 97

               
               
               Conread position:80-262
               
               
               Cow position:chr1:34731232-34731047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 98

               
               
               Conread position:80-351
               
               
               Cow position:chr1:33914016-33913736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):76, 88

               
               
               Conread position:80-352
               
               
               Cow position:chr1:101791932-101792200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 81

               
               
               Conread position:80-378
               
               
               Cow position:chr1:3419992-3419694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):82, 92

               
               
               Conread position:80-378
               
               
               Cow position:chr1:101714895-101715195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):110, 130

               
               
               Conread position:83-384
               
               
               Cow position:chr1:65904813-65905124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):86, 43

               
               
               Conread position:83-384
               
               
               Cow position:chr1:68276596-68276293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):78, 103

               
               
               Conread position:83-384
               
               
               Cow position:chr1:70297464-70297160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):31, 94

               
               
               Conread position:83-384
               
               
               Cow position:chr1:72104036-72103729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):56, 94

               
               
               Conread position:87-368
               
               
               Cow position:chr1:13637487-13637766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):177, 59

               
               
               Conread position:87-384
               
               
               Cow position:chr1:51770273-51769970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):57, 102

               
               
               Conread position:87-384
               
               
               Cow position:chr1:53398151-53397874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):177, 54

               
               
               Conread position:87-384
               
               
               Cow position:chr1:91811960-91811670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):50, 152

               
               
               Conread position:90-350
               
               
               Cow position:chr1:37124302-37124042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):90, 37

               
               
               Conread position:90-379
               
               
               Cow position:chr1:79660223-79660513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):62, 39

               
               
               Conread position:90-384
               
               
               Cow position:chr1:88926204-88926506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):57, 88

               
               
               Conread position:91-384
               
               
               Cow position:chr1:96276879-96277172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):111, 39

               
               
               Conread position:91-385
               
               
               Cow position:chr1:31348261-31348560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:92-379
               
               
               Cow position:chr1:31607713-31608007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):49, 103

               
               
               Conread position:92-383
               
               
               Cow position:chr1:53458871-53458580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 23

               
               
               Conread position:92-384
               
               
               Cow position:chr1:84283249-84282956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):64, 102

               
               
               Conread position:95-384
               
               
               Cow position:chr1:76019527-76019810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):169, 56

               
               
               Conread position:97-384
               
               
               Cow position:chr1:50963959-50964246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):52, 81

               
               
               Conread position:98-256
               
               
               Cow position:chr1:83606280-83606440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):31, 65

               
               
               Conread position:98-352
               
               
               Cow position:chr1:12725360-12725611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):161, 75

               
               
               Conread position:98-378
               
               
               Cow position:chr1:635364-635083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):36, 66

               
               
               Conread position:98-378
               
               
               Cow position:chr1:53521081-53520800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):80, 54

               
               
               Conread position:98-384
               
               
               Cow position:chr1:24534094-24534371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):74, 28

               
               
               Conread position:98-397
               
               
               Cow position:chr1:89786079-89785781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):39, 92

               
               
               Conread position:102-367
               
               
               Cow position:chr1:51044145-51044406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):162, 83

               
               
               Conread position:105-280
               
               
               Cow position:chr1:19962209-19962038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):159, 39

               
               
               Conread position:105-355
               
               
               Cow position:chr1:92516831-92517084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):64, 39

               
               
               Conread position:105-383
               
               
               Cow position:chr1:52039793-52039520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):159, 41

               
               
               Conread position:108-384
               
               
               Cow position:chr1:86073750-86073477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):158, 34

               
               
               Conread position:114-373
               
               
               Cow position:chr1:1964895-1964636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 62

               
               
               Conread position:127-384
               
               
               Cow position:chr1:94261672-94261425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):156, 25

               
               
               Conread position:128-347
               
               
               Cow position:chr1:52995166-52994940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:128-363
               
               
               Cow position:chr1:45670770-45670542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):136, 90

               
               
               Conread position:128-378
               
               
               Cow position:chr1:57297627-57297365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):62, 33

               
               
               Conread position:128-378
               
               
               Cow position:chr1:84255903-84255652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-382
               
               
               Cow position:chr1:18780193-18780449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):112, 31

               
               
               Conread position:128-384
               
               
               Cow position:chr1:71253420-71253670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):139, 24

               
               
               Conread position:128-384
               
               
               Cow position:chr1:81613526-81613272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 9

               
               
               Conread position:128-384
               
               
               Cow position:chr1:85549940-85550195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):10, 24

               
               
               Conread position:128-384
               
               
               Cow position:chr1:85647648-85647899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):139, 14

               
               
               Conread position:128-399
               
               
               Cow position:chr1:39509920-39510179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):135, 160

               
               
               Conread position:129-301
               
               
               Cow position:chr1:8670909-8670738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):135, 18

               
               
               Conread position:129-332
               
               
               Cow position:chr1:78067933-78068130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):42, 32

               
               
               Conread position:129-348
               
               
               Cow position:chr1:80841783-80841571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:129-355
               
               
               Cow position:chr1:50992069-50991846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):135, 22

               
               
               Conread position:129-378
               
               
               Cow position:chr1:80422409-80422169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):174, 102

               
               
               Conread position:129-382
               
               
               Cow position:chr1:101632205-101632454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):135, 16

               
               
               Conread position:129-384
               
               
               Cow position:chr1:3166937-3167186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):25, 94

               
               
               Conread position:129-384
               
               
               Cow position:chr1:3882322-3882582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:129-384
               
               
               Cow position:chr1:5539137-5539394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):18, 47

               
               
               Conread position:129-384
               
               
               Cow position:chr1:34300416-34300667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):141, 18

               
               
               Conread position:130-379
               
               
               Cow position:chr1:7023257-7023008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):133, 188

               
               
               Conread position:130-385
               
               
               Cow position:chr1:98461422-98461175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):133, 178

               
               
               Conread position:131-255
               
               
               Cow position:chr1:84288535-84288414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:131-272
               
               
               Cow position:chr1:97750484-97750626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:131-289
               
               
               Cow position:chr1:808685-808845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:131-309
               
               
               Cow position:chr1:49153451-49153273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):133, 51

               
               
               Conread position:131-309
               
               
               Cow position:chr1:57091113-57090933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:131-335
               
               
               Cow position:chr1:86912575-86912370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):133, 154

               
               
               Conread position:131-343
               
               
               Cow position:chr1:68672467-68672676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):133, 87

               
               
               Conread position:131-343
               
               
               Cow position:chr1:98576182-98575969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):133, 142

               
               
               Conread position:131-352
               
               
               Cow position:chr1:95153357-95153134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):133, 119

               
               
               Conread position:131-373
               
               
               Cow position:chr1:37886677-37886916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):133, 105

               
               
               Conread position:131-377
               
               
               Cow position:chr1:81580312-81580066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):132, 88

               
               
               Conread position:131-383
               
               
               Cow position:chr1:39068821-39069071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):133, 154

               
               
               Conread position:131-383
               
               
               Cow position:chr1:47233343-47233595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 161

               
               
               Conread position:131-383
               
               
               Cow position:chr1:48730698-48730942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-383
               
               
               Cow position:chr1:77880600-77880852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:131-383
               
               
               Cow position:chr1:82884258-82884506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:131-383
               
               
               Cow position:chr1:93554969-93554727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):26, 37

               
               
               Conread position:131-384
               
               
               Cow position:chr1:19885516-19885271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):153, 95

               
               
               Conread position:131-384
               
               
               Cow position:chr1:41047169-41047417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):147, 22

               
               
               Conread position:131-384
               
               
               Cow position:chr1:53671615-53671856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):151, 108

               
               
               Conread position:131-384
               
               
               Cow position:chr1:57900589-57900856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):87, 174

               
               
               Conread position:131-384
               
               
               Cow position:chr1:68253730-68253474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):49, 189

               
               
               Conread position:131-384
               
               
               Cow position:chr1:83748078-83747829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 86

               
               
               Conread position:131-384
               
               
               Cow position:chr1:85162412-85162661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:131-384
               
               
               Cow position:chr1:98551852-98551599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):133, 25

               
               
               Conread position:131-385
               
               
               Cow position:chr1:90868312-90868558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):133, 34

               
               
               Conread position:131-411
               
               
               Cow position:chr1:78697636-78697910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 155

               
               
               Conread position:132-344
               
               
               Cow position:chr1:62036937-62036726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 146

               
               
               Conread position:132-377
               
               
               Cow position:chr1:67688451-67688691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):132, 14

               
               
               Conread position:132-379
               
               
               Cow position:chr1:45553111-45553356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:132-381
               
               
               Cow position:chr1:98512060-98511813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):132, 48

               
               
               Conread position:132-385
               
               
               Cow position:chr1:81913023-81913267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:132-394
               
               
               Cow position:chr1:5580189-5579924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):138, 37

               
               
               Conread position:133-348
               
               
               Cow position:chr1:25281524-25281742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:133-368
               
               
               Cow position:chr1:28177135-28176908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):137, 13

               
               
               Conread position:133-377
               
               
               Cow position:chr1:92989725-92989479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 56

               
               
               Conread position:133-384
               
               
               Cow position:chr1:89341847-89342112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:133-384
               
               
               Cow position:chr1:91874784-91875026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):131, 70

               
               
               Conread position:133-384
               
               
               Cow position:chr1:100569287-100569034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:133-403
               
               
               Cow position:chr1:6972658-6972393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):131, 5

               
               
               Conread position:134-383
               
               
               Cow position:chr1:74822581-74822339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):53, 18

               
               
               Conread position:135-365
               
               
               Cow position:chr1:4032763-4032530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:135-378
               
               
               Cow position:chr1:4291295-4291049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):100, 86

               
               
               Conread position:135-382
               
               
               Cow position:chr1:5135580-5135809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:135-382
               
               
               Cow position:chr1:69264939-69264700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):129, 110

               
               
               Conread position:135-382
               
               
               Cow position:chr1:100800480-100800241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):106, 17

               
               
               Conread position:136-382
               
               
               Cow position:chr1:83582805-83583049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):128, 11

               
               
               Conread position:136-394
               
               
               Cow position:chr1:3789942-3790194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):129, 10

               
               
               Conread position:141-384
               
               
               Cow position:chr1:88652761-88652513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):84, 158

               
               
               Conread position:146-329
               
               
               Cow position:chr1:93044137-93043957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):118, 94

               
               
               Conread position:146-362
               
               
               Cow position:chr1:30417928-30418133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):144, 103

               
               
               Conread position:146-374
               
               
               Cow position:chr1:41252290-41252508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):104, 86

               
               
               Conread position:146-384
               
               
               Cow position:chr1:41115599-41115832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):115, 81

               
               
               Conread position:146-385
               
               
               Cow position:chr1:95177057-95176820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):118, 28

               
               
               Conread position:147-297
               
               
               Cow position:chr1:92590310-92590167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:147-332
               
               
               Cow position:chr1:22827277-22827088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:147-368
               
               
               Cow position:chr1:98360285-98360499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):117, 63

               
               
               Conread position:147-369
               
               
               Cow position:chr1:24406778-24406996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):117, 130

               
               
               Conread position:147-378
               
               
               Cow position:chr1:100706245-100706022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):117, 90

               
               
               Conread position:147-384
               
               
               Cow position:chr1:72732159-72731921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):117, 27

               
               
               Conread position:147-384
               
               
               Cow position:chr1:89350084-89349845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:147-385
               
               
               Cow position:chr1:19466170-19465938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):117, 25

               
               
               Conread position:148-273
               
               
               Cow position:chr1:52429541-52429667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:148-384
               
               
               Cow position:chr1:42545661-42545904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:148-384
               
               
               Cow position:chr1:60281491-60281253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):116, 167

               
               
               Conread position:148-384
               
               
               Cow position:chr1:70380024-70380263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):9, 31

               
               
               Conread position:148-384
               
               
               Cow position:chr1:77683469-77683240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):116, 8

               
               
               Conread position:148-884
               
               
               Cow position:chr1:4581212-4581944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:739
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):115, 184

               
               
               Conread position:150-384
               
               
               Cow position:chr1:45288756-45288990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):114, 10

               
               
               Conread position:150-384
               
               
               Cow position:chr1:80900235-80900000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):114, 40

               
               
               Conread position:152-345
               
               
               Cow position:chr1:52467417-52467223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):59, 72

               
               
               Conread position:152-369
               
               
               Cow position:chr1:19226943-19227157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):112, 149

               
               
               Conread position:152-375
               
               
               Cow position:chr1:6752117-6752336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):106, 142

               
               
               Conread position:152-380
               
               
               Cow position:chr1:12978796-12978567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):112, 132

               
               
               Conread position:152-388
               
               
               Cow position:chr1:91039060-91039294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):111, 82

               
               
               Conread position:153-344
               
               
               Cow position:chr1:48769915-48769726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):111, 133

               
               
               Conread position:153-377
               
               
               Cow position:chr1:43822512-43822290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):111, 70

               
               
               Conread position:153-384
               
               
               Cow position:chr1:38401912-38401677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):58, 76

               
               
               Conread position:155-378
               
               
               Cow position:chr1:61542808-61543029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):109, 72

               
               
               Conread position:155-382
               
               
               Cow position:chr1:52052606-52052835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 32

               
               
               Conread position:155-383
               
               
               Cow position:chr1:44125527-44125763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):112, 67

               
               
               Conread position:155-384
               
               
               Cow position:chr1:30047492-30047711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 49

               
               
               Conread position:155-384
               
               
               Cow position:chr1:36932265-36932040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):109, 93

               
               
               Conread position:155-384
               
               
               Cow position:chr1:37309408-37309631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):109, 130

               
               
               Conread position:155-384
               
               
               Cow position:chr1:95215079-95215299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):16, 26

               
               
               Conread position:156-383
               
               
               Cow position:chr1:26702097-26702323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):113, 62

               
               
               Conread position:156-383
               
               
               Cow position:chr1:89230121-89230344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):108, 61

               
               
               Conread position:156-384
               
               
               Cow position:chr1:93810539-93810312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):108, 145

               
               
               Conread position:158-296
               
               
               Cow position:chr1:82556304-82556438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):108, 63

               
               
               Conread position:158-384
               
               
               Cow position:chr1:42555374-42555145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):106, 136

               
               
               Conread position:158-384
               
               
               Cow position:chr1:81355595-81355823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):75, 201

               
               
               Conread position:159-409
               
               
               Cow position:chr1:3720337-3720574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:160-378
               
               
               Cow position:chr1:60707508-60707298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 13

               
               
               Conread position:161-332
               
               
               Cow position:chr1:27380561-27380395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:161-379
               
               
               Cow position:chr1:55146902-55146690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):105, 13

               
               
               Conread position:161-379
               
               
               Cow position:chr1:75142102-75141892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):103, 124

               
               
               Conread position:161-384
               
               
               Cow position:chr1:4414104-4414325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):47, 62

               
               
               Conread position:161-384
               
               
               Cow position:chr1:62291596-62291808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):103, 64

               
               
               Conread position:161-384
               
               
               Cow position:chr1:81868624-81868843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):102, 116

               
               
               Conread position:161-384
               
               
               Cow position:chr1:100393058-100393278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):79, 119

               
               
               Conread position:162-367
               
               
               Cow position:chr1:56635202-56634995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:162-384
               
               
               Cow position:chr1:81563849-81563619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:163-399
               
               
               Cow position:chr1:7350650-7350412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):23, 5

               
               
               Conread position:168-384
               
               
               Cow position:chr1:20205125-20204910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):99, 54

               
               
               Conread position:168-384
               
               
               Cow position:chr1:43703507-43703290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):96, 117

               
               
               Conread position:169-384
               
               
               Cow position:chr1:53425273-53425057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):62, 5

               
               
               Conread position:177-384
               
               
               Cow position:chr1:6788194-6788403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):87, 118

               
               
               Conread position:179-382
               
               
               Cow position:chr1:70026258-70026459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 107

               
               
               Conread position:179-382
               
               
               Cow position:chr1:101946627-101946825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):85, 106

               
               
               Conread position:179-383
               
               
               Cow position:chr1:96478787-96478576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):87, 118

               
               
               Conread position:179-384
               
               
               Cow position:chr1:68951712-68951510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 32

               
               
               Conread position:181-343
               
               
               Cow position:chr1:26729798-26729640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):83, 24

               
               
               Conread position:181-379
               
               
               Cow position:chr1:98311157-98310956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:181-383
               
               
               Cow position:chr1:64250966-64251168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):5, 39

               
               
               Conread position:181-384
               
               
               Cow position:chr1:92434086-92433883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):5, 111

               
               
               Conread position:184-388
               
               
               Cow position:chr1:9470315-9470520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 111

               
               
               Conread position:185-347
               
               
               Cow position:chr1:61560642-61560807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:185-384
               
               
               Cow position:chr1:89498034-89497848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):108, 26

               
               
               Conread position:190-375
               
               
               Cow position:chr1:80904843-80904664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):74, 16

               
               
               Conread position:190-384
               
               
               Cow position:chr1:4374261-4374458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 125

               
               
               Conread position:190-384
               
               
               Cow position:chr1:55135912-55135716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):54, 107

               
               
               Conread position:190-384
               
               
               Cow position:chr1:87440543-87440351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):74, 11

               
               
               Conread position:192-379
               
               
               Cow position:chr1:91369935-91370121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):73, 61

               
               
               Conread position:192-384
               
               
               Cow position:chr1:79278373-79278564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:194-355
               
               
               Cow position:chr1:55088983-55089141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):100, 39

               
               
               Conread position:195-349
               
               
               Cow position:chr1:41695671-41695517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 8

               
               
               Conread position:195-368
               
               
               Cow position:chr1:69127095-69127264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):59, 68

               
               
               Conread position:198-384
               
               
               Cow position:chr1:1991350-1991538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:200-384
               
               
               Cow position:chr1:89508617-89508439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):7, 86

               
               
               Conread position:202-384
               
               
               Cow position:chr1:85301481-85301301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):102, 55

               
               
               Conread position:203-382
               
               
               Cow position:chr1:8984619-8984800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 115

               
               
               Conread position:204-382
               
               
               Cow position:chr1:24235457-24235632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):60, 81

               
               
               Conread position:204-384
               
               
               Cow position:chr1:60907439-60907253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:205-384
               
               
               Cow position:chr1:24445567-24445745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):59, 33

               
               
               Conread position:210-384
               
               
               Cow position:chr1:99136374-99136548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:223-383
               
               
               Cow position:chr1:45535750-45535589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:240-384
               
               
               Cow position:chr1:1403455-1403596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 48

               
               
               Conread position:259-384
               
               
               Cow position:chr1:41004353-41004480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:1-198
               
               
               Cow position:chr10:32440435-32440238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):121, 30

               
               
               Conread position:1-346
               
               
               Cow position:chr10:6569422-6569765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):161, 36

               
               
               Conread position:1-384
               
               
               Cow position:chr10:747709-747317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):26, 81

               
               
               Conread position:1-386
               
               
               Cow position:chr10:59009906-59010284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):62, 24

               
               
               Conread position:2-250
               
               
               Cow position:chr10:50051844-50052091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):144, 41

               
               
               Conread position:2-378
               
               
               Cow position:chr10:39939206-39939571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 36

               
               
               Conread position:3-260
               
               
               Cow position:chr10:43459824-43460076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:4-255
               
               
               Cow position:chr10:48814197-48814446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:4-332
               
               
               Cow position:chr10:25813543-25813208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:4-384
               
               
               Cow position:chr10:2613596-2613219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 27

               
               
               Conread position:5-376
               
               
               Cow position:chr10:25342818-25342463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):16, 141

               
               
               Conread position:6-384
               
               
               Cow position:chr10:8093098-8093461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):258, 17

               
               
               Conread position:9-274
               
               
               Cow position:chr10:23071519-23071783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):137, 22

               
               
               Conread position:10-344
               
               
               Cow position:chr10:26040-25717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):254, 39

               
               
               Conread position:11-378
               
               
               Cow position:chr10:30522839-30523205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 20

               
               
               Conread position:12-385
               
               
               Cow position:chr10:67442896-67443254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 141

               
               
               Conread position:13-296
               
               
               Cow position:chr10:6242299-6242569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 9

               
               
               Conread position:13-355
               
               
               Cow position:chr10:15868477-15868131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:19-383
               
               
               Cow position:chr10:38944470-38944110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):130, 11

               
               
               Conread position:21-368
               
               
               Cow position:chr10:29188137-29188485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):65, 22

               
               
               Conread position:22-250
               
               
               Cow position:chr10:34603436-34603656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):134, 26

               
               
               Conread position:22-272
               
               
               Cow position:chr10:35605258-35605013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:22-291
               
               
               Cow position:chr10:51879008-51879287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 157

               
               
               Conread position:25-238
               
               
               Cow position:chr10:58807543-58807746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:25-274
               
               
               Cow position:chr10:47159414-47159176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:25-331
               
               
               Cow position:chr10:51284196-51283890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):163, 25

               
               
               Conread position:25-384
               
               
               Cow position:chr10:52296709-52296353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):10, 208

               
               
               Conread position:26-273
               
               
               Cow position:chr10:53706831-53706584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):89, 24

               
               
               Conread position:26-385
               
               
               Cow position:chr10:37415993-37415639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 10

               
               
               Conread position:27-220
               
               
               Cow position:chr10:37258658-37258852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 16

               
               
               Conread position:27-273
               
               
               Cow position:chr10:54935920-54936168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):127, 37

               
               
               Conread position:27-332
               
               
               Cow position:chr10:10751781-10752085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):120, 26

               
               
               Conread position:27-378
               
               
               Cow position:chr10:41132471-41132131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):37, 119

               
               
               Conread position:27-379
               
               
               Cow position:chr10:10048885-10048542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):28, 39

               
               
               Conread position:28-238
               
               
               Cow position:chr10:9959423-9959214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):121, 25

               
               
               Conread position:28-242
               
               
               Cow position:chr10:58642106-58642317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:28-272
               
               
               Cow position:chr10:52125486-52125721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):137, 36

               
               
               Conread position:28-384
               
               
               Cow position:chr10:17022362-17022711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 64

               
               
               Conread position:28-384
               
               
               Cow position:chr10:26829598-26829965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 150

               
               
               Conread position:29-225
               
               
               Cow position:chr10:61039326-61039130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):32, 114

               
               
               Conread position:29-346
               
               
               Cow position:chr10:42231008-42230680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):93, 24

               
               
               Conread position:29-349
               
               
               Cow position:chr10:41408470-41408161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):230, 24

               
               
               Conread position:29-366
               
               
               Cow position:chr10:31004810-31005148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):235, 28

               
               
               Conread position:29-384
               
               
               Cow position:chr10:10148856-10148507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 248

               
               
               Conread position:29-384
               
               
               Cow position:chr10:24756611-24756269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 22

               
               
               Conread position:29-384
               
               
               Cow position:chr10:42313111-42312759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):113, 8

               
               
               Conread position:29-387
               
               
               Cow position:chr10:29102137-29102484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):21, 45

               
               
               Conread position:30-209
               
               
               Cow position:chr10:3562461-3562641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):20, 129

               
               
               Conread position:30-255
               
               
               Cow position:chr10:59004566-59004329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:30-548
               
               
               Cow position:chr10:5784047-5784563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):114, 151

               
               
               Conread position:31-234
               
               
               Cow position:chr10:60955310-60955513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):123, 32

               
               
               Conread position:31-235
               
               
               Cow position:chr10:16641724-16641930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:165
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):25, 121

               
               
               Conread position:31-241
               
               
               Cow position:chr10:62919287-62919497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):130, 34

               
               
               Conread position:31-260
               
               
               Cow position:chr10:43201141-43201368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 152

               
               
               Conread position:31-272
               
               
               Cow position:chr10:30121615-30121369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):113, 26

               
               
               Conread position:31-283
               
               
               Cow position:chr10:49923161-49923421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:192
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:31-299
               
               
               Cow position:chr10:58414361-58414643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):22, 69

               
               
               Conread position:31-373
               
               
               Cow position:chr10:31466942-31466614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):157, 22

               
               
               Conread position:31-376
               
               
               Cow position:chr10:28841158-28840814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):11, 66

               
               
               Conread position:31-382
               
               
               Cow position:chr10:25150088-25149748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):134, 22

               
               
               Conread position:31-384
               
               
               Cow position:chr10:4148691-4148332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):157, 19

               
               
               Conread position:31-384
               
               
               Cow position:chr10:45378797-45379152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):106, 158

               
               
               Conread position:31-384
               
               
               Cow position:chr10:45871725-45871369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):31, 233

               
               
               Conread position:31-384
               
               
               Cow position:chr10:50390965-50390633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):123, 17

               
               
               Conread position:31-384
               
               
               Cow position:chr10:64182646-64182303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):117, 33

               
               
               Conread position:32-234
               
               
               Cow position:chr10:61171457-61171260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):112, 34

               
               
               Conread position:32-369
               
               
               Cow position:chr10:46327893-46327556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:33-213
               
               
               Cow position:chr10:10104983-10104804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):25, 114

               
               
               Conread position:33-272
               
               
               Cow position:chr10:62454169-62454406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):116, 17

               
               
               Conread position:33-302
               
               
               Cow position:chr10:45337884-45337614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):102, 20

               
               
               Conread position:33-347
               
               
               Cow position:chr10:61511384-61511081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:33-384
               
               
               Cow position:chr10:24560788-24561132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):231, 31

               
               
               Conread position:33-384
               
               
               Cow position:chr10:27716638-27716989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):106, 17

               
               
               Conread position:33-385
               
               
               Cow position:chr10:16297150-16297482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):342, 20

               
               
               Conread position:34-272
               
               
               Cow position:chr10:32080468-32080238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):230, 93

               
               
               Conread position:34-360
               
               
               Cow position:chr10:33881578-33881906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):15, 139

               
               
               Conread position:34-383
               
               
               Cow position:chr10:2899879-2899535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):52, 122

               
               
               Conread position:34-384
               
               
               Cow position:chr10:10469167-10468834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):22, 55

               
               
               Conread position:35-265
               
               
               Cow position:chr10:48377197-48377426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:35-298
               
               
               Cow position:chr10:23127782-23128048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):52, 21

               
               
               Conread position:35-383
               
               
               Cow position:chr10:40107305-40106958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):25, 155

               
               
               Conread position:35-383
               
               
               Cow position:chr10:45371251-45370908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 18

               
               
               Conread position:35-384
               
               
               Cow position:chr10:37235345-37235697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 94

               
               
               Conread position:35-384
               
               
               Cow position:chr10:38942642-38942280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):20, 132

               
               
               Conread position:35-384
               
               
               Cow position:chr10:43487913-43487563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):114, 18

               
               
               Conread position:36-244
               
               
               Cow position:chr10:19503082-19503291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 28

               
               
               Conread position:36-257
               
               
               Cow position:chr10:65904444-65904225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:36-272
               
               
               Cow position:chr10:6516907-6516661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):24, 197

               
               
               Conread position:36-278
               
               
               Cow position:chr10:30746878-30746633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 53

               
               
               Conread position:37-241
               
               
               Cow position:chr10:3286706-3286906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):147, 27

               
               
               Conread position:37-332
               
               
               Cow position:chr10:9309407-9309129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):123, 84

               
               
               Conread position:37-378
               
               
               Cow position:chr10:46830066-46829734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):117, 28

               
               
               Conread position:37-384
               
               
               Cow position:chr10:37014833-37014488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:249
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):107, 27

               
               
               Conread position:37-384
               
               
               Cow position:chr10:66199507-66199857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:38-213
               
               
               Cow position:chr10:31202572-31202399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):27, 52

               
               
               Conread position:38-252
               
               
               Cow position:chr10:25968362-25968152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:38-295
               
               
               Cow position:chr10:37425940-37426193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):23, 54

               
               
               Conread position:38-378
               
               
               Cow position:chr10:50533683-50534011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):226, 25

               
               
               Conread position:38-384
               
               
               Cow position:chr10:13311944-13311588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):11, 191

               
               
               Conread position:38-385
               
               
               Cow position:chr10:4109774-4109441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):225, 26

               
               
               Conread position:39-285
               
               
               Cow position:chr10:17567908-17568151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 41

               
               
               Conread position:39-316
               
               
               Cow position:chr10:43586088-43586367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 109

               
               
               Conread position:39-332
               
               
               Cow position:chr10:63884141-63883845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:39-352
               
               
               Cow position:chr10:19099022-19098722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):225, 18

               
               
               Conread position:39-368
               
               
               Cow position:chr10:42637423-42637095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:39-385
               
               
               Cow position:chr10:63940966-63940624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 17

               
               
               Conread position:40-152
               
               
               Cow position:chr10:54819739-54819629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:40-213
               
               
               Cow position:chr10:35026899-35026728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):106, 17

               
               
               Conread position:40-238
               
               
               Cow position:chr10:15383522-15383325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):106, 12

               
               
               Conread position:40-265
               
               
               Cow position:chr10:39258302-39258523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 12

               
               
               Conread position:40-368
               
               
               Cow position:chr10:24004269-24004601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:40-384
               
               
               Cow position:chr10:35862037-35862374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:40-420
               
               
               Cow position:chr10:16986533-16986148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):20, 158

               
               
               Conread position:41-260
               
               
               Cow position:chr10:12253233-12253451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 108

               
               
               Conread position:41-268
               
               
               Cow position:chr10:20448112-20447884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:41-338
               
               
               Cow position:chr10:65582642-65582347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):23, 62

               
               
               Conread position:41-369
               
               
               Cow position:chr10:69934589-69934900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):123, 53

               
               
               Conread position:41-371
               
               
               Cow position:chr10:14396467-14396778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):113, 10

               
               
               Conread position:41-383
               
               
               Cow position:chr10:28721972-28721640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):223, 86

               
               
               Conread position:41-383
               
               
               Cow position:chr10:64227583-64227260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):338, 120

               
               
               Conread position:42-270
               
               
               Cow position:chr10:11112817-11112589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:42-368
               
               
               Cow position:chr10:10750049-10750384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:42-377
               
               
               Cow position:chr10:6664221-6663886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):222, 15

               
               
               Conread position:43-244
               
               
               Cow position:chr10:7309256-7309460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:43-384
               
               
               Cow position:chr10:6531974-6532299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):222, 48

               
               
               Conread position:43-384
               
               
               Cow position:chr10:28178623-28178956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):23, 50

               
               
               Conread position:44-282
               
               
               Cow position:chr10:39622173-39622400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:44-364
               
               
               Cow position:chr10:36399857-36400171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):105, 142

               
               
               Conread position:44-364
               
               
               Cow position:chr10:36400892-36401206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):105, 142

               
               
               Conread position:44-365
               
               
               Cow position:chr10:49942662-49942344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 20

               
               
               Conread position:45-368
               
               
               Cow position:chr10:46850056-46849737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):107, 19

               
               
               Conread position:45-378
               
               
               Cow position:chr10:9656337-9656678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):219, 8

               
               
               Conread position:45-383
               
               
               Cow position:chr10:22616450-22616785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):21, 51

               
               
               Conread position:46-378
               
               
               Cow position:chr10:60236911-60237232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):216, 98

               
               
               Conread position:46-384
               
               
               Cow position:chr10:16598879-16598539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 18

               
               
               Conread position:46-384
               
               
               Cow position:chr10:31362029-31362355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):16, 81

               
               
               Conread position:47-367
               
               
               Cow position:chr10:52881430-52881750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:47-376
               
               
               Cow position:chr10:63276576-63276253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):83, 17

               
               
               Conread position:47-383
               
               
               Cow position:chr10:22341760-22341422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):118, 6

               
               
               Conread position:47-384
               
               
               Cow position:chr10:10120377-10120051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:47-384
               
               
               Cow position:chr10:16414386-16414733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 99

               
               
               Conread position:47-385
               
               
               Cow position:chr10:39874953-39875294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 263

               
               
               Conread position:48-230
               
               
               Cow position:chr10:9797727-9797904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):106, 5

               
               
               Conread position:48-259
               
               
               Cow position:chr10:17077557-17077760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:48-265
               
               
               Cow position:chr10:27178673-27178467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:48-331
               
               
               Cow position:chr10:10138046-10137773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):216, 9

               
               
               Conread position:48-339
               
               
               Cow position:chr10:67379482-67379196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):98, 16

               
               
               Conread position:48-342
               
               
               Cow position:chr10:11059943-11059651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):78, 16

               
               
               Conread position:48-368
               
               
               Cow position:chr10:16645002-16645320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):96, 5

               
               
               Conread position:48-368
               
               
               Cow position:chr10:25936425-25936110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:48-382
               
               
               Cow position:chr10:8404395-8404069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):19, 72

               
               
               Conread position:48-384
               
               
               Cow position:chr10:19103995-19104320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):322, 187

               
               
               Conread position:48-384
               
               
               Cow position:chr10:33666027-33665691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 5

               
               
               Conread position:48-384
               
               
               Cow position:chr10:35245766-35246087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:239
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):219, 91

               
               
               Conread position:48-384
               
               
               Cow position:chr10:39387637-39387312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):18, 73

               
               
               Conread position:48-409
               
               
               Cow position:chr10:32417530-32417183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):196, 43

               
               
               Conread position:49-176
               
               
               Cow position:chr10:5265475-5265345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):12, 84

               
               
               Conread position:49-255
               
               
               Cow position:chr10:58148983-58149188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):17, 104

               
               
               Conread position:49-332
               
               
               Cow position:chr10:3363999-3364280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):201, 45

               
               
               Conread position:49-352
               
               
               Cow position:chr10:31528152-31527862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):215, 15

               
               
               Conread position:49-373
               
               
               Cow position:chr10:62220025-62219690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 15

               
               
               Conread position:49-384
               
               
               Cow position:chr10:5599811-5600140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):17, 239

               
               
               Conread position:49-384
               
               
               Cow position:chr10:31534926-31534595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):17, 132

               
               
               Conread position:49-384
               
               
               Cow position:chr10:34654925-34655260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 78

               
               
               Conread position:49-384
               
               
               Cow position:chr10:56079975-56080318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 144

               
               
               Conread position:50-206
               
               
               Cow position:chr10:60240035-60240189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:50-216
               
               
               Cow position:chr10:18849707-18849543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):114, 14

               
               
               Conread position:50-220
               
               
               Cow position:chr10:58066002-58066173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):9, 45

               
               
               Conread position:50-223
               
               
               Cow position:chr10:32829421-32829243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:50-225
               
               
               Cow position:chr10:55270831-55271014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:50-238
               
               
               Cow position:chr10:3986075-3985888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:50-238
               
               
               Cow position:chr10:4626709-4626522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 7

               
               
               Conread position:50-238
               
               
               Cow position:chr10:15601991-15602183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:50-245
               
               
               Cow position:chr10:28843547-28843349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 103

               
               
               Conread position:50-247
               
               
               Cow position:chr10:59203795-59203599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):97, 140

               
               
               Conread position:50-250
               
               
               Cow position:chr10:55069390-55069195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:50-252
               
               
               Cow position:chr10:17448024-17448214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:50-269
               
               
               Cow position:chr10:22980795-22981011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:50-274
               
               
               Cow position:chr10:10153192-10152971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):10, 90

               
               
               Conread position:50-282
               
               
               Cow position:chr10:23310841-23311074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):94, 177

               
               
               Conread position:50-282
               
               
               Cow position:chr10:31718197-31718430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:50-283
               
               
               Cow position:chr10:35981776-35981542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:50-288
               
               
               Cow position:chr10:35090236-35089996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):97, 14

               
               
               Conread position:50-290
               
               
               Cow position:chr10:23341078-23340851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):214, 159

               
               
               Conread position:50-320
               
               
               Cow position:chr10:5465618-5465890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):54, 119

               
               
               Conread position:50-325
               
               
               Cow position:chr10:23390133-23390405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):16, 67

               
               
               Conread position:50-343
               
               
               Cow position:chr10:55395792-55396084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:50-361
               
               
               Cow position:chr10:34674199-34673896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):115, 88

               
               
               Conread position:50-374
               
               
               Cow position:chr10:13586888-13586571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):88, 42

               
               
               Conread position:50-376
               
               
               Cow position:chr10:55064078-55063754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):119, 45

               
               
               Conread position:50-378
               
               
               Cow position:chr10:2973887-2974220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):48, 145

               
               
               Conread position:50-378
               
               
               Cow position:chr10:27118777-27119108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 77

               
               
               Conread position:50-378
               
               
               Cow position:chr10:48679079-48679405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):16, 126

               
               
               Conread position:50-378
               
               
               Cow position:chr10:57059087-57059424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):11, 133

               
               
               Conread position:50-383
               
               
               Cow position:chr10:50182869-50183195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):115, 90

               
               
               Conread position:50-384
               
               
               Cow position:chr10:4184390-4184044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 260

               
               
               Conread position:50-384
               
               
               Cow position:chr10:7817304-7816960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 33

               
               
               Conread position:50-384
               
               
               Cow position:chr10:11463475-11463814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 143

               
               
               Conread position:50-384
               
               
               Cow position:chr10:19895581-19895251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):17, 122

               
               
               Conread position:50-384
               
               
               Cow position:chr10:23055908-23056226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 36

               
               
               Conread position:50-384
               
               
               Cow position:chr10:31027456-31027793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 267

               
               
               Conread position:50-384
               
               
               Cow position:chr10:35792113-35791785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 207

               
               
               Conread position:50-384
               
               
               Cow position:chr10:37818369-37818704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 113

               
               
               Conread position:50-384
               
               
               Cow position:chr10:38133296-38133629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):101, 30

               
               
               Conread position:50-384
               
               
               Cow position:chr10:44730289-44730626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):91, 138

               
               
               Conread position:50-384
               
               
               Cow position:chr10:61588072-61588410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):94, 231

               
               
               Conread position:50-384
               
               
               Cow position:chr10:64042269-64041937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 124

               
               
               Conread position:50-384
               
               
               Cow position:chr10:65071508-65071163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):10, 245

               
               
               Conread position:50-386
               
               
               Cow position:chr10:29361119-29360757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 138

               
               
               Conread position:50-388
               
               
               Cow position:chr10:39124322-39123979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):16, 108

               
               
               Conread position:50-396
               
               
               Cow position:chr10:11256254-11255916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):209, 92

               
               
               Conread position:51-252
               
               
               Cow position:chr10:49029833-49029639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:51-257
               
               
               Cow position:chr10:40999041-40998835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):153, 94

               
               
               Conread position:51-332
               
               
               Cow position:chr10:30369643-30369920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):141, 34

               
               
               Conread position:51-376
               
               
               Cow position:chr10:8161689-8161363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):95, 6

               
               
               Conread position:51-382
               
               
               Cow position:chr10:33215975-33215655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 13

               
               
               Conread position:51-384
               
               
               Cow position:chr10:3999075-3998756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):13, 59

               
               
               Conread position:51-384
               
               
               Cow position:chr10:54848962-54848629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 96

               
               
               Conread position:51-384
               
               
               Cow position:chr10:62286749-62286405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 244

               
               
               Conread position:52-215
               
               
               Cow position:chr10:8891105-8891268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-233
               
               
               Cow position:chr10:47430005-47429832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:52-303
               
               
               Cow position:chr10:68208441-68208179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):75, 12

               
               
               Conread position:52-326
               
               
               Cow position:chr10:24448042-24447773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):148, 40

               
               
               Conread position:52-343
               
               
               Cow position:chr10:56136688-56136389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):68, 135

               
               
               Conread position:52-383
               
               
               Cow position:chr10:20553364-20553036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 42

               
               
               Conread position:52-383
               
               
               Cow position:chr10:56475636-56475319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):185, 12

               
               
               Conread position:52-384
               
               
               Cow position:chr10:6852445-6852124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):228, 19

               
               
               Conread position:52-384
               
               
               Cow position:chr10:11081154-11080814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:52-384
               
               
               Cow position:chr10:21657595-21657276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 58

               
               
               Conread position:52-384
               
               
               Cow position:chr10:22508994-22509330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):95, 121

               
               
               Conread position:52-384
               
               
               Cow position:chr10:50558747-50559074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 58

               
               
               Conread position:53-203
               
               
               Cow position:chr10:33694550-33694408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:53-218
               
               
               Cow position:chr10:38329828-38329661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:53-220
               
               
               Cow position:chr10:14668580-14668414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:53-225
               
               
               Cow position:chr10:32799075-32799247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):77, 103

               
               
               Conread position:53-233
               
               
               Cow position:chr10:4329811-4329994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:53-235
               
               
               Cow position:chr10:30836850-30837035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):91, 173

               
               
               Conread position:53-244
               
               
               Cow position:chr10:19394383-19394578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 134

               
               
               Conread position:53-257
               
               
               Cow position:chr10:59417056-59417256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:53-257
               
               
               Cow position:chr10:69840530-69840332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:53-261
               
               
               Cow position:chr10:49862645-49862445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:53-272
               
               
               Cow position:chr10:20485376-20485596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 101

               
               
               Conread position:53-274
               
               
               Cow position:chr10:38205533-38205749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:53-283
               
               
               Cow position:chr10:704804-705043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:53-326
               
               
               Cow position:chr10:66365486-66365204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):88, 205

               
               
               Conread position:53-341
               
               
               Cow position:chr10:33573065-33573345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:53-343
               
               
               Cow position:chr10:33084247-33084543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):45, 189

               
               
               Conread position:53-345
               
               
               Cow position:chr10:46934596-46934893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):93, 120

               
               
               Conread position:53-346
               
               
               Cow position:chr10:66320898-66321192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):104, 124

               
               
               Conread position:53-378
               
               
               Cow position:chr10:13368538-13368210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):81, 11

               
               
               Conread position:53-378
               
               
               Cow position:chr10:35653850-35653529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):74, 91

               
               
               Conread position:53-382
               
               
               Cow position:chr10:40147448-40147782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):115, 90

               
               
               Conread position:53-383
               
               
               Cow position:chr10:2449534-2449206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):70, 104

               
               
               Conread position:53-383
               
               
               Cow position:chr10:24312711-24313035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):111, 11

               
               
               Conread position:53-383
               
               
               Cow position:chr10:29166462-29166136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 169

               
               
               Conread position:53-383
               
               
               Cow position:chr10:38376493-38376798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):211, 68

               
               
               Conread position:53-384
               
               
               Cow position:chr10:2201953-2202272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):155, 38

               
               
               Conread position:53-384
               
               
               Cow position:chr10:5889576-5889917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):17, 131

               
               
               Conread position:53-384
               
               
               Cow position:chr10:6720083-6719753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):91, 35

               
               
               Conread position:53-384
               
               
               Cow position:chr10:10219828-10219498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:53-384
               
               
               Cow position:chr10:11009601-11009269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):68, 230

               
               
               Conread position:53-384
               
               
               Cow position:chr10:11966662-11966989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 111

               
               
               Conread position:53-384
               
               
               Cow position:chr10:14850401-14850078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):104, 38

               
               
               Conread position:53-384
               
               
               Cow position:chr10:19372152-19372485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 249

               
               
               Conread position:53-384
               
               
               Cow position:chr10:33890918-33891237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):207, 11

               
               
               Conread position:53-384
               
               
               Cow position:chr10:34607746-34607414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):101, 122

               
               
               Conread position:53-384
               
               
               Cow position:chr10:51944540-51944211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 67

               
               
               Conread position:53-384
               
               
               Cow position:chr10:52569776-52569444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:53-411
               
               
               Cow position:chr10:50109716-50110081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):91, 127

               
               
               Conread position:54-254
               
               
               Cow position:chr10:37375564-37375766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:54-255
               
               
               Cow position:chr10:53563937-53564139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:54-262
               
               
               Cow position:chr10:38386047-38386264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):84, 183

               
               
               Conread position:54-364
               
               
               Cow position:chr10:38355921-38356232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):90, 126

               
               
               Conread position:54-369
               
               
               Cow position:chr10:45623995-45624282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):192, 29

               
               
               Conread position:54-377
               
               
               Cow position:chr10:45476038-45476354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):93, 133

               
               
               Conread position:54-379
               
               
               Cow position:chr10:23576721-23576401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):210, 72

               
               
               Conread position:54-383
               
               
               Cow position:chr10:67626820-67627141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):211, 40

               
               
               Conread position:54-384
               
               
               Cow position:chr10:23912331-23912644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):74, 38

               
               
               Conread position:54-384
               
               
               Cow position:chr10:48316763-48317104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):95, 180

               
               
               Conread position:54-384
               
               
               Cow position:chr10:57786517-57786192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 74

               
               
               Conread position:55-295
               
               
               Cow position:chr10:43272861-43273105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):85, 38

               
               
               Conread position:55-352
               
               
               Cow position:chr10:45728780-45729053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 66

               
               
               Conread position:55-378
               
               
               Cow position:chr10:60961127-60960799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):11, 257

               
               
               Conread position:55-382
               
               
               Cow position:chr10:64285620-64285938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):209, 73

               
               
               Conread position:55-384
               
               
               Cow position:chr10:34661151-34661461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 37

               
               
               Conread position:55-384
               
               
               Cow position:chr10:47773900-47773582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):209, 37

               
               
               Conread position:55-384
               
               
               Cow position:chr10:54504784-54504458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 100

               
               
               Conread position:56-229
               
               
               Cow position:chr10:30801504-30801326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):15, 134

               
               
               Conread position:56-384
               
               
               Cow position:chr10:12486423-12486116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):208, 35

               
               
               Conread position:56-384
               
               
               Cow position:chr10:35731349-35731670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 83

               
               
               Conread position:56-384
               
               
               Cow position:chr10:37529095-37529413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 72

               
               
               Conread position:56-384
               
               
               Cow position:chr10:37708847-37709181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):207, 71

               
               
               Conread position:56-384
               
               
               Cow position:chr10:40163755-40164081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 89

               
               
               Conread position:56-385
               
               
               Cow position:chr10:37295495-37295813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 15

               
               
               Conread position:57-157
               
               
               Cow position:chr10:52824995-52825095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-214
               
               
               Cow position:chr10:17065822-17065669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):81, 16

               
               
               Conread position:57-217
               
               
               Cow position:chr10:24035841-24036001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-220
               
               
               Cow position:chr10:21348817-21348971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:57-230
               
               
               Cow position:chr10:38195796-38195970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):87, 120

               
               
               Conread position:57-234
               
               
               Cow position:chr10:28571580-28571403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):90, 130

               
               
               Conread position:57-237
               
               
               Cow position:chr10:18751298-18751476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:57-237
               
               
               Cow position:chr10:57095027-57095201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:57-250
               
               
               Cow position:chr10:14188438-14188624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:57-253
               
               
               Cow position:chr10:1054566-1054384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:57-253
               
               
               Cow position:chr10:34903651-34903462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:57-256
               
               
               Cow position:chr10:46799315-46799122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:57-257
               
               
               Cow position:chr10:24971153-24971347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:57-258
               
               
               Cow position:chr10:10829219-10829021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:161
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:57-273
               
               
               Cow position:chr10:32929164-32928938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:57-274
               
               
               Cow position:chr10:45623611-45623824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):129, 70

               
               
               Conread position:57-282
               
               
               Cow position:chr10:17150049-17149833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:177
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):210, 16

               
               
               Conread position:57-282
               
               
               Cow position:chr10:38995413-38995182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:57-300
               
               
               Cow position:chr10:2185535-2185288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):61, 151

               
               
               Conread position:57-307
               
               
               Cow position:chr10:11047027-11047270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):78, 56

               
               
               Conread position:57-319
               
               
               Cow position:chr10:41676237-41676495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):188, 83

               
               
               Conread position:57-329
               
               
               Cow position:chr10:23346129-23346396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 83

               
               
               Conread position:57-329
               
               
               Cow position:chr10:60491085-60491351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):69, 38

               
               
               Conread position:57-352
               
               
               Cow position:chr10:61509769-61510056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 82

               
               
               Conread position:57-368
               
               
               Cow position:chr10:60446908-60446601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 86

               
               
               Conread position:57-379
               
               
               Cow position:chr10:763083-762777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):245, 35

               
               
               Conread position:57-381
               
               
               Cow position:chr10:6436235-6435914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):207, 84

               
               
               Conread position:57-382
               
               
               Cow position:chr10:47690575-47690244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):80, 37

               
               
               Conread position:57-382
               
               
               Cow position:chr10:62353635-62353318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 83

               
               
               Conread position:57-383
               
               
               Cow position:chr10:54947966-54948283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):153, 70

               
               
               Conread position:57-384
               
               
               Cow position:chr10:9575871-9576185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 89

               
               
               Conread position:57-384
               
               
               Cow position:chr10:15817620-15817940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 34

               
               
               Conread position:57-384
               
               
               Cow position:chr10:20095945-20095610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 90

               
               
               Conread position:57-384
               
               
               Cow position:chr10:22390776-22390441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 92

               
               
               Conread position:57-384
               
               
               Cow position:chr10:31400721-31401042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 34

               
               
               Conread position:57-384
               
               
               Cow position:chr10:35901499-35901182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 111

               
               
               Conread position:57-384
               
               
               Cow position:chr10:39228341-39227998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:57-384
               
               
               Cow position:chr10:57461531-57461207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):207, 66

               
               
               Conread position:57-384
               
               
               Cow position:chr10:65345286-65345616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):64, 237

               
               
               Conread position:57-384
               
               
               Cow position:chr10:68927325-68927006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:57-387
               
               
               Cow position:chr10:53076307-53075971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:249
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):70, 109

               
               
               Conread position:57-388
               
               
               Cow position:chr10:13764986-13765316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 94

               
               
               Conread position:57-404
               
               
               Cow position:chr10:12392424-12392771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 132

               
               
               Conread position:58-215
               
               
               Cow position:chr10:25475709-25475554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:58-247
               
               
               Cow position:chr10:45168914-45169102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):14, 70

               
               
               Conread position:58-257
               
               
               Cow position:chr10:19679282-19679077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:58-325
               
               
               Cow position:chr10:19191930-19191671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 87

               
               
               Conread position:58-378
               
               
               Cow position:chr10:17837130-17836811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 29

               
               
               Conread position:58-384
               
               
               Cow position:chr10:51069248-51068912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):98, 131

               
               
               Conread position:58-384
               
               
               Cow position:chr10:55733433-55733747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 82

               
               
               Conread position:59-238
               
               
               Cow position:chr10:1698565-1698746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):97, 119

               
               
               Conread position:59-249
               
               
               Cow position:chr10:44758984-44758796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):107, 90

               
               
               Conread position:59-250
               
               
               Cow position:chr10:11060356-11060541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:59-255
               
               
               Cow position:chr10:14542048-14541852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):90, 103

               
               
               Conread position:59-255
               
               
               Cow position:chr10:28223392-28223195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 128

               
               
               Conread position:59-258
               
               
               Cow position:chr10:6719153-6718952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):87, 118

               
               
               Conread position:59-272
               
               
               Cow position:chr10:30261431-30261639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):205, 30

               
               
               Conread position:59-282
               
               
               Cow position:chr10:60697453-60697670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 91

               
               
               Conread position:59-302
               
               
               Cow position:chr10:2535738-2535505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):205, 34

               
               
               Conread position:59-321
               
               
               Cow position:chr10:4711776-4711517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 128

               
               
               Conread position:59-344
               
               
               Cow position:chr10:63484813-63484534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):200, 79

               
               
               Conread position:59-345
               
               
               Cow position:chr10:48178515-48178245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):205, 42

               
               
               Conread position:59-348
               
               
               Cow position:chr10:19539649-19539931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):85, 11

               
               
               Conread position:59-358
               
               
               Cow position:chr10:29328222-29328508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:59-364
               
               
               Cow position:chr10:55577503-55577191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 128

               
               
               Conread position:59-373
               
               
               Cow position:chr10:36531549-36531868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):85, 128

               
               
               Conread position:59-377
               
               
               Cow position:chr10:38241256-38240944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):113, 82

               
               
               Conread position:59-378
               
               
               Cow position:chr10:43531443-43531119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):80, 67

               
               
               Conread position:59-379
               
               
               Cow position:chr10:40738166-40737861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):201, 68

               
               
               Conread position:59-382
               
               
               Cow position:chr10:38370276-38370604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):85, 104

               
               
               Conread position:59-383
               
               
               Cow position:chr10:21082550-21082238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):12, 64

               
               
               Conread position:59-384
               
               
               Cow position:chr10:6490054-6489722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:59-384
               
               
               Cow position:chr10:7304740-7304425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):107, 11

               
               
               Conread position:59-384
               
               
               Cow position:chr10:28176226-28176537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):205, 51

               
               
               Conread position:59-384
               
               
               Cow position:chr10:37512064-37512392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):98, 33

               
               
               Conread position:59-384
               
               
               Cow position:chr10:49146683-49146373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 33

               
               
               Conread position:59-384
               
               
               Cow position:chr10:51803871-51804180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):86, 67

               
               
               Conread position:59-394
               
               
               Cow position:chr10:1978496-1978825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 87

               
               
               Conread position:60-197
               
               
               Cow position:chr10:48130190-48130056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:60-258
               
               
               Cow position:chr10:2984891-2985096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):76, 47

               
               
               Conread position:60-268
               
               
               Cow position:chr10:443747-443552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:60-306
               
               
               Cow position:chr10:25822079-25822313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):180, 81

               
               
               Conread position:60-321
               
               
               Cow position:chr10:55382492-55382229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):67, 204

               
               
               Conread position:60-340
               
               
               Cow position:chr10:34646281-34646550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):242, 26

               
               
               Conread position:60-344
               
               
               Cow position:chr10:5151527-5151237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):68, 153

               
               
               Conread position:60-344
               
               
               Cow position:chr10:48407308-48407030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):204, 23

               
               
               Conread position:60-347
               
               
               Cow position:chr10:22888643-22888926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 25

               
               
               Conread position:60-366
               
               
               Cow position:chr10:24753311-24753020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):199, 54

               
               
               Conread position:60-366
               
               
               Cow position:chr10:44771822-44771532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:60-369
               
               
               Cow position:chr10:4151729-4151414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):68, 229

               
               
               Conread position:60-372
               
               
               Cow position:chr10:3276143-3275858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:60-372
               
               
               Cow position:chr10:37068246-37068548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 85

               
               
               Conread position:60-374
               
               
               Cow position:chr10:45294965-45295277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):76, 24

               
               
               Conread position:60-382
               
               
               Cow position:chr10:1996499-1996807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):204, 81

               
               
               Conread position:60-383
               
               
               Cow position:chr10:14947428-14947115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 85

               
               
               Conread position:60-383
               
               
               Cow position:chr10:61921968-61922285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 91

               
               
               Conread position:60-384
               
               
               Cow position:chr10:6384700-6384388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 81

               
               
               Conread position:60-384
               
               
               Cow position:chr10:16093385-16093068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):204, 81

               
               
               Conread position:60-384
               
               
               Cow position:chr10:17073192-17073506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 82

               
               
               Conread position:60-384
               
               
               Cow position:chr10:24763672-24763330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):52, 160

               
               
               Conread position:60-384
               
               
               Cow position:chr10:28395129-28395447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 87

               
               
               Conread position:60-384
               
               
               Cow position:chr10:30353025-30352700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 82

               
               
               Conread position:60-384
               
               
               Cow position:chr10:66004052-66003726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):96, 130

               
               
               Conread position:61-224
               
               
               Cow position:chr10:1417766-1417609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:61-241
               
               
               Cow position:chr10:36855953-36856136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:61-270
               
               
               Cow position:chr10:37174279-37174487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:61-274
               
               
               Cow position:chr10:16830210-16830425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):89, 125

               
               
               Conread position:61-275
               
               
               Cow position:chr10:27544626-27544413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):175, 80

               
               
               Conread position:61-282
               
               
               Cow position:chr10:10634386-10634172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):203, 24

               
               
               Conread position:61-326
               
               
               Cow position:chr10:58043953-58044220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 97

               
               
               Conread position:61-369
               
               
               Cow position:chr10:23506315-23506621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):66, 31

               
               
               Conread position:61-371
               
               
               Cow position:chr10:25913607-25913929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):83, 142

               
               
               Conread position:61-379
               
               
               Cow position:chr10:33195219-33194888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):85, 110

               
               
               Conread position:61-383
               
               
               Cow position:chr10:15248865-15249191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):88, 128

               
               
               Conread position:61-383
               
               
               Cow position:chr10:17844939-17844622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):56, 78

               
               
               Conread position:61-383
               
               
               Cow position:chr10:39398345-39398661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):203, 65

               
               
               Conread position:61-384
               
               
               Cow position:chr10:2704358-2704062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):232, 57

               
               
               Conread position:61-384
               
               
               Cow position:chr10:8277729-8277400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):88, 125

               
               
               Conread position:61-384
               
               
               Cow position:chr10:21923343-21923668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):95, 128

               
               
               Conread position:61-384
               
               
               Cow position:chr10:24871345-24871017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):83, 227

               
               
               Conread position:61-384
               
               
               Cow position:chr10:38430393-38430712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):198, 65

               
               
               Conread position:61-390
               
               
               Cow position:chr10:58451207-58451525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 31

               
               
               Conread position:62-244
               
               
               Cow position:chr10:27136512-27136696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:62-259
               
               
               Cow position:chr10:55043467-55043665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):115, 147

               
               
               Conread position:62-272
               
               
               Cow position:chr10:55599981-55600193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):82, 40

               
               
               Conread position:62-282
               
               
               Cow position:chr10:46886323-46886110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:62-365
               
               
               Cow position:chr10:7383444-7383739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 83

               
               
               Conread position:62-379
               
               
               Cow position:chr10:30224844-30224544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):202, 59

               
               
               Conread position:62-383
               
               
               Cow position:chr10:10985339-10985636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):102, 64

               
               
               Conread position:62-384
               
               
               Cow position:chr10:59572065-59571754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 65

               
               
               Conread position:63-273
               
               
               Cow position:chr10:2857219-2857010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:167
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):25, 83

               
               
               Conread position:63-319
               
               
               Cow position:chr10:54776718-54776464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):91, 20

               
               
               Conread position:63-384
               
               
               Cow position:chr10:44764320-44764652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):71, 11

               
               
               Conread position:63-384
               
               
               Cow position:chr10:69564778-69564458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):47, 93

               
               
               Conread position:64-232
               
               
               Cow position:chr10:7089511-7089351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:64-257
               
               
               Cow position:chr10:6212441-6212623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:64-283
               
               
               Cow position:chr10:49634236-49634019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):200, 65

               
               
               Conread position:64-309
               
               
               Cow position:chr10:31803307-31803555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):23, 71

               
               
               Conread position:64-379
               
               
               Cow position:chr10:5543078-5543386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 44

               
               
               Conread position:64-380
               
               
               Cow position:chr10:45658310-45658002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):203, 31

               
               
               Conread position:64-384
               
               
               Cow position:chr10:28152225-28152527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):200, 30

               
               
               Conread position:64-384
               
               
               Cow position:chr10:46195951-46195635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 57

               
               
               Conread position:65-254
               
               
               Cow position:chr10:37507982-37508165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:65-272
               
               
               Cow position:chr10:41116070-41115868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):199, 58

               
               
               Conread position:65-328
               
               
               Cow position:chr10:59462298-59462042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):164, 26

               
               
               Conread position:65-354
               
               
               Cow position:chr10:35867847-35868136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):199, 156

               
               
               Conread position:65-384
               
               
               Cow position:chr10:18042352-18042037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):69, 26

               
               
               Conread position:65-384
               
               
               Cow position:chr10:52695557-52695876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 81

               
               
               Conread position:67-384
               
               
               Cow position:chr10:66194135-66194452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):71, 13

               
               
               Conread position:68-252
               
               
               Cow position:chr10:58651026-58651202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:68-304
               
               
               Cow position:chr10:49909926-49910179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:68-378
               
               
               Cow position:chr10:42746077-42745776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):196, 26

               
               
               Conread position:68-383
               
               
               Cow position:chr10:721457-721155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):151, 60

               
               
               Conread position:68-384
               
               
               Cow position:chr10:25699828-25699505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):70, 224

               
               
               Conread position:68-384
               
               
               Cow position:chr10:48462180-48462486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):196, 42

               
               
               Conread position:69-272
               
               
               Cow position:chr10:30929719-30929924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):164, 60

               
               
               Conread position:69-317
               
               
               Cow position:chr10:55319659-55319409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):190, 72

               
               
               Conread position:69-378
               
               
               Cow position:chr10:64876689-64876377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):93, 107

               
               
               Conread position:69-384
               
               
               Cow position:chr10:57142038-57142359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):59, 273

               
               
               Conread position:71-384
               
               
               Cow position:chr10:11624094-11623772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 15

               
               
               Conread position:72-232
               
               
               Cow position:chr10:4170523-4170688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 95

               
               
               Conread position:72-247
               
               
               Cow position:chr10:28194199-28194370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):110, 56

               
               
               Conread position:72-251
               
               
               Cow position:chr10:49382800-49382970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:72-273
               
               
               Cow position:chr10:21564912-21564711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 111

               
               
               Conread position:72-273
               
               
               Cow position:chr10:48619851-48620049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):194, 69

               
               
               Conread position:72-342
               
               
               Cow position:chr10:41198057-41197783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:72-344
               
               
               Cow position:chr10:30216554-30216815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):192, 73

               
               
               Conread position:72-384
               
               
               Cow position:chr10:53674990-53674677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:72-384
               
               
               Cow position:chr10:56828157-56828465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 74

               
               
               Conread position:73-279
               
               
               Cow position:chr10:7835433-7835630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):191, 13

               
               
               Conread position:73-318
               
               
               Cow position:chr10:51727264-51727499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):98, 68

               
               
               Conread position:73-355
               
               
               Cow position:chr10:26577717-26577430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 221

               
               
               Conread position:74-365
               
               
               Cow position:chr10:58718814-58718516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):62, 20

               
               
               Conread position:74-371
               
               
               Cow position:chr10:1423993-1423706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):185, 210

               
               
               Conread position:74-375
               
               
               Cow position:chr10:15309248-15309535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):139, 20

               
               
               Conread position:75-368
               
               
               Cow position:chr10:61982550-61982255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 103

               
               
               Conread position:76-241
               
               
               Cow position:chr10:64438330-64438161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 100

               
               
               Conread position:76-384
               
               
               Cow position:chr10:6505511-6505216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):21, 53

               
               
               Conread position:76-384
               
               
               Cow position:chr10:7366633-7366933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):117, 49

               
               
               Conread position:77-273
               
               
               Cow position:chr10:32503589-32503389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:79-326
               
               
               Cow position:chr10:61426308-61426542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):147, 63

               
               
               Conread position:79-327
               
               
               Cow position:chr10:47182410-47182656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):67, 110

               
               
               Conread position:79-331
               
               
               Cow position:chr10:46575662-46575413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):180, 36

               
               
               Conread position:79-342
               
               
               Cow position:chr10:53429037-53428768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:79-368
               
               
               Cow position:chr10:8449672-8449367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:79-384
               
               
               Cow position:chr10:1488984-1488692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):185, 63

               
               
               Conread position:79-384
               
               
               Cow position:chr10:10720516-10720820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 23

               
               
               Conread position:79-384
               
               
               Cow position:chr10:48512922-48513231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):52, 97

               
               
               Conread position:80-248
               
               
               Cow position:chr10:59159408-59159231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:80-273
               
               
               Cow position:chr10:54699550-54699742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):134, 64

               
               
               Conread position:82-364
               
               
               Cow position:chr10:55122962-55122667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:83-352
               
               
               Cow position:chr10:24096217-24096492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):64, 229

               
               
               Conread position:88-384
               
               
               Cow position:chr10:42123442-42123742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):61, 99

               
               
               Conread position:90-250
               
               
               Cow position:chr10:32127356-32127190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:90-366
               
               
               Cow position:chr10:21422017-21422289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:207
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):174, 55

               
               
               Conread position:90-384
               
               
               Cow position:chr10:35802216-35802516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):123, 62

               
               
               Conread position:90-384
               
               
               Cow position:chr10:52278869-52278583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 55

               
               
               Conread position:92-320
               
               
               Cow position:chr10:6665423-6665638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):203, 46

               
               
               Conread position:92-384
               
               
               Cow position:chr10:9675325-9675605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):172, 34

               
               
               Conread position:103-301
               
               
               Cow position:chr10:40744240-40744048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):161, 22

               
               
               Conread position:107-384
               
               
               Cow position:chr10:53973973-53973700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):20, 116

               
               
               Conread position:108-348
               
               
               Cow position:chr10:63628314-63628067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):156, 39

               
               
               Conread position:111-384
               
               
               Cow position:chr10:45770167-45769895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):129, 28

               
               
               Conread position:113-383
               
               
               Cow position:chr10:23886334-23886600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 77

               
               
               Conread position:128-340
               
               
               Cow position:chr10:41760213-41760426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):152, 99

               
               
               Conread position:128-348
               
               
               Cow position:chr10:49947775-49947989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):143, 18

               
               
               Conread position:128-355
               
               
               Cow position:chr10:34660136-34660360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):136, 37

               
               
               Conread position:128-371
               
               
               Cow position:chr10:52120844-52120605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):137, 27

               
               
               Conread position:128-378
               
               
               Cow position:chr10:47725056-47724810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):27, 162

               
               
               Conread position:128-384
               
               
               Cow position:chr10:28776457-28776203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):153, 18

               
               
               Conread position:128-384
               
               
               Cow position:chr10:43509106-43508843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:128-384
               
               
               Cow position:chr10:52113565-52113817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):36, 47

               
               
               Conread position:128-385
               
               
               Cow position:chr10:24732413-24732164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:128-386
               
               
               Cow position:chr10:26209141-26209408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):155, 28

               
               
               Conread position:129-257
               
               
               Cow position:chr10:13158221-13158092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:129-265
               
               
               Cow position:chr10:2695070-2694936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:129-332
               
               
               Cow position:chr10:23583465-23583665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:129-378
               
               
               Cow position:chr10:20132421-20132667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):135, 171

               
               
               Conread position:129-384
               
               
               Cow position:chr10:24022178-24022425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:129-384
               
               
               Cow position:chr10:29252271-29252018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):135, 83

               
               
               Conread position:129-384
               
               
               Cow position:chr10:29919733-29919981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:129-384
               
               
               Cow position:chr10:36002307-36002051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 60

               
               
               Conread position:129-384
               
               
               Cow position:chr10:50609659-50609394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:129-384
               
               
               Cow position:chr10:59663865-59664123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:131-262
               
               
               Cow position:chr10:46941372-46941504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:131-274
               
               
               Cow position:chr10:36947088-36947232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):55, 20

               
               
               Conread position:131-304
               
               
               Cow position:chr10:24902879-24903052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):133, 154

               
               
               Conread position:131-326
               
               
               Cow position:chr10:56180670-56180476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):8, 167

               
               
               Conread position:131-354
               
               
               Cow position:chr10:49253469-49253252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):23, 109

               
               
               Conread position:131-379
               
               
               Cow position:chr10:69997695-69997945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:131-382
               
               
               Cow position:chr10:77475-77244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-383
               
               
               Cow position:chr10:67288394-67288149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:131-384
               
               
               Cow position:chr10:9083408-9083150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):16, 58

               
               
               Conread position:131-384
               
               
               Cow position:chr10:11213218-11212968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):24, 123

               
               
               Conread position:131-384
               
               
               Cow position:chr10:22396358-22396104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):135, 86

               
               
               Conread position:131-384
               
               
               Cow position:chr10:24375649-24375405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):240, 80

               
               
               Conread position:131-384
               
               
               Cow position:chr10:34174873-34175141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):133, 10

               
               
               Conread position:131-384
               
               
               Cow position:chr10:41802787-41803041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):59, 168

               
               
               Conread position:131-384
               
               
               Cow position:chr10:53247900-53248159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):136, 16

               
               
               Conread position:131-384
               
               
               Cow position:chr10:58259418-58259663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:131-385
               
               
               Cow position:chr10:61839688-61839447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 50

               
               
               Conread position:131-387
               
               
               Cow position:chr10:49455987-49456237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 44

               
               
               Conread position:132-319
               
               
               Cow position:chr10:42451152-42451335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):60, 79

               
               
               Conread position:132-368
               
               
               Cow position:chr10:9578856-9579097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):114, 20

               
               
               Conread position:132-380
               
               
               Cow position:chr10:30360623-30360376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:132-383
               
               
               Cow position:chr10:44783453-44783198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):17, 58

               
               
               Conread position:132-384
               
               
               Cow position:chr10:2538194-2537947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):132, 29

               
               
               Conread position:132-384
               
               
               Cow position:chr10:6530289-6530049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):173, 15

               
               
               Conread position:132-384
               
               
               Cow position:chr10:6543827-6543575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 15

               
               
               Conread position:132-384
               
               
               Cow position:chr10:15318990-15318736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):64, 162

               
               
               Conread position:132-384
               
               
               Cow position:chr10:31791154-31791406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):12, 44

               
               
               Conread position:132-387
               
               
               Cow position:chr10:10135090-10134834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:133-328
               
               
               Cow position:chr10:53405576-53405384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):130, 152

               
               
               Conread position:133-368
               
               
               Cow position:chr10:19549385-19549618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:133-382
               
               
               Cow position:chr10:54477199-54476961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):131, 26

               
               
               Conread position:133-383
               
               
               Cow position:chr10:15115716-15115469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 19

               
               
               Conread position:133-384
               
               
               Cow position:chr10:35778800-35779049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 26

               
               
               Conread position:134-384
               
               
               Cow position:chr10:12315246-12315009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):130, 13

               
               
               Conread position:134-384
               
               
               Cow position:chr10:15871772-15872019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:134-384
               
               
               Cow position:chr10:22472427-22472171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 207

               
               
               Conread position:134-384
               
               
               Cow position:chr10:33116849-33117098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):132, 79

               
               
               Conread position:134-385
               
               
               Cow position:chr10:24132723-24132967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):131, 12

               
               
               Conread position:135-397
               
               
               Cow position:chr10:4164369-4164109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):131, 17

               
               
               Conread position:136-326
               
               
               Cow position:chr10:52827499-52827679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):125, 15

               
               
               Conread position:136-384
               
               
               Cow position:chr10:31116774-31116538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):128, 42

               
               
               Conread position:136-384
               
               
               Cow position:chr10:50134704-50134954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):125, 25

               
               
               Conread position:137-330
               
               
               Cow position:chr10:973231-973046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:137-332
               
               
               Cow position:chr10:54819363-54819170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:137-348
               
               
               Cow position:chr10:6199120-6198907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:139-332
               
               
               Cow position:chr10:15425147-15424958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):125, 93

               
               
               Conread position:139-384
               
               
               Cow position:chr10:53336306-53336554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:139-384
               
               
               Cow position:chr10:59151768-59152013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):125, 12

               
               
               Conread position:141-351
               
               
               Cow position:chr10:29379863-29380075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):125, 82

               
               
               Conread position:141-384
               
               
               Cow position:chr10:33732777-33733015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:142-384
               
               
               Cow position:chr10:20897382-20897157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:146-331
               
               
               Cow position:chr10:37768393-37768207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):118, 19

               
               
               Conread position:146-379
               
               
               Cow position:chr10:2849439-2849214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):118, 65

               
               
               Conread position:146-379
               
               
               Cow position:chr10:17176123-17175893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 87

               
               
               Conread position:146-381
               
               
               Cow position:chr10:22633535-22633769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):118, 142

               
               
               Conread position:146-384
               
               
               Cow position:chr10:37668066-37668305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 34

               
               
               Conread position:146-384
               
               
               Cow position:chr10:48087977-48087740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:146-384
               
               
               Cow position:chr10:51942879-51942644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):79, 104

               
               
               Conread position:146-384
               
               
               Cow position:chr10:55621764-55621993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):124, 32

               
               
               Conread position:147-362
               
               
               Cow position:chr10:12100454-12100674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:147-372
               
               
               Cow position:chr10:51861989-51862211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):117, 141

               
               
               Conread position:147-378
               
               
               Cow position:chr10:52046960-52046722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 143

               
               
               Conread position:147-382
               
               
               Cow position:chr10:21447820-21448045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):103, 132

               
               
               Conread position:147-383
               
               
               Cow position:chr10:68829195-68829427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:147-384
               
               
               Cow position:chr10:28104989-28105230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:147-384
               
               
               Cow position:chr10:29279535-29279294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:147-384
               
               
               Cow position:chr10:30613916-30613691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:147-384
               
               
               Cow position:chr10:31779179-31779419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:147-384
               
               
               Cow position:chr10:47651388-47651161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):117, 141

               
               
               Conread position:147-384
               
               
               Cow position:chr10:53357984-53357751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):118, 8

               
               
               Conread position:147-385
               
               
               Cow position:chr10:27828410-27828181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):117, 9

               
               
               Conread position:151-256
               
               
               Cow position:chr10:25193064-25192959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:85
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:151-314
               
               
               Cow position:chr10:49060632-49060792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):113, 17

               
               
               Conread position:151-379
               
               
               Cow position:chr10:38725740-38725515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):129, 68

               
               
               Conread position:151-379
               
               
               Cow position:chr10:41254490-41254712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):113, 7

               
               
               Conread position:151-384
               
               
               Cow position:chr10:51696826-51696595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):87, 68

               
               
               Conread position:152-355
               
               
               Cow position:chr10:10026434-10026239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):111, 125

               
               
               Conread position:152-378
               
               
               Cow position:chr10:46492909-46493139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):6, 134

               
               
               Conread position:152-384
               
               
               Cow position:chr10:13390963-13391197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):112, 136

               
               
               Conread position:152-384
               
               
               Cow position:chr10:22321607-22321375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):136, 170

               
               
               Conread position:153-324
               
               
               Cow position:chr10:17293348-17293522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:153-384
               
               
               Cow position:chr10:22527818-22528051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):109, 163

               
               
               Conread position:153-384
               
               
               Cow position:chr10:23936560-23936337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):111, 80

               
               
               Conread position:153-384
               
               
               Cow position:chr10:28038850-28039084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):17, 22

               
               
               Conread position:154-352
               
               
               Cow position:chr10:48573597-48573795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):110, 135

               
               
               Conread position:155-368
               
               
               Cow position:chr10:48741078-48741290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):140, 159

               
               
               Conread position:155-384
               
               
               Cow position:chr10:15462574-15462342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:155-384
               
               
               Cow position:chr10:32583993-32583764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):109, 117

               
               
               Conread position:155-384
               
               
               Cow position:chr10:59839206-59839432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):148, 56

               
               
               Conread position:155-384
               
               
               Cow position:chr10:65423823-65424046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):109, 19

               
               
               Conread position:161-367
               
               
               Cow position:chr10:533607-533399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):105, 128

               
               
               Conread position:161-384
               
               
               Cow position:chr10:8923355-8923130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:161-384
               
               
               Cow position:chr10:38014441-38014218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):106, 13

               
               
               Conread position:161-384
               
               
               Cow position:chr10:41941489-41941724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:161-384
               
               
               Cow position:chr10:47412031-47412252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):104, 61

               
               
               Conread position:168-384
               
               
               Cow position:chr10:5264879-5264672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):188, 51

               
               
               Conread position:168-385
               
               
               Cow position:chr10:24781257-24781039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):96, 126

               
               
               Conread position:171-383
               
               
               Cow position:chr10:805255-805050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):96, 19

               
               
               Conread position:171-384
               
               
               Cow position:chr10:42892905-42893112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):93, 61

               
               
               Conread position:172-384
               
               
               Cow position:chr10:32029769-32029980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:174-321
               
               
               Cow position:chr10:6252434-6252583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:174-369
               
               
               Cow position:chr10:29588777-29588967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 124

               
               
               Conread position:174-384
               
               
               Cow position:chr10:13617591-13617795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):84, 42

               
               
               Conread position:174-385
               
               
               Cow position:chr10:49038647-49038431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:179-384
               
               
               Cow position:chr10:21462300-21462090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):85, 39

               
               
               Conread position:179-384
               
               
               Cow position:chr10:55849405-55849209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):109, 43

               
               
               Conread position:180-384
               
               
               Cow position:chr10:54469337-54469541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):84, 133

               
               
               Conread position:180-385
               
               
               Cow position:chr10:24548306-24548108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):85, 41

               
               
               Conread position:182-384
               
               
               Cow position:chr10:24744600-24744400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):83, 144

               
               
               Conread position:183-384
               
               
               Cow position:chr10:35857008-35857202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):81, 100

               
               
               Conread position:185-383
               
               
               Cow position:chr10:10964039-10963842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):97, 138

               
               
               Conread position:185-411
               
               
               Cow position:chr10:13163397-13163618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):81, 108

               
               
               Conread position:186-384
               
               
               Cow position:chr10:35767038-35767230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):6, 52

               
               
               Conread position:187-374
               
               
               Cow position:chr10:12919307-12919493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 45

               
               
               Conread position:187-384
               
               
               Cow position:chr10:59164053-59164242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):77, 50

               
               
               Conread position:189-378
               
               
               Cow position:chr10:66211243-66211433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):75, 124

               
               
               Conread position:190-382
               
               
               Cow position:chr10:39303800-39303996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:191-384
               
               
               Cow position:chr10:1428085-1427896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):17, 96

               
               
               Conread position:194-378
               
               
               Cow position:chr10:45679060-45678878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):65, 82

               
               
               Conread position:196-384
               
               
               Cow position:chr10:53084210-53084021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):64, 26

               
               
               Conread position:199-384
               
               
               Cow position:chr10:22520124-22520311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:202-407
               
               
               Cow position:chr10:25260290-25260084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):64, 89

               
               
               Conread position:223-380
               
               
               Cow position:chr10:17584023-17584183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 62

               
               
               Conread position:223-381
               
               
               Cow position:chr10:59159082-59159242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):41, 66

               
               
               Conread position:237-373
               
               
               Cow position:chr10:29090686-29090828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 68

               
               
               Conread position:250-384
               
               
               Cow position:chr10:24971624-24971760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):21, 40

               
               
               Conread position:1-213
               
               
               Cow position:chr11:9691250-9691034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:1-365
               
               
               Cow position:chr11:3740198-3739831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):143, 62

               
               
               Conread position:2-241
               
               
               Cow position:chr11:41278430-41278187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):24, 189

               
               
               Conread position:2-251
               
               
               Cow position:chr11:22884648-22884405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):21, 67

               
               
               Conread position:2-378
               
               
               Cow position:chr11:4732586-4732207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):50, 156

               
               
               Conread position:2-383
               
               
               Cow position:chr11:52380636-52381014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 24

               
               
               Conread position:2-384
               
               
               Cow position:chr11:63433822-63434197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):47, 141

               
               
               Conread position:2-388
               
               
               Cow position:chr11:13863860-13864243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):70, 24

               
               
               Conread position:3-282
               
               
               Cow position:chr11:81849128-81848847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):151, 92

               
               
               Conread position:3-373
               
               
               Cow position:chr11:85191381-85191750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):227, 22

               
               
               Conread position:3-378
               
               
               Cow position:chr11:40794110-40794486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:4-220
               
               
               Cow position:chr11:33369391-33369173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):142, 173

               
               
               Conread position:4-252
               
               
               Cow position:chr11:41238953-41239199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:4-384
               
               
               Cow position:chr11:23407697-23407320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:4-384
               
               
               Cow position:chr11:84385402-84385779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:250
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):143, 61

               
               
               Conread position:5-229
               
               
               Cow position:chr11:44614928-44615154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):24, 33

               
               
               Conread position:5-368
               
               
               Cow position:chr11:70304311-70303958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):155, 45

               
               
               Conread position:5-383
               
               
               Cow position:chr11:63998848-63999230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 254

               
               
               Conread position:5-384
               
               
               Cow position:chr11:5433498-5433124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):22, 45

               
               
               Conread position:6-235
               
               
               Cow position:chr11:19147903-19148129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 136

               
               
               Conread position:6-315
               
               
               Cow position:chr11:61675693-61675396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):23, 16

               
               
               Conread position:7-220
               
               
               Cow position:chr11:7616972-7617184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:7-234
               
               
               Cow position:chr11:80296624-80296844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:7-247
               
               
               Cow position:chr11:13684485-13684716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):233, 115

               
               
               Conread position:7-249
               
               
               Cow position:chr11:68326626-68326870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):140, 180

               
               
               Conread position:9-384
               
               
               Cow position:chr11:77745022-77745399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 11

               
               
               Conread position:12-332
               
               
               Cow position:chr11:22676343-22676026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):135, 171

               
               
               Conread position:14-252
               
               
               Cow position:chr11:6094176-6094412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:17-252
               
               
               Cow position:chr11:41979983-41980214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):139, 13

               
               
               Conread position:19-378
               
               
               Cow position:chr11:66572270-66572636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:240
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):117, 44

               
               
               Conread position:20-254
               
               
               Cow position:chr11:64781308-64781075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:20-378
               
               
               Cow position:chr11:80756571-80756917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):245, 7

               
               
               Conread position:20-384
               
               
               Cow position:chr11:65762362-65762741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 54

               
               
               Conread position:21-371
               
               
               Cow position:chr11:83323800-83323445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:261
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):38, 125

               
               
               Conread position:23-200
               
               
               Cow position:chr11:6784425-6784251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:23-378
               
               
               Cow position:chr11:7458061-7458419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):165, 41

               
               
               Conread position:24-214
               
               
               Cow position:chr11:51683437-51683244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):27, 164

               
               
               Conread position:24-326
               
               
               Cow position:chr11:8457682-8457986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):166, 40

               
               
               Conread position:24-377
               
               
               Cow position:chr11:18425021-18425372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):146, 41

               
               
               Conread position:25-339
               
               
               Cow position:chr11:17676159-17676467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 31

               
               
               Conread position:25-378
               
               
               Cow position:chr11:42835733-42836093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 74

               
               
               Conread position:25-378
               
               
               Cow position:chr11:59862425-59862080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):111, 18

               
               
               Conread position:26-245
               
               
               Cow position:chr11:6319913-6320135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):23, 162

               
               
               Conread position:26-378
               
               
               Cow position:chr11:15504325-15503971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):118, 38

               
               
               Conread position:26-378
               
               
               Cow position:chr11:26143882-26144231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):118, 60

               
               
               Conread position:26-384
               
               
               Cow position:chr11:71492645-71492997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):39, 61

               
               
               Conread position:27-220
               
               
               Cow position:chr11:42236063-42236259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):27, 47

               
               
               Conread position:27-302
               
               
               Cow position:chr11:8259288-8259017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):119, 21

               
               
               Conread position:27-328
               
               
               Cow position:chr11:21549694-21549398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):64, 21

               
               
               Conread position:27-368
               
               
               Cow position:chr11:14470576-14470245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:27-368
               
               
               Cow position:chr11:25791476-25791812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):39, 10

               
               
               Conread position:27-378
               
               
               Cow position:chr11:8496244-8495907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):150, 21

               
               
               Conread position:27-382
               
               
               Cow position:chr11:40395652-40395298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):43, 30

               
               
               Conread position:28-244
               
               
               Cow position:chr11:47314207-47314433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):7, 110

               
               
               Conread position:28-255
               
               
               Cow position:chr11:86895589-86895364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 102

               
               
               Conread position:28-272
               
               
               Cow position:chr11:69417617-69417373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):106, 36

               
               
               Conread position:28-328
               
               
               Cow position:chr11:47725107-47724817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):30, 73

               
               
               Conread position:28-382
               
               
               Cow position:chr11:55494886-55494540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:255
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):6, 77

               
               
               Conread position:28-384
               
               
               Cow position:chr11:36182904-36182545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 15

               
               
               Conread position:29-220
               
               
               Cow position:chr11:8421909-8422095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 100

               
               
               Conread position:29-247
               
               
               Cow position:chr11:57767399-57767186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:29-252
               
               
               Cow position:chr11:42191968-42192197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):97, 21

               
               
               Conread position:29-330
               
               
               Cow position:chr11:5075016-5075315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):19, 36

               
               
               Conread position:29-332
               
               
               Cow position:chr11:30370319-30370018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):26, 114

               
               
               Conread position:29-364
               
               
               Cow position:chr11:63919849-63920170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 87

               
               
               Conread position:29-368
               
               
               Cow position:chr11:83032895-83032558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 112

               
               
               Conread position:29-369
               
               
               Cow position:chr11:63034958-63035302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):110, 36

               
               
               Conread position:29-377
               
               
               Cow position:chr11:21893935-21894286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):7, 36

               
               
               Conread position:29-378
               
               
               Cow position:chr11:29916766-29916400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):32, 134

               
               
               Conread position:29-378
               
               
               Cow position:chr11:48672924-48672579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):125, 20

               
               
               Conread position:30-245
               
               
               Cow position:chr11:47950829-47950614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):100, 19

               
               
               Conread position:30-368
               
               
               Cow position:chr11:3720465-3720132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):116, 13

               
               
               Conread position:30-384
               
               
               Cow position:chr11:27747132-27746783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 109

               
               
               Conread position:30-384
               
               
               Cow position:chr11:34646806-34646450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 33

               
               
               Conread position:31-220
               
               
               Cow position:chr11:18777379-18777577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:31-249
               
               
               Cow position:chr11:18119714-18119495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):115, 64

               
               
               Conread position:31-252
               
               
               Cow position:chr11:46884586-46884364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):113, 42

               
               
               Conread position:31-274
               
               
               Cow position:chr11:15369601-15369355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):106, 132

               
               
               Conread position:31-304
               
               
               Cow position:chr11:80893992-80893720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:31-368
               
               
               Cow position:chr11:30708716-30708379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):116, 26

               
               
               Conread position:31-378
               
               
               Cow position:chr11:18508818-18509153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):16, 46

               
               
               Conread position:31-378
               
               
               Cow position:chr11:39462831-39462494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):233, 109

               
               
               Conread position:31-384
               
               
               Cow position:chr11:4662852-4663187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):233, 33

               
               
               Conread position:31-384
               
               
               Cow position:chr11:32254004-32254360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):30, 22

               
               
               Conread position:32-241
               
               
               Cow position:chr11:38226453-38226244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:32-249
               
               
               Cow position:chr11:12555096-12555312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):150, 18

               
               
               Conread position:32-252
               
               
               Cow position:chr11:1485024-1485236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:32-252
               
               
               Cow position:chr11:21830001-21830219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):139, 32

               
               
               Conread position:32-254
               
               
               Cow position:chr11:45350303-45350523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):112, 18

               
               
               Conread position:32-346
               
               
               Cow position:chr11:16315083-16314769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):108, 21

               
               
               Conread position:32-355
               
               
               Cow position:chr11:6423186-6423515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):29, 155

               
               
               Conread position:32-373
               
               
               Cow position:chr11:26535994-26535646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):146, 11

               
               
               Conread position:32-378
               
               
               Cow position:chr11:59024146-59024489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:32-384
               
               
               Cow position:chr11:1625010-1625359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 146

               
               
               Conread position:32-384
               
               
               Cow position:chr11:2907321-2907660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 61

               
               
               Conread position:32-384
               
               
               Cow position:chr11:8988024-8988369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):62, 110

               
               
               Conread position:33-220
               
               
               Cow position:chr11:11483528-11483334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):103, 24

               
               
               Conread position:33-303
               
               
               Cow position:chr11:1932280-1932553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:33-343
               
               
               Cow position:chr11:42919008-42919331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):114, 20

               
               
               Conread position:33-352
               
               
               Cow position:chr11:6643028-6642702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):21, 147

               
               
               Conread position:33-384
               
               
               Cow position:chr11:64077297-64077646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):123, 21

               
               
               Conread position:33-384
               
               
               Cow position:chr11:70951081-70950741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):21, 116

               
               
               Conread position:33-385
               
               
               Cow position:chr11:48429328-48428963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):51, 40

               
               
               Conread position:34-230
               
               
               Cow position:chr11:26057441-26057638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):95, 19

               
               
               Conread position:34-253
               
               
               Cow position:chr11:7427729-7427949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):113, 19

               
               
               Conread position:34-257
               
               
               Cow position:chr11:63478570-63478363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:34-301
               
               
               Cow position:chr11:32710720-32710456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):112, 16

               
               
               Conread position:34-342
               
               
               Cow position:chr11:58594180-58594487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):105, 19

               
               
               Conread position:34-384
               
               
               Cow position:chr11:37411313-37411670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 31

               
               
               Conread position:34-384
               
               
               Cow position:chr11:40466914-40467262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):120, 151

               
               
               Conread position:35-270
               
               
               Cow position:chr11:43914500-43914263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):119, 29

               
               
               Conread position:35-325
               
               
               Cow position:chr11:62482849-62482554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):111, 29

               
               
               Conread position:35-347
               
               
               Cow position:chr11:40792485-40792812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):5, 23

               
               
               Conread position:35-366
               
               
               Cow position:chr11:7385642-7385306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):229, 93

               
               
               Conread position:35-378
               
               
               Cow position:chr11:14649103-14649447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):153, 244

               
               
               Conread position:35-384
               
               
               Cow position:chr11:36059003-36058663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:239
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):119, 15

               
               
               Conread position:36-265
               
               
               Cow position:chr11:47784990-47784752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:36-373
               
               
               Cow position:chr11:30764699-30764355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):152, 224

               
               
               Conread position:36-384
               
               
               Cow position:chr11:6399858-6400212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):132, 17

               
               
               Conread position:36-384
               
               
               Cow position:chr11:46329704-46329359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):121, 28

               
               
               Conread position:37-220
               
               
               Cow position:chr11:62606624-62606439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):110, 150

               
               
               Conread position:37-238
               
               
               Cow position:chr11:19657010-19657209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):129, 27

               
               
               Conread position:37-249
               
               
               Cow position:chr11:77017437-77017235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 91

               
               
               Conread position:37-252
               
               
               Cow position:chr11:34644859-34644646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):110, 32

               
               
               Conread position:37-282
               
               
               Cow position:chr11:41437981-41438227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):107, 15

               
               
               Conread position:37-290
               
               
               Cow position:chr11:25698080-25698334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:37-315
               
               
               Cow position:chr11:20194219-20194502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):145, 20

               
               
               Conread position:37-334
               
               
               Cow position:chr11:953563-953264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:37-343
               
               
               Cow position:chr11:22977673-22977971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):25, 58

               
               
               Conread position:37-366
               
               
               Cow position:chr11:43360578-43360906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):16, 113

               
               
               Conread position:37-384
               
               
               Cow position:chr11:45435278-45434945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 17

               
               
               Conread position:37-384
               
               
               Cow position:chr11:65607478-65607832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):16, 118

               
               
               Conread position:37-410
               
               
               Cow position:chr11:66041476-66041108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):209, 16

               
               
               Conread position:38-345
               
               
               Cow position:chr11:31024597-31024910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):106, 26

               
               
               Conread position:38-348
               
               
               Cow position:chr11:29659761-29659457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):118, 33

               
               
               Conread position:38-377
               
               
               Cow position:chr11:1380882-1380548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):105, 295

               
               
               Conread position:38-378
               
               
               Cow position:chr11:3726493-3726153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):50, 15

               
               
               Conread position:38-384
               
               
               Cow position:chr11:63435733-63435376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 157

               
               
               Conread position:38-384
               
               
               Cow position:chr11:64335035-64334716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):172, 54

               
               
               Conread position:39-213
               
               
               Cow position:chr11:17369731-17369560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):22, 100

               
               
               Conread position:39-269
               
               
               Cow position:chr11:78820353-78820125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:39-343
               
               
               Cow position:chr11:5417085-5416783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):115, 18

               
               
               Conread position:39-384
               
               
               Cow position:chr11:40818430-40818781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 18

               
               
               Conread position:39-384
               
               
               Cow position:chr11:84228517-84228855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 104

               
               
               Conread position:39-385
               
               
               Cow position:chr11:75874569-75874895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):225, 18

               
               
               Conread position:39-385
               
               
               Cow position:chr11:80556423-80556078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 109

               
               
               Conread position:40-231
               
               
               Cow position:chr11:4411670-4411857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:40-249
               
               
               Cow position:chr11:74427882-74427671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):62, 68

               
               
               Conread position:40-348
               
               
               Cow position:chr11:30808394-30808707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):104, 52

               
               
               Conread position:40-378
               
               
               Cow position:chr11:30638745-30639077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):9, 103

               
               
               Conread position:40-384
               
               
               Cow position:chr11:33349500-33349840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):48, 24

               
               
               Conread position:40-384
               
               
               Cow position:chr11:64009928-64009577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):107, 33

               
               
               Conread position:41-209
               
               
               Cow position:chr11:12768596-12768432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:41-222
               
               
               Cow position:chr11:81928314-81928487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):56, 10

               
               
               Conread position:41-274
               
               
               Cow position:chr11:18924948-18924713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:41-282
               
               
               Cow position:chr11:56311394-56311636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 133

               
               
               Conread position:41-291
               
               
               Cow position:chr11:27461909-27462149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):223, 85

               
               
               Conread position:41-368
               
               
               Cow position:chr11:81167827-81168157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):19, 124

               
               
               Conread position:41-382
               
               
               Cow position:chr11:6245524-6245182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):19, 152

               
               
               Conread position:42-358
               
               
               Cow position:chr11:55762056-55761755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):220, 15

               
               
               Conread position:42-366
               
               
               Cow position:chr11:75285552-75285891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):16, 150

               
               
               Conread position:42-368
               
               
               Cow position:chr11:261054-261388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):19, 68

               
               
               Conread position:42-383
               
               
               Cow position:chr11:50472519-50472176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):104, 145

               
               
               Conread position:42-384
               
               
               Cow position:chr11:35724171-35723838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):102, 145

               
               
               Conread position:43-228
               
               
               Cow position:chr11:54872560-54872745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):25, 103

               
               
               Conread position:43-328
               
               
               Cow position:chr11:4636975-4637259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):112, 103

               
               
               Conread position:43-348
               
               
               Cow position:chr11:8584517-8584215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):16, 86

               
               
               Conread position:43-364
               
               
               Cow position:chr11:47310784-47311106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 146

               
               
               Conread position:43-382
               
               
               Cow position:chr11:287130-287472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):43, 137

               
               
               Conread position:43-382
               
               
               Cow position:chr11:38236445-38236104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):106, 60

               
               
               Conread position:43-384
               
               
               Cow position:chr11:10095544-10095205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):9, 255

               
               
               Conread position:43-384
               
               
               Cow position:chr11:37804353-37804696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):101, 21

               
               
               Conread position:44-216
               
               
               Cow position:chr11:25614602-25614787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 154

               
               
               Conread position:44-383
               
               
               Cow position:chr11:32054984-32055325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 143

               
               
               Conread position:44-384
               
               
               Cow position:chr11:17321866-17321519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):31, 185

               
               
               Conread position:45-240
               
               
               Cow position:chr11:74152551-74152752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:45-282
               
               
               Cow position:chr11:71854086-71854319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):215, 137

               
               
               Conread position:45-348
               
               
               Cow position:chr11:30494187-30493893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:45-375
               
               
               Cow position:chr11:35212973-35213294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):219, 53

               
               
               Conread position:45-378
               
               
               Cow position:chr11:62789326-62788993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 83

               
               
               Conread position:45-384
               
               
               Cow position:chr11:4207508-4207171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):99, 12

               
               
               Conread position:45-384
               
               
               Cow position:chr11:67931294-67931635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):101, 19

               
               
               Conread position:46-230
               
               
               Cow position:chr11:74839802-74839623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:46-251
               
               
               Cow position:chr11:45553669-45553457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):103, 132

               
               
               Conread position:46-335
               
               
               Cow position:chr11:1067242-1067535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):101, 27

               
               
               Conread position:46-383
               
               
               Cow position:chr11:35580458-35580117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:46-384
               
               
               Cow position:chr11:50152616-50152957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:47-226
               
               
               Cow position:chr11:4390099-4389920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):97, 131

               
               
               Conread position:47-270
               
               
               Cow position:chr11:2900517-2900749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:47-282
               
               
               Cow position:chr11:54428814-54428580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):102, 6

               
               
               Conread position:47-302
               
               
               Cow position:chr11:30964540-30964287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):16, 174

               
               
               Conread position:47-332
               
               
               Cow position:chr11:19946618-19946346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):19, 39

               
               
               Conread position:47-371
               
               
               Cow position:chr11:36940398-36940726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):99, 129

               
               
               Conread position:47-383
               
               
               Cow position:chr11:19487284-19487618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:47-384
               
               
               Cow position:chr11:2575713-2576045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):219, 18

               
               
               Conread position:47-384
               
               
               Cow position:chr11:56729130-56728808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):212, 17

               
               
               Conread position:48-297
               
               
               Cow position:chr11:80639357-80639605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):192, 57

               
               
               Conread position:48-313
               
               
               Cow position:chr11:55636030-55636301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):106, 128

               
               
               Conread position:48-332
               
               
               Cow position:chr11:36914371-36914657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:48-340
               
               
               Cow position:chr11:35665365-35665660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:48-343
               
               
               Cow position:chr11:45619543-45619247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):211, 5

               
               
               Conread position:48-369
               
               
               Cow position:chr11:66896605-66896923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):211, 25

               
               
               Conread position:48-378
               
               
               Cow position:chr11:4323560-4323222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 16

               
               
               Conread position:48-378
               
               
               Cow position:chr11:20684376-20684709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):132, 16

               
               
               Conread position:48-378
               
               
               Cow position:chr11:38334718-38334391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):12, 70

               
               
               Conread position:48-384
               
               
               Cow position:chr11:3175862-3175549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):308, 5

               
               
               Conread position:48-384
               
               
               Cow position:chr11:33293585-33293929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:48-384
               
               
               Cow position:chr11:36286899-36286554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):88, 24

               
               
               Conread position:48-384
               
               
               Cow position:chr11:81143350-81143692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:49-198
               
               
               Cow position:chr11:32586929-32587079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):8, 106

               
               
               Conread position:49-224
               
               
               Cow position:chr11:82732956-82733131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:49-255
               
               
               Cow position:chr11:49396333-49396538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):116, 7

               
               
               Conread position:49-258
               
               
               Cow position:chr11:36521075-36520859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 129

               
               
               Conread position:49-364
               
               
               Cow position:chr11:36194488-36194175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):69, 82

               
               
               Conread position:49-383
               
               
               Cow position:chr11:258979-259313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 101

               
               
               Conread position:49-383
               
               
               Cow position:chr11:15772520-15772855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):97, 8

               
               
               Conread position:49-384
               
               
               Cow position:chr11:1485666-1486009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):120, 181

               
               
               Conread position:49-384
               
               
               Cow position:chr11:6202651-6202305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 259

               
               
               Conread position:49-384
               
               
               Cow position:chr11:15339249-15338931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):216, 43

               
               
               Conread position:49-384
               
               
               Cow position:chr11:35153626-35153966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 53

               
               
               Conread position:49-384
               
               
               Cow position:chr11:44223076-44222749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 38

               
               
               Conread position:49-384
               
               
               Cow position:chr11:47638830-47639171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):107, 130

               
               
               Conread position:49-384
               
               
               Cow position:chr11:62620570-62620242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 105

               
               
               Conread position:49-386
               
               
               Cow position:chr11:2084339-2083999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):88, 330

               
               
               Conread position:50-199
               
               
               Cow position:chr11:63977248-63977101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:50-201
               
               
               Cow position:chr11:62655884-62655735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):136, 95

               
               
               Conread position:50-213
               
               
               Cow position:chr11:33271622-33271460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):114, 101

               
               
               Conread position:50-216
               
               
               Cow position:chr11:36361448-36361616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 128

               
               
               Conread position:50-220
               
               
               Cow position:chr11:30857228-30857060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):127, 74

               
               
               Conread position:50-228
               
               
               Cow position:chr11:15591287-15591460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:50-229
               
               
               Cow position:chr11:25721810-25721981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:50-250
               
               
               Cow position:chr11:49210624-49210829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):81, 117

               
               
               Conread position:50-255
               
               
               Cow position:chr11:32260724-32260522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):65, 132

               
               
               Conread position:50-256
               
               
               Cow position:chr11:1980073-1980281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:50-257
               
               
               Cow position:chr11:9699062-9699259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:50-257
               
               
               Cow position:chr11:41576677-41576882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):5, 68

               
               
               Conread position:50-259
               
               
               Cow position:chr11:77241895-77241688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):196, 95

               
               
               Conread position:50-274
               
               
               Cow position:chr11:66939397-66939625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 141

               
               
               Conread position:50-286
               
               
               Cow position:chr11:897857-897628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):214, 47

               
               
               Conread position:50-302
               
               
               Cow position:chr11:46922694-46922947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 102

               
               
               Conread position:50-332
               
               
               Cow position:chr11:35536767-35536498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):214, 14

               
               
               Conread position:50-355
               
               
               Cow position:chr11:47837512-47837203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):80, 42

               
               
               Conread position:50-368
               
               
               Cow position:chr11:31526072-31525744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):138, 15

               
               
               Conread position:50-370
               
               
               Cow position:chr11:13940380-13940064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):97, 66

               
               
               Conread position:50-373
               
               
               Cow position:chr11:67614732-67615059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 96

               
               
               Conread position:50-377
               
               
               Cow position:chr11:19591804-19592125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):97, 14

               
               
               Conread position:50-378
               
               
               Cow position:chr11:7460430-7460750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 58

               
               
               Conread position:50-378
               
               
               Cow position:chr11:85723887-85723567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):201, 121

               
               
               Conread position:50-381
               
               
               Cow position:chr11:48660123-48659793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):214, 88

               
               
               Conread position:50-382
               
               
               Cow position:chr11:15017251-15016902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:50-383
               
               
               Cow position:chr11:31413649-31413313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):106, 14

               
               
               Conread position:50-383
               
               
               Cow position:chr11:64044410-64044101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:50-384
               
               
               Cow position:chr11:41364-41042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):11, 60

               
               
               Conread position:50-384
               
               
               Cow position:chr11:15632367-15632698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):143, 65

               
               
               Conread position:50-384
               
               
               Cow position:chr11:17227459-17227787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):214, 24

               
               
               Conread position:50-384
               
               
               Cow position:chr11:27404878-27405207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 141

               
               
               Conread position:50-384
               
               
               Cow position:chr11:30165703-30165368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr11:33286762-33287094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):112, 136

               
               
               Conread position:50-384
               
               
               Cow position:chr11:33348006-33348327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):324, 54

               
               
               Conread position:50-384
               
               
               Cow position:chr11:46747666-46748005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):96, 140

               
               
               Conread position:50-384
               
               
               Cow position:chr11:48650178-48649840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr11:53773876-53773535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):97, 124

               
               
               Conread position:50-384
               
               
               Cow position:chr11:62239934-62239605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 78

               
               
               Conread position:50-384
               
               
               Cow position:chr11:70483657-70484000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):10, 140

               
               
               Conread position:50-386
               
               
               Cow position:chr11:83398100-83397762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):95, 251

               
               
               Conread position:50-387
               
               
               Cow position:chr11:47351530-47351201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 139

               
               
               Conread position:50-397
               
               
               Cow position:chr11:70600635-70600973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:51-241
               
               
               Cow position:chr11:58186065-58185884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 93

               
               
               Conread position:51-383
               
               
               Cow position:chr11:20238869-20238531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:51-384
               
               
               Cow position:chr11:7874331-7874006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:51-384
               
               
               Cow position:chr11:46746829-46746487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):15, 65

               
               
               Conread position:51-384
               
               
               Cow position:chr11:62490614-62490292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 42

               
               
               Conread position:51-384
               
               
               Cow position:chr11:83043175-83043505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 77

               
               
               Conread position:52-205
               
               
               Cow position:chr11:2830847-2830694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-235
               
               
               Cow position:chr11:34778252-34778436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):95, 21

               
               
               Conread position:52-247
               
               
               Cow position:chr11:6006500-6006308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):112, 74

               
               
               Conread position:52-269
               
               
               Cow position:chr11:71022190-71021974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):50, 12

               
               
               Conread position:52-280
               
               
               Cow position:chr11:4225275-4225059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):212, 19

               
               
               Conread position:52-328
               
               
               Cow position:chr11:29699495-29699782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 205

               
               
               Conread position:52-362
               
               
               Cow position:chr11:375652-375335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 70

               
               
               Conread position:52-377
               
               
               Cow position:chr11:68841400-68841068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):97, 128

               
               
               Conread position:52-378
               
               
               Cow position:chr11:13500202-13499881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:52-378
               
               
               Cow position:chr11:42016448-42016768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):105, 28

               
               
               Conread position:52-382
               
               
               Cow position:chr11:2925118-2925427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):212, 12

               
               
               Conread position:52-384
               
               
               Cow position:chr11:11647287-11646928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):72, 12

               
               
               Conread position:52-384
               
               
               Cow position:chr11:13061062-13061371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 61

               
               
               Conread position:52-384
               
               
               Cow position:chr11:42291648-42291974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):9, 118

               
               
               Conread position:52-384
               
               
               Cow position:chr11:55053054-55052745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):212, 43

               
               
               Conread position:52-390
               
               
               Cow position:chr11:69978156-69977829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 34

               
               
               Conread position:53-212
               
               
               Cow position:chr11:65431707-65431549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:53-213
               
               
               Cow position:chr11:81340354-81340511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):98, 69

               
               
               Conread position:53-249
               
               
               Cow position:chr11:10563197-10563002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):7, 76

               
               
               Conread position:53-249
               
               
               Cow position:chr11:58048521-58048325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):111, 132

               
               
               Conread position:53-255
               
               
               Cow position:chr11:15366788-15366985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):114, 80

               
               
               Conread position:53-261
               
               
               Cow position:chr11:46784654-46784456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 80

               
               
               Conread position:53-271
               
               
               Cow position:chr11:17638328-17638564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 138

               
               
               Conread position:53-272
               
               
               Cow position:chr11:30172489-30172279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):210, 75

               
               
               Conread position:53-273
               
               
               Cow position:chr11:35769077-35768854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 101

               
               
               Conread position:53-281
               
               
               Cow position:chr11:38211831-38211606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):65, 30

               
               
               Conread position:53-321
               
               
               Cow position:chr11:62578992-62578723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):131, 11

               
               
               Conread position:53-355
               
               
               Cow position:chr11:37918858-37919156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 106

               
               
               Conread position:53-368
               
               
               Cow position:chr11:70756664-70756356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):252, 72

               
               
               Conread position:53-376
               
               
               Cow position:chr11:61526270-61525935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 148

               
               
               Conread position:53-378
               
               
               Cow position:chr11:17889537-17889858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):93, 134

               
               
               Conread position:53-378
               
               
               Cow position:chr11:61454313-61454662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):70, 60

               
               
               Conread position:53-381
               
               
               Cow position:chr11:52690335-52690661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):211, 49

               
               
               Conread position:53-384
               
               
               Cow position:chr11:9270548-9270869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):211, 42

               
               
               Conread position:53-384
               
               
               Cow position:chr11:9464026-9463690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):81, 11

               
               
               Conread position:53-384
               
               
               Cow position:chr11:19594009-19593680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):75, 107

               
               
               Conread position:53-384
               
               
               Cow position:chr11:45631590-45631903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):213, 68

               
               
               Conread position:53-384
               
               
               Cow position:chr11:49057573-49057261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):211, 69

               
               
               Conread position:53-384
               
               
               Cow position:chr11:62573838-62574146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):209, 74

               
               
               Conread position:53-384
               
               
               Cow position:chr11:66188131-66188462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):211, 41

               
               
               Conread position:53-384
               
               
               Cow position:chr11:80923136-80923465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 38

               
               
               Conread position:53-385
               
               
               Cow position:chr11:27913476-27913131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 294

               
               
               Conread position:53-386
               
               
               Cow position:chr11:49153130-49152808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):211, 78

               
               
               Conread position:53-387
               
               
               Cow position:chr11:81300431-81300754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):84, 102

               
               
               Conread position:54-209
               
               
               Cow position:chr11:70821235-70821078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 119

               
               
               Conread position:54-213
               
               
               Cow position:chr11:73638044-73637884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):73, 102

               
               
               Conread position:54-238
               
               
               Cow position:chr11:73940373-73940559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):66, 124

               
               
               Conread position:54-282
               
               
               Cow position:chr11:35669776-35669992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):7, 39

               
               
               Conread position:54-319
               
               
               Cow position:chr11:30867366-30867104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):210, 65

               
               
               Conread position:54-332
               
               
               Cow position:chr11:21508200-21507914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:54-347
               
               
               Cow position:chr11:31228142-31227864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):208, 29

               
               
               Conread position:54-368
               
               
               Cow position:chr11:27719150-27719448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:54-368
               
               
               Cow position:chr11:40608404-40608722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 75

               
               
               Conread position:54-368
               
               
               Cow position:chr11:49872698-49873013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 168

               
               
               Conread position:54-378
               
               
               Cow position:chr11:57724634-57724958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):100, 122

               
               
               Conread position:54-384
               
               
               Cow position:chr11:41985859-41986186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):211, 98

               
               
               Conread position:54-385
               
               
               Cow position:chr11:11125854-11125520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 37

               
               
               Conread position:54-386
               
               
               Cow position:chr11:30192368-30192029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 41

               
               
               Conread position:54-394
               
               
               Cow position:chr11:77705942-77705601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 139

               
               
               Conread position:55-283
               
               
               Cow position:chr11:18915199-18914983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):6, 74

               
               
               Conread position:55-321
               
               
               Cow position:chr11:17721613-17721883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:55-373
               
               
               Cow position:chr11:17278494-17278794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:55-384
               
               
               Cow position:chr11:68909663-68909992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):6, 124

               
               
               Conread position:55-385
               
               
               Cow position:chr11:65826566-65826884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):210, 37

               
               
               Conread position:56-224
               
               
               Cow position:chr11:63484127-63483961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:56-230
               
               
               Cow position:chr11:37042161-37041984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):66, 87

               
               
               Conread position:56-233
               
               
               Cow position:chr11:32108501-32108679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):93, 126

               
               
               Conread position:56-330
               
               
               Cow position:chr11:8437503-8437777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):73, 29

               
               
               Conread position:56-331
               
               
               Cow position:chr11:32398828-32398548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):71, 133

               
               
               Conread position:56-383
               
               
               Cow position:chr11:17859966-17860295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):101, 140

               
               
               Conread position:56-383
               
               
               Cow position:chr11:52297036-52297361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 76

               
               
               Conread position:56-384
               
               
               Cow position:chr11:39115660-39115352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:56-384
               
               
               Cow position:chr11:46580535-46580214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):102, 42

               
               
               Conread position:57-172
               
               
               Cow position:chr11:42452720-42452834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:57-220
               
               
               Cow position:chr11:81175784-81175619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:57-234
               
               
               Cow position:chr11:71814888-71814715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:57-241
               
               
               Cow position:chr11:80007876-80008066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):64, 119

               
               
               Conread position:57-246
               
               
               Cow position:chr11:42206602-42206418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:57-247
               
               
               Cow position:chr11:9279618-9279428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):42, 132

               
               
               Conread position:57-248
               
               
               Cow position:chr11:66685724-66685911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):154, 88

               
               
               Conread position:57-260
               
               
               Cow position:chr11:48315213-48315414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:57-263
               
               
               Cow position:chr11:2484610-2484816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):77, 27

               
               
               Conread position:57-265
               
               
               Cow position:chr11:63165465-63165669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:57-274
               
               
               Cow position:chr11:3896512-3896731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):72, 185

               
               
               Conread position:57-325
               
               
               Cow position:chr11:63866475-63866737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):119, 88

               
               
               Conread position:57-332
               
               
               Cow position:chr11:41603515-41603779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):207, 65

               
               
               Conread position:57-332
               
               
               Cow position:chr11:42183225-42182951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):62, 170

               
               
               Conread position:57-344
               
               
               Cow position:chr11:39060419-39060702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 88

               
               
               Conread position:57-350
               
               
               Cow position:chr11:48086104-48085808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):165, 95

               
               
               Conread position:57-365
               
               
               Cow position:chr11:42067050-42066738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):187, 283

               
               
               Conread position:57-378
               
               
               Cow position:chr11:49149232-49148904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):158, 71

               
               
               Conread position:57-378
               
               
               Cow position:chr11:76653207-76652887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):133, 210

               
               
               Conread position:57-382
               
               
               Cow position:chr11:72375480-72375825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):87, 132

               
               
               Conread position:57-384
               
               
               Cow position:chr11:11558357-11558026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:57-384
               
               
               Cow position:chr11:20762038-20761705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 161

               
               
               Conread position:57-384
               
               
               Cow position:chr11:21728103-21728410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):183, 26

               
               
               Conread position:57-384
               
               
               Cow position:chr11:47899436-47899138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):210, 64

               
               
               Conread position:57-384
               
               
               Cow position:chr11:48296211-48295891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 48

               
               
               Conread position:57-384
               
               
               Cow position:chr11:55334105-55333770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):118, 238

               
               
               Conread position:57-384
               
               
               Cow position:chr11:68904902-68905215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):212, 65

               
               
               Conread position:57-389
               
               
               Cow position:chr11:21421752-21422082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):92, 133

               
               
               Conread position:57-394
               
               
               Cow position:chr11:70978549-70978878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 55

               
               
               Conread position:58-272
               
               
               Cow position:chr11:46427222-46427438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):79, 33

               
               
               Conread position:58-304
               
               
               Cow position:chr11:82730799-82731061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:58-326
               
               
               Cow position:chr11:64105178-64104913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):113, 81

               
               
               Conread position:58-328
               
               
               Cow position:chr11:29308767-29308489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 137

               
               
               Conread position:58-340
               
               
               Cow position:chr11:55911462-55911732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):206, 150

               
               
               Conread position:58-346
               
               
               Cow position:chr11:32881330-32881047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:58-348
               
               
               Cow position:chr11:6194573-6194302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:58-378
               
               
               Cow position:chr11:30721285-30720962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):88, 132

               
               
               Conread position:58-382
               
               
               Cow position:chr11:18699055-18698738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):206, 83

               
               
               Conread position:58-383
               
               
               Cow position:chr11:24438034-24438365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):62, 71

               
               
               Conread position:58-383
               
               
               Cow position:chr11:32693309-32693612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):63, 34

               
               
               Conread position:58-383
               
               
               Cow position:chr11:51293226-51293552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):171, 67

               
               
               Conread position:58-384
               
               
               Cow position:chr11:1848980-1849303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):124, 37

               
               
               Conread position:58-384
               
               
               Cow position:chr11:38639284-38638978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:58-384
               
               
               Cow position:chr11:74316891-74316571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:59-220
               
               
               Cow position:chr11:36300400-36300559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):90, 32

               
               
               Conread position:59-228
               
               
               Cow position:chr11:36847353-36847182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):97, 128

               
               
               Conread position:59-230
               
               
               Cow position:chr11:47110440-47110261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:59-244
               
               
               Cow position:chr11:30322310-30322494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:59-244
               
               
               Cow position:chr11:79666078-79666263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):88, 34

               
               
               Conread position:59-245
               
               
               Cow position:chr11:26442319-26442508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):85, 130

               
               
               Conread position:59-262
               
               
               Cow position:chr11:56115121-56114919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:59-267
               
               
               Cow position:chr11:25604137-25603924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 206

               
               
               Conread position:59-286
               
               
               Cow position:chr11:72292745-72292508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:59-324
               
               
               Cow position:chr11:82740676-82740426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):205, 32

               
               
               Conread position:59-332
               
               
               Cow position:chr11:3715423-3715146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):85, 33

               
               
               Conread position:59-376
               
               
               Cow position:chr11:62742464-62742766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):205, 86

               
               
               Conread position:59-378
               
               
               Cow position:chr11:23251415-23251728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):151, 36

               
               
               Conread position:59-378
               
               
               Cow position:chr11:55744653-55744342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):67, 127

               
               
               Conread position:59-378
               
               
               Cow position:chr11:68913327-68913007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):90, 129

               
               
               Conread position:59-383
               
               
               Cow position:chr11:13592923-13592596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):85, 230

               
               
               Conread position:59-383
               
               
               Cow position:chr11:27248672-27248352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 87

               
               
               Conread position:59-383
               
               
               Cow position:chr11:76369346-76369661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):90, 42

               
               
               Conread position:59-384
               
               
               Cow position:chr11:6233694-6234021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):85, 231

               
               
               Conread position:59-384
               
               
               Cow position:chr11:35347567-35347896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):87, 119

               
               
               Conread position:59-384
               
               
               Cow position:chr11:42884601-42884919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):87, 128

               
               
               Conread position:59-384
               
               
               Cow position:chr11:53778804-53778473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):69, 229

               
               
               Conread position:59-384
               
               
               Cow position:chr11:64029083-64029399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):90, 110

               
               
               Conread position:59-384
               
               
               Cow position:chr11:65157221-65157553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:59-384
               
               
               Cow position:chr11:67600962-67600641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):205, 86

               
               
               Conread position:59-384
               
               
               Cow position:chr11:76890225-76889907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):68, 21

               
               
               Conread position:59-384
               
               
               Cow position:chr11:79728488-79728811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):61, 48

               
               
               Conread position:59-384
               
               
               Cow position:chr11:82940446-82940763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):76, 36

               
               
               Conread position:59-385
               
               
               Cow position:chr11:77758577-77758901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):90, 60

               
               
               Conread position:60-218
               
               
               Cow position:chr11:17309585-17309427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 122

               
               
               Conread position:60-228
               
               
               Cow position:chr11:53651823-53651655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:60-238
               
               
               Cow position:chr11:81065867-81066045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):104, 125

               
               
               Conread position:60-256
               
               
               Cow position:chr11:30986819-30986628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:60-269
               
               
               Cow position:chr11:20205675-20205879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):203, 81

               
               
               Conread position:60-270
               
               
               Cow position:chr11:30842842-30843047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):204, 32

               
               
               Conread position:60-273
               
               
               Cow position:chr11:30894820-30895034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:60-274
               
               
               Cow position:chr11:15382312-15382535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:60-274
               
               
               Cow position:chr11:35351850-35352071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 133

               
               
               Conread position:60-289
               
               
               Cow position:chr11:21886013-21885786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:60-289
               
               
               Cow position:chr11:68883903-68883670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 118

               
               
               Conread position:60-296
               
               
               Cow position:chr11:10956691-10956929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):104, 67

               
               
               Conread position:60-300
               
               
               Cow position:chr11:18447318-18447548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):204, 68

               
               
               Conread position:60-332
               
               
               Cow position:chr11:62812769-62813041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 32

               
               
               Conread position:60-342
               
               
               Cow position:chr11:53817038-53816759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):89, 180

               
               
               Conread position:60-346
               
               
               Cow position:chr11:5217277-5217570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 117

               
               
               Conread position:60-346
               
               
               Cow position:chr11:73573830-73573543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):87, 134

               
               
               Conread position:60-348
               
               
               Cow position:chr11:29960475-29960190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 24

               
               
               Conread position:60-382
               
               
               Cow position:chr11:19500621-19500919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):298, 68

               
               
               Conread position:60-382
               
               
               Cow position:chr11:67615069-67615382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 31

               
               
               Conread position:60-384
               
               
               Cow position:chr11:2788578-2788238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:60-384
               
               
               Cow position:chr11:2917410-2917727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 68

               
               
               Conread position:60-384
               
               
               Cow position:chr11:5201463-5201791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):90, 31

               
               
               Conread position:60-384
               
               
               Cow position:chr11:5486199-5485868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):33, 71

               
               
               Conread position:60-384
               
               
               Cow position:chr11:23271823-23272141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):97, 51

               
               
               Conread position:60-384
               
               
               Cow position:chr11:30830440-30830757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 26

               
               
               Conread position:60-384
               
               
               Cow position:chr11:32126799-32126469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 125

               
               
               Conread position:60-384
               
               
               Cow position:chr11:41215916-41215600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):84, 46

               
               
               Conread position:60-384
               
               
               Cow position:chr11:44032189-44031861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 31

               
               
               Conread position:60-384
               
               
               Cow position:chr11:59463457-59463778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 10

               
               
               Conread position:60-384
               
               
               Cow position:chr11:64103868-64104200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):104, 56

               
               
               Conread position:60-384
               
               
               Cow position:chr11:70251097-70250784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):153, 25

               
               
               Conread position:60-384
               
               
               Cow position:chr11:75479840-75480170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:60-384
               
               
               Cow position:chr11:78380886-78381196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):104, 76

               
               
               Conread position:61-231
               
               
               Cow position:chr11:4621253-4621419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:61-249
               
               
               Cow position:chr11:42084491-42084682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 134

               
               
               Conread position:61-306
               
               
               Cow position:chr11:25119754-25119997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):203, 86

               
               
               Conread position:61-329
               
               
               Cow position:chr11:33409084-33409347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):203, 30

               
               
               Conread position:61-331
               
               
               Cow position:chr11:72884416-72884675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):26, 70

               
               
               Conread position:61-378
               
               
               Cow position:chr11:2874584-2874257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):88, 129

               
               
               Conread position:61-383
               
               
               Cow position:chr11:45646416-45646735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 14

               
               
               Conread position:61-383
               
               
               Cow position:chr11:62663059-62663361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:61-385
               
               
               Cow position:chr11:11469472-11469778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr11:53486979-53487130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:62-254
               
               
               Cow position:chr11:6255828-6256014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:62-272
               
               
               Cow position:chr11:29786312-29786529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:62-343
               
               
               Cow position:chr11:53510314-53510604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 167

               
               
               Conread position:62-384
               
               
               Cow position:chr11:71390393-71390705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 65

               
               
               Conread position:63-248
               
               
               Cow position:chr11:76248226-76248044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):86, 28

               
               
               Conread position:63-378
               
               
               Cow position:chr11:19247025-19247331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):102, 35

               
               
               Conread position:63-388
               
               
               Cow position:chr11:81134989-81135311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):201, 88

               
               
               Conread position:64-234
               
               
               Cow position:chr11:29782336-29782174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:64-249
               
               
               Cow position:chr11:63485111-63484932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:64-326
               
               
               Cow position:chr11:41313483-41313740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):200, 34

               
               
               Conread position:64-341
               
               
               Cow position:chr11:42159883-42160159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 30

               
               
               Conread position:64-348
               
               
               Cow position:chr11:46999165-46998879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 176

               
               
               Conread position:64-383
               
               
               Cow position:chr11:21843960-21844273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 123

               
               
               Conread position:64-383
               
               
               Cow position:chr11:42296448-42296758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 52

               
               
               Conread position:64-383
               
               
               Cow position:chr11:48544615-48544296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):113, 76

               
               
               Conread position:64-383
               
               
               Cow position:chr11:51729453-51729148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 57

               
               
               Conread position:65-337
               
               
               Cow position:chr11:80564475-80564198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 108

               
               
               Conread position:65-384
               
               
               Cow position:chr11:24602136-24601832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):13, 30

               
               
               Conread position:67-354
               
               
               Cow position:chr11:26274790-26275068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 62

               
               
               Conread position:67-384
               
               
               Cow position:chr11:13042972-13043287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):197, 78

               
               
               Conread position:68-209
               
               
               Cow position:chr11:33289294-33289429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:68-211
               
               
               Cow position:chr11:85985874-85986018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:68-249
               
               
               Cow position:chr11:27760693-27760511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 33

               
               
               Conread position:68-359
               
               
               Cow position:chr11:17036357-17036646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 60

               
               
               Conread position:68-378
               
               
               Cow position:chr11:56676100-56675782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):76, 66

               
               
               Conread position:69-235
               
               
               Cow position:chr11:15278844-15279005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:69-377
               
               
               Cow position:chr11:35980967-35981278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):78, 109

               
               
               Conread position:69-380
               
               
               Cow position:chr11:30209649-30209959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):74, 25

               
               
               Conread position:70-384
               
               
               Cow position:chr11:32199116-32198795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):105, 56

               
               
               Conread position:71-378
               
               
               Cow position:chr11:31337551-31337247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):189, 55

               
               
               Conread position:71-384
               
               
               Cow position:chr11:47755208-47755526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):78, 175

               
               
               Conread position:71-384
               
               
               Cow position:chr11:77319584-77319271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 81

               
               
               Conread position:72-238
               
               
               Cow position:chr11:5467252-5467086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):84, 54

               
               
               Conread position:72-247
               
               
               Cow position:chr11:60720283-60720460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):75, 118

               
               
               Conread position:72-252
               
               
               Cow position:chr11:49207882-49207701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 146

               
               
               Conread position:72-268
               
               
               Cow position:chr11:34467733-34467545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:72-272
               
               
               Cow position:chr11:62889721-62889924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):75, 103

               
               
               Conread position:72-283
               
               
               Cow position:chr11:39554018-39554239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 116

               
               
               Conread position:72-295
               
               
               Cow position:chr11:39619880-39620093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):23, 75

               
               
               Conread position:72-319
               
               
               Cow position:chr11:36920407-36920656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):82, 23

               
               
               Conread position:72-341
               
               
               Cow position:chr11:81160052-81159781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):82, 103

               
               
               Conread position:72-344
               
               
               Cow position:chr11:69016148-69015870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):71, 104

               
               
               Conread position:72-345
               
               
               Cow position:chr11:18910713-18910981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):136, 73

               
               
               Conread position:72-349
               
               
               Cow position:chr11:17083142-17083417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 71

               
               
               Conread position:72-368
               
               
               Cow position:chr11:36981736-36981442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):68, 33

               
               
               Conread position:72-377
               
               
               Cow position:chr11:73353896-73354188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):192, 68

               
               
               Conread position:72-378
               
               
               Cow position:chr11:45872139-45872452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):82, 103

               
               
               Conread position:72-383
               
               
               Cow position:chr11:28993577-28993872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:72-384
               
               
               Cow position:chr11:8524947-8525252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):192, 80

               
               
               Conread position:72-384
               
               
               Cow position:chr11:68112088-68112404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 114

               
               
               Conread position:72-385
               
               
               Cow position:chr11:66734003-66733693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):58, 89

               
               
               Conread position:72-390
               
               
               Cow position:chr11:48474880-48474554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:73-332
               
               
               Cow position:chr11:30355216-30354968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):23, 46

               
               
               Conread position:73-344
               
               
               Cow position:chr11:15285454-15285718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):189, 36

               
               
               Conread position:73-382
               
               
               Cow position:chr11:47772212-47772531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 288

               
               
               Conread position:73-384
               
               
               Cow position:chr11:18852073-18851777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 70

               
               
               Conread position:74-273
               
               
               Cow position:chr11:63975300-63975098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:74-346
               
               
               Cow position:chr11:14875599-14875881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:74-383
               
               
               Cow position:chr11:6633895-6633571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 292

               
               
               Conread position:74-384
               
               
               Cow position:chr11:34144750-34145055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):70, 144

               
               
               Conread position:74-384
               
               
               Cow position:chr11:86132299-86132595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):301, 49

               
               
               Conread position:76-384
               
               
               Cow position:chr11:83066659-83066353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):68, 63

               
               
               Conread position:79-273
               
               
               Cow position:chr11:78544449-78544252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):75, 97

               
               
               Conread position:79-301
               
               
               Cow position:chr11:75090055-75090276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):68, 16

               
               
               Conread position:79-346
               
               
               Cow position:chr11:36217536-36217795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):180, 84

               
               
               Conread position:79-355
               
               
               Cow position:chr11:31875258-31874980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 98

               
               
               Conread position:79-368
               
               
               Cow position:chr11:35791656-35791937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):98, 65

               
               
               Conread position:79-384
               
               
               Cow position:chr11:3780251-3780563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):90, 23

               
               
               Conread position:80-362
               
               
               Cow position:chr11:75178061-75177775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):64, 118

               
               
               Conread position:80-384
               
               
               Cow position:chr11:4674281-4674589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):76, 27

               
               
               Conread position:81-378
               
               
               Cow position:chr11:3703114-3702816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):65, 108

               
               
               Conread position:81-384
               
               
               Cow position:chr11:81162284-81162574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):7, 66

               
               
               Conread position:81-384
               
               
               Cow position:chr11:81406005-81406300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):68, 95

               
               
               Conread position:82-379
               
               
               Cow position:chr11:38670851-38670547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 164

               
               
               Conread position:82-384
               
               
               Cow position:chr11:8544855-8545154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):49, 95

               
               
               Conread position:82-394
               
               
               Cow position:chr11:10992423-10992131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):120, 45

               
               
               Conread position:86-383
               
               
               Cow position:chr11:13191393-13191082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):102, 212

               
               
               Conread position:86-384
               
               
               Cow position:chr11:61203323-61203024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):51, 33

               
               
               Conread position:87-317
               
               
               Cow position:chr11:56499994-56499763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:87-382
               
               
               Cow position:chr11:59903048-59902751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):62, 103

               
               
               Conread position:87-384
               
               
               Cow position:chr11:39499511-39499217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:88-378
               
               
               Cow position:chr11:87155676-87155384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):49, 102

               
               
               Conread position:88-384
               
               
               Cow position:chr11:17493638-17493337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):54, 28

               
               
               Conread position:90-332
               
               
               Cow position:chr11:24599242-24599479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):174, 33

               
               
               Conread position:90-384
               
               
               Cow position:chr11:23385085-23385387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 237

               
               
               Conread position:90-384
               
               
               Cow position:chr11:34121351-34121059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 57

               
               
               Conread position:91-258
               
               
               Cow position:chr11:17807809-17807979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):80, 96

               
               
               Conread position:91-321
               
               
               Cow position:chr11:31410728-31410962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):171, 55

               
               
               Conread position:92-347
               
               
               Cow position:chr11:19232799-19233058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):59, 171

               
               
               Conread position:92-383
               
               
               Cow position:chr11:68206695-68206979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):137, 49

               
               
               Conread position:95-378
               
               
               Cow position:chr11:71868455-71868739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):69, 90

               
               
               Conread position:95-384
               
               
               Cow position:chr11:3393066-3393351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 46

               
               
               Conread position:98-378
               
               
               Cow position:chr11:36112563-36112291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):46, 55

               
               
               Conread position:99-286
               
               
               Cow position:chr11:37425010-37425187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):176, 47

               
               
               Conread position:99-383
               
               
               Cow position:chr11:23586784-23586497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):26, 12

               
               
               Conread position:100-384
               
               
               Cow position:chr11:56187750-56187478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):166, 52

               
               
               Conread position:101-380
               
               
               Cow position:chr11:18706687-18706955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):114, 44

               
               
               Conread position:102-384
               
               
               Cow position:chr11:18243804-18244080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):162, 57

               
               
               Conread position:105-368
               
               
               Cow position:chr11:34113400-34113138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:105-368
               
               
               Cow position:chr11:81282091-81281822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):32, 71

               
               
               Conread position:105-384
               
               
               Cow position:chr11:32436476-32436190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 93

               
               
               Conread position:106-378
               
               
               Cow position:chr11:33414375-33414102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:107-384
               
               
               Cow position:chr11:59873059-59872790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):91, 38

               
               
               Conread position:111-378
               
               
               Cow position:chr11:6835667-6835399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):43, 65

               
               
               Conread position:114-378
               
               
               Cow position:chr11:83687304-83687563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:126-368
               
               
               Cow position:chr11:23232403-23232641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):115, 73

               
               
               Conread position:126-384
               
               
               Cow position:chr11:67747396-67747143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):140, 46

               
               
               Conread position:128-256
               
               
               Cow position:chr11:70741257-70741129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 41

               
               
               Conread position:128-317
               
               
               Cow position:chr11:79018946-79019135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):137, 24

               
               
               Conread position:128-348
               
               
               Cow position:chr11:26845482-26845700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:128-378
               
               
               Cow position:chr11:3234190-3233950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):136, 145

               
               
               Conread position:128-383
               
               
               Cow position:chr11:28644202-28643944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:128-384
               
               
               Cow position:chr11:377528-377787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):134, 23

               
               
               Conread position:128-384
               
               
               Cow position:chr11:20602339-20602086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):136, 18

               
               
               Conread position:128-384
               
               
               Cow position:chr11:40573219-40573474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):19, 85

               
               
               Conread position:128-384
               
               
               Cow position:chr11:44234468-44234212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:129-327
               
               
               Cow position:chr11:22747219-22747414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):121, 23

               
               
               Conread position:129-346
               
               
               Cow position:chr11:35803248-35803029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:129-378
               
               
               Cow position:chr11:83926154-83925915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:129-384
               
               
               Cow position:chr11:25387181-25386922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):115, 22

               
               
               Conread position:129-384
               
               
               Cow position:chr11:48496481-48496729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:129-384
               
               
               Cow position:chr11:61958633-61958888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):136, 23

               
               
               Conread position:129-384
               
               
               Cow position:chr11:70609908-70609644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):106, 18

               
               
               Conread position:130-294
               
               
               Cow position:chr11:62376361-62376524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):134, 75

               
               
               Conread position:130-378
               
               
               Cow position:chr11:40478740-40478985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):134, 153

               
               
               Conread position:130-383
               
               
               Cow position:chr11:59702602-59702346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):68, 21

               
               
               Conread position:130-384
               
               
               Cow position:chr11:36238888-36238642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):137, 22

               
               
               Conread position:131-299
               
               
               Cow position:chr11:48248104-48248272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):135, 157

               
               
               Conread position:131-341
               
               
               Cow position:chr11:69119406-69119193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:163
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:131-345
               
               
               Cow position:chr11:18588476-18588688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):128, 19

               
               
               Conread position:131-366
               
               
               Cow position:chr11:54334438-54334210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):26, 37

               
               
               Conread position:131-369
               
               
               Cow position:chr11:83033130-83033362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:131-372
               
               
               Cow position:chr11:41293706-41293948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):133, 154

               
               
               Conread position:131-378
               
               
               Cow position:chr11:70086444-70086193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):135, 69

               
               
               Conread position:131-381
               
               
               Cow position:chr11:63847958-63847711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:131-381
               
               
               Cow position:chr11:83230289-83230529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):133, 114

               
               
               Conread position:131-384
               
               
               Cow position:chr11:952376-952130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):133, 15

               
               
               Conread position:131-384
               
               
               Cow position:chr11:7590300-7590052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):133, 91

               
               
               Conread position:131-384
               
               
               Cow position:chr11:16906939-16907184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):104, 90

               
               
               Conread position:131-384
               
               
               Cow position:chr11:30955112-30954857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 156

               
               
               Conread position:131-384
               
               
               Cow position:chr11:34963179-34962921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):133, 16

               
               
               Conread position:131-384
               
               
               Cow position:chr11:44036831-44036577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):135, 88

               
               
               Conread position:131-384
               
               
               Cow position:chr11:48272312-48272056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):133, 157

               
               
               Conread position:131-384
               
               
               Cow position:chr11:50073053-50072809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):19, 150

               
               
               Conread position:131-384
               
               
               Cow position:chr11:56518199-56518450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):23, 46

               
               
               Conread position:131-384
               
               
               Cow position:chr11:62226099-62225845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):22, 126

               
               
               Conread position:131-384
               
               
               Cow position:chr11:69076022-69075767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):135, 113

               
               
               Conread position:131-384
               
               
               Cow position:chr11:70278001-70278250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):246, 156

               
               
               Conread position:131-384
               
               
               Cow position:chr11:73924451-73924701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:131-384
               
               
               Cow position:chr11:77128772-77128518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):128, 210

               
               
               Conread position:132-308
               
               
               Cow position:chr11:19606687-19606512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):132, 19

               
               
               Conread position:132-366
               
               
               Cow position:chr11:36658713-36658944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):132, 29

               
               
               Conread position:132-368
               
               
               Cow position:chr11:23137944-23138184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):45, 19

               
               
               Conread position:132-368
               
               
               Cow position:chr11:33311086-33310847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:132-378
               
               
               Cow position:chr11:17831110-17831352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:132-383
               
               
               Cow position:chr11:44575644-44575875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):131, 20

               
               
               Conread position:132-384
               
               
               Cow position:chr11:1070982-1071233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:132-384
               
               
               Cow position:chr11:2092436-2092198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:132-384
               
               
               Cow position:chr11:62150783-62151026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):132, 89

               
               
               Conread position:133-290
               
               
               Cow position:chr11:34413232-34413389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):131, 13

               
               
               Conread position:133-378
               
               
               Cow position:chr11:71501024-71501267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):131, 18

               
               
               Conread position:134-289
               
               
               Cow position:chr11:47882911-47882756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:134-301
               
               
               Cow position:chr11:36328931-36329091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):130, 11

               
               
               Conread position:134-321
               
               
               Cow position:chr11:3790949-3790754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):109, 22

               
               
               Conread position:134-384
               
               
               Cow position:chr11:44636648-44636899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 12

               
               
               Conread position:135-366
               
               
               Cow position:chr11:33345551-33345320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:135-384
               
               
               Cow position:chr11:43898244-43897999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):129, 17

               
               
               Conread position:135-384
               
               
               Cow position:chr11:63909561-63909799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):129, 17

               
               
               Conread position:136-377
               
               
               Cow position:chr11:80530465-80530234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):131, 79

               
               
               Conread position:136-384
               
               
               Cow position:chr11:36799203-36799444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):121, 16

               
               
               Conread position:137-384
               
               
               Cow position:chr11:5569-5325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):127, 155

               
               
               Conread position:138-384
               
               
               Cow position:chr11:16342124-16342381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):126, 250

               
               
               Conread position:139-382
               
               
               Cow position:chr11:47545238-47544991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 88

               
               
               Conread position:140-314
               
               
               Cow position:chr11:30484022-30483845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):124, 148

               
               
               Conread position:142-343
               
               
               Cow position:chr11:22499266-22499464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):122, 76

               
               
               Conread position:142-383
               
               
               Cow position:chr11:86720317-86720552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):22, 49

               
               
               Conread position:146-326
               
               
               Cow position:chr11:53279619-53279798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):118, 15

               
               
               Conread position:146-346
               
               
               Cow position:chr11:32690874-32691067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):118, 129

               
               
               Conread position:146-377
               
               
               Cow position:chr11:1362371-1362609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):118, 236

               
               
               Conread position:146-378
               
               
               Cow position:chr11:80761281-80761514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:146-384
               
               
               Cow position:chr11:18572897-18572660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):118, 98

               
               
               Conread position:146-384
               
               
               Cow position:chr11:23128443-23128684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):117, 142

               
               
               Conread position:146-384
               
               
               Cow position:chr11:35684404-35684636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:181
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):120, 139

               
               
               Conread position:146-384
               
               
               Cow position:chr11:42359216-42358978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):28, 152

               
               
               Conread position:146-384
               
               
               Cow position:chr11:76114739-76114513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):117, 41

               
               
               Conread position:147-283
               
               
               Cow position:chr11:16842892-16843025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):117, 14

               
               
               Conread position:147-343
               
               
               Cow position:chr11:12111363-12111554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):117, 69

               
               
               Conread position:147-351
               
               
               Cow position:chr11:28395571-28395362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 28

               
               
               Conread position:147-365
               
               
               Cow position:chr11:31506946-31506722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:147-367
               
               
               Cow position:chr11:6194300-6194081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):117, 18

               
               
               Conread position:147-373
               
               
               Cow position:chr11:64867925-64868145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):99, 103

               
               
               Conread position:147-378
               
               
               Cow position:chr11:46953043-46952814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):116, 138

               
               
               Conread position:147-383
               
               
               Cow position:chr11:35775433-35775198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):156, 133

               
               
               Conread position:147-384
               
               
               Cow position:chr11:5031680-5031916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):122, 86

               
               
               Conread position:147-384
               
               
               Cow position:chr11:8147803-8148038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):117, 143

               
               
               Conread position:147-385
               
               
               Cow position:chr11:73512348-73512574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):227, 14

               
               
               Conread position:147-403
               
               
               Cow position:chr11:65767295-65767037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:148-365
               
               
               Cow position:chr11:14466392-14466610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):116, 215

               
               
               Conread position:148-384
               
               
               Cow position:chr11:53553310-53553095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):116, 26

               
               
               Conread position:148-385
               
               
               Cow position:chr11:21852207-21852446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):116, 196

               
               
               Conread position:149-384
               
               
               Cow position:chr11:10213475-10213705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 41

               
               
               Conread position:151-381
               
               
               Cow position:chr11:8428603-8428363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):113, 126

               
               
               Conread position:151-383
               
               
               Cow position:chr11:50778459-50778233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:151-384
               
               
               Cow position:chr11:11232364-11232596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):114, 70

               
               
               Conread position:151-384
               
               
               Cow position:chr11:17661175-17660953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):115, 71

               
               
               Conread position:151-384
               
               
               Cow position:chr11:31352460-31352711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:152-321
               
               
               Cow position:chr11:28168332-28168503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:152-348
               
               
               Cow position:chr11:249391-249590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):112, 134

               
               
               Conread position:152-382
               
               
               Cow position:chr11:63469966-63469738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):110, 183

               
               
               Conread position:152-384
               
               
               Cow position:chr11:80819914-80820140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):110, 64

               
               
               Conread position:153-332
               
               
               Cow position:chr11:35873913-35874095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):109, 139

               
               
               Conread position:153-384
               
               
               Cow position:chr11:45897959-45898194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):13, 137

               
               
               Conread position:153-384
               
               
               Cow position:chr11:64090008-64090225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):111, 8

               
               
               Conread position:153-401
               
               
               Cow position:chr11:33341055-33341302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):111, 229

               
               
               Conread position:154-282
               
               
               Cow position:chr11:16801868-16801992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 85

               
               
               Conread position:154-383
               
               
               Cow position:chr11:34829697-34829921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):109, 65

               
               
               Conread position:155-378
               
               
               Cow position:chr11:80537574-80537351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):109, 14

               
               
               Conread position:155-379
               
               
               Cow position:chr11:64638438-64638665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):109, 78

               
               
               Conread position:155-383
               
               
               Cow position:chr11:41272225-41272001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):109, 98

               
               
               Conread position:155-384
               
               
               Cow position:chr11:16540950-16540721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):109, 200

               
               
               Conread position:155-384
               
               
               Cow position:chr11:48306259-48306485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):109, 138

               
               
               Conread position:155-384
               
               
               Cow position:chr11:49934643-49934879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:156-363
               
               
               Cow position:chr11:84490412-84490610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):9, 81

               
               
               Conread position:157-376
               
               
               Cow position:chr11:52983761-52983547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):107, 128

               
               
               Conread position:158-384
               
               
               Cow position:chr11:44642207-44642428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:161-332
               
               
               Cow position:chr11:70620126-70619952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:161-366
               
               
               Cow position:chr11:66424798-66425004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):103, 17

               
               
               Conread position:164-384
               
               
               Cow position:chr11:30120585-30120807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 12

               
               
               Conread position:165-384
               
               
               Cow position:chr11:58588422-58588206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):99, 39

               
               
               Conread position:171-384
               
               
               Cow position:chr11:82796217-82796427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):91, 117

               
               
               Conread position:174-353
               
               
               Cow position:chr11:75965583-75965760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):90, 108

               
               
               Conread position:174-354
               
               
               Cow position:chr11:69392631-69392446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):90, 114

               
               
               Conread position:175-378
               
               
               Cow position:chr11:7497579-7497778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 87

               
               
               Conread position:175-384
               
               
               Cow position:chr11:10620258-10620466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):7, 160

               
               
               Conread position:179-325
               
               
               Cow position:chr11:54218778-54218634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):85, 106

               
               
               Conread position:180-383
               
               
               Cow position:chr11:16261962-16262166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):84, 107

               
               
               Conread position:180-384
               
               
               Cow position:chr11:38874338-38874545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:180-384
               
               
               Cow position:chr11:65444781-65444989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):87, 7

               
               
               Conread position:181-383
               
               
               Cow position:chr11:70273369-70273165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):5, 119

               
               
               Conread position:182-290
               
               
               Cow position:chr11:42452875-42452980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):81, 40

               
               
               Conread position:182-382
               
               
               Cow position:chr11:67550317-67550512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):83, 91

               
               
               Conread position:182-384
               
               
               Cow position:chr11:24937726-24937523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):82, 194

               
               
               Conread position:183-385
               
               
               Cow position:chr11:3833302-3833495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):5, 45

               
               
               Conread position:185-368
               
               
               Cow position:chr11:80787849-80788034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):75, 100

               
               
               Conread position:185-384
               
               
               Cow position:chr11:34032145-34032344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):79, 38

               
               
               Conread position:185-384
               
               
               Cow position:chr11:65409096-65409296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):79, 53

               
               
               Conread position:187-374
               
               
               Cow position:chr11:21497578-21497390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):77, 99

               
               
               Conread position:187-384
               
               
               Cow position:chr11:49231929-49231735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 98

               
               
               Conread position:189-384
               
               
               Cow position:chr11:67804803-67804610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):75, 93

               
               
               Conread position:191-366
               
               
               Cow position:chr11:18340989-18341164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):74, 55

               
               
               Conread position:191-384
               
               
               Cow position:chr11:30911952-30912131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):75, 13

               
               
               Conread position:191-384
               
               
               Cow position:chr11:41175897-41176091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):75, 94

               
               
               Conread position:193-384
               
               
               Cow position:chr11:30597043-30596845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:194-368
               
               
               Cow position:chr11:42002899-42003069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:194-384
               
               
               Cow position:chr11:32378236-32378045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:194-384
               
               
               Cow position:chr11:41811866-41812051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):65, 89

               
               
               Conread position:194-384
               
               
               Cow position:chr11:60143253-60143441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:198-368
               
               
               Cow position:chr11:485584-485756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):62, 117

               
               
               Conread position:202-384
               
               
               Cow position:chr11:42792932-42793114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):61, 86

               
               
               Conread position:204-378
               
               
               Cow position:chr11:48041994-48042171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):37, 100

               
               
               Conread position:204-382
               
               
               Cow position:chr11:57170791-57170969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):60, 81

               
               
               Conread position:204-384
               
               
               Cow position:chr11:955407-955224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):10, 146

               
               
               Conread position:206-384
               
               
               Cow position:chr11:8339369-8339547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):59, 140

               
               
               Conread position:206-384
               
               
               Cow position:chr11:65431091-65430918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):90, 55

               
               
               Conread position:207-384
               
               
               Cow position:chr11:18591398-18591573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):57, 78

               
               
               Conread position:211-378
               
               
               Cow position:chr11:21427961-21428128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):53, 88

               
               
               Conread position:211-384
               
               
               Cow position:chr11:6154440-6154271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):53, 25

               
               
               Conread position:217-384
               
               
               Cow position:chr11:2309899-2309731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):24, 160

               
               
               Conread position:222-384
               
               
               Cow position:chr11:16251223-16251388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:224-383
               
               
               Cow position:chr11:33824869-33825031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 83

               
               
               Conread position:231-382
               
               
               Cow position:chr11:4412010-4412154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 47

               
               
               Conread position:244-384
               
               
               Cow position:chr11:70740978-70741117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 41

               
               
               Conread position:443-927
               
               
               Cow position:chr11:24315354-24314870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 131

               
               
               Conread position:1-241
               
               
               Cow position:chr12:22048134-22047905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):145, 26

               
               
               Conread position:1-255
               
               
               Cow position:chr12:39149832-39150085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):128, 49

               
               
               Conread position:1-273
               
               
               Cow position:chr12:11977908-11977633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):161, 63

               
               
               Conread position:1-384
               
               
               Cow position:chr12:28704042-28704415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):160, 23

               
               
               Conread position:2-252
               
               
               Cow position:chr12:10950180-10950433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):38, 175

               
               
               Conread position:2-273
               
               
               Cow position:chr12:31067216-31067493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):21, 53

               
               
               Conread position:3-241
               
               
               Cow position:chr12:30649656-30649421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):138, 20

               
               
               Conread position:3-302
               
               
               Cow position:chr12:42630824-42631120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):150, 26

               
               
               Conread position:3-340
               
               
               Cow position:chr12:39746629-39746288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 62

               
               
               Conread position:4-326
               
               
               Cow position:chr12:25344002-25343678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):25, 175

               
               
               Conread position:4-384
               
               
               Cow position:chr12:12198694-12199066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):156, 27

               
               
               Conread position:5-342
               
               
               Cow position:chr12:18103400-18103731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:6-262
               
               
               Cow position:chr12:44542474-44542226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:6-345
               
               
               Cow position:chr12:33142012-33141669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):178, 17

               
               
               Conread position:7-255
               
               
               Cow position:chr12:1952590-1952834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 139

               
               
               Conread position:7-379
               
               
               Cow position:chr12:36314049-36313705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):105, 22

               
               
               Conread position:8-384
               
               
               Cow position:chr12:38774032-38774402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:10-355
               
               
               Cow position:chr12:38851813-38852163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):27, 43

               
               
               Conread position:11-366
               
               
               Cow position:chr12:7110419-7110056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:18-368
               
               
               Cow position:chr12:20071368-20071721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):78, 11

               
               
               Conread position:19-384
               
               
               Cow position:chr12:15358546-15358170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:254
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):41, 24

               
               
               Conread position:20-382
               
               
               Cow position:chr12:1889376-1889740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):28, 89

               
               
               Conread position:23-368
               
               
               Cow position:chr12:36500746-36501090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 122

               
               
               Conread position:25-384
               
               
               Cow position:chr12:42160366-42160711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):129, 23

               
               
               Conread position:26-272
               
               
               Cow position:chr12:11860895-11860649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):128, 27

               
               
               Conread position:26-347
               
               
               Cow position:chr12:33495428-33495107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:27-269
               
               
               Cow position:chr12:23106129-23105890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:27-378
               
               
               Cow position:chr12:25027560-25027928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:250
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):36, 161

               
               
               Conread position:28-255
               
               
               Cow position:chr12:31547792-31547564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):60, 36

               
               
               Conread position:28-385
               
               
               Cow position:chr12:31530489-31530124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):116, 22

               
               
               Conread position:29-203
               
               
               Cow position:chr12:15151693-15151850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:29-211
               
               
               Cow position:chr12:8711176-8710994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 118

               
               
               Conread position:29-314
               
               
               Cow position:chr12:42749634-42749348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:29-328
               
               
               Cow position:chr12:21780354-21780058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):125, 28

               
               
               Conread position:29-339
               
               
               Cow position:chr12:41217259-41216949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 25

               
               
               Conread position:29-384
               
               
               Cow position:chr12:18388105-18388444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:261
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):87, 22

               
               
               Conread position:30-272
               
               
               Cow position:chr12:29966298-29966056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 156

               
               
               Conread position:30-332
               
               
               Cow position:chr12:29357875-29358167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):233, 41

               
               
               Conread position:30-384
               
               
               Cow position:chr12:4371440-4371067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:31-203
               
               
               Cow position:chr12:38165353-38165522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:31-206
               
               
               Cow position:chr12:37420313-37420490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:31-256
               
               
               Cow position:chr12:6958411-6958185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):30, 127

               
               
               Conread position:31-257
               
               
               Cow position:chr12:19061319-19061541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:31-272
               
               
               Cow position:chr12:4594690-4594450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 83

               
               
               Conread position:31-328
               
               
               Cow position:chr12:9065748-9065460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):113, 22

               
               
               Conread position:31-378
               
               
               Cow position:chr12:30803790-30804129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:31-384
               
               
               Cow position:chr12:33976397-33976039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):15, 260

               
               
               Conread position:31-384
               
               
               Cow position:chr12:40910094-40910451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 144

               
               
               Conread position:32-210
               
               
               Cow position:chr12:40434855-40435031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:32-364
               
               
               Cow position:chr12:29674952-29675279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):114, 21

               
               
               Conread position:32-377
               
               
               Cow position:chr12:3848864-3849222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:32-383
               
               
               Cow position:chr12:35310495-35310835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:33-252
               
               
               Cow position:chr12:39311597-39311375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):96, 31

               
               
               Conread position:33-252
               
               
               Cow position:chr12:43474943-43474730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:33-347
               
               
               Cow position:chr12:37814438-37814749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):114, 31

               
               
               Conread position:33-367
               
               
               Cow position:chr12:43559954-43560296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:33-380
               
               
               Cow position:chr12:22284935-22285277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 20

               
               
               Conread position:33-384
               
               
               Cow position:chr12:30919621-30919258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):111, 24

               
               
               Conread position:34-213
               
               
               Cow position:chr12:13995603-13995789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 149

               
               
               Conread position:34-247
               
               
               Cow position:chr12:31237772-31237986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):127, 73

               
               
               Conread position:34-249
               
               
               Cow position:chr12:17250690-17250488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:34-252
               
               
               Cow position:chr12:25456606-25456378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):110, 29

               
               
               Conread position:34-378
               
               
               Cow position:chr12:6102642-6102983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:35-272
               
               
               Cow position:chr12:30946931-30946692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):119, 29

               
               
               Conread position:35-368
               
               
               Cow position:chr12:15784108-15783777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):104, 18

               
               
               Conread position:36-352
               
               
               Cow position:chr12:40360874-40360556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:37-238
               
               
               Cow position:chr12:39735483-39735680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):119, 27

               
               
               Conread position:37-282
               
               
               Cow position:chr12:38154886-38155132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):110, 16

               
               
               Conread position:37-290
               
               
               Cow position:chr12:12233066-12232814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 109

               
               
               Conread position:37-384
               
               
               Cow position:chr12:6241506-6241151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 20

               
               
               Conread position:37-384
               
               
               Cow position:chr12:11836413-11836071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:38-247
               
               
               Cow position:chr12:20439085-20439282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:38-263
               
               
               Cow position:chr12:29731494-29731273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:38-280
               
               
               Cow position:chr12:28787883-28788122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):218, 48

               
               
               Conread position:38-302
               
               
               Cow position:chr12:7183556-7183823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):93, 15

               
               
               Conread position:38-377
               
               
               Cow position:chr12:27563194-27563532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):16, 55

               
               
               Conread position:38-384
               
               
               Cow position:chr12:35368828-35368479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):26, 82

               
               
               Conread position:39-289
               
               
               Cow position:chr12:10827967-10827717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):126, 25

               
               
               Conread position:39-368
               
               
               Cow position:chr12:9710026-9710354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):112, 14

               
               
               Conread position:39-373
               
               
               Cow position:chr12:22287451-22287122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:39-378
               
               
               Cow position:chr12:43789205-43788882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):110, 14

               
               
               Conread position:40-378
               
               
               Cow position:chr12:46714561-46714217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 152

               
               
               Conread position:43-344
               
               
               Cow position:chr12:4194013-4193706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):98, 45

               
               
               Conread position:43-384
               
               
               Cow position:chr12:24663300-24662955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 146

               
               
               Conread position:46-383
               
               
               Cow position:chr12:37169771-37170104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 57

               
               
               Conread position:46-384
               
               
               Cow position:chr12:8943042-8943381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):75, 19

               
               
               Conread position:46-384
               
               
               Cow position:chr12:42684761-42685109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:47-244
               
               
               Cow position:chr12:26356535-26356733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):79, 17

               
               
               Conread position:47-282
               
               
               Cow position:chr12:34028952-34029188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):116, 17

               
               
               Conread position:47-325
               
               
               Cow position:chr12:36119141-36118862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):104, 17

               
               
               Conread position:47-379
               
               
               Cow position:chr12:15050452-15050774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):99, 18

               
               
               Conread position:48-234
               
               
               Cow position:chr12:583331-583522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:48-377
               
               
               Cow position:chr12:13988545-13988216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 5

               
               
               Conread position:48-378
               
               
               Cow position:chr12:4720115-4719790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):118, 5

               
               
               Conread position:48-378
               
               
               Cow position:chr12:23917010-23916687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):216, 5

               
               
               Conread position:48-383
               
               
               Cow position:chr12:12637013-12637348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):145, 16

               
               
               Conread position:48-383
               
               
               Cow position:chr12:15163333-15162989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):15, 141

               
               
               Conread position:48-384
               
               
               Cow position:chr12:37728302-37727979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):195, 79

               
               
               Conread position:49-220
               
               
               Cow position:chr12:46106960-46106792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):90, 24

               
               
               Conread position:49-228
               
               
               Cow position:chr12:17701865-17702035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):128, 15

               
               
               Conread position:49-323
               
               
               Cow position:chr12:37514109-37514384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:49-340
               
               
               Cow position:chr12:26749779-26750077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):98, 8

               
               
               Conread position:49-361
               
               
               Cow position:chr12:37008538-37008843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):215, 91

               
               
               Conread position:49-368
               
               
               Cow position:chr12:26217655-26217972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):209, 52

               
               
               Conread position:49-384
               
               
               Cow position:chr12:9143562-9143235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:49-384
               
               
               Cow position:chr12:11547215-11546868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 129

               
               
               Conread position:49-384
               
               
               Cow position:chr12:31948285-31947956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):8, 81

               
               
               Conread position:49-384
               
               
               Cow position:chr12:42967169-42966838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):18, 123

               
               
               Conread position:50-218
               
               
               Cow position:chr12:2835576-2835407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):86, 95

               
               
               Conread position:50-226
               
               
               Cow position:chr12:41684675-41684503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):121, 92

               
               
               Conread position:50-230
               
               
               Cow position:chr12:34878008-34877822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:50-238
               
               
               Cow position:chr12:29195467-29195279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 98

               
               
               Conread position:50-238
               
               
               Cow position:chr12:43551044-43551238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:50-243
               
               
               Cow position:chr12:31602651-31602843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:50-249
               
               
               Cow position:chr12:34532901-34533101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):97, 113

               
               
               Conread position:50-263
               
               
               Cow position:chr12:23714843-23714634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:50-274
               
               
               Cow position:chr12:6187939-6188167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):95, 23

               
               
               Conread position:50-302
               
               
               Cow position:chr12:5839490-5839738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):135, 42

               
               
               Conread position:50-331
               
               
               Cow position:chr12:11660099-11659816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):11, 152

               
               
               Conread position:50-331
               
               
               Cow position:chr12:38215856-38216148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:50-368
               
               
               Cow position:chr12:16670437-16670119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 41

               
               
               Conread position:50-375
               
               
               Cow position:chr12:34465847-34466159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):214, 77

               
               
               Conread position:50-378
               
               
               Cow position:chr12:15938099-15938422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):142, 42

               
               
               Conread position:50-379
               
               
               Cow position:chr12:12301097-12300764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):90, 7

               
               
               Conread position:50-380
               
               
               Cow position:chr12:24032658-24032343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 15

               
               
               Conread position:50-382
               
               
               Cow position:chr12:24023640-24023956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):206, 79

               
               
               Conread position:50-383
               
               
               Cow position:chr12:16605498-16605813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):112, 75

               
               
               Conread position:50-383
               
               
               Cow position:chr12:34161574-34161255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:50-384
               
               
               Cow position:chr12:20479173-20479487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):214, 44

               
               
               Conread position:50-384
               
               
               Cow position:chr12:25561537-25561210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 91

               
               
               Conread position:50-384
               
               
               Cow position:chr12:27802887-27803208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):214, 78

               
               
               Conread position:50-384
               
               
               Cow position:chr12:34473437-34473786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):89, 173

               
               
               Conread position:51-309
               
               
               Cow position:chr12:5554167-5554423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):229, 91

               
               
               Conread position:51-384
               
               
               Cow position:chr12:44920229-44919872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 119

               
               
               Conread position:52-228
               
               
               Cow position:chr12:17254309-17254135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):121, 13

               
               
               Conread position:52-283
               
               
               Cow position:chr12:4007915-4008148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):83, 13

               
               
               Conread position:52-290
               
               
               Cow position:chr12:43974460-43974226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:52-343
               
               
               Cow position:chr12:9766713-9767001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 12

               
               
               Conread position:52-348
               
               
               Cow position:chr12:7884512-7884808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 12

               
               
               Conread position:52-384
               
               
               Cow position:chr12:18518841-18518504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 94

               
               
               Conread position:52-384
               
               
               Cow position:chr12:42784475-42784145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):170, 12

               
               
               Conread position:52-404
               
               
               Cow position:chr12:15429428-15429777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 39

               
               
               Conread position:53-193
               
               
               Cow position:chr12:3579652-3579513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:53-244
               
               
               Cow position:chr12:38691749-38691943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):14, 135

               
               
               Conread position:53-249
               
               
               Cow position:chr12:3071783-3071589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):12, 44

               
               
               Conread position:53-257
               
               
               Cow position:chr12:6480815-6480605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:53-270
               
               
               Cow position:chr12:35469283-35469496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):211, 87

               
               
               Conread position:53-301
               
               
               Cow position:chr12:17252035-17252277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):211, 72

               
               
               Conread position:53-343
               
               
               Cow position:chr12:3371380-3371665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):212, 36

               
               
               Conread position:53-344
               
               
               Cow position:chr12:44202824-44203111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):11, 60

               
               
               Conread position:53-346
               
               
               Cow position:chr12:12530908-12531198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 124

               
               
               Conread position:53-346
               
               
               Cow position:chr12:14223150-14222852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 11

               
               
               Conread position:53-346
               
               
               Cow position:chr12:19261363-19261074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 112

               
               
               Conread position:53-361
               
               
               Cow position:chr12:30590937-30590628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):49, 66

               
               
               Conread position:53-368
               
               
               Cow position:chr12:19258444-19258133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 38

               
               
               Conread position:53-368
               
               
               Cow position:chr12:33298351-33298044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:53-377
               
               
               Cow position:chr12:34007467-34007152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 42

               
               
               Conread position:53-378
               
               
               Cow position:chr12:4596641-4596309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):74, 207

               
               
               Conread position:53-381
               
               
               Cow position:chr12:42180961-42181297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):211, 12

               
               
               Conread position:53-383
               
               
               Cow position:chr12:19508397-19508729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):213, 11

               
               
               Conread position:53-384
               
               
               Cow position:chr12:15703324-15703659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):13, 45

               
               
               Conread position:53-384
               
               
               Cow position:chr12:25917112-25917425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):213, 21

               
               
               Conread position:53-384
               
               
               Cow position:chr12:28131759-28131422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):91, 19

               
               
               Conread position:53-384
               
               
               Cow position:chr12:30806020-30805692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):20, 11

               
               
               Conread position:53-384
               
               
               Cow position:chr12:41658553-41658885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):58, 238

               
               
               Conread position:53-388
               
               
               Cow position:chr12:7960419-7960743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):193, 17

               
               
               Conread position:53-388
               
               
               Cow position:chr12:36790645-36790977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):118, 99

               
               
               Conread position:53-413
               
               
               Cow position:chr12:1998629-1998991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):11, 124

               
               
               Conread position:54-257
               
               
               Cow position:chr12:20355390-20355178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:54-366
               
               
               Cow position:chr12:30753887-30753579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):12, 26

               
               
               Conread position:54-368
               
               
               Cow position:chr12:23446883-23446576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):111, 53

               
               
               Conread position:54-378
               
               
               Cow position:chr12:20776762-20777079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 91

               
               
               Conread position:54-383
               
               
               Cow position:chr12:4162206-4162528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):96, 65

               
               
               Conread position:54-383
               
               
               Cow position:chr12:41084212-41083908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:54-384
               
               
               Cow position:chr12:30210637-30210320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):210, 73

               
               
               Conread position:55-253
               
               
               Cow position:chr12:44861091-44861291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:55-384
               
               
               Cow position:chr12:33129420-33129106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:56-238
               
               
               Cow position:chr12:19272525-19272705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:56-257
               
               
               Cow position:chr12:27430685-27430471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:56-332
               
               
               Cow position:chr12:6468909-6469173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):208, 18

               
               
               Conread position:56-332
               
               
               Cow position:chr12:35240938-35241213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 92

               
               
               Conread position:56-382
               
               
               Cow position:chr12:4769084-4768766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):207, 83

               
               
               Conread position:56-382
               
               
               Cow position:chr12:17031774-17031455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 70

               
               
               Conread position:56-384
               
               
               Cow position:chr12:18420756-18421085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):50, 119

               
               
               Conread position:56-384
               
               
               Cow position:chr12:19502249-19502578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):45, 242

               
               
               Conread position:56-384
               
               
               Cow position:chr12:36544479-36544811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 84

               
               
               Conread position:56-384
               
               
               Cow position:chr12:41159746-41159430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):79, 36

               
               
               Conread position:57-197
               
               
               Cow position:chr12:10611822-10611684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 89

               
               
               Conread position:57-209
               
               
               Cow position:chr12:44892373-44892220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):97, 119

               
               
               Conread position:57-231
               
               
               Cow position:chr12:43619447-43619271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 35

               
               
               Conread position:57-238
               
               
               Cow position:chr12:25528398-25528576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:57-238
               
               
               Cow position:chr12:38679212-38679033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:57-254
               
               
               Cow position:chr12:6666725-6666542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:57-256
               
               
               Cow position:chr12:2964210-2964016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:57-256
               
               
               Cow position:chr12:29180838-29180639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):177, 88

               
               
               Conread position:57-265
               
               
               Cow position:chr12:48578999-48578800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:57-268
               
               
               Cow position:chr12:43855054-43854847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):206, 84

               
               
               Conread position:57-270
               
               
               Cow position:chr12:14986911-14986701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:57-354
               
               
               Cow position:chr12:25804981-25805260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):207, 48

               
               
               Conread position:57-383
               
               
               Cow position:chr12:18123830-18123525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 82

               
               
               Conread position:57-384
               
               
               Cow position:chr12:30745880-30745554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 84

               
               
               Conread position:57-384
               
               
               Cow position:chr12:39486594-39486271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):9, 128

               
               
               Conread position:57-384
               
               
               Cow position:chr12:44622524-44622192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):81, 179

               
               
               Conread position:57-401
               
               
               Cow position:chr12:7902641-7902977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 83

               
               
               Conread position:58-234
               
               
               Cow position:chr12:45152455-45152280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:58-315
               
               
               Cow position:chr12:6688048-6687798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):26, 77

               
               
               Conread position:58-343
               
               
               Cow position:chr12:38126358-38126648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):81, 128

               
               
               Conread position:58-378
               
               
               Cow position:chr12:35770861-35771175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):206, 37

               
               
               Conread position:58-383
               
               
               Cow position:chr12:15038822-15039137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):201, 78

               
               
               Conread position:58-384
               
               
               Cow position:chr12:5714781-5714466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 62

               
               
               Conread position:58-384
               
               
               Cow position:chr12:11057029-11056718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):145, 34

               
               
               Conread position:59-235
               
               
               Cow position:chr12:27192204-27192377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 51

               
               
               Conread position:59-238
               
               
               Cow position:chr12:9866066-9866251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):67, 132

               
               
               Conread position:59-249
               
               
               Cow position:chr12:41989519-41989712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 136

               
               
               Conread position:59-251
               
               
               Cow position:chr12:38343713-38343520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):107, 122

               
               
               Conread position:59-255
               
               
               Cow position:chr12:16107565-16107364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):89, 129

               
               
               Conread position:59-285
               
               
               Cow position:chr12:45001909-45002131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):205, 43

               
               
               Conread position:59-312
               
               
               Cow position:chr12:27176800-27176544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):90, 51

               
               
               Conread position:59-334
               
               
               Cow position:chr12:16493193-16493472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 128

               
               
               Conread position:59-343
               
               
               Cow position:chr12:11700715-11701006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 33

               
               
               Conread position:59-352
               
               
               Cow position:chr12:4341573-4341869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):85, 237

               
               
               Conread position:59-352
               
               
               Cow position:chr12:10942456-10942155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):77, 132

               
               
               Conread position:59-362
               
               
               Cow position:chr12:18563324-18563008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):105, 67

               
               
               Conread position:59-366
               
               
               Cow position:chr12:9482140-9482445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):87, 113

               
               
               Conread position:59-376
               
               
               Cow position:chr12:11587931-11587619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):96, 35

               
               
               Conread position:59-378
               
               
               Cow position:chr12:34333278-34332957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):50, 134

               
               
               Conread position:59-382
               
               
               Cow position:chr12:17882017-17881702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 69

               
               
               Conread position:59-383
               
               
               Cow position:chr12:15089678-15089353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 140

               
               
               Conread position:59-384
               
               
               Cow position:chr12:17080428-17080098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):82, 94

               
               
               Conread position:59-384
               
               
               Cow position:chr12:42282677-42282996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):105, 79

               
               
               Conread position:59-384
               
               
               Cow position:chr12:42602075-42602399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):77, 131

               
               
               Conread position:60-213
               
               
               Cow position:chr12:18978847-18978696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):82, 31

               
               
               Conread position:60-213
               
               
               Cow position:chr12:40309473-40309328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:60-214
               
               
               Cow position:chr12:20637377-20637528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:60-249
               
               
               Cow position:chr12:37480676-37480862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):86, 111

               
               
               Conread position:60-260
               
               
               Cow position:chr12:29316301-29316501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):98, 51

               
               
               Conread position:60-268
               
               
               Cow position:chr12:24437471-24437682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:60-268
               
               
               Cow position:chr12:29057551-29057342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):111, 124

               
               
               Conread position:60-271
               
               
               Cow position:chr12:2734750-2734958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):204, 81

               
               
               Conread position:60-282
               
               
               Cow position:chr12:46463890-46464128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 132

               
               
               Conread position:60-287
               
               
               Cow position:chr12:36261855-36261623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:60-295
               
               
               Cow position:chr12:45092601-45092371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:60-297
               
               
               Cow position:chr12:31883507-31883265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 159

               
               
               Conread position:60-318
               
               
               Cow position:chr12:40200857-40200607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):105, 35

               
               
               Conread position:60-330
               
               
               Cow position:chr12:42286125-42285860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):112, 52

               
               
               Conread position:60-332
               
               
               Cow position:chr12:18582838-18583103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):204, 31

               
               
               Conread position:60-378
               
               
               Cow position:chr12:10895393-10895704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):87, 23

               
               
               Conread position:60-378
               
               
               Cow position:chr12:29899259-29899585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):89, 127

               
               
               Conread position:60-384
               
               
               Cow position:chr12:5459411-5459101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):77, 9

               
               
               Conread position:60-384
               
               
               Cow position:chr12:6410575-6410894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 40

               
               
               Conread position:60-384
               
               
               Cow position:chr12:8759493-8759158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:60-384
               
               
               Cow position:chr12:15103438-15103102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:60-384
               
               
               Cow position:chr12:17879144-17879465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 85

               
               
               Conread position:60-384
               
               
               Cow position:chr12:39465726-39465420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):204, 67

               
               
               Conread position:61-232
               
               
               Cow position:chr12:4014262-4014443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:61-245
               
               
               Cow position:chr12:3057249-3057064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:61-247
               
               
               Cow position:chr12:4512291-4512475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:61-267
               
               
               Cow position:chr12:24166789-24166990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):203, 83

               
               
               Conread position:61-274
               
               
               Cow position:chr12:45039267-45039054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):178, 80

               
               
               Conread position:61-303
               
               
               Cow position:chr12:18513766-18514009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):75, 92

               
               
               Conread position:61-384
               
               
               Cow position:chr12:6242015-6242338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):97, 65

               
               
               Conread position:61-384
               
               
               Cow position:chr12:18577987-18577684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):131, 67

               
               
               Conread position:61-384
               
               
               Cow position:chr12:31228743-31228412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):83, 125

               
               
               Conread position:62-247
               
               
               Cow position:chr12:6915386-6915199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):85, 125

               
               
               Conread position:62-249
               
               
               Cow position:chr12:26357208-26357398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:62-345
               
               
               Cow position:chr12:13643394-13643110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):85, 115

               
               
               Conread position:62-384
               
               
               Cow position:chr12:17001400-17001100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):202, 63

               
               
               Conread position:63-308
               
               
               Cow position:chr12:33949058-33948816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):201, 26

               
               
               Conread position:64-268
               
               
               Cow position:chr12:26147011-26147217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:64-271
               
               
               Cow position:chr12:25814314-25814097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:64-297
               
               
               Cow position:chr12:40157871-40158098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):200, 63

               
               
               Conread position:64-369
               
               
               Cow position:chr12:26576049-26575738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:226
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):200, 64

               
               
               Conread position:64-383
               
               
               Cow position:chr12:42163199-42162877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):42, 90

               
               
               Conread position:64-384
               
               
               Cow position:chr12:5635295-5635609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 90

               
               
               Conread position:64-384
               
               
               Cow position:chr12:15414714-15415035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):101, 16

               
               
               Conread position:64-384
               
               
               Cow position:chr12:32169703-32169378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 43

               
               
               Conread position:64-384
               
               
               Cow position:chr12:33851513-33851197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 75

               
               
               Conread position:66-384
               
               
               Cow position:chr12:35669317-35669635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):133, 25

               
               
               Conread position:68-273
               
               
               Cow position:chr12:24181296-24181098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:68-331
               
               
               Cow position:chr12:23939372-23939114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 61

               
               
               Conread position:68-344
               
               
               Cow position:chr12:48415367-48415637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):196, 27

               
               
               Conread position:68-368
               
               
               Cow position:chr12:24116220-24116510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 58

               
               
               Conread position:68-378
               
               
               Cow position:chr12:3623844-3623538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):196, 71

               
               
               Conread position:68-383
               
               
               Cow position:chr12:22485966-22485652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):44, 181

               
               
               Conread position:68-384
               
               
               Cow position:chr12:18021031-18020696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):69, 171

               
               
               Conread position:69-309
               
               
               Cow position:chr12:26777042-26777279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):197, 63

               
               
               Conread position:71-367
               
               
               Cow position:chr12:45363512-45363219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):83, 59

               
               
               Conread position:71-368
               
               
               Cow position:chr12:19400666-19400956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):189, 103

               
               
               Conread position:72-255
               
               
               Cow position:chr12:6465376-6465543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:72-330
               
               
               Cow position:chr12:4510090-4510350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 104

               
               
               Conread position:72-373
               
               
               Cow position:chr12:3371705-3372009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 78

               
               
               Conread position:72-378
               
               
               Cow position:chr12:25809583-25809267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:72-379
               
               
               Cow position:chr12:23574919-23574612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 222

               
               
               Conread position:72-383
               
               
               Cow position:chr12:22515589-22515898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):179, 56

               
               
               Conread position:72-383
               
               
               Cow position:chr12:37993573-37993883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 33

               
               
               Conread position:72-384
               
               
               Cow position:chr12:15122474-15122158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 80

               
               
               Conread position:72-384
               
               
               Cow position:chr12:31532260-31532570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):192, 19

               
               
               Conread position:72-384
               
               
               Cow position:chr12:42879848-42879533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 98

               
               
               Conread position:73-332
               
               
               Cow position:chr12:28790205-28789934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):71, 89

               
               
               Conread position:73-333
               
               
               Cow position:chr12:17270685-17270421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):70, 114

               
               
               Conread position:74-343
               
               
               Cow position:chr12:31517036-31517294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):190, 54

               
               
               Conread position:74-347
               
               
               Cow position:chr12:16056708-16056985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):70, 116

               
               
               Conread position:76-320
               
               
               Cow position:chr12:24043011-24043266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):70, 167

               
               
               Conread position:79-343
               
               
               Cow position:chr12:42953755-42954022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 107

               
               
               Conread position:79-375
               
               
               Cow position:chr12:17269943-17269646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 67

               
               
               Conread position:79-378
               
               
               Cow position:chr12:41091677-41091380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:82-380
               
               
               Cow position:chr12:5631745-5632034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):182, 28

               
               
               Conread position:83-384
               
               
               Cow position:chr12:28749082-28748775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 74

               
               
               Conread position:85-384
               
               
               Cow position:chr12:35124029-35123730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):6, 145

               
               
               Conread position:86-384
               
               
               Cow position:chr12:37771001-37770714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 19

               
               
               Conread position:87-378
               
               
               Cow position:chr12:7299327-7299617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:90-368
               
               
               Cow position:chr12:20636019-20636302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):64, 85

               
               
               Conread position:92-378
               
               
               Cow position:chr12:4866943-4866666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):172, 33

               
               
               Conread position:92-378
               
               
               Cow position:chr12:30661820-30662103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):60, 34

               
               
               Conread position:95-382
               
               
               Cow position:chr12:4008154-4008437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):44, 184

               
               
               Conread position:95-384
               
               
               Cow position:chr12:43942598-43942315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):130, 70

               
               
               Conread position:95-384
               
               
               Cow position:chr12:45965139-45965414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:98-386
               
               
               Cow position:chr12:33323371-33323659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):67, 188

               
               
               Conread position:99-373
               
               
               Cow position:chr12:42254791-42254516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):57, 159

               
               
               Conread position:107-282
               
               
               Cow position:chr12:27357495-27357327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):157, 6

               
               
               Conread position:128-282
               
               
               Cow position:chr12:26151368-26151521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):136, 33

               
               
               Conread position:128-383
               
               
               Cow position:chr12:32715138-32714883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):136, 88

               
               
               Conread position:128-384
               
               
               Cow position:chr12:17774882-17774636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):136, 14

               
               
               Conread position:128-384
               
               
               Cow position:chr12:25321008-25320760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:128-384
               
               
               Cow position:chr12:27037356-27037607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):136, 219

               
               
               Conread position:128-384
               
               
               Cow position:chr12:45820274-45820521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):136, 19

               
               
               Conread position:129-282
               
               
               Cow position:chr12:15260852-15260702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):135, 16

               
               
               Conread position:129-334
               
               
               Cow position:chr12:16341984-16341780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):130, 53

               
               
               Conread position:129-376
               
               
               Cow position:chr12:38184687-38184443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 58

               
               
               Conread position:129-377
               
               
               Cow position:chr12:7882388-7882138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 59

               
               
               Conread position:129-378
               
               
               Cow position:chr12:3950253-3950501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):134, 22

               
               
               Conread position:129-378
               
               
               Cow position:chr12:22882148-22881897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):134, 32

               
               
               Conread position:129-384
               
               
               Cow position:chr12:6485121-6485369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):135, 24

               
               
               Conread position:129-384
               
               
               Cow position:chr12:31959970-31959731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:131-272
               
               
               Cow position:chr12:6139488-6139631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 48

               
               
               Conread position:131-328
               
               
               Cow position:chr12:33319577-33319774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):134, 146

               
               
               Conread position:131-366
               
               
               Cow position:chr12:18765882-18766122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:131-371
               
               
               Cow position:chr12:34165671-34165438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:131-378
               
               
               Cow position:chr12:46120740-46120986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):24, 157

               
               
               Conread position:131-383
               
               
               Cow position:chr12:7000514-7000766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):133, 56

               
               
               Conread position:131-384
               
               
               Cow position:chr12:2813319-2813064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):6, 206

               
               
               Conread position:131-384
               
               
               Cow position:chr12:5801134-5800872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 126

               
               
               Conread position:131-384
               
               
               Cow position:chr12:6720416-6720161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):102, 16

               
               
               Conread position:131-384
               
               
               Cow position:chr12:25445004-25444762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-384
               
               
               Cow position:chr12:29770488-29770735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):135, 88

               
               
               Conread position:132-355
               
               
               Cow position:chr12:44733005-44733224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):119, 5

               
               
               Conread position:132-384
               
               
               Cow position:chr12:29969670-29969418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):22, 153

               
               
               Conread position:132-386
               
               
               Cow position:chr12:15531145-15530894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 62

               
               
               Conread position:132-397
               
               
               Cow position:chr12:23798189-23797925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:133-345
               
               
               Cow position:chr12:24222434-24222641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):113, 28

               
               
               Conread position:133-391
               
               
               Cow position:chr12:22540296-22540036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 38

               
               
               Conread position:134-382
               
               
               Cow position:chr12:44517652-44517896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):130, 25

               
               
               Conread position:134-384
               
               
               Cow position:chr12:6210071-6210319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):36, 17

               
               
               Conread position:135-262
               
               
               Cow position:chr12:27572153-27572280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:135-282
               
               
               Cow position:chr12:19274313-19274458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):136, 16

               
               
               Conread position:135-382
               
               
               Cow position:chr12:26222900-26223143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 121

               
               
               Conread position:135-384
               
               
               Cow position:chr12:5906142-5905893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):129, 16

               
               
               Conread position:137-349
               
               
               Cow position:chr12:30605081-30605292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):127, 64

               
               
               Conread position:137-384
               
               
               Cow position:chr12:25177515-25177745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):127, 15

               
               
               Conread position:138-384
               
               
               Cow position:chr12:5940426-5940185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 140

               
               
               Conread position:146-368
               
               
               Cow position:chr12:18943582-18943804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):118, 139

               
               
               Conread position:147-303
               
               
               Cow position:chr12:23644728-23644886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:147-383
               
               
               Cow position:chr12:19691159-19691395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):119, 72

               
               
               Conread position:147-384
               
               
               Cow position:chr12:9914864-9914625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):107, 116

               
               
               Conread position:147-384
               
               
               Cow position:chr12:19507711-19507470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):117, 9

               
               
               Conread position:147-384
               
               
               Cow position:chr12:30803288-30803053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):143, 28

               
               
               Conread position:147-384
               
               
               Cow position:chr12:37732705-37732945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:147-384
               
               
               Cow position:chr12:47804231-47803993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:147-387
               
               
               Cow position:chr12:41215810-41216049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):117, 86

               
               
               Conread position:148-384
               
               
               Cow position:chr12:28213583-28213356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):116, 53

               
               
               Conread position:148-384
               
               
               Cow position:chr12:30438311-30438083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):115, 68

               
               
               Conread position:152-384
               
               
               Cow position:chr12:30170738-30170506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:153-316
               
               
               Cow position:chr12:30819313-30819147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:153-384
               
               
               Cow position:chr12:6488924-6489146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):117, 70

               
               
               Conread position:153-384
               
               
               Cow position:chr12:19869529-19869307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):112, 12

               
               
               Conread position:155-289
               
               
               Cow position:chr12:15641040-15641177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:155-378
               
               
               Cow position:chr12:42174483-42174264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 72

               
               
               Conread position:155-383
               
               
               Cow position:chr12:31429504-31429731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):107, 88

               
               
               Conread position:155-384
               
               
               Cow position:chr12:33458214-33457983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):107, 87

               
               
               Conread position:161-383
               
               
               Cow position:chr12:8868821-8869038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):104, 56

               
               
               Conread position:161-384
               
               
               Cow position:chr12:35378262-35378041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:162-348
               
               
               Cow position:chr12:3092520-3092699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):102, 120

               
               
               Conread position:163-384
               
               
               Cow position:chr12:18963870-18964089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):107, 5

               
               
               Conread position:174-329
               
               
               Cow position:chr12:6235337-6235176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:174-368
               
               
               Cow position:chr12:25452399-25452593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):88, 111

               
               
               Conread position:179-350
               
               
               Cow position:chr12:18023382-18023561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):85, 158

               
               
               Conread position:179-378
               
               
               Cow position:chr12:23855879-23855681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):91, 43

               
               
               Conread position:180-384
               
               
               Cow position:chr12:3906515-3906310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 57

               
               
               Conread position:180-384
               
               
               Cow position:chr12:19664490-19664693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):84, 93

               
               
               Conread position:180-384
               
               
               Cow position:chr12:34673298-34673502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):84, 133

               
               
               Conread position:181-377
               
               
               Cow position:chr12:5658035-5658224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 97

               
               
               Conread position:185-384
               
               
               Cow position:chr12:9894819-9894620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):74, 110

               
               
               Conread position:186-352
               
               
               Cow position:chr12:3056168-3056002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):74, 22

               
               
               Conread position:187-381
               
               
               Cow position:chr12:18550916-18550723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 129

               
               
               Conread position:187-383
               
               
               Cow position:chr12:18420504-18420309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):77, 5

               
               
               Conread position:187-384
               
               
               Cow position:chr12:28471682-28471476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):21, 106

               
               
               Conread position:190-384
               
               
               Cow position:chr12:730904-731099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:190-384
               
               
               Cow position:chr12:28582476-28582666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):74, 43

               
               
               Conread position:195-384
               
               
               Cow position:chr12:20326801-20326612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):56, 92

               
               
               Conread position:196-377
               
               
               Cow position:chr12:40028728-40028912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:196-384
               
               
               Cow position:chr12:38454932-38454755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):68, 17

               
               
               Conread position:206-382
               
               
               Cow position:chr12:26317481-26317303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):58, 162

               
               
               Conread position:207-384
               
               
               Cow position:chr12:6164007-6164187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:211-384
               
               
               Cow position:chr12:29921774-29921944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):53, 74

               
               
               Conread position:220-384
               
               
               Cow position:chr12:3579288-3579122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):45, 32

               
               
               Conread position:1-240
               
               
               Cow position:chr13:39376240-39376486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 244

               
               
               Conread position:1-272
               
               
               Cow position:chr13:47676206-47675937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):163, 28

               
               
               Conread position:1-295
               
               
               Cow position:chr13:28071608-28071895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):65, 19

               
               
               Conread position:1-344
               
               
               Cow position:chr13:6860908-6861251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):138, 50

               
               
               Conread position:1-368
               
               
               Cow position:chr13:16203394-16203762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 29

               
               
               Conread position:1-376
               
               
               Cow position:chr13:28689206-28689565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):26, 64

               
               
               Conread position:2-384
               
               
               Cow position:chr13:17021990-17021620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 49

               
               
               Conread position:2-384
               
               
               Cow position:chr13:17744993-17745348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 48

               
               
               Conread position:2-390
               
               
               Cow position:chr13:44003427-44003829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:270
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:3-384
               
               
               Cow position:chr13:19188049-19188410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):164, 23

               
               
               Conread position:4-325
               
               
               Cow position:chr13:52641217-52640900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):142, 48

               
               
               Conread position:6-258
               
               
               Cow position:chr13:17223057-17223307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):142, 19

               
               
               Conread position:7-205
               
               
               Cow position:chr13:41474618-41474802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:8-242
               
               
               Cow position:chr13:52249307-52249081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:8-384
               
               
               Cow position:chr13:14967480-14967106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):56, 28

               
               
               Conread position:10-270
               
               
               Cow position:chr13:16907948-16908213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):44, 12

               
               
               Conread position:11-265
               
               
               Cow position:chr13:57770244-57769999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:11-343
               
               
               Cow position:chr13:31808270-31808585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):14, 21

               
               
               Conread position:12-384
               
               
               Cow position:chr13:17821521-17821159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 136

               
               
               Conread position:15-384
               
               
               Cow position:chr13:13238326-13238686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:17-230
               
               
               Cow position:chr13:37946638-37946434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:18-379
               
               
               Cow position:chr13:20880078-20879729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:19-263
               
               
               Cow position:chr13:13283084-13283335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:19-274
               
               
               Cow position:chr13:37614448-37614190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:19-384
               
               
               Cow position:chr13:42113763-42114130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):23, 6

               
               
               Conread position:20-216
               
               
               Cow position:chr13:17044376-17044570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):137, 31

               
               
               Conread position:20-343
               
               
               Cow position:chr13:17563484-17563804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 58

               
               
               Conread position:20-345
               
               
               Cow position:chr13:15756865-15757190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):140, 37

               
               
               Conread position:20-377
               
               
               Cow position:chr13:18973698-18973340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):134, 51

               
               
               Conread position:23-273
               
               
               Cow position:chr13:49393195-49392944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):133, 25

               
               
               Conread position:24-201
               
               
               Cow position:chr13:62304318-62304497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):5, 14

               
               
               Conread position:24-378
               
               
               Cow position:chr13:39233075-39232732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):222, 40

               
               
               Conread position:25-348
               
               
               Cow position:chr13:13471668-13471337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 41

               
               
               Conread position:26-252
               
               
               Cow position:chr13:24160199-24160429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 153

               
               
               Conread position:26-260
               
               
               Cow position:chr13:51249622-51249395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:26-384
               
               
               Cow position:chr13:5060490-5060854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 119

               
               
               Conread position:26-384
               
               
               Cow position:chr13:21280743-21280378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:252
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):121, 25

               
               
               Conread position:26-384
               
               
               Cow position:chr13:33875427-33875773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):128, 30

               
               
               Conread position:26-384
               
               
               Cow position:chr13:47964414-47964088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):238, 38

               
               
               Conread position:26-384
               
               
               Cow position:chr13:60340554-60340919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):12, 134

               
               
               Conread position:27-225
               
               
               Cow position:chr13:6951330-6951529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):31, 68

               
               
               Conread position:27-348
               
               
               Cow position:chr13:21170286-21170603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 20

               
               
               Conread position:28-238
               
               
               Cow position:chr13:13797062-13796848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 38

               
               
               Conread position:28-252
               
               
               Cow position:chr13:50646872-50646654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:28-255
               
               
               Cow position:chr13:50457614-50457838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):118, 23

               
               
               Conread position:28-344
               
               
               Cow position:chr13:55161966-55162280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):102, 25

               
               
               Conread position:28-366
               
               
               Cow position:chr13:13533906-13533579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):137, 29

               
               
               Conread position:28-368
               
               
               Cow position:chr13:18999289-18999631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):119, 23

               
               
               Conread position:28-378
               
               
               Cow position:chr13:25579433-25579086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:244
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):101, 25

               
               
               Conread position:28-384
               
               
               Cow position:chr13:7075994-7076366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):32, 238

               
               
               Conread position:29-229
               
               
               Cow position:chr13:28605640-28605437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):31, 159

               
               
               Conread position:29-244
               
               
               Cow position:chr13:37344550-37344767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:29-252
               
               
               Cow position:chr13:22122465-22122689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):125, 147

               
               
               Conread position:29-262
               
               
               Cow position:chr13:53850580-53850811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:178
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):118, 24

               
               
               Conread position:29-328
               
               
               Cow position:chr13:21313922-21313620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 123

               
               
               Conread position:29-354
               
               
               Cow position:chr13:8425208-8425533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):125, 246

               
               
               Conread position:29-378
               
               
               Cow position:chr13:15041714-15041371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:30-253
               
               
               Cow position:chr13:46350148-46349928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:30-282
               
               
               Cow position:chr13:14927016-14927268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):49, 27

               
               
               Conread position:30-358
               
               
               Cow position:chr13:4974906-4974579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):109, 23

               
               
               Conread position:30-367
               
               
               Cow position:chr13:45352788-45353135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):114, 19

               
               
               Conread position:30-378
               
               
               Cow position:chr13:52893904-52894244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):10, 36

               
               
               Conread position:30-384
               
               
               Cow position:chr13:38329377-38329735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 19

               
               
               Conread position:30-410
               
               
               Cow position:chr13:17977099-17977476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:260
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):98, 163

               
               
               Conread position:31-207
               
               
               Cow position:chr13:25924465-25924290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):52, 109

               
               
               Conread position:31-272
               
               
               Cow position:chr13:17813231-17813469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):233, 26

               
               
               Conread position:31-272
               
               
               Cow position:chr13:48222792-48222550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:31-282
               
               
               Cow position:chr13:3209565-3209313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):63, 97

               
               
               Conread position:31-348
               
               
               Cow position:chr13:39939807-39939494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):231, 34

               
               
               Conread position:31-352
               
               
               Cow position:chr13:14879195-14878874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):157, 22

               
               
               Conread position:31-361
               
               
               Cow position:chr13:6889497-6889838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):113, 47

               
               
               Conread position:31-368
               
               
               Cow position:chr13:10925163-10924820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):113, 22

               
               
               Conread position:31-378
               
               
               Cow position:chr13:34375017-34375370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):53, 148

               
               
               Conread position:31-378
               
               
               Cow position:chr13:54128841-54128491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 82

               
               
               Conread position:31-383
               
               
               Cow position:chr13:17497982-17498325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):226, 19

               
               
               Conread position:32-209
               
               
               Cow position:chr13:4135637-4135817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 118

               
               
               Conread position:32-220
               
               
               Cow position:chr13:38683266-38683071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:32-238
               
               
               Cow position:chr13:23685243-23685036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):114, 25

               
               
               Conread position:32-240
               
               
               Cow position:chr13:10511946-10511736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):119, 21

               
               
               Conread position:32-256
               
               
               Cow position:chr13:52011090-52010859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 202

               
               
               Conread position:32-273
               
               
               Cow position:chr13:33868178-33868418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):154, 18

               
               
               Conread position:32-316
               
               
               Cow position:chr13:28440768-28440494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):96, 11

               
               
               Conread position:32-368
               
               
               Cow position:chr13:7059221-7059561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):114, 18

               
               
               Conread position:32-381
               
               
               Cow position:chr13:43479821-43480163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 39

               
               
               Conread position:32-383
               
               
               Cow position:chr13:151729-152062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:247
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:32-383
               
               
               Cow position:chr13:21288323-21287979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 17

               
               
               Conread position:32-384
               
               
               Cow position:chr13:13260746-13261113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 203

               
               
               Conread position:33-238
               
               
               Cow position:chr13:53357595-53357796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):123, 15

               
               
               Conread position:33-255
               
               
               Cow position:chr13:3594091-3594300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:33-255
               
               
               Cow position:chr13:37555112-37554894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):28, 101

               
               
               Conread position:33-260
               
               
               Cow position:chr13:8637452-8637683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:33-272
               
               
               Cow position:chr13:15996797-15997032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):231, 31

               
               
               Conread position:33-293
               
               
               Cow position:chr13:4416872-4417129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):136, 16

               
               
               Conread position:33-339
               
               
               Cow position:chr13:18127847-18127543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):155, 31

               
               
               Conread position:33-366
               
               
               Cow position:chr13:52477886-52477555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 104

               
               
               Conread position:33-368
               
               
               Cow position:chr13:56035097-56034766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 109

               
               
               Conread position:33-383
               
               
               Cow position:chr13:17292370-17292025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 114

               
               
               Conread position:33-384
               
               
               Cow position:chr13:13954642-13954279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):31, 130

               
               
               Conread position:33-384
               
               
               Cow position:chr13:20509487-20509841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):76, 148

               
               
               Conread position:33-384
               
               
               Cow position:chr13:27550495-27550848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):104, 119

               
               
               Conread position:33-394
               
               
               Cow position:chr13:20473916-20473564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 95

               
               
               Conread position:34-282
               
               
               Cow position:chr13:15083428-15083667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):106, 23

               
               
               Conread position:34-326
               
               
               Cow position:chr13:43183006-43183299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):103, 30

               
               
               Conread position:34-327
               
               
               Cow position:chr13:26721031-26720732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):52, 30

               
               
               Conread position:34-384
               
               
               Cow position:chr13:9846701-9846345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):112, 29

               
               
               Conread position:34-384
               
               
               Cow position:chr13:23667020-23667364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 16

               
               
               Conread position:34-384
               
               
               Cow position:chr13:30798471-30798832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):86, 275

               
               
               Conread position:35-234
               
               
               Cow position:chr13:5930551-5930349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:35-252
               
               
               Cow position:chr13:37405481-37405688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:35-332
               
               
               Cow position:chr13:17823184-17822894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):151, 14

               
               
               Conread position:35-332
               
               
               Cow position:chr13:18299161-18299461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):111, 19

               
               
               Conread position:35-343
               
               
               Cow position:chr13:12045582-12045267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):114, 18

               
               
               Conread position:35-383
               
               
               Cow position:chr13:17855130-17855478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):119, 29

               
               
               Conread position:36-242
               
               
               Cow position:chr13:4968788-4968581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 28

               
               
               Conread position:36-252
               
               
               Cow position:chr13:17845249-17845465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):111, 17

               
               
               Conread position:36-264
               
               
               Cow position:chr13:11565602-11565825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:36-332
               
               
               Cow position:chr13:26726846-26726547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):83, 21

               
               
               Conread position:36-384
               
               
               Cow position:chr13:20358122-20357784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):120, 28

               
               
               Conread position:37-230
               
               
               Cow position:chr13:40483215-40483026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:37-237
               
               
               Cow position:chr13:6865904-6865703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):15, 112

               
               
               Conread position:37-270
               
               
               Cow position:chr13:33601468-33601237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 87

               
               
               Conread position:37-297
               
               
               Cow position:chr13:41157154-41157430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):20, 163

               
               
               Conread position:37-328
               
               
               Cow position:chr13:8194861-8195146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):112, 27

               
               
               Conread position:37-348
               
               
               Cow position:chr13:40490980-40491286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 80

               
               
               Conread position:37-352
               
               
               Cow position:chr13:46111731-46112043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:37-373
               
               
               Cow position:chr13:61188293-61188628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):125, 27

               
               
               Conread position:37-378
               
               
               Cow position:chr13:12876211-12875870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):117, 27

               
               
               Conread position:37-384
               
               
               Cow position:chr13:1363451-1363803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:37-384
               
               
               Cow position:chr13:6079640-6079310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):27, 91

               
               
               Conread position:37-387
               
               
               Cow position:chr13:6848689-6849042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 27

               
               
               Conread position:38-298
               
               
               Cow position:chr13:56535233-56535480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):226, 19

               
               
               Conread position:38-332
               
               
               Cow position:chr13:62007869-62008169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):17, 112

               
               
               Conread position:38-366
               
               
               Cow position:chr13:52283675-52284005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):114, 26

               
               
               Conread position:38-367
               
               
               Cow position:chr13:57228582-57228264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:38-378
               
               
               Cow position:chr13:46329840-46329501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 50

               
               
               Conread position:38-384
               
               
               Cow position:chr13:54701947-54702296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 19

               
               
               Conread position:39-309
               
               
               Cow position:chr13:40541340-40541072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:39-328
               
               
               Cow position:chr13:17089751-17089470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):10, 73

               
               
               Conread position:39-372
               
               
               Cow position:chr13:7998125-7998445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):202, 14

               
               
               Conread position:39-384
               
               
               Cow position:chr13:14543902-14544227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):64, 14

               
               
               Conread position:39-384
               
               
               Cow position:chr13:17450860-17451203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:39-384
               
               
               Cow position:chr13:17971277-17970919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):85, 172

               
               
               Conread position:39-384
               
               
               Cow position:chr13:20088955-20088594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 150

               
               
               Conread position:40-325
               
               
               Cow position:chr13:17611785-17611500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 103

               
               
               Conread position:40-345
               
               
               Cow position:chr13:42672660-42672352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):97, 13

               
               
               Conread position:40-374
               
               
               Cow position:chr13:36876835-36877150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):222, 22

               
               
               Conread position:40-384
               
               
               Cow position:chr13:1155941-1155599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):33, 200

               
               
               Conread position:41-220
               
               
               Cow position:chr13:23795610-23795443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:41-272
               
               
               Cow position:chr13:13775482-13775245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):103, 11

               
               
               Conread position:41-384
               
               
               Cow position:chr13:14575985-14576315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 12

               
               
               Conread position:41-384
               
               
               Cow position:chr13:45023455-45023103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 192

               
               
               Conread position:42-183
               
               
               Cow position:chr13:30809606-30809465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):101, 110

               
               
               Conread position:42-384
               
               
               Cow position:chr13:21235900-21235578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 88

               
               
               Conread position:43-382
               
               
               Cow position:chr13:972127-971786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 103

               
               
               Conread position:43-385
               
               
               Cow position:chr13:9587819-9587477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 147

               
               
               Conread position:44-348
               
               
               Cow position:chr13:19610794-19610492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:44-384
               
               
               Cow position:chr13:5263510-5263180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):15, 98

               
               
               Conread position:44-384
               
               
               Cow position:chr13:20288109-20288439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 101

               
               
               Conread position:45-378
               
               
               Cow position:chr13:8362977-8362654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):21, 177

               
               
               Conread position:45-383
               
               
               Cow position:chr13:19033327-19033662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):104, 141

               
               
               Conread position:45-384
               
               
               Cow position:chr13:49503766-49503422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:45-384
               
               
               Cow position:chr13:54389251-54388910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:46-229
               
               
               Cow position:chr13:23399538-23399720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):18, 100

               
               
               Conread position:46-378
               
               
               Cow position:chr13:28552361-28552696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):81, 7

               
               
               Conread position:46-384
               
               
               Cow position:chr13:11808347-11808667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):31, 102

               
               
               Conread position:46-384
               
               
               Cow position:chr13:60509352-60509010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):34, 132

               
               
               Conread position:47-331
               
               
               Cow position:chr13:12423177-12423463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):89, 17

               
               
               Conread position:47-343
               
               
               Cow position:chr13:10220732-10221019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:47-384
               
               
               Cow position:chr13:2803261-2803578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):217, 10

               
               
               Conread position:47-384
               
               
               Cow position:chr13:12282612-12282943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):206, 6

               
               
               Conread position:47-384
               
               
               Cow position:chr13:16247417-16247767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):13, 6

               
               
               Conread position:47-384
               
               
               Cow position:chr13:21275630-21275964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 60

               
               
               Conread position:48-234
               
               
               Cow position:chr13:21426044-21425871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:48-274
               
               
               Cow position:chr13:37621599-37621360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):74, 9

               
               
               Conread position:48-378
               
               
               Cow position:chr13:4158435-4158766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 17

               
               
               Conread position:48-380
               
               
               Cow position:chr13:12974591-12974907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):51, 5

               
               
               Conread position:48-384
               
               
               Cow position:chr13:2822643-2822968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):102, 16

               
               
               Conread position:48-384
               
               
               Cow position:chr13:23961031-23960704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 5

               
               
               Conread position:48-392
               
               
               Cow position:chr13:13338634-13338976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):119, 17

               
               
               Conread position:49-288
               
               
               Cow position:chr13:9707971-9707735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):52, 93

               
               
               Conread position:49-295
               
               
               Cow position:chr13:15993159-15993405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):78, 129

               
               
               Conread position:49-302
               
               
               Cow position:chr13:45439308-45439553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):215, 95

               
               
               Conread position:49-327
               
               
               Cow position:chr13:16020636-16020904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):215, 8

               
               
               Conread position:49-332
               
               
               Cow position:chr13:18197831-18197550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 21

               
               
               Conread position:49-364
               
               
               Cow position:chr13:30258624-30258937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):42, 141

               
               
               Conread position:49-380
               
               
               Cow position:chr13:7265331-7265020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):15, 74

               
               
               Conread position:50-220
               
               
               Cow position:chr13:23478676-23478847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:50-220
               
               
               Cow position:chr13:43342344-43342513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:50-224
               
               
               Cow position:chr13:20520087-20520264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):96, 138

               
               
               Conread position:50-230
               
               
               Cow position:chr13:19222450-19222628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):116, 14

               
               
               Conread position:50-233
               
               
               Cow position:chr13:57322926-57323104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):104, 78

               
               
               Conread position:50-241
               
               
               Cow position:chr13:10757916-10758094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):14, 72

               
               
               Conread position:50-242
               
               
               Cow position:chr13:23805244-23805050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:50-247
               
               
               Cow position:chr13:28500290-28500092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):93, 136

               
               
               Conread position:50-249
               
               
               Cow position:chr13:42302264-42302066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:50-255
               
               
               Cow position:chr13:26709626-26709834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:50-255
               
               
               Cow position:chr13:31507665-31507464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):47, 92

               
               
               Conread position:50-255
               
               
               Cow position:chr13:49356272-49356069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):115, 88

               
               
               Conread position:50-257
               
               
               Cow position:chr13:22601909-22601713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:50-282
               
               
               Cow position:chr13:1462515-1462289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):214, 50

               
               
               Conread position:50-289
               
               
               Cow position:chr13:21981192-21980961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):214, 14

               
               
               Conread position:50-290
               
               
               Cow position:chr13:21866856-21866611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 46

               
               
               Conread position:50-291
               
               
               Cow position:chr13:24796660-24796889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):228, 41

               
               
               Conread position:50-318
               
               
               Cow position:chr13:34873361-34873633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 141

               
               
               Conread position:50-331
               
               
               Cow position:chr13:19427412-19427696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):116, 14

               
               
               Conread position:50-332
               
               
               Cow position:chr13:20534677-20534952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):214, 36

               
               
               Conread position:50-339
               
               
               Cow position:chr13:20314848-20314555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 103

               
               
               Conread position:50-344
               
               
               Cow position:chr13:13320574-13320863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 96

               
               
               Conread position:50-366
               
               
               Cow position:chr13:20137591-20137915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):14, 116

               
               
               Conread position:50-373
               
               
               Cow position:chr13:21127563-21127246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):96, 23

               
               
               Conread position:50-377
               
               
               Cow position:chr13:19364021-19364345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 44

               
               
               Conread position:50-377
               
               
               Cow position:chr13:20271456-20271127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:50-378
               
               
               Cow position:chr13:620471-620158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):149, 94

               
               
               Conread position:50-383
               
               
               Cow position:chr13:17569320-17568992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 46

               
               
               Conread position:50-383
               
               
               Cow position:chr13:18846172-18846508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):100, 180

               
               
               Conread position:50-384
               
               
               Cow position:chr13:866908-867236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):114, 66

               
               
               Conread position:50-384
               
               
               Cow position:chr13:1231420-1231756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):116, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr13:5279431-5279076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):23, 141

               
               
               Conread position:50-384
               
               
               Cow position:chr13:12449205-12448883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):9, 43

               
               
               Conread position:50-384
               
               
               Cow position:chr13:15194944-15194623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 72

               
               
               Conread position:50-384
               
               
               Cow position:chr13:15868886-15869230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):80, 242

               
               
               Conread position:50-384
               
               
               Cow position:chr13:20360050-20360379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):23, 141

               
               
               Conread position:50-384
               
               
               Cow position:chr13:20893866-20893528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):97, 23

               
               
               Conread position:50-384
               
               
               Cow position:chr13:25495787-25496115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):128, 7

               
               
               Conread position:50-384
               
               
               Cow position:chr13:26480426-26480104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):212, 41

               
               
               Conread position:50-384
               
               
               Cow position:chr13:34261013-34261343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr13:34263594-34263260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 26

               
               
               Conread position:50-384
               
               
               Cow position:chr13:34281458-34281785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 69

               
               
               Conread position:50-384
               
               
               Cow position:chr13:37069115-37069458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 273

               
               
               Conread position:50-384
               
               
               Cow position:chr13:49023089-49022765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 81

               
               
               Conread position:51-330
               
               
               Cow position:chr13:11103429-11103136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:51-383
               
               
               Cow position:chr13:25926564-25926900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):15, 98

               
               
               Conread position:51-384
               
               
               Cow position:chr13:6616986-6616643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 322

               
               
               Conread position:51-384
               
               
               Cow position:chr13:18491384-18491711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 41

               
               
               Conread position:51-384
               
               
               Cow position:chr13:44201787-44202101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 93

               
               
               Conread position:51-384
               
               
               Cow position:chr13:49804764-49805080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 42

               
               
               Conread position:52-209
               
               
               Cow position:chr13:17815023-17815172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:52-249
               
               
               Cow position:chr13:16163367-16163556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):113, 42

               
               
               Conread position:52-272
               
               
               Cow position:chr13:10522718-10522932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):212, 89

               
               
               Conread position:52-274
               
               
               Cow position:chr13:28536542-28536322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 130

               
               
               Conread position:52-297
               
               
               Cow position:chr13:19598886-19598645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):212, 93

               
               
               Conread position:52-328
               
               
               Cow position:chr13:12673509-12673240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):212, 110

               
               
               Conread position:52-330
               
               
               Cow position:chr13:41550024-41549732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:52-339
               
               
               Cow position:chr13:15239734-15239456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):14, 95

               
               
               Conread position:52-352
               
               
               Cow position:chr13:20868964-20868679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):212, 13

               
               
               Conread position:52-360
               
               
               Cow position:chr13:27180817-27181115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:52-378
               
               
               Cow position:chr13:55582973-55583296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):97, 118

               
               
               Conread position:52-382
               
               
               Cow position:chr13:32017737-32017419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):91, 125

               
               
               Conread position:52-382
               
               
               Cow position:chr13:44278125-44278459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):95, 30

               
               
               Conread position:52-383
               
               
               Cow position:chr13:52749684-52749370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):112, 57

               
               
               Conread position:52-384
               
               
               Cow position:chr13:12989639-12989953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):14, 63

               
               
               Conread position:53-217
               
               
               Cow position:chr13:14782128-14782284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:53-220
               
               
               Cow position:chr13:27198694-27198853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:53-231
               
               
               Cow position:chr13:14351357-14351538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):13, 136

               
               
               Conread position:53-235
               
               
               Cow position:chr13:8367498-8367675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:53-249
               
               
               Cow position:chr13:6113752-6113552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:53-257
               
               
               Cow position:chr13:21277677-21277485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:53-273
               
               
               Cow position:chr13:45130296-45130513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):135, 30

               
               
               Conread position:53-300
               
               
               Cow position:chr13:37775425-37775182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):209, 11

               
               
               Conread position:53-300
               
               
               Cow position:chr13:57986154-57985915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):19, 88

               
               
               Conread position:53-319
               
               
               Cow position:chr13:29662798-29663074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:53-330
               
               
               Cow position:chr13:19007723-19007987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):212, 33

               
               
               Conread position:53-331
               
               
               Cow position:chr13:25504313-25504589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:53-332
               
               
               Cow position:chr13:50601925-50601648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:53-344
               
               
               Cow position:chr13:14940576-14940871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):9, 135

               
               
               Conread position:53-348
               
               
               Cow position:chr13:52055814-52055521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):13, 61

               
               
               Conread position:53-364
               
               
               Cow position:chr13:13088812-13089117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):209, 75

               
               
               Conread position:53-368
               
               
               Cow position:chr13:21269801-21269489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):196, 91

               
               
               Conread position:53-371
               
               
               Cow position:chr13:59170424-59170747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):80, 141

               
               
               Conread position:53-372
               
               
               Cow position:chr13:7333232-7332903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):94, 41

               
               
               Conread position:53-378
               
               
               Cow position:chr13:4552605-4552904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 24

               
               
               Conread position:53-378
               
               
               Cow position:chr13:5911110-5910797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):248, 11

               
               
               Conread position:53-383
               
               
               Cow position:chr13:17159102-17158767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 237

               
               
               Conread position:53-383
               
               
               Cow position:chr13:19393076-19393397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 41

               
               
               Conread position:53-383
               
               
               Cow position:chr13:57002502-57002836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):94, 134

               
               
               Conread position:53-384
               
               
               Cow position:chr13:607483-607156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):124, 110

               
               
               Conread position:53-384
               
               
               Cow position:chr13:2883837-2884160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:53-384
               
               
               Cow position:chr13:8374981-8374663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 93

               
               
               Conread position:53-384
               
               
               Cow position:chr13:13501832-13501514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):13, 76

               
               
               Conread position:53-384
               
               
               Cow position:chr13:18851868-18852189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 74

               
               
               Conread position:53-384
               
               
               Cow position:chr13:19024072-19023735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):100, 123

               
               
               Conread position:53-384
               
               
               Cow position:chr13:20821057-20820727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):137, 93

               
               
               Conread position:53-384
               
               
               Cow position:chr13:24753673-24753990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):211, 87

               
               
               Conread position:53-384
               
               
               Cow position:chr13:35526414-35526101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:53-384
               
               
               Cow position:chr13:49204792-49205085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):97, 38

               
               
               Conread position:53-384
               
               
               Cow position:chr13:56686222-56686541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:53-385
               
               
               Cow position:chr13:47007933-47007620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 89

               
               
               Conread position:53-386
               
               
               Cow position:chr13:61046986-61047317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):33, 127

               
               
               Conread position:54-212
               
               
               Cow position:chr13:38395935-38396094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:54-238
               
               
               Cow position:chr13:13265345-13265524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:54-238
               
               
               Cow position:chr13:28376781-28376597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):112, 134

               
               
               Conread position:54-241
               
               
               Cow position:chr13:24107765-24107582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 78

               
               
               Conread position:54-279
               
               
               Cow position:chr13:8450114-8450335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):210, 91

               
               
               Conread position:54-282
               
               
               Cow position:chr13:84371-84586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):12, 42

               
               
               Conread position:54-324
               
               
               Cow position:chr13:38035620-38035886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):210, 91

               
               
               Conread position:54-352
               
               
               Cow position:chr13:13196021-13196318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:215
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):19, 62

               
               
               Conread position:54-353
               
               
               Cow position:chr13:11231517-11231227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 167

               
               
               Conread position:54-373
               
               
               Cow position:chr13:13554552-13554225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):78, 125

               
               
               Conread position:54-376
               
               
               Cow position:chr13:16714486-16714161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):11, 108

               
               
               Conread position:54-378
               
               
               Cow position:chr13:6973943-6974263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 91

               
               
               Conread position:54-378
               
               
               Cow position:chr13:16038502-16038191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):132, 88

               
               
               Conread position:54-378
               
               
               Cow position:chr13:25604824-25604527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:54-384
               
               
               Cow position:chr13:20881140-20880817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):153, 73

               
               
               Conread position:54-385
               
               
               Cow position:chr13:24715030-24715355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):181, 73

               
               
               Conread position:55-221
               
               
               Cow position:chr13:47651633-47651470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:55-241
               
               
               Cow position:chr13:5092614-5092428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):11, 99

               
               
               Conread position:55-242
               
               
               Cow position:chr13:18215139-18215333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:55-365
               
               
               Cow position:chr13:45073464-45073167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):143, 36

               
               
               Conread position:55-384
               
               
               Cow position:chr13:14063739-14063413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 84

               
               
               Conread position:55-384
               
               
               Cow position:chr13:20261552-20261216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):101, 132

               
               
               Conread position:56-253
               
               
               Cow position:chr13:369343-369145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:56-279
               
               
               Cow position:chr13:15061707-15061476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):116, 39

               
               
               Conread position:56-282
               
               
               Cow position:chr13:47243769-47243547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):88, 23

               
               
               Conread position:56-303
               
               
               Cow position:chr13:43525466-43525206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):65, 18

               
               
               Conread position:56-332
               
               
               Cow position:chr13:52057342-52057617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):208, 19

               
               
               Conread position:56-368
               
               
               Cow position:chr13:20497425-20497745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):93, 121

               
               
               Conread position:56-383
               
               
               Cow position:chr13:46525646-46525338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 152

               
               
               Conread position:56-383
               
               
               Cow position:chr13:53573762-53574078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):208, 14

               
               
               Conread position:56-384
               
               
               Cow position:chr13:17114598-17114269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 123

               
               
               Conread position:56-384
               
               
               Cow position:chr13:42200403-42200727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 78

               
               
               Conread position:56-386
               
               
               Cow position:chr13:16014586-16014920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):68, 38

               
               
               Conread position:57-214
               
               
               Cow position:chr13:32914478-32914317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:57-228
               
               
               Cow position:chr13:53619784-53619957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:57-233
               
               
               Cow position:chr13:28081500-28081680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:57-251
               
               
               Cow position:chr13:55775147-55775335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 72

               
               
               Conread position:57-261
               
               
               Cow position:chr13:33854897-33854698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:168
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:57-262
               
               
               Cow position:chr13:49283994-49283793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):129, 89

               
               
               Conread position:57-272
               
               
               Cow position:chr13:18093085-18092877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):207, 52

               
               
               Conread position:57-282
               
               
               Cow position:chr13:11933822-11933595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):105, 119

               
               
               Conread position:57-282
               
               
               Cow position:chr13:14411675-14411903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):89, 155

               
               
               Conread position:57-321
               
               
               Cow position:chr13:7149715-7149467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):207, 38

               
               
               Conread position:57-364
               
               
               Cow position:chr13:15195417-15195121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):207, 84

               
               
               Conread position:57-377
               
               
               Cow position:chr13:11820944-11821255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):115, 34

               
               
               Conread position:57-378
               
               
               Cow position:chr13:15621593-15621917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):214, 137

               
               
               Conread position:57-378
               
               
               Cow position:chr13:15991447-15991128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):173, 108

               
               
               Conread position:57-378
               
               
               Cow position:chr13:46515843-46516163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):97, 29

               
               
               Conread position:57-379
               
               
               Cow position:chr13:25695983-25695667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):207, 95

               
               
               Conread position:57-382
               
               
               Cow position:chr13:18058463-18058139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 94

               
               
               Conread position:57-383
               
               
               Cow position:chr13:1568718-1569031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):225, 68

               
               
               Conread position:57-384
               
               
               Cow position:chr13:6189816-6189507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:57-384
               
               
               Cow position:chr13:12670668-12670339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 47

               
               
               Conread position:57-384
               
               
               Cow position:chr13:19022048-19022384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:57-384
               
               
               Cow position:chr13:25817313-25817631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 82

               
               
               Conread position:57-384
               
               
               Cow position:chr13:38284187-38283877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):140, 16

               
               
               Conread position:57-384
               
               
               Cow position:chr13:44322676-44323009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):89, 264

               
               
               Conread position:57-384
               
               
               Cow position:chr13:54582658-54582986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 88

               
               
               Conread position:57-384
               
               
               Cow position:chr13:60375704-60375379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):73, 78

               
               
               Conread position:57-385
               
               
               Cow position:chr13:41806560-41806886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 43

               
               
               Conread position:58-212
               
               
               Cow position:chr13:20413770-20413611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:58-234
               
               
               Cow position:chr13:17619663-17619851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:58-255
               
               
               Cow position:chr13:24094532-24094337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 113

               
               
               Conread position:58-256
               
               
               Cow position:chr13:10711628-10711434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:58-352
               
               
               Cow position:chr13:7149022-7149305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):182, 37

               
               
               Conread position:58-368
               
               
               Cow position:chr13:9975283-9974983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):109, 69

               
               
               Conread position:58-381
               
               
               Cow position:chr13:311217-311536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):86, 178

               
               
               Conread position:58-384
               
               
               Cow position:chr13:18166517-18166842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 70

               
               
               Conread position:58-384
               
               
               Cow position:chr13:19223436-19223754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):76, 161

               
               
               Conread position:58-384
               
               
               Cow position:chr13:21106928-21107247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):86, 94

               
               
               Conread position:58-384
               
               
               Cow position:chr13:21136127-21135791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 240

               
               
               Conread position:58-384
               
               
               Cow position:chr13:57475632-57475307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 157

               
               
               Conread position:58-385
               
               
               Cow position:chr13:19883249-19882926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 87

               
               
               Conread position:58-388
               
               
               Cow position:chr13:15659060-15659390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):70, 118

               
               
               Conread position:59-225
               
               
               Cow position:chr13:23823244-23823084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:59-231
               
               
               Cow position:chr13:43576796-43576970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):90, 128

               
               
               Conread position:59-238
               
               
               Cow position:chr13:20155961-20156142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):97, 119

               
               
               Conread position:59-238
               
               
               Cow position:chr13:26317105-26316923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):90, 129

               
               
               Conread position:59-241
               
               
               Cow position:chr13:20368097-20367913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):97, 128

               
               
               Conread position:59-249
               
               
               Cow position:chr13:11146839-11147031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:59-249
               
               
               Cow position:chr13:21246927-21246735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):90, 128

               
               
               Conread position:59-250
               
               
               Cow position:chr13:3149647-3149458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:59-252
               
               
               Cow position:chr13:3153533-3153727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):90, 127

               
               
               Conread position:59-252
               
               
               Cow position:chr13:30711006-30711202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):43, 131

               
               
               Conread position:59-272
               
               
               Cow position:chr13:10210867-10210661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):205, 32

               
               
               Conread position:59-282
               
               
               Cow position:chr13:14644839-14645059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):168, 80

               
               
               Conread position:59-289
               
               
               Cow position:chr13:51695754-51695983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):110, 33

               
               
               Conread position:59-292
               
               
               Cow position:chr13:24215891-24215655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):95, 127

               
               
               Conread position:59-364
               
               
               Cow position:chr13:28291106-28291414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 118

               
               
               Conread position:59-372
               
               
               Cow position:chr13:25978408-25978094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):90, 100

               
               
               Conread position:59-378
               
               
               Cow position:chr13:29831641-29831334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:59-383
               
               
               Cow position:chr13:15872223-15872555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):97, 128

               
               
               Conread position:59-383
               
               
               Cow position:chr13:39826341-39826661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:59-384
               
               
               Cow position:chr13:2773901-2774236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):68, 232

               
               
               Conread position:59-384
               
               
               Cow position:chr13:9906514-9906842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):88, 118

               
               
               Conread position:59-384
               
               
               Cow position:chr13:15193103-15192781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):7, 203

               
               
               Conread position:59-384
               
               
               Cow position:chr13:22085946-22085635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 30

               
               
               Conread position:59-384
               
               
               Cow position:chr13:25380730-25381071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):97, 242

               
               
               Conread position:59-384
               
               
               Cow position:chr13:26262006-26261689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):93, 128

               
               
               Conread position:59-384
               
               
               Cow position:chr13:32282912-32283233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):85, 17

               
               
               Conread position:59-384
               
               
               Cow position:chr13:55674424-55674100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 226

               
               
               Conread position:59-388
               
               
               Cow position:chr13:34533143-34532821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):107, 68

               
               
               Conread position:60-241
               
               
               Cow position:chr13:48126891-48127074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 127

               
               
               Conread position:60-245
               
               
               Cow position:chr13:17994586-17994403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):125, 104

               
               
               Conread position:60-249
               
               
               Cow position:chr13:16099342-16099147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:60-250
               
               
               Cow position:chr13:22345488-22345302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 82

               
               
               Conread position:60-255
               
               
               Cow position:chr13:52913663-52913853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:60-352
               
               
               Cow position:chr13:33256284-33256578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):86, 117

               
               
               Conread position:60-379
               
               
               Cow position:chr13:37985961-37985655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):122, 204

               
               
               Conread position:60-384
               
               
               Cow position:chr13:3160189-3160500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):111, 78

               
               
               Conread position:60-384
               
               
               Cow position:chr13:5758545-5758232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 26

               
               
               Conread position:60-384
               
               
               Cow position:chr13:15289132-15288821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 80

               
               
               Conread position:60-384
               
               
               Cow position:chr13:20174524-20174859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):24, 127

               
               
               Conread position:60-384
               
               
               Cow position:chr13:26698710-26698388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 85

               
               
               Conread position:60-384
               
               
               Cow position:chr13:35659541-35659862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 161

               
               
               Conread position:60-384
               
               
               Cow position:chr13:37818958-37818640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:60-384
               
               
               Cow position:chr13:58763822-58763523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:60-384
               
               
               Cow position:chr13:61977171-61976856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):76, 125

               
               
               Conread position:60-386
               
               
               Cow position:chr13:37593159-37592833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:61-250
               
               
               Cow position:chr13:16476641-16476834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):85, 107

               
               
               Conread position:61-268
               
               
               Cow position:chr13:8699955-8699743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:61-271
               
               
               Cow position:chr13:42849342-42849136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):36, 78

               
               
               Conread position:61-325
               
               
               Cow position:chr13:21171784-21171522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):174, 91

               
               
               Conread position:61-384
               
               
               Cow position:chr13:15958410-15958732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):176, 58

               
               
               Conread position:61-384
               
               
               Cow position:chr13:21242288-21241984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 66

               
               
               Conread position:61-385
               
               
               Cow position:chr13:5671798-5671481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 90

               
               
               Conread position:62-231
               
               
               Cow position:chr13:26395248-26395417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-285
               
               
               Cow position:chr13:14035210-14034984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):85, 125

               
               
               Conread position:62-291
               
               
               Cow position:chr13:2776073-2776305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):84, 125

               
               
               Conread position:62-325
               
               
               Cow position:chr13:15257578-15257319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):202, 24

               
               
               Conread position:62-326
               
               
               Cow position:chr13:20115033-20115304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):84, 129

               
               
               Conread position:62-378
               
               
               Cow position:chr13:24692747-24693054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):102, 32

               
               
               Conread position:62-384
               
               
               Cow position:chr13:19278884-19279200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 43

               
               
               Conread position:62-384
               
               
               Cow position:chr13:20784383-20784697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 79

               
               
               Conread position:63-388
               
               
               Cow position:chr13:27525469-27525152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 28

               
               
               Conread position:64-213
               
               
               Cow position:chr13:7097377-7097524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:64-214
               
               
               Cow position:chr13:25313358-25313210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:64-316
               
               
               Cow position:chr13:55494728-55494479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:196
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):200, 28

               
               
               Conread position:64-384
               
               
               Cow position:chr13:4665059-4664758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:64-384
               
               
               Cow position:chr13:20217607-20217279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 82

               
               
               Conread position:64-384
               
               
               Cow position:chr13:24585839-24586150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:65-237
               
               
               Cow position:chr13:16525436-16525261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):78, 138

               
               
               Conread position:65-331
               
               
               Cow position:chr13:35557319-35557049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 81

               
               
               Conread position:65-378
               
               
               Cow position:chr13:6442315-6442003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):71, 64

               
               
               Conread position:68-272
               
               
               Cow position:chr13:52536366-52536563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):153, 49

               
               
               Conread position:68-273
               
               
               Cow position:chr13:51207693-51207485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 108

               
               
               Conread position:68-384
               
               
               Cow position:chr13:37803674-37803988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):59, 207

               
               
               Conread position:68-384
               
               
               Cow position:chr13:38548380-38548689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):80, 117

               
               
               Conread position:69-257
               
               
               Cow position:chr13:45675493-45675682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):80, 108

               
               
               Conread position:69-378
               
               
               Cow position:chr13:17338221-17338538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):85, 107

               
               
               Conread position:69-384
               
               
               Cow position:chr13:15974414-15974723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):236, 93

               
               
               Conread position:69-384
               
               
               Cow position:chr13:48597705-48598019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 76

               
               
               Conread position:71-241
               
               
               Cow position:chr13:8537616-8537788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 116

               
               
               Conread position:71-267
               
               
               Cow position:chr13:38012137-38012325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):193, 70

               
               
               Conread position:71-378
               
               
               Cow position:chr13:18929323-18929630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):73, 119

               
               
               Conread position:72-268
               
               
               Cow position:chr13:18340329-18340526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:72-272
               
               
               Cow position:chr13:6926311-6926515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:72-331
               
               
               Cow position:chr13:19174896-19174636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):74, 104

               
               
               Conread position:72-352
               
               
               Cow position:chr13:38873158-38872875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):54, 157

               
               
               Conread position:72-378
               
               
               Cow position:chr13:49475870-49476188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):74, 118

               
               
               Conread position:72-380
               
               
               Cow position:chr13:48165624-48165320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):108, 20

               
               
               Conread position:72-382
               
               
               Cow position:chr13:12206860-12207150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):151, 57

               
               
               Conread position:72-384
               
               
               Cow position:chr13:11260076-11260378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):223, 73

               
               
               Conread position:72-384
               
               
               Cow position:chr13:61252809-61253135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):75, 114

               
               
               Conread position:73-383
               
               
               Cow position:chr13:57494373-57494080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):194, 49

               
               
               Conread position:73-384
               
               
               Cow position:chr13:24369385-24369689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 15

               
               
               Conread position:74-352
               
               
               Cow position:chr13:19779054-19778772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):92, 114

               
               
               Conread position:74-384
               
               
               Cow position:chr13:18994923-18995237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):75, 103

               
               
               Conread position:76-376
               
               
               Cow position:chr13:44626168-44626469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):117, 261

               
               
               Conread position:78-340
               
               
               Cow position:chr13:13211693-13211951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):186, 43

               
               
               Conread position:79-378
               
               
               Cow position:chr13:51015378-51015084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):75, 109

               
               
               Conread position:79-384
               
               
               Cow position:chr13:52228292-52227991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 47

               
               
               Conread position:80-364
               
               
               Cow position:chr13:20250708-20250996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 108

               
               
               Conread position:80-384
               
               
               Cow position:chr13:20248328-20248618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):294, 6

               
               
               Conread position:81-234
               
               
               Cow position:chr13:1037445-1037598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 73

               
               
               Conread position:83-317
               
               
               Cow position:chr13:8408429-8408673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):63, 93

               
               
               Conread position:83-343
               
               
               Cow position:chr13:20606311-20606046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 93

               
               
               Conread position:86-255
               
               
               Cow position:chr13:9391377-9391540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:86-378
               
               
               Cow position:chr13:24230022-24230312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):57, 200

               
               
               Conread position:86-384
               
               
               Cow position:chr13:58043438-58043738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):61, 89

               
               
               Conread position:88-254
               
               
               Cow position:chr13:16790027-16790188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):10, 55

               
               
               Conread position:89-382
               
               
               Cow position:chr13:20154821-20155107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):166, 33

               
               
               Conread position:90-384
               
               
               Cow position:chr13:39423641-39423930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 127

               
               
               Conread position:92-364
               
               
               Cow position:chr13:20871212-20871478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):148, 38

               
               
               Conread position:92-384
               
               
               Cow position:chr13:20666567-20666279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 54

               
               
               Conread position:92-384
               
               
               Cow position:chr13:23478847-23479136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 227

               
               
               Conread position:97-384
               
               
               Cow position:chr13:15529217-15528923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):8, 53

               
               
               Conread position:98-328
               
               
               Cow position:chr13:16160245-16160470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):166, 40

               
               
               Conread position:98-383
               
               
               Cow position:chr13:25547761-25547478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 92

               
               
               Conread position:98-384
               
               
               Cow position:chr13:12408470-12408178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):50, 98

               
               
               Conread position:99-384
               
               
               Cow position:chr13:6087067-6086795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):14, 54

               
               
               Conread position:109-368
               
               
               Cow position:chr13:50751224-50750961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 67

               
               
               Conread position:109-382
               
               
               Cow position:chr13:46324951-46324678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):155, 50

               
               
               Conread position:125-366
               
               
               Cow position:chr13:3211398-3211642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):13, 151

               
               
               Conread position:126-257
               
               
               Cow position:chr13:21188221-21188350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:128-256
               
               
               Cow position:chr13:12237300-12237426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:128-262
               
               
               Cow position:chr13:40634717-40634852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:128-337
               
               
               Cow position:chr13:24110333-24110548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:128-348
               
               
               Cow position:chr13:56148376-56148596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):118, 24

               
               
               Conread position:128-348
               
               
               Cow position:chr13:56160591-56160371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):118, 24

               
               
               Conread position:128-378
               
               
               Cow position:chr13:11096035-11096276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):135, 52

               
               
               Conread position:128-382
               
               
               Cow position:chr13:55727753-55728006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):29, 62

               
               
               Conread position:128-383
               
               
               Cow position:chr13:3315822-3315569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):136, 156

               
               
               Conread position:128-383
               
               
               Cow position:chr13:23856066-23856320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 18

               
               
               Conread position:128-384
               
               
               Cow position:chr13:2413884-2414139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):138, 23

               
               
               Conread position:128-384
               
               
               Cow position:chr13:5082504-5082759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):134, 91

               
               
               Conread position:128-384
               
               
               Cow position:chr13:7488396-7488648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):113, 32

               
               
               Conread position:128-384
               
               
               Cow position:chr13:12547055-12546801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):43, 60

               
               
               Conread position:128-384
               
               
               Cow position:chr13:20684276-20684012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):25, 168

               
               
               Conread position:128-384
               
               
               Cow position:chr13:49520972-49520713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):21, 62

               
               
               Conread position:128-384
               
               
               Cow position:chr13:56155296-56155050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):136, 23

               
               
               Conread position:129-262
               
               
               Cow position:chr13:6962307-6962439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:129-348
               
               
               Cow position:chr13:9981989-9981768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:129-366
               
               
               Cow position:chr13:51901440-51901683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:129-378
               
               
               Cow position:chr13:47022221-47022462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):135, 7

               
               
               Conread position:129-379
               
               
               Cow position:chr13:37528097-37527864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:129-384
               
               
               Cow position:chr13:18172190-18172447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:129-384
               
               
               Cow position:chr13:18696695-18696951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):135, 49

               
               
               Conread position:129-384
               
               
               Cow position:chr13:20839418-20839672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):14, 158

               
               
               Conread position:129-384
               
               
               Cow position:chr13:51940590-51940845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):169, 23

               
               
               Conread position:130-381
               
               
               Cow position:chr13:3989059-3989308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):134, 25

               
               
               Conread position:130-383
               
               
               Cow position:chr13:11381871-11381614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 204

               
               
               Conread position:131-302
               
               
               Cow position:chr13:8350178-8350347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):24, 150

               
               
               Conread position:131-364
               
               
               Cow position:chr13:20679191-20679428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):15, 159

               
               
               Conread position:131-368
               
               
               Cow position:chr13:37640444-37640676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):27, 154

               
               
               Conread position:131-369
               
               
               Cow position:chr13:13297535-13297768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):131, 51

               
               
               Conread position:131-375
               
               
               Cow position:chr13:50568548-50568317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):131, 20

               
               
               Conread position:131-380
               
               
               Cow position:chr13:8355062-8355302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):6, 16

               
               
               Conread position:131-381
               
               
               Cow position:chr13:17439912-17439664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 95

               
               
               Conread position:131-382
               
               
               Cow position:chr13:36771565-36771312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 53

               
               
               Conread position:131-383
               
               
               Cow position:chr13:9265968-9265724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:131-383
               
               
               Cow position:chr13:19320388-19320643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:131-383
               
               
               Cow position:chr13:40943099-40943352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):24, 57

               
               
               Conread position:131-384
               
               
               Cow position:chr13:1043106-1042856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):133, 30

               
               
               Conread position:131-384
               
               
               Cow position:chr13:14771308-14771566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 53

               
               
               Conread position:131-384
               
               
               Cow position:chr13:20706349-20706097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):134, 152

               
               
               Conread position:131-384
               
               
               Cow position:chr13:23167245-23166987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):13, 32

               
               
               Conread position:131-397
               
               
               Cow position:chr13:51116169-51115908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):24, 153

               
               
               Conread position:131-399
               
               
               Cow position:chr13:60973936-60974205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):133, 30

               
               
               Conread position:132-348
               
               
               Cow position:chr13:827105-827315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):132, 15

               
               
               Conread position:132-383
               
               
               Cow position:chr13:18835061-18835300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:132-384
               
               
               Cow position:chr13:52586179-52585912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):132, 19

               
               
               Conread position:133-384
               
               
               Cow position:chr13:37381659-37381915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):135, 153

               
               
               Conread position:133-384
               
               
               Cow position:chr13:43185020-43184763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):110, 23

               
               
               Conread position:133-384
               
               
               Cow position:chr13:55316337-55316080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:134-368
               
               
               Cow position:chr13:547356-547576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:134-379
               
               
               Cow position:chr13:39367820-39368057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 18

               
               
               Conread position:134-382
               
               
               Cow position:chr13:11321756-11321509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):159, 18

               
               
               Conread position:135-307
               
               
               Cow position:chr13:8478265-8478435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):167, 19

               
               
               Conread position:135-384
               
               
               Cow position:chr13:13176513-13176760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):129, 19

               
               
               Conread position:135-384
               
               
               Cow position:chr13:17799937-17800181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):25, 74

               
               
               Conread position:138-384
               
               
               Cow position:chr13:11460495-11460730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):17, 144

               
               
               Conread position:139-384
               
               
               Cow position:chr13:11820463-11820703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):86, 48

               
               
               Conread position:145-384
               
               
               Cow position:chr13:17966337-17966100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):41, 7

               
               
               Conread position:145-384
               
               
               Cow position:chr13:23270335-23270102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):119, 87

               
               
               Conread position:146-376
               
               
               Cow position:chr13:40722836-40722607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):119, 139

               
               
               Conread position:146-378
               
               
               Cow position:chr13:11060858-11061088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 141

               
               
               Conread position:146-384
               
               
               Cow position:chr13:21176448-21176213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):118, 32

               
               
               Conread position:146-384
               
               
               Cow position:chr13:43762040-43762278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):118, 17

               
               
               Conread position:146-384
               
               
               Cow position:chr13:48037494-48037730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):118, 76

               
               
               Conread position:147-282
               
               
               Cow position:chr13:48465959-48465828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):120, 31

               
               
               Conread position:147-383
               
               
               Cow position:chr13:15144494-15144265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):6, 28

               
               
               Conread position:147-384
               
               
               Cow position:chr13:10929116-10928884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):117, 84

               
               
               Conread position:147-384
               
               
               Cow position:chr13:15166690-15166928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):118, 74

               
               
               Conread position:147-384
               
               
               Cow position:chr13:31813749-31813980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):117, 12

               
               
               Conread position:147-384
               
               
               Cow position:chr13:37484408-37484165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):7, 182

               
               
               Conread position:147-384
               
               
               Cow position:chr13:37981872-37981638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):119, 80

               
               
               Conread position:147-384
               
               
               Cow position:chr13:53566473-53566704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):151, 75

               
               
               Conread position:151-308
               
               
               Cow position:chr13:31529754-31529912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):111, 10

               
               
               Conread position:152-332
               
               
               Cow position:chr13:18181898-18181716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:152-382
               
               
               Cow position:chr13:56677892-56678122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):112, 60

               
               
               Conread position:152-383
               
               
               Cow position:chr13:15110191-15110428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:153-383
               
               
               Cow position:chr13:43194047-43194283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 27

               
               
               Conread position:153-384
               
               
               Cow position:chr13:9593384-9593617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):111, 27

               
               
               Conread position:153-384
               
               
               Cow position:chr13:12202240-12202475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:154-257
               
               
               Cow position:chr13:16156346-16156243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:84
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:154-384
               
               
               Cow position:chr13:62518451-62518223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):110, 161

               
               
               Conread position:155-378
               
               
               Cow position:chr13:52284696-52284909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):111, 19

               
               
               Conread position:155-383
               
               
               Cow position:chr13:25435243-25435012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):49, 43

               
               
               Conread position:155-384
               
               
               Cow position:chr13:15902904-15903125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):109, 130

               
               
               Conread position:155-384
               
               
               Cow position:chr13:47322530-47322295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:155-384
               
               
               Cow position:chr13:54094690-54094920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:155-394
               
               
               Cow position:chr13:18989603-18989832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:156-379
               
               
               Cow position:chr13:8652561-8652335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:156-384
               
               
               Cow position:chr13:6061127-6060901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):108, 134

               
               
               Conread position:156-384
               
               
               Cow position:chr13:23512252-23512476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):222, 31

               
               
               Conread position:158-300
               
               
               Cow position:chr13:47634390-47634533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:161-343
               
               
               Cow position:chr13:29123190-29123373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):69, 113

               
               
               Conread position:161-384
               
               
               Cow position:chr13:6153898-6153673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):109, 128

               
               
               Conread position:161-384
               
               
               Cow position:chr13:7663536-7663315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):104, 132

               
               
               Conread position:161-384
               
               
               Cow position:chr13:15885136-15884911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:162-363
               
               
               Cow position:chr13:48862208-48862008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):108, 60

               
               
               Conread position:163-362
               
               
               Cow position:chr13:18005562-18005759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:163-383
               
               
               Cow position:chr13:34555940-34555724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):101, 89

               
               
               Conread position:163-384
               
               
               Cow position:chr13:62600896-62601114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):101, 5

               
               
               Conread position:168-384
               
               
               Cow position:chr13:8201590-8201377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):67, 119

               
               
               Conread position:173-384
               
               
               Cow position:chr13:18243760-18243972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):92, 112

               
               
               Conread position:174-383
               
               
               Cow position:chr13:17622187-17622389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):90, 119

               
               
               Conread position:174-384
               
               
               Cow position:chr13:8524719-8524512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):90, 182

               
               
               Conread position:174-384
               
               
               Cow position:chr13:9643988-9643777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):90, 115

               
               
               Conread position:174-384
               
               
               Cow position:chr13:48375734-48375536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:179-384
               
               
               Cow position:chr13:15233830-15234023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):85, 106

               
               
               Conread position:180-384
               
               
               Cow position:chr13:11955212-11955001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):39, 203

               
               
               Conread position:180-384
               
               
               Cow position:chr13:45725797-45726005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):71, 33

               
               
               Conread position:185-368
               
               
               Cow position:chr13:23521858-23522030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:187-384
               
               
               Cow position:chr13:34941738-34941544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):70, 92

               
               
               Conread position:190-344
               
               
               Cow position:chr13:61166535-61166384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 33

               
               
               Conread position:190-384
               
               
               Cow position:chr13:890254-890063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):76, 53

               
               
               Conread position:190-384
               
               
               Cow position:chr13:25062328-25062517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 35

               
               
               Conread position:190-385
               
               
               Cow position:chr13:46181707-46181902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):75, 95

               
               
               Conread position:191-378
               
               
               Cow position:chr13:50713126-50713303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 86

               
               
               Conread position:191-384
               
               
               Cow position:chr13:25531874-25531679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):74, 49

               
               
               Conread position:194-378
               
               
               Cow position:chr13:20650068-20649882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):9, 183

               
               
               Conread position:194-384
               
               
               Cow position:chr13:17613259-17613455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:194-384
               
               
               Cow position:chr13:20562912-20563105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):52, 67

               
               
               Conread position:194-384
               
               
               Cow position:chr13:40651853-40652042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 114

               
               
               Conread position:202-384
               
               
               Cow position:chr13:12619188-12619005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):69, 82

               
               
               Conread position:203-384
               
               
               Cow position:chr13:24376421-24376598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 80

               
               
               Conread position:203-384
               
               
               Cow position:chr13:55295698-55295514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:206-384
               
               
               Cow position:chr13:10099056-10098882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 7

               
               
               Conread position:207-384
               
               
               Cow position:chr13:626489-626669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):17, 11

               
               
               Conread position:208-384
               
               
               Cow position:chr13:52922031-52922201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 15

               
               
               Conread position:209-383
               
               
               Cow position:chr13:20128600-20128773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):55, 76

               
               
               Conread position:211-384
               
               
               Cow position:chr13:16024525-16024700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:216-384
               
               
               Cow position:chr13:30693655-30693814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):48, 69

               
               
               Conread position:218-384
               
               
               Cow position:chr13:37521433-37521271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 59

               
               
               Conread position:223-387
               
               
               Cow position:chr13:32826510-32826344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:237-383
               
               
               Cow position:chr13:12682584-12682437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 100

               
               
               Conread position:1-363
               
               
               Cow position:chr14:28153958-28153601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:245
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):146, 24

               
               
               Conread position:1-376
               
               
               Cow position:chr14:5222501-5222131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):156, 174

               
               
               Conread position:1-384
               
               
               Cow position:chr14:1803334-1802949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):145, 63

               
               
               Conread position:2-225
               
               
               Cow position:chr14:29011261-29011036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):154, 185

               
               
               Conread position:2-241
               
               
               Cow position:chr14:5668332-5668095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):144, 22

               
               
               Conread position:2-343
               
               
               Cow position:chr14:47609798-47609458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):145, 51

               
               
               Conread position:2-384
               
               
               Cow position:chr14:38747466-38747832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:267
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 47

               
               
               Conread position:4-377
               
               
               Cow position:chr14:7799702-7800073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 93

               
               
               Conread position:5-378
               
               
               Cow position:chr14:6490917-6490546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 183

               
               
               Conread position:6-382
               
               
               Cow position:chr14:33300482-33300869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:267
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):21, 71

               
               
               Conread position:8-343
               
               
               Cow position:chr14:44558027-44557686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):14, 49

               
               
               Conread position:9-384
               
               
               Cow position:chr14:15492381-15492762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 84

               
               
               Conread position:10-251
               
               
               Cow position:chr14:20010716-20010470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 18

               
               
               Conread position:11-225
               
               
               Cow position:chr14:10940067-10939854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):136, 16

               
               
               Conread position:13-240
               
               
               Cow position:chr14:14104168-14104390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):147, 13

               
               
               Conread position:13-352
               
               
               Cow position:chr14:41472181-41471838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):64, 279

               
               
               Conread position:14-368
               
               
               Cow position:chr14:41253184-41252839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):38, 108

               
               
               Conread position:17-329
               
               
               Cow position:chr14:16524262-16524587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:18-330
               
               
               Cow position:chr14:49806978-49807281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):245, 39

               
               
               Conread position:18-384
               
               
               Cow position:chr14:39918939-39918597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):31, 98

               
               
               Conread position:19-343
               
               
               Cow position:chr14:19851219-19850900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):174, 10

               
               
               Conread position:20-289
               
               
               Cow position:chr14:18941477-18941214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):117, 29

               
               
               Conread position:20-332
               
               
               Cow position:chr14:33751341-33751650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):78, 29

               
               
               Conread position:22-325
               
               
               Cow position:chr14:26824990-26825291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):11, 157

               
               
               Conread position:26-282
               
               
               Cow position:chr14:43868115-43868374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):91, 178

               
               
               Conread position:26-321
               
               
               Cow position:chr14:24527354-24527058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):22, 39

               
               
               Conread position:26-345
               
               
               Cow position:chr14:50414606-50414921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):121, 23

               
               
               Conread position:26-383
               
               
               Cow position:chr14:3949291-3948936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:245
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:27-282
               
               
               Cow position:chr14:12924114-12924367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 77

               
               
               Conread position:28-217
               
               
               Cow position:chr14:24746267-24746465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:28-373
               
               
               Cow position:chr14:47252424-47252070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 283

               
               
               Conread position:29-281
               
               
               Cow position:chr14:19487126-19487359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):235, 28

               
               
               Conread position:29-308
               
               
               Cow position:chr14:27884829-27885108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):159, 24

               
               
               Conread position:29-326
               
               
               Cow position:chr14:12146668-12146371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):159, 24

               
               
               Conread position:29-378
               
               
               Cow position:chr14:3868617-3868269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):120, 21

               
               
               Conread position:29-384
               
               
               Cow position:chr14:10078066-10078433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 272

               
               
               Conread position:29-384
               
               
               Cow position:chr14:14417683-14417331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):106, 21

               
               
               Conread position:29-384
               
               
               Cow position:chr14:15931687-15932042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):125, 24

               
               
               Conread position:29-463
               
               
               Cow position:chr14:12512079-12511658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:287
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):272, 110

               
               
               Conread position:31-244
               
               
               Cow position:chr14:33414407-33414198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:31-262
               
               
               Cow position:chr14:21557209-21556982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:31-332
               
               
               Cow position:chr14:19827658-19827357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):214, 63

               
               
               Conread position:31-352
               
               
               Cow position:chr14:12855979-12855660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 33

               
               
               Conread position:31-373
               
               
               Cow position:chr14:11846311-11846650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):151, 178

               
               
               Conread position:31-373
               
               
               Cow position:chr14:47584844-47584501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):115, 25

               
               
               Conread position:31-378
               
               
               Cow position:chr14:38920771-38921109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):95, 55

               
               
               Conread position:31-379
               
               
               Cow position:chr14:15504342-15503999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):85, 19

               
               
               Conread position:31-385
               
               
               Cow position:chr14:9019855-9020194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):35, 12

               
               
               Conread position:32-274
               
               
               Cow position:chr14:15470174-15469925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):24, 197

               
               
               Conread position:32-282
               
               
               Cow position:chr14:28465402-28465155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):104, 32

               
               
               Conread position:32-289
               
               
               Cow position:chr14:25903344-25903603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):34, 18

               
               
               Conread position:32-317
               
               
               Cow position:chr14:33546542-33546255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:32-332
               
               
               Cow position:chr14:4047567-4047864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):122, 15

               
               
               Conread position:32-351
               
               
               Cow position:chr14:13582937-13582618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):112, 33

               
               
               Conread position:32-359
               
               
               Cow position:chr14:1708845-1708516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):8, 159

               
               
               Conread position:32-378
               
               
               Cow position:chr14:27338156-27338501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):102, 21

               
               
               Conread position:32-383
               
               
               Cow position:chr14:8848095-8848410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):273, 18

               
               
               Conread position:32-383
               
               
               Cow position:chr14:24748409-24748069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 35

               
               
               Conread position:33-238
               
               
               Cow position:chr14:20996984-20996783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:33-272
               
               
               Cow position:chr14:23078976-23078737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):231, 118

               
               
               Conread position:33-282
               
               
               Cow position:chr14:14812403-14812155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):113, 16

               
               
               Conread position:33-321
               
               
               Cow position:chr14:23962671-23962956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):111, 34

               
               
               Conread position:33-348
               
               
               Cow position:chr14:12635061-12634757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):231, 95

               
               
               Conread position:33-379
               
               
               Cow position:chr14:28304973-28304629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):27, 155

               
               
               Conread position:33-384
               
               
               Cow position:chr14:4877411-4877065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 102

               
               
               Conread position:33-384
               
               
               Cow position:chr14:13042575-13042922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 96

               
               
               Conread position:33-385
               
               
               Cow position:chr14:33457227-33456872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:33-462
               
               
               Cow position:chr14:25681738-25682172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:280
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):20, 41

               
               
               Conread position:34-232
               
               
               Cow position:chr14:33618124-33618317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 113

               
               
               Conread position:34-282
               
               
               Cow position:chr14:26172579-26172329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):120, 19

               
               
               Conread position:34-283
               
               
               Cow position:chr14:18301780-18302027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):94, 16

               
               
               Conread position:34-365
               
               
               Cow position:chr14:35381408-35381738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):110, 19

               
               
               Conread position:34-379
               
               
               Cow position:chr14:24921917-24922262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):110, 19

               
               
               Conread position:34-383
               
               
               Cow position:chr14:17554668-17554326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):133, 15

               
               
               Conread position:34-384
               
               
               Cow position:chr14:11508423-11508080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 144

               
               
               Conread position:34-384
               
               
               Cow position:chr14:48492978-48492621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):115, 15

               
               
               Conread position:35-332
               
               
               Cow position:chr14:3498633-3498920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):151, 18

               
               
               Conread position:35-384
               
               
               Cow position:chr14:10858259-10858598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):63, 22

               
               
               Conread position:36-343
               
               
               Cow position:chr14:4867898-4868195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 17

               
               
               Conread position:36-368
               
               
               Cow position:chr14:20712864-20712540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):28, 63

               
               
               Conread position:36-384
               
               
               Cow position:chr14:41749937-41749592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 107

               
               
               Conread position:37-258
               
               
               Cow position:chr14:145690-145471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):59, 15

               
               
               Conread position:37-339
               
               
               Cow position:chr14:39414980-39415279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):117, 16

               
               
               Conread position:37-364
               
               
               Cow position:chr14:14949396-14949067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):38, 128

               
               
               Conread position:37-377
               
               
               Cow position:chr14:13385184-13385527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):23, 141

               
               
               Conread position:37-384
               
               
               Cow position:chr14:22988855-22989200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 115

               
               
               Conread position:37-384
               
               
               Cow position:chr14:26859916-26859558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):107, 27

               
               
               Conread position:38-238
               
               
               Cow position:chr14:1771143-1770941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 127

               
               
               Conread position:38-252
               
               
               Cow position:chr14:18270183-18270395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):109, 15

               
               
               Conread position:38-373
               
               
               Cow position:chr14:24236646-24236978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 15

               
               
               Conread position:38-377
               
               
               Cow position:chr14:37422953-37422628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:38-378
               
               
               Cow position:chr14:12667544-12667889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):17, 63

               
               
               Conread position:38-379
               
               
               Cow position:chr14:19129327-19129670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:40-238
               
               
               Cow position:chr14:30023376-30023177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:40-272
               
               
               Cow position:chr14:28923990-28924223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):97, 13

               
               
               Conread position:40-368
               
               
               Cow position:chr14:5025101-5025432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):142, 248

               
               
               Conread position:40-378
               
               
               Cow position:chr14:28378182-28378520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):142, 12

               
               
               Conread position:41-332
               
               
               Cow position:chr14:24945671-24945375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):25, 51

               
               
               Conread position:41-363
               
               
               Cow position:chr14:20954505-20954831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):16, 31

               
               
               Conread position:41-384
               
               
               Cow position:chr14:4203272-4202927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):27, 40

               
               
               Conread position:41-384
               
               
               Cow position:chr14:26628706-26628358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 131

               
               
               Conread position:42-368
               
               
               Cow position:chr14:12954551-12954233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):24, 81

               
               
               Conread position:43-257
               
               
               Cow position:chr14:4860322-4860541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 137

               
               
               Conread position:43-331
               
               
               Cow position:chr14:8923761-8923471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):101, 55

               
               
               Conread position:43-343
               
               
               Cow position:chr14:40002157-40001853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 62

               
               
               Conread position:43-384
               
               
               Cow position:chr14:39434428-39434093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):223, 95

               
               
               Conread position:43-384
               
               
               Cow position:chr14:49929918-49929572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):114, 21

               
               
               Conread position:44-326
               
               
               Cow position:chr14:15313386-15313671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):146, 20

               
               
               Conread position:44-384
               
               
               Cow position:chr14:15518576-15518212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:46-215
               
               
               Cow position:chr14:2852976-2853147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):9, 84

               
               
               Conread position:46-385
               
               
               Cow position:chr14:36437659-36437319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):142, 18

               
               
               Conread position:47-244
               
               
               Cow position:chr14:8083026-8083224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):102, 129

               
               
               Conread position:47-273
               
               
               Cow position:chr14:20984167-20984394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:47-274
               
               
               Cow position:chr14:49940844-49941065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):117, 17

               
               
               Conread position:47-366
               
               
               Cow position:chr14:7290630-7290946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:47-378
               
               
               Cow position:chr14:20016878-20016545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):97, 6

               
               
               Conread position:47-392
               
               
               Cow position:chr14:27823263-27823606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:234
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:48-320
               
               
               Cow position:chr14:44713248-44713518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:48-331
               
               
               Cow position:chr14:6864830-6865117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):108, 16

               
               
               Conread position:48-337
               
               
               Cow position:chr14:49713812-49714098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):140, 16

               
               
               Conread position:48-378
               
               
               Cow position:chr14:12343010-12342660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:48-378
               
               
               Cow position:chr14:35420929-35420603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):117, 5

               
               
               Conread position:48-383
               
               
               Cow position:chr14:3194704-3195013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):216, 43

               
               
               Conread position:48-383
               
               
               Cow position:chr14:48447336-48446998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 127

               
               
               Conread position:48-384
               
               
               Cow position:chr14:11043662-11043327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:48-384
               
               
               Cow position:chr14:13809787-13810104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):258, 5

               
               
               Conread position:48-384
               
               
               Cow position:chr14:26442515-26442176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 178

               
               
               Conread position:48-384
               
               
               Cow position:chr14:40329271-40329610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):25, 135

               
               
               Conread position:48-384
               
               
               Cow position:chr14:47276869-47276538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):72, 16

               
               
               Conread position:48-387
               
               
               Cow position:chr14:6600120-6599782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):203, 25

               
               
               Conread position:48-410
               
               
               Cow position:chr14:31130544-31130189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):86, 5

               
               
               Conread position:49-255
               
               
               Cow position:chr14:18559225-18559024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):143, 78

               
               
               Conread position:49-297
               
               
               Cow position:chr14:4848181-4848426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):12, 38

               
               
               Conread position:49-339
               
               
               Cow position:chr14:10693425-10693138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):95, 175

               
               
               Conread position:49-368
               
               
               Cow position:chr14:7036528-7036205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):98, 128

               
               
               Conread position:49-373
               
               
               Cow position:chr14:26222568-26222899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):144, 47

               
               
               Conread position:49-383
               
               
               Cow position:chr14:32452083-32452418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):210, 68

               
               
               Conread position:49-384
               
               
               Cow position:chr14:24416725-24417050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:248
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):14, 67

               
               
               Conread position:49-384
               
               
               Cow position:chr14:36254859-36254541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 80

               
               
               Conread position:49-414
               
               
               Cow position:chr14:19321678-19321309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):107, 119

               
               
               Conread position:50-233
               
               
               Cow position:chr14:32784285-32784100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):79, 104

               
               
               Conread position:50-243
               
               
               Cow position:chr14:41267889-41267707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:50-249
               
               
               Cow position:chr14:48829903-48829708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):121, 56

               
               
               Conread position:50-251
               
               
               Cow position:chr14:20736446-20736644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):12, 53

               
               
               Conread position:50-255
               
               
               Cow position:chr14:27364411-27364614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):97, 14

               
               
               Conread position:50-272
               
               
               Cow position:chr14:15428311-15428533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):212, 77

               
               
               Conread position:50-283
               
               
               Cow position:chr14:10706711-10706941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):217, 95

               
               
               Conread position:50-284
               
               
               Cow position:chr14:9307898-9308132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):16, 42

               
               
               Conread position:50-289
               
               
               Cow position:chr14:21371951-21371708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):190, 76

               
               
               Conread position:50-298
               
               
               Cow position:chr14:12033412-12033161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):77, 138

               
               
               Conread position:50-317
               
               
               Cow position:chr14:7198328-7198601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):96, 137

               
               
               Conread position:50-321
               
               
               Cow position:chr14:21357391-21357663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):214, 14

               
               
               Conread position:50-321
               
               
               Cow position:chr14:41838026-41837769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):214, 61

               
               
               Conread position:50-343
               
               
               Cow position:chr14:27504405-27504106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):72, 105

               
               
               Conread position:50-351
               
               
               Cow position:chr14:40474395-40474694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):97, 170

               
               
               Conread position:50-368
               
               
               Cow position:chr14:45045429-45045750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):143, 122

               
               
               Conread position:50-376
               
               
               Cow position:chr14:8541376-8541055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 73

               
               
               Conread position:50-378
               
               
               Cow position:chr14:8786705-8786392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):23, 73

               
               
               Conread position:50-378
               
               
               Cow position:chr14:21535471-21535161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):16, 90

               
               
               Conread position:50-379
               
               
               Cow position:chr14:23424097-23424418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):23, 76

               
               
               Conread position:50-382
               
               
               Cow position:chr14:45677064-45677387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 73

               
               
               Conread position:50-384
               
               
               Cow position:chr14:15997919-15997601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):18, 80

               
               
               Conread position:50-384
               
               
               Cow position:chr14:20110889-20110557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 103

               
               
               Conread position:50-384
               
               
               Cow position:chr14:20640797-20640461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 102

               
               
               Conread position:50-384
               
               
               Cow position:chr14:20932456-20932781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):215, 30

               
               
               Conread position:50-384
               
               
               Cow position:chr14:23090549-23090215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 106

               
               
               Conread position:50-384
               
               
               Cow position:chr14:25986346-25986683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr14:26115891-26116227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):25, 129

               
               
               Conread position:50-384
               
               
               Cow position:chr14:38144276-38143946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):84, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr14:41210695-41211019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 72

               
               
               Conread position:50-384
               
               
               Cow position:chr14:42155136-42154798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 79

               
               
               Conread position:50-384
               
               
               Cow position:chr14:49824779-49824460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):205, 7

               
               
               Conread position:50-385
               
               
               Cow position:chr14:13845822-13846155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 73

               
               
               Conread position:50-411
               
               
               Cow position:chr14:1715562-1715925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):104, 7

               
               
               Conread position:51-332
               
               
               Cow position:chr14:29964851-29965131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):95, 136

               
               
               Conread position:51-368
               
               
               Cow position:chr14:12244547-12244232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):114, 6

               
               
               Conread position:51-382
               
               
               Cow position:chr14:36166775-36167102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):81, 13

               
               
               Conread position:52-278
               
               
               Cow position:chr14:29734524-29734303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 18

               
               
               Conread position:52-330
               
               
               Cow position:chr14:41486433-41486148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:52-378
               
               
               Cow position:chr14:41809819-41809496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):92, 26

               
               
               Conread position:52-380
               
               
               Cow position:chr14:27919899-27919576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):101, 12

               
               
               Conread position:52-384
               
               
               Cow position:chr14:16256610-16256932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):170, 12

               
               
               Conread position:52-384
               
               
               Cow position:chr14:18345888-18345568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 12

               
               
               Conread position:53-220
               
               
               Cow position:chr14:37504348-37504517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):75, 133

               
               
               Conread position:53-252
               
               
               Cow position:chr14:18412758-18412557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:53-255
               
               
               Cow position:chr14:22202293-22202091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):193, 11

               
               
               Conread position:53-271
               
               
               Cow position:chr14:5959158-5958933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:53-301
               
               
               Cow position:chr14:10937506-10937763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):103, 125

               
               
               Conread position:53-326
               
               
               Cow position:chr14:7636664-7636387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):13, 63

               
               
               Conread position:53-327
               
               
               Cow position:chr14:21224480-21224749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):168, 11

               
               
               Conread position:53-343
               
               
               Cow position:chr14:4282674-4282383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):91, 42

               
               
               Conread position:53-346
               
               
               Cow position:chr14:19193298-19193601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):91, 136

               
               
               Conread position:53-351
               
               
               Cow position:chr14:18485418-18485119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:53-369
               
               
               Cow position:chr14:11470314-11469997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):86, 123

               
               
               Conread position:53-378
               
               
               Cow position:chr14:40486807-40486494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):129, 234

               
               
               Conread position:53-383
               
               
               Cow position:chr14:44084640-44084313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):211, 68

               
               
               Conread position:53-384
               
               
               Cow position:chr14:14622332-14622008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):118, 75

               
               
               Conread position:53-384
               
               
               Cow position:chr14:24387287-24387614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):169, 38

               
               
               Conread position:53-384
               
               
               Cow position:chr14:40230799-40230472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):81, 41

               
               
               Conread position:53-384
               
               
               Cow position:chr14:48741030-48740705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):71, 34

               
               
               Conread position:53-384
               
               
               Cow position:chr14:48838427-48838761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 233

               
               
               Conread position:54-224
               
               
               Cow position:chr14:36151161-36151331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:54-250
               
               
               Cow position:chr14:27652997-27653196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 118

               
               
               Conread position:54-251
               
               
               Cow position:chr14:36559389-36559193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):119, 41

               
               
               Conread position:54-257
               
               
               Cow position:chr14:12763874-12763669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 112

               
               
               Conread position:54-274
               
               
               Cow position:chr14:13731261-13731041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 87

               
               
               Conread position:54-276
               
               
               Cow position:chr14:20245331-20245110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):205, 98

               
               
               Conread position:54-366
               
               
               Cow position:chr14:6541890-6541576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):109, 234

               
               
               Conread position:54-378
               
               
               Cow position:chr14:37103044-37103367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):134, 211

               
               
               Conread position:54-384
               
               
               Cow position:chr14:20826328-20826641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 90

               
               
               Conread position:55-225
               
               
               Cow position:chr14:25912492-25912658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:55-379
               
               
               Cow position:chr14:33247583-33247273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):18, 74

               
               
               Conread position:56-247
               
               
               Cow position:chr14:24428865-24428678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 70

               
               
               Conread position:56-252
               
               
               Cow position:chr14:47224533-47224332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):71, 177

               
               
               Conread position:56-274
               
               
               Cow position:chr14:27330571-27330799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 115

               
               
               Conread position:56-378
               
               
               Cow position:chr14:22941901-22941562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):77, 255

               
               
               Conread position:56-381
               
               
               Cow position:chr14:28115352-28115023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 128

               
               
               Conread position:56-385
               
               
               Cow position:chr14:34083309-34082986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):190, 19

               
               
               Conread position:57-220
               
               
               Cow position:chr14:11831959-11831787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:57-224
               
               
               Cow position:chr14:11604724-11604888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:57-252
               
               
               Cow position:chr14:18306032-18306238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:57-255
               
               
               Cow position:chr14:50519337-50519142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:57-257
               
               
               Cow position:chr14:8707396-8707588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:57-257
               
               
               Cow position:chr14:41156880-41156685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:57-267
               
               
               Cow position:chr14:28401647-28401857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 185

               
               
               Conread position:57-274
               
               
               Cow position:chr14:46977762-46977550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):183, 61

               
               
               Conread position:57-275
               
               
               Cow position:chr14:27733448-27733660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):207, 88

               
               
               Conread position:57-281
               
               
               Cow position:chr14:11576909-11577132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):207, 114

               
               
               Conread position:57-282
               
               
               Cow position:chr14:8688675-8688437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):114, 88

               
               
               Conread position:57-321
               
               
               Cow position:chr14:49487804-49488064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):201, 54

               
               
               Conread position:57-327
               
               
               Cow position:chr14:25225572-25225840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):207, 29

               
               
               Conread position:57-335
               
               
               Cow position:chr14:10851867-10852149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):87, 182

               
               
               Conread position:57-340
               
               
               Cow position:chr14:1796037-1796312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):207, 38

               
               
               Conread position:57-353
               
               
               Cow position:chr14:47170510-47170216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):207, 71

               
               
               Conread position:57-368
               
               
               Cow position:chr14:11056893-11056590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):81, 18

               
               
               Conread position:57-379
               
               
               Cow position:chr14:23442866-23443179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):207, 68

               
               
               Conread position:57-384
               
               
               Cow position:chr14:20667165-20666858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):207, 83

               
               
               Conread position:57-384
               
               
               Cow position:chr14:21933504-21933175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):84, 16

               
               
               Conread position:57-384
               
               
               Cow position:chr14:34200019-34199683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:246
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):69, 141

               
               
               Conread position:57-386
               
               
               Cow position:chr14:19852096-19851765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):79, 121

               
               
               Conread position:57-389
               
               
               Cow position:chr14:48772757-48773075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):209, 34

               
               
               Conread position:58-279
               
               
               Cow position:chr14:9510386-9510603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:58-303
               
               
               Cow position:chr14:28694878-28694632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:58-317
               
               
               Cow position:chr14:14318465-14318721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):89, 74

               
               
               Conread position:58-340
               
               
               Cow position:chr14:36443176-36442895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):206, 87

               
               
               Conread position:58-383
               
               
               Cow position:chr14:8101636-8101954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:58-383
               
               
               Cow position:chr14:33791034-33791351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 89

               
               
               Conread position:58-384
               
               
               Cow position:chr14:8946242-8945915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):198, 98

               
               
               Conread position:58-384
               
               
               Cow position:chr14:20010473-20010143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):67, 60

               
               
               Conread position:58-384
               
               
               Cow position:chr14:42330187-42330517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):92, 252

               
               
               Conread position:59-228
               
               
               Cow position:chr14:8949493-8949660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:59-231
               
               
               Cow position:chr14:19832551-19832380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):90, 35

               
               
               Conread position:59-231
               
               
               Cow position:chr14:26800138-26800312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 128

               
               
               Conread position:59-238
               
               
               Cow position:chr14:2937483-2937664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):69, 128

               
               
               Conread position:59-241
               
               
               Cow position:chr14:11079297-11079475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:59-241
               
               
               Cow position:chr14:11472389-11472205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):87, 128

               
               
               Conread position:59-250
               
               
               Cow position:chr14:8027725-8027527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):81, 132

               
               
               Conread position:59-258
               
               
               Cow position:chr14:41191255-41191055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 20

               
               
               Conread position:59-273
               
               
               Cow position:chr14:36775505-36775706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):207, 63

               
               
               Conread position:59-297
               
               
               Cow position:chr14:23419635-23419882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 118

               
               
               Conread position:59-300
               
               
               Cow position:chr14:6637387-6637155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 129

               
               
               Conread position:59-321
               
               
               Cow position:chr14:11643404-11643153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:59-321
               
               
               Cow position:chr14:23104154-23103893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):200, 79

               
               
               Conread position:59-331
               
               
               Cow position:chr14:27394622-27394350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):90, 67

               
               
               Conread position:59-333
               
               
               Cow position:chr14:6655747-6655466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):72, 97

               
               
               Conread position:59-343
               
               
               Cow position:chr14:12073114-12072825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):107, 92

               
               
               Conread position:59-346
               
               
               Cow position:chr14:33229558-33229268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):98, 84

               
               
               Conread position:59-384
               
               
               Cow position:chr14:23682109-23682429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):118, 87

               
               
               Conread position:59-384
               
               
               Cow position:chr14:28987531-28987858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):91, 181

               
               
               Conread position:59-384
               
               
               Cow position:chr14:38168546-38168848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):200, 62

               
               
               Conread position:59-385
               
               
               Cow position:chr14:8867719-8867395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):108, 67

               
               
               Conread position:60-228
               
               
               Cow position:chr14:15228388-15228550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:60-241
               
               
               Cow position:chr14:4481517-4481694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):117, 78

               
               
               Conread position:60-247
               
               
               Cow position:chr14:25979113-25979301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):118, 66

               
               
               Conread position:60-249
               
               
               Cow position:chr14:21530240-21530045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 170

               
               
               Conread position:60-255
               
               
               Cow position:chr14:35651937-35651748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):105, 82

               
               
               Conread position:60-274
               
               
               Cow position:chr14:11729264-11729053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):204, 80

               
               
               Conread position:60-303
               
               
               Cow position:chr14:16457349-16457602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):58, 14

               
               
               Conread position:60-368
               
               
               Cow position:chr14:45052281-45052590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):84, 131

               
               
               Conread position:60-378
               
               
               Cow position:chr14:26655294-26654973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):79, 127

               
               
               Conread position:60-379
               
               
               Cow position:chr14:10609522-10609845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):97, 35

               
               
               Conread position:60-382
               
               
               Cow position:chr14:33341592-33341922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):15, 89

               
               
               Conread position:60-383
               
               
               Cow position:chr14:35503206-35503528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 79

               
               
               Conread position:60-383
               
               
               Cow position:chr14:50362635-50362958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):81, 46

               
               
               Conread position:60-384
               
               
               Cow position:chr14:27355237-27355570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):29, 126

               
               
               Conread position:60-384
               
               
               Cow position:chr14:38378847-38379187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):76, 25

               
               
               Conread position:61-289
               
               
               Cow position:chr14:34775905-34775674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 126

               
               
               Conread position:61-332
               
               
               Cow position:chr14:12081282-12081024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):198, 74

               
               
               Conread position:61-378
               
               
               Cow position:chr14:40754400-40754085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):102, 77

               
               
               Conread position:61-384
               
               
               Cow position:chr14:39770377-39770067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):36, 56

               
               
               Conread position:62-296
               
               
               Cow position:chr14:12884109-12884342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):130, 95

               
               
               Conread position:62-343
               
               
               Cow position:chr14:7695109-7695392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:62-348
               
               
               Cow position:chr14:42419434-42419144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):62, 29

               
               
               Conread position:64-257
               
               
               Cow position:chr14:24785506-24785697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:64-384
               
               
               Cow position:chr14:16550147-16549838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 27

               
               
               Conread position:64-384
               
               
               Cow position:chr14:18309453-18309133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):107, 64

               
               
               Conread position:64-384
               
               
               Cow position:chr14:33714827-33714517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 121

               
               
               Conread position:65-272
               
               
               Cow position:chr14:20466784-20466985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):104, 94

               
               
               Conread position:65-383
               
               
               Cow position:chr14:23080906-23080599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):46, 82

               
               
               Conread position:66-325
               
               
               Cow position:chr14:37901849-37902107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):105, 61

               
               
               Conread position:67-382
               
               
               Cow position:chr14:26433399-26433080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 222

               
               
               Conread position:67-383
               
               
               Cow position:chr14:16760249-16760561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 77

               
               
               Conread position:68-230
               
               
               Cow position:chr14:20035569-20035734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 91

               
               
               Conread position:68-296
               
               
               Cow position:chr14:25227998-25228220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):199, 44

               
               
               Conread position:68-361
               
               
               Cow position:chr14:41302992-41302690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):66, 221

               
               
               Conread position:68-384
               
               
               Cow position:chr14:5630019-5630327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):195, 60

               
               
               Conread position:69-332
               
               
               Cow position:chr14:45312648-45312906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):95, 51

               
               
               Conread position:69-376
               
               
               Cow position:chr14:30756693-30757000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 108

               
               
               Conread position:69-379
               
               
               Cow position:chr14:16237658-16237346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):109, 36

               
               
               Conread position:70-417
               
               
               Cow position:chr14:46997905-46998241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):194, 51

               
               
               Conread position:72-231
               
               
               Cow position:chr14:20513082-20513243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):74, 106

               
               
               Conread position:72-237
               
               
               Cow position:chr14:11280258-11280094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:72-249
               
               
               Cow position:chr14:36425549-36425376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):120, 65

               
               
               Conread position:72-313
               
               
               Cow position:chr14:5553172-5553415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 113

               
               
               Conread position:72-358
               
               
               Cow position:chr14:48496292-48496009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 129

               
               
               Conread position:72-383
               
               
               Cow position:chr14:48426927-48427238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 148

               
               
               Conread position:72-384
               
               
               Cow position:chr14:12324261-12324591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):104, 20

               
               
               Conread position:72-384
               
               
               Cow position:chr14:12520449-12520142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):59, 116

               
               
               Conread position:73-384
               
               
               Cow position:chr14:27848035-27848364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):75, 22

               
               
               Conread position:74-340
               
               
               Cow position:chr14:26941364-26941098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):92, 77

               
               
               Conread position:75-238
               
               
               Cow position:chr14:44751168-44751007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:76-237
               
               
               Cow position:chr14:2759274-2759117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:81-332
               
               
               Cow position:chr14:15306264-15306009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):7, 48

               
               
               Conread position:82-384
               
               
               Cow position:chr14:1646319-1646026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 13

               
               
               Conread position:83-317
               
               
               Cow position:chr14:15404560-15404797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 103

               
               
               Conread position:86-348
               
               
               Cow position:chr14:11285448-11285705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:87-281
               
               
               Cow position:chr14:40191464-40191649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):177, 58

               
               
               Conread position:90-384
               
               
               Cow position:chr14:27076839-27077151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):54, 268

               
               
               Conread position:92-384
               
               
               Cow position:chr14:24607836-24608132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):85, 139

               
               
               Conread position:92-384
               
               
               Cow position:chr14:41479788-41479494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):74, 92

               
               
               Conread position:95-384
               
               
               Cow position:chr14:27305027-27305319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):145, 54

               
               
               Conread position:97-383
               
               
               Cow position:chr14:19188930-19189201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:97-384
               
               
               Cow position:chr14:19618872-19618586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):37, 56

               
               
               Conread position:98-384
               
               
               Cow position:chr14:37447587-37447303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 124

               
               
               Conread position:102-272
               
               
               Cow position:chr14:2541215-2541045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):141, 44

               
               
               Conread position:127-368
               
               
               Cow position:chr14:32553403-32553160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):17, 116

               
               
               Conread position:127-378
               
               
               Cow position:chr14:36555236-36554998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):137, 24

               
               
               Conread position:127-379
               
               
               Cow position:chr14:14316798-14317042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):137, 20

               
               
               Conread position:127-384
               
               
               Cow position:chr14:19394270-19394526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):7, 79

               
               
               Conread position:128-384
               
               
               Cow position:chr14:8749985-8750241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):16, 81

               
               
               Conread position:128-384
               
               
               Cow position:chr14:38338219-38337981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):136, 17

               
               
               Conread position:128-387
               
               
               Cow position:chr14:15055079-15054820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:193
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):136, 18

               
               
               Conread position:129-330
               
               
               Cow position:chr14:34096656-34096459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):17, 93

               
               
               Conread position:129-331
               
               
               Cow position:chr14:5557207-5557006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):135, 16

               
               
               Conread position:129-378
               
               
               Cow position:chr14:24981370-24981614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):135, 93

               
               
               Conread position:129-378
               
               
               Cow position:chr14:37884003-37883758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 23

               
               
               Conread position:129-383
               
               
               Cow position:chr14:39618467-39618210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 61

               
               
               Conread position:129-384
               
               
               Cow position:chr14:4990911-4991164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 222

               
               
               Conread position:129-384
               
               
               Cow position:chr14:33830213-33830463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):135, 93

               
               
               Conread position:129-384
               
               
               Cow position:chr14:45605009-45605257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):176, 70

               
               
               Conread position:129-403
               
               
               Cow position:chr14:18657696-18657420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):42, 58

               
               
               Conread position:130-378
               
               
               Cow position:chr14:1859698-1859456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):93, 22

               
               
               Conread position:130-399
               
               
               Cow position:chr14:1978163-1977891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 165

               
               
               Conread position:131-252
               
               
               Cow position:chr14:28706960-28707081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:131-311
               
               
               Cow position:chr14:45577179-45576999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):131, 149

               
               
               Conread position:131-379
               
               
               Cow position:chr14:42436938-42437187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):133, 108

               
               
               Conread position:131-379
               
               
               Cow position:chr14:49021984-49021742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-384
               
               
               Cow position:chr14:10631207-10630959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):27, 151

               
               
               Conread position:131-384
               
               
               Cow position:chr14:16032927-16033174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):133, 15

               
               
               Conread position:131-384
               
               
               Cow position:chr14:20600298-20600552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 170

               
               
               Conread position:131-384
               
               
               Cow position:chr14:29632969-29632720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):18, 61

               
               
               Conread position:131-384
               
               
               Cow position:chr14:34983782-34984029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):79, 21

               
               
               Conread position:131-384
               
               
               Cow position:chr14:37131577-37131821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:131-404
               
               
               Cow position:chr14:26097780-26097510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):128, 154

               
               
               Conread position:132-309
               
               
               Cow position:chr14:25333972-25334150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 152

               
               
               Conread position:132-379
               
               
               Cow position:chr14:12035327-12035568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):132, 15

               
               
               Conread position:132-384
               
               
               Cow position:chr14:25779017-25779257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):141, 19

               
               
               Conread position:133-377
               
               
               Cow position:chr14:19951483-19951728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):66, 19

               
               
               Conread position:133-387
               
               
               Cow position:chr14:46654624-46654376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 19

               
               
               Conread position:134-301
               
               
               Cow position:chr14:24913792-24913958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):131, 151

               
               
               Conread position:137-368
               
               
               Cow position:chr14:19359808-19360044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 10

               
               
               Conread position:137-384
               
               
               Cow position:chr14:9308150-9308392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):127, 14

               
               
               Conread position:139-309
               
               
               Cow position:chr14:3779258-3779429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):68, 15

               
               
               Conread position:142-337
               
               
               Cow position:chr14:19959810-19959616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):129, 145

               
               
               Conread position:142-384
               
               
               Cow position:chr14:40432850-40433086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:146-376
               
               
               Cow position:chr14:14187259-14187490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):26, 85

               
               
               Conread position:146-378
               
               
               Cow position:chr14:19863506-19863277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):26, 141

               
               
               Conread position:146-384
               
               
               Cow position:chr14:19372267-19372507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:147-353
               
               
               Cow position:chr14:16834251-16834460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:147-384
               
               
               Cow position:chr14:17841362-17841123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):119, 36

               
               
               Conread position:147-384
               
               
               Cow position:chr14:21691346-21691107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 41

               
               
               Conread position:147-384
               
               
               Cow position:chr14:38355117-38355351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):157, 105

               
               
               Conread position:148-271
               
               
               Cow position:chr14:40287522-40287646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:148-383
               
               
               Cow position:chr14:27592026-27591790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):116, 58

               
               
               Conread position:148-384
               
               
               Cow position:chr14:33309573-33309341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):116, 138

               
               
               Conread position:149-411
               
               
               Cow position:chr14:39775119-39774860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):117, 57

               
               
               Conread position:150-377
               
               
               Cow position:chr14:25404003-25403779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):106, 138

               
               
               Conread position:151-384
               
               
               Cow position:chr14:39778685-39778916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):112, 137

               
               
               Conread position:153-346
               
               
               Cow position:chr14:2833470-2833274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):114, 136

               
               
               Conread position:153-368
               
               
               Cow position:chr14:29698426-29698208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):60, 152

               
               
               Conread position:153-383
               
               
               Cow position:chr14:40165360-40165587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):111, 27

               
               
               Conread position:153-384
               
               
               Cow position:chr14:35018818-35018589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):111, 132

               
               
               Conread position:154-346
               
               
               Cow position:chr14:12127474-12127284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):100, 138

               
               
               Conread position:154-367
               
               
               Cow position:chr14:2038872-2038666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):110, 131

               
               
               Conread position:154-384
               
               
               Cow position:chr14:20385049-20384817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):110, 129

               
               
               Conread position:155-378
               
               
               Cow position:chr14:48412945-48412720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):109, 130

               
               
               Conread position:155-378
               
               
               Cow position:chr14:49086244-49086466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:161-303
               
               
               Cow position:chr14:49188889-49188743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:161-384
               
               
               Cow position:chr14:18904662-18904445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):98, 22

               
               
               Conread position:167-329
               
               
               Cow position:chr14:42480268-42480108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):134, 72

               
               
               Conread position:167-384
               
               
               Cow position:chr14:22966705-22966919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 16

               
               
               Conread position:178-366
               
               
               Cow position:chr14:3564244-3564429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 123

               
               
               Conread position:178-385
               
               
               Cow position:chr14:41325487-41325270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:180-384
               
               
               Cow position:chr14:24796471-24796261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:182-326
               
               
               Cow position:chr14:2345031-2345177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:185-378
               
               
               Cow position:chr14:5572910-5573100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 103

               
               
               Conread position:187-332
               
               
               Cow position:chr14:3162696-3162840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 105

               
               
               Conread position:193-384
               
               
               Cow position:chr14:25231675-25231479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:194-384
               
               
               Cow position:chr14:26191128-26190933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):66, 162

               
               
               Conread position:196-384
               
               
               Cow position:chr14:26490764-26490576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 65

               
               
               Conread position:200-384
               
               
               Cow position:chr14:17830894-17831077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):66, 139

               
               
               Conread position:207-378
               
               
               Cow position:chr14:21284617-21284783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):63, 15

               
               
               Conread position:213-378
               
               
               Cow position:chr14:33326400-33326235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):51, 76

               
               
               Conread position:223-383
               
               
               Cow position:chr14:33828167-33828326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 76

               
               
               Conread position:237-384
               
               
               Cow position:chr14:11820101-11819957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 48

               
               
               Conread position:1-325
               
               
               Cow position:chr15:8679925-8679597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):174, 19

               
               
               Conread position:1-384
               
               
               Cow position:chr15:20487374-20487000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:264
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:2-326
               
               
               Cow position:chr15:15177145-15177469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):54, 111

               
               
               Conread position:2-384
               
               
               Cow position:chr15:2380196-2380569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):33, 21

               
               
               Conread position:2-384
               
               
               Cow position:chr15:36435035-36435419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):144, 51

               
               
               Conread position:3-260
               
               
               Cow position:chr15:848479-848736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):31, 89

               
               
               Conread position:3-343
               
               
               Cow position:chr15:21803836-21803489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):25, 161

               
               
               Conread position:4-258
               
               
               Cow position:chr15:37070050-37069799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):142, 45

               
               
               Conread position:4-277
               
               
               Cow position:chr15:41475993-41475724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):62, 16

               
               
               Conread position:4-347
               
               
               Cow position:chr15:27230604-27230938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):150, 18

               
               
               Conread position:4-382
               
               
               Cow position:chr15:32324372-32323996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:5-384
               
               
               Cow position:chr15:7429800-7430190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):41, 18

               
               
               Conread position:6-231
               
               
               Cow position:chr15:48818889-48819105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):15, 24

               
               
               Conread position:8-343
               
               
               Cow position:chr15:34139822-34140157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):108, 68

               
               
               Conread position:8-379
               
               
               Cow position:chr15:17195985-17196348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):141, 66

               
               
               Conread position:9-384
               
               
               Cow position:chr15:36259761-36259390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 112

               
               
               Conread position:11-332
               
               
               Cow position:chr15:26522981-26522674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):155, 17

               
               
               Conread position:13-156
               
               
               Cow position:chr15:10721339-10721198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:13-272
               
               
               Cow position:chr15:22444138-22443886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):159, 14

               
               
               Conread position:14-383
               
               
               Cow position:chr15:16261174-16261525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):250, 130

               
               
               Conread position:20-282
               
               
               Cow position:chr15:7751065-7750799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 169

               
               
               Conread position:20-332
               
               
               Cow position:chr15:41053916-41053606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):117, 31

               
               
               Conread position:25-352
               
               
               Cow position:chr15:49950514-49950838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 39

               
               
               Conread position:25-378
               
               
               Cow position:chr15:4677143-4676801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):90, 136

               
               
               Conread position:26-252
               
               
               Cow position:chr15:42704658-42704880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):147, 22

               
               
               Conread position:26-332
               
               
               Cow position:chr15:31283239-31283536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):128, 50

               
               
               Conread position:26-343
               
               
               Cow position:chr15:43114859-43114550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):139, 41

               
               
               Conread position:26-368
               
               
               Cow position:chr15:14740834-14740487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):9, 131

               
               
               Conread position:27-384
               
               
               Cow position:chr15:21608865-21608511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):117, 37

               
               
               Conread position:27-384
               
               
               Cow position:chr15:31137607-31137252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):232, 10

               
               
               Conread position:28-384
               
               
               Cow position:chr15:26912211-26911866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):33, 66

               
               
               Conread position:29-285
               
               
               Cow position:chr15:24462377-24462642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 162

               
               
               Conread position:29-373
               
               
               Cow position:chr15:21832583-21832226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):57, 8

               
               
               Conread position:29-378
               
               
               Cow position:chr15:30985918-30985582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 71

               
               
               Conread position:29-384
               
               
               Cow position:chr15:11987557-11987196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):39, 131

               
               
               Conread position:30-292
               
               
               Cow position:chr15:19002420-19002158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):91, 32

               
               
               Conread position:30-367
               
               
               Cow position:chr15:20459451-20459109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):116, 274

               
               
               Conread position:30-384
               
               
               Cow position:chr15:38806645-38806286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:31-238
               
               
               Cow position:chr15:18941897-18942096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:31-252
               
               
               Cow position:chr15:16246455-16246677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:31-368
               
               
               Cow position:chr15:5984727-5984398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 134

               
               
               Conread position:31-368
               
               
               Cow position:chr15:23180303-23180631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):55, 33

               
               
               Conread position:31-377
               
               
               Cow position:chr15:32241824-32242179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):20, 167

               
               
               Conread position:31-378
               
               
               Cow position:chr15:32980171-32979833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:31-378
               
               
               Cow position:chr15:51427966-51427617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):19, 35

               
               
               Conread position:31-383
               
               
               Cow position:chr15:43914240-43913876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):9, 158

               
               
               Conread position:31-384
               
               
               Cow position:chr15:286330-286691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):12, 303

               
               
               Conread position:32-328
               
               
               Cow position:chr15:13395416-13395707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):95, 25

               
               
               Conread position:32-332
               
               
               Cow position:chr15:36846326-36846014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):29, 202

               
               
               Conread position:32-366
               
               
               Cow position:chr15:14474204-14474532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):140, 21

               
               
               Conread position:33-221
               
               
               Cow position:chr15:10199196-10199379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:33-230
               
               
               Cow position:chr15:13846700-13846509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):138, 30

               
               
               Conread position:33-348
               
               
               Cow position:chr15:18647261-18647554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):15, 70

               
               
               Conread position:33-355
               
               
               Cow position:chr15:16017896-16018219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):121, 153

               
               
               Conread position:33-378
               
               
               Cow position:chr15:43031161-43030821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):103, 20

               
               
               Conread position:33-384
               
               
               Cow position:chr15:8006839-8007194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):27, 129

               
               
               Conread position:34-244
               
               
               Cow position:chr15:48052737-48052531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 60

               
               
               Conread position:34-252
               
               
               Cow position:chr15:12045678-12045456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 145

               
               
               Conread position:34-367
               
               
               Cow position:chr15:19807858-19807522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):102, 30

               
               
               Conread position:34-368
               
               
               Cow position:chr15:6233150-6232819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):174, 30

               
               
               Conread position:34-378
               
               
               Cow position:chr15:20472678-20472345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):225, 19

               
               
               Conread position:34-384
               
               
               Cow position:chr15:26158737-26158404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:253
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):27, 124

               
               
               Conread position:35-273
               
               
               Cow position:chr15:16271315-16271556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):118, 91

               
               
               Conread position:35-378
               
               
               Cow position:chr15:22930484-22930138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):127, 30

               
               
               Conread position:36-208
               
               
               Cow position:chr15:27280509-27280676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):108, 20

               
               
               Conread position:36-332
               
               
               Cow position:chr15:12203409-12203711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:36-382
               
               
               Cow position:chr15:46563611-46563282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:36-384
               
               
               Cow position:chr15:38883014-38883365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):99, 21

               
               
               Conread position:37-302
               
               
               Cow position:chr15:10881011-10880750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):132, 19

               
               
               Conread position:37-309
               
               
               Cow position:chr15:36388168-36388430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):229, 16

               
               
               Conread position:37-339
               
               
               Cow position:chr15:14987862-14988157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 84

               
               
               Conread position:37-378
               
               
               Cow position:chr15:38394296-38394624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:37-384
               
               
               Cow position:chr15:18671585-18671240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 63

               
               
               Conread position:37-384
               
               
               Cow position:chr15:20422897-20422566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):229, 28

               
               
               Conread position:38-187
               
               
               Cow position:chr15:29354106-29353959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):97, 45

               
               
               Conread position:38-340
               
               
               Cow position:chr15:24453204-24452906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):102, 15

               
               
               Conread position:38-343
               
               
               Cow position:chr15:15987024-15986711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):92, 15

               
               
               Conread position:38-352
               
               
               Cow position:chr15:39833108-39832795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):150, 15

               
               
               Conread position:38-368
               
               
               Cow position:chr15:8665739-8665395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):89, 143

               
               
               Conread position:38-373
               
               
               Cow position:chr15:27973340-27973016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):19, 85

               
               
               Conread position:38-376
               
               
               Cow position:chr15:23798651-23798325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):221, 15

               
               
               Conread position:38-384
               
               
               Cow position:chr15:19186755-19186406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):59, 180

               
               
               Conread position:38-384
               
               
               Cow position:chr15:27900635-27900296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):225, 15

               
               
               Conread position:39-383
               
               
               Cow position:chr15:52482960-52482618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:39-383
               
               
               Cow position:chr15:53163889-53164231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:39-384
               
               
               Cow position:chr15:4295631-4295977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):109, 14

               
               
               Conread position:39-384
               
               
               Cow position:chr15:25585228-25584880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 25

               
               
               Conread position:40-341
               
               
               Cow position:chr15:41625030-41624717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):21, 149

               
               
               Conread position:40-384
               
               
               Cow position:chr15:20370581-20370244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):208, 24

               
               
               Conread position:40-411
               
               
               Cow position:chr15:38161865-38162246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:261
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):23, 59

               
               
               Conread position:41-368
               
               
               Cow position:chr15:6462621-6462301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):224, 15

               
               
               Conread position:41-378
               
               
               Cow position:chr15:20314350-20314690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):19, 149

               
               
               Conread position:41-384
               
               
               Cow position:chr15:795144-794804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):221, 11

               
               
               Conread position:41-384
               
               
               Cow position:chr15:26079474-26079151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):9, 31

               
               
               Conread position:41-387
               
               
               Cow position:chr15:19771007-19771349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):23, 116

               
               
               Conread position:42-302
               
               
               Cow position:chr15:31637164-31637433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):24, 260

               
               
               Conread position:42-384
               
               
               Cow position:chr15:41125691-41125358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:43-301
               
               
               Cow position:chr15:47844215-47843962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):221, 43

               
               
               Conread position:43-374
               
               
               Cow position:chr15:37865233-37865568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):101, 33

               
               
               Conread position:44-253
               
               
               Cow position:chr15:44089291-44089080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):102, 127

               
               
               Conread position:44-271
               
               
               Cow position:chr15:35577068-35577304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):83, 20

               
               
               Conread position:44-274
               
               
               Cow position:chr15:44671466-44671231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):77, 50

               
               
               Conread position:44-321
               
               
               Cow position:chr15:16530897-16530624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):105, 132

               
               
               Conread position:44-332
               
               
               Cow position:chr15:39299442-39299160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):138, 20

               
               
               Conread position:44-382
               
               
               Cow position:chr15:39598118-39598453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 85

               
               
               Conread position:45-295
               
               
               Cow position:chr15:21903531-21903284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):110, 12

               
               
               Conread position:46-394
               
               
               Cow position:chr15:36391547-36391898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):90, 134

               
               
               Conread position:47-368
               
               
               Cow position:chr15:11560637-11560318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):122, 17

               
               
               Conread position:47-368
               
               
               Cow position:chr15:16439956-16439635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):130, 17

               
               
               Conread position:47-384
               
               
               Cow position:chr15:6168655-6168306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):106, 18

               
               
               Conread position:48-316
               
               
               Cow position:chr15:32234434-32234186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:48-329
               
               
               Cow position:chr15:4694630-4694903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):105, 9

               
               
               Conread position:48-337
               
               
               Cow position:chr15:40015126-40014834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:48-343
               
               
               Cow position:chr15:40230997-40231288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):89, 17

               
               
               Conread position:48-344
               
               
               Cow position:chr15:41023742-41023449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:48-378
               
               
               Cow position:chr15:33284755-33285085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:48-384
               
               
               Cow position:chr15:14505325-14505638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:48-384
               
               
               Cow position:chr15:17870413-17870073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:48-384
               
               
               Cow position:chr15:28924883-28924550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:48-384
               
               
               Cow position:chr15:29027005-29026668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):101, 120

               
               
               Conread position:48-384
               
               
               Cow position:chr15:36887718-36888036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:49-236
               
               
               Cow position:chr15:40844744-40844554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):16, 76

               
               
               Conread position:49-246
               
               
               Cow position:chr15:18704056-18703857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):15, 79

               
               
               Conread position:49-309
               
               
               Cow position:chr15:11909068-11908811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):217, 150

               
               
               Conread position:49-382
               
               
               Cow position:chr15:44658245-44658568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):115, 78

               
               
               Conread position:49-383
               
               
               Cow position:chr15:1722962-1722639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 78

               
               
               Conread position:49-384
               
               
               Cow position:chr15:45584600-45584934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):17, 182

               
               
               Conread position:49-394
               
               
               Cow position:chr15:34478566-34478918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 138

               
               
               Conread position:50-213
               
               
               Cow position:chr15:26380866-26380702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:50-217
               
               
               Cow position:chr15:27656981-27657151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):77, 107

               
               
               Conread position:50-225
               
               
               Cow position:chr15:4284251-4284428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):97, 128

               
               
               Conread position:50-229
               
               
               Cow position:chr15:26849652-26849479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:50-231
               
               
               Cow position:chr15:40562803-40562622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):115, 142

               
               
               Conread position:50-243
               
               
               Cow position:chr15:44809947-44810141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:50-246
               
               
               Cow position:chr15:46284036-46283842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:50-249
               
               
               Cow position:chr15:25358113-25358313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):98, 136

               
               
               Conread position:50-249
               
               
               Cow position:chr15:25451880-25452088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:50-254
               
               
               Cow position:chr15:44977694-44977899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):93, 23

               
               
               Conread position:50-255
               
               
               Cow position:chr15:52791820-52792021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):77, 131

               
               
               Conread position:50-263
               
               
               Cow position:chr15:10153551-10153757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):96, 161

               
               
               Conread position:50-272
               
               
               Cow position:chr15:31495337-31495122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:50-282
               
               
               Cow position:chr15:49131938-49132170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):15, 90

               
               
               Conread position:50-287
               
               
               Cow position:chr15:9879502-9879260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:50-320
               
               
               Cow position:chr15:11614214-11613941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:50-321
               
               
               Cow position:chr15:52316940-52317208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):215, 76

               
               
               Conread position:50-327
               
               
               Cow position:chr15:3695518-3695790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 7

               
               
               Conread position:50-334
               
               
               Cow position:chr15:19554046-19553761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):99, 246

               
               
               Conread position:50-351
               
               
               Cow position:chr15:20390830-20390527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):101, 41

               
               
               Conread position:50-367
               
               
               Cow position:chr15:19950364-19950669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:50-368
               
               
               Cow position:chr15:24616448-24616768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):127, 14

               
               
               Conread position:50-368
               
               
               Cow position:chr15:34284526-34284215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):122, 15

               
               
               Conread position:50-371
               
               
               Cow position:chr15:4919190-4918867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):78, 144

               
               
               Conread position:50-371
               
               
               Cow position:chr15:6905419-6905734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):116, 77

               
               
               Conread position:50-378
               
               
               Cow position:chr15:28823932-28823616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):205, 44

               
               
               Conread position:50-378
               
               
               Cow position:chr15:37381509-37381828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:50-383
               
               
               Cow position:chr15:45549-45205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):13, 57

               
               
               Conread position:50-383
               
               
               Cow position:chr15:21420827-21421150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):142, 44

               
               
               Conread position:50-384
               
               
               Cow position:chr15:608023-608359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):100, 139

               
               
               Conread position:50-384
               
               
               Cow position:chr15:2968214-2968549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):99, 134

               
               
               Conread position:50-384
               
               
               Cow position:chr15:3700406-3700073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):13, 80

               
               
               Conread position:50-384
               
               
               Cow position:chr15:4138013-4138346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):21, 163

               
               
               Conread position:50-384
               
               
               Cow position:chr15:4418522-4418188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):116, 239

               
               
               Conread position:50-384
               
               
               Cow position:chr15:5235111-5234791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):214, 56

               
               
               Conread position:50-384
               
               
               Cow position:chr15:6227295-6226977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr15:12304518-12304854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 110

               
               
               Conread position:50-384
               
               
               Cow position:chr15:16822829-16823150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:50-384
               
               
               Cow position:chr15:17084086-17084421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):87, 292

               
               
               Conread position:50-384
               
               
               Cow position:chr15:21822047-21821712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):97, 237

               
               
               Conread position:50-384
               
               
               Cow position:chr15:25667347-25667010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):10, 139

               
               
               Conread position:50-384
               
               
               Cow position:chr15:35641890-35642233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):11, 135

               
               
               Conread position:50-384
               
               
               Cow position:chr15:36353546-36353881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 105

               
               
               Conread position:50-384
               
               
               Cow position:chr15:40957457-40957790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):15, 133

               
               
               Conread position:50-384
               
               
               Cow position:chr15:42142753-42143069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):214, 100

               
               
               Conread position:51-368
               
               
               Cow position:chr15:23780189-23779875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 6

               
               
               Conread position:51-377
               
               
               Cow position:chr15:47042764-47042429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:247
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):11, 256

               
               
               Conread position:51-384
               
               
               Cow position:chr15:12722965-12723300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):75, 215

               
               
               Conread position:51-384
               
               
               Cow position:chr15:16603710-16604035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):22, 29

               
               
               Conread position:51-384
               
               
               Cow position:chr15:49273843-49274164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 77

               
               
               Conread position:52-176
               
               
               Cow position:chr15:16492335-16492460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:52-220
               
               
               Cow position:chr15:840265-840099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:52-237
               
               
               Cow position:chr15:46059238-46059428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:52-272
               
               
               Cow position:chr15:6037565-6037353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):14, 72

               
               
               Conread position:52-330
               
               
               Cow position:chr15:41056325-41056046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):67, 20

               
               
               Conread position:52-378
               
               
               Cow position:chr15:5409011-5408697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):211, 12

               
               
               Conread position:52-382
               
               
               Cow position:chr15:53716316-53716643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 96

               
               
               Conread position:52-384
               
               
               Cow position:chr15:225920-225593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):80, 21

               
               
               Conread position:52-384
               
               
               Cow position:chr15:11996146-11995813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 114

               
               
               Conread position:52-384
               
               
               Cow position:chr15:24982297-24981980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):71, 95

               
               
               Conread position:52-384
               
               
               Cow position:chr15:50322492-50322808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):13, 56

               
               
               Conread position:53-176
               
               
               Cow position:chr15:23085256-23085373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:53-231
               
               
               Cow position:chr15:33897705-33897884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:53-241
               
               
               Cow position:chr15:21520023-21520221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:53-256
               
               
               Cow position:chr15:43715211-43715412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 91

               
               
               Conread position:53-257
               
               
               Cow position:chr15:41534537-41534736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 76

               
               
               Conread position:53-268
               
               
               Cow position:chr15:26529779-26529988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):211, 21

               
               
               Conread position:53-271
               
               
               Cow position:chr15:26896816-26896594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:53-272
               
               
               Cow position:chr15:15154182-15154402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):91, 38

               
               
               Conread position:53-288
               
               
               Cow position:chr15:30316677-30316449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):222, 44

               
               
               Conread position:53-298
               
               
               Cow position:chr15:42380811-42381053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 38

               
               
               Conread position:53-301
               
               
               Cow position:chr15:50332858-50333110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:192
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):74, 104

               
               
               Conread position:53-308
               
               
               Cow position:chr15:697863-698120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):99, 11

               
               
               Conread position:53-327
               
               
               Cow position:chr15:38827432-38827169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):211, 69

               
               
               Conread position:53-328
               
               
               Cow position:chr15:36952316-36952043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 38

               
               
               Conread position:53-331
               
               
               Cow position:chr15:25571928-25571648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):101, 20

               
               
               Conread position:53-332
               
               
               Cow position:chr15:31028776-31028496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):129, 11

               
               
               Conread position:53-344
               
               
               Cow position:chr15:10442628-10442331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):68, 206

               
               
               Conread position:53-351
               
               
               Cow position:chr15:35425909-35425634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):211, 75

               
               
               Conread position:53-352
               
               
               Cow position:chr15:5719922-5719627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 66

               
               
               Conread position:53-357
               
               
               Cow position:chr15:52902-53213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 121

               
               
               Conread position:53-368
               
               
               Cow position:chr15:23114717-23115036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):135, 19

               
               
               Conread position:53-382
               
               
               Cow position:chr15:22531556-22531867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:53-384
               
               
               Cow position:chr15:1083487-1083163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):212, 38

               
               
               Conread position:53-384
               
               
               Cow position:chr15:21893662-21893994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):13, 100

               
               
               Conread position:53-384
               
               
               Cow position:chr15:24031079-24031399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):30, 108

               
               
               Conread position:53-384
               
               
               Cow position:chr15:25208876-25208556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 225

               
               
               Conread position:53-384
               
               
               Cow position:chr15:33178544-33178212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):13, 80

               
               
               Conread position:53-384
               
               
               Cow position:chr15:47821716-47822021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):213, 74

               
               
               Conread position:53-385
               
               
               Cow position:chr15:53037079-53036754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):211, 88

               
               
               Conread position:53-390
               
               
               Cow position:chr15:45245657-45245320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):106, 11

               
               
               Conread position:54-220
               
               
               Cow position:chr15:24124607-24124782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:54-267
               
               
               Cow position:chr15:4500582-4500801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:54-304
               
               
               Cow position:chr15:49483510-49483759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 109

               
               
               Conread position:54-308
               
               
               Cow position:chr15:40834999-40835251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):221, 92

               
               
               Conread position:54-378
               
               
               Cow position:chr15:45478883-45479210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):92, 122

               
               
               Conread position:54-384
               
               
               Cow position:chr15:19402889-19403194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):69, 103

               
               
               Conread position:54-384
               
               
               Cow position:chr15:26919385-26919065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):117, 41

               
               
               Conread position:55-201
               
               
               Cow position:chr15:1500715-1500858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:55-201
               
               
               Cow position:chr15:1508241-1508384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:55-201
               
               
               Cow position:chr15:2378328-2378471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:55-383
               
               
               Cow position:chr15:14576212-14576546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 40

               
               
               Conread position:55-384
               
               
               Cow position:chr15:1502798-1503117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):207, 90

               
               
               Conread position:55-384
               
               
               Cow position:chr15:50350727-50351039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 167

               
               
               Conread position:56-241
               
               
               Cow position:chr15:52747412-52747593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 65

               
               
               Conread position:56-249
               
               
               Cow position:chr15:21942938-21943133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):91, 131

               
               
               Conread position:56-252
               
               
               Cow position:chr15:12974220-12974420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):82, 128

               
               
               Conread position:56-260
               
               
               Cow position:chr15:15992755-15992554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):70, 39

               
               
               Conread position:56-348
               
               
               Cow position:chr15:29686448-29686729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):225, 35

               
               
               Conread position:56-378
               
               
               Cow position:chr15:16928203-16927891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):208, 20

               
               
               Conread position:56-382
               
               
               Cow position:chr15:16112280-16112612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 136

               
               
               Conread position:56-384
               
               
               Cow position:chr15:6969872-6970195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):18, 36

               
               
               Conread position:56-384
               
               
               Cow position:chr15:7456603-7456910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):251, 72

               
               
               Conread position:56-384
               
               
               Cow position:chr15:17100818-17100497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):214, 63

               
               
               Conread position:56-384
               
               
               Cow position:chr15:22938881-22938557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):88, 129

               
               
               Conread position:57-204
               
               
               Cow position:chr15:47920260-47920117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):121, 82

               
               
               Conread position:57-220
               
               
               Cow position:chr15:49230426-49230268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 103

               
               
               Conread position:57-255
               
               
               Cow position:chr15:28098998-28099196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:159
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:57-262
               
               
               Cow position:chr15:34223754-34223957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):23, 35

               
               
               Conread position:57-282
               
               
               Cow position:chr15:2931684-2931454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):75, 92

               
               
               Conread position:57-297
               
               
               Cow position:chr15:20950139-20950380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):110, 116

               
               
               Conread position:57-305
               
               
               Cow position:chr15:8636407-8636159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):92, 69

               
               
               Conread position:57-347
               
               
               Cow position:chr15:41528079-41527802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):207, 43

               
               
               Conread position:57-378
               
               
               Cow position:chr15:5158258-5158581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):70, 115

               
               
               Conread position:57-378
               
               
               Cow position:chr15:5683024-5683347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):75, 69

               
               
               Conread position:57-378
               
               
               Cow position:chr15:38037058-38036735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):74, 21

               
               
               Conread position:57-378
               
               
               Cow position:chr15:49922022-49922343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):44, 35

               
               
               Conread position:57-384
               
               
               Cow position:chr15:9648802-9648492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):207, 62

               
               
               Conread position:57-384
               
               
               Cow position:chr15:22532140-22532450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 89

               
               
               Conread position:57-384
               
               
               Cow position:chr15:22553654-22553330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 94

               
               
               Conread position:57-384
               
               
               Cow position:chr15:30001583-30001898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):313, 70

               
               
               Conread position:57-384
               
               
               Cow position:chr15:30471092-30470757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:57-384
               
               
               Cow position:chr15:43626351-43626681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):23, 248

               
               
               Conread position:58-211
               
               
               Cow position:chr15:14883563-14883713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:58-235
               
               
               Cow position:chr15:40082876-40083049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:58-247
               
               
               Cow position:chr15:44058299-44058108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):31, 124

               
               
               Conread position:58-254
               
               
               Cow position:chr15:4735738-4735554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:58-258
               
               
               Cow position:chr15:48326340-48326144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):30, 97

               
               
               Conread position:58-271
               
               
               Cow position:chr15:39474047-39473834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):76, 162

               
               
               Conread position:58-343
               
               
               Cow position:chr15:36635917-36636211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 121

               
               
               Conread position:58-378
               
               
               Cow position:chr15:24804912-24804585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):96, 113

               
               
               Conread position:58-379
               
               
               Cow position:chr15:5717607-5717917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):205, 69

               
               
               Conread position:58-383
               
               
               Cow position:chr15:50341006-50341332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):68, 34

               
               
               Conread position:58-384
               
               
               Cow position:chr15:14870643-14870955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 59

               
               
               Conread position:58-384
               
               
               Cow position:chr15:22939436-22939112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):206, 66

               
               
               Conread position:58-384
               
               
               Cow position:chr15:30986398-30986073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):208, 60

               
               
               Conread position:58-384
               
               
               Cow position:chr15:39599337-39599654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):99, 36

               
               
               Conread position:58-442
               
               
               Cow position:chr15:43674058-43673666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 59

               
               
               Conread position:59-217
               
               
               Cow position:chr15:53006046-53005893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:59-238
               
               
               Cow position:chr15:17124582-17124401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):97, 131

               
               
               Conread position:59-238
               
               
               Cow position:chr15:19976436-19976618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:59-249
               
               
               Cow position:chr15:20566806-20566990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:59-249
               
               
               Cow position:chr15:21710220-21710029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):87, 20

               
               
               Conread position:59-249
               
               
               Cow position:chr15:29927853-29928043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):90, 130

               
               
               Conread position:59-252
               
               
               Cow position:chr15:44119580-44119390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):85, 46

               
               
               Conread position:59-255
               
               
               Cow position:chr15:25595638-25595444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):90, 46

               
               
               Conread position:59-296
               
               
               Cow position:chr15:9978992-9979226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):200, 38

               
               
               Conread position:59-309
               
               
               Cow position:chr15:275532-275793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):56, 172

               
               
               Conread position:59-332
               
               
               Cow position:chr15:42888946-42888677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):85, 128

               
               
               Conread position:59-348
               
               
               Cow position:chr15:38652714-38652440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):87, 119

               
               
               Conread position:59-351
               
               
               Cow position:chr15:10400386-10400091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):90, 131

               
               
               Conread position:59-368
               
               
               Cow position:chr15:29810014-29810314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):205, 86

               
               
               Conread position:59-379
               
               
               Cow position:chr15:20391388-20391067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 37

               
               
               Conread position:59-379
               
               
               Cow position:chr15:48851604-48851284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):85, 124

               
               
               Conread position:59-383
               
               
               Cow position:chr15:47990877-47990553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):90, 127

               
               
               Conread position:59-384
               
               
               Cow position:chr15:662575-662256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):205, 69

               
               
               Conread position:59-384
               
               
               Cow position:chr15:1857615-1857940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):112, 51

               
               
               Conread position:59-384
               
               
               Cow position:chr15:10231854-10231529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):207, 67

               
               
               Conread position:59-384
               
               
               Cow position:chr15:31857478-31857801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):78, 57

               
               
               Conread position:59-384
               
               
               Cow position:chr15:40798529-40798216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):85, 36

               
               
               Conread position:59-387
               
               
               Cow position:chr15:10457139-10456797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):67, 166

               
               
               Conread position:60-225
               
               
               Cow position:chr15:27975983-27975817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):76, 13

               
               
               Conread position:60-235
               
               
               Cow position:chr15:8331307-8331138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:60-253
               
               
               Cow position:chr15:20566018-20566209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 158

               
               
               Conread position:60-343
               
               
               Cow position:chr15:13432372-13432665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:60-369
               
               
               Cow position:chr15:49784391-49784093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):204, 85

               
               
               Conread position:60-376
               
               
               Cow position:chr15:31929008-31928694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 226

               
               
               Conread position:60-377
               
               
               Cow position:chr15:17233076-17233397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):59, 244

               
               
               Conread position:60-377
               
               
               Cow position:chr15:23572799-23572480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):86, 111

               
               
               Conread position:60-378
               
               
               Cow position:chr15:8427902-8428219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):186, 31

               
               
               Conread position:60-378
               
               
               Cow position:chr15:21366300-21365990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):199, 26

               
               
               Conread position:60-379
               
               
               Cow position:chr15:20534563-20534244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):87, 274

               
               
               Conread position:60-384
               
               
               Cow position:chr15:10088209-10088532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 74

               
               
               Conread position:60-384
               
               
               Cow position:chr15:30047664-30047330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:60-384
               
               
               Cow position:chr15:43827882-43827561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):89, 129

               
               
               Conread position:60-384
               
               
               Cow position:chr15:44377161-44377488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 26

               
               
               Conread position:61-216
               
               
               Cow position:chr15:22242293-22242449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:61-229
               
               
               Cow position:chr15:40000817-40000979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 66

               
               
               Conread position:61-378
               
               
               Cow position:chr15:18975872-18975562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 30

               
               
               Conread position:61-382
               
               
               Cow position:chr15:20081665-20081967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 67

               
               
               Conread position:61-383
               
               
               Cow position:chr15:52611178-52611521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 243

               
               
               Conread position:61-385
               
               
               Cow position:chr15:10246104-10245791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):97, 81

               
               
               Conread position:61-388
               
               
               Cow position:chr15:39326610-39326294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):143, 67

               
               
               Conread position:62-220
               
               
               Cow position:chr15:5710304-5710451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:62-255
               
               
               Cow position:chr15:5690994-5691182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:62-304
               
               
               Cow position:chr15:26851332-26851092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):159, 65

               
               
               Conread position:62-353
               
               
               Cow position:chr15:50552642-50552347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):84, 121

               
               
               Conread position:62-382
               
               
               Cow position:chr15:5726207-5726535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):75, 23

               
               
               Conread position:62-382
               
               
               Cow position:chr15:51307778-51307469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 60

               
               
               Conread position:62-383
               
               
               Cow position:chr15:11658691-11658357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 250

               
               
               Conread position:62-384
               
               
               Cow position:chr15:21907836-21908148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):209, 18

               
               
               Conread position:63-282
               
               
               Cow position:chr15:26442107-26442327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):201, 0

               
               
               Conread position:63-376
               
               
               Cow position:chr15:24967694-24967993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):219, 77

               
               
               Conread position:64-241
               
               
               Cow position:chr15:12913605-12913428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-252
               
               
               Cow position:chr15:14964266-14964086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:64-282
               
               
               Cow position:chr15:27063623-27063409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):195, 22

               
               
               Conread position:64-328
               
               
               Cow position:chr15:38860238-38859972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):90, 203

               
               
               Conread position:64-383
               
               
               Cow position:chr15:16667604-16667291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):80, 143

               
               
               Conread position:64-384
               
               
               Cow position:chr15:24994617-24994308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 22

               
               
               Conread position:65-332
               
               
               Cow position:chr15:1989998-1990268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 24

               
               
               Conread position:65-384
               
               
               Cow position:chr15:11011698-11011392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):199, 40

               
               
               Conread position:68-384
               
               
               Cow position:chr15:244680-244989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:68-384
               
               
               Cow position:chr15:1330211-1329890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 226

               
               
               Conread position:69-346
               
               
               Cow position:chr15:23901478-23901190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 237

               
               
               Conread position:69-368
               
               
               Cow position:chr15:85347-85054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):68, 83

               
               
               Conread position:71-339
               
               
               Cow position:chr15:16664182-16664458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 116

               
               
               Conread position:72-262
               
               
               Cow position:chr15:10049412-10049222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):68, 153

               
               
               Conread position:72-332
               
               
               Cow position:chr15:5657719-5658000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):55, 216

               
               
               Conread position:72-332
               
               
               Cow position:chr15:13783066-13782807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):72, 116

               
               
               Conread position:72-333
               
               
               Cow position:chr15:36776171-36776434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):74, 104

               
               
               Conread position:72-364
               
               
               Cow position:chr15:9465576-9465870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):72, 105

               
               
               Conread position:72-364
               
               
               Cow position:chr15:25906820-25907110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):192, 69

               
               
               Conread position:72-366
               
               
               Cow position:chr15:7308256-7307961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):69, 86

               
               
               Conread position:72-366
               
               
               Cow position:chr15:11424875-11425167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):82, 104

               
               
               Conread position:72-373
               
               
               Cow position:chr15:24797901-24797610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):192, 66

               
               
               Conread position:72-373
               
               
               Cow position:chr15:40379114-40379413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 115

               
               
               Conread position:72-378
               
               
               Cow position:chr15:11559450-11559149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):93, 22

               
               
               Conread position:72-383
               
               
               Cow position:chr15:1297648-1297950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:72-384
               
               
               Cow position:chr15:4485050-4485354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):72, 193

               
               
               Conread position:72-384
               
               
               Cow position:chr15:4862005-4861701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):75, 114

               
               
               Conread position:72-384
               
               
               Cow position:chr15:5420980-5420672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 69

               
               
               Conread position:72-384
               
               
               Cow position:chr15:16543536-16543245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):192, 20

               
               
               Conread position:72-384
               
               
               Cow position:chr15:33306022-33306322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:72-384
               
               
               Cow position:chr15:34896663-34896975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):40, 77

               
               
               Conread position:73-378
               
               
               Cow position:chr15:35112970-35112675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):179, 21

               
               
               Conread position:73-383
               
               
               Cow position:chr15:26903096-26903408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):193, 53

               
               
               Conread position:73-384
               
               
               Cow position:chr15:23275436-23275747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 212

               
               
               Conread position:73-384
               
               
               Cow position:chr15:30981855-30982137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):191, 29

               
               
               Conread position:74-279
               
               
               Cow position:chr15:921656-921854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):65, 30

               
               
               Conread position:74-336
               
               
               Cow position:chr15:13701868-13701603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):80, 112

               
               
               Conread position:74-368
               
               
               Cow position:chr15:14888733-14888444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):190, 66

               
               
               Conread position:74-384
               
               
               Cow position:chr15:8353945-8354256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 77

               
               
               Conread position:74-384
               
               
               Cow position:chr15:9622084-9622402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 115

               
               
               Conread position:75-366
               
               
               Cow position:chr15:21583022-21582728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):71, 102

               
               
               Conread position:75-384
               
               
               Cow position:chr15:23696997-23696698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 47

               
               
               Conread position:75-384
               
               
               Cow position:chr15:38837649-38837959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):62, 98

               
               
               Conread position:75-384
               
               
               Cow position:chr15:39490756-39490442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):165, 89

               
               
               Conread position:76-258
               
               
               Cow position:chr15:36422524-36422699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:76-368
               
               
               Cow position:chr15:10608408-10608109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):50, 106

               
               
               Conread position:77-346
               
               
               Cow position:chr15:43851681-43851410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 100

               
               
               Conread position:79-382
               
               
               Cow position:chr15:16583788-16583495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):65, 84

               
               
               Conread position:79-384
               
               
               Cow position:chr15:2953224-2952916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):86, 67

               
               
               Conread position:79-384
               
               
               Cow position:chr15:17762817-17763120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 142

               
               
               Conread position:79-386
               
               
               Cow position:chr15:1804424-1804123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):92, 49

               
               
               Conread position:80-289
               
               
               Cow position:chr15:6102251-6102044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):69, 106

               
               
               Conread position:80-371
               
               
               Cow position:chr15:38935314-38935607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 107

               
               
               Conread position:80-378
               
               
               Cow position:chr15:8961933-8962212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):180, 46

               
               
               Conread position:80-384
               
               
               Cow position:chr15:33643001-33643302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 76

               
               
               Conread position:83-282
               
               
               Cow position:chr15:52432251-52432458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:88-378
               
               
               Cow position:chr15:12785345-12785630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):83, 140

               
               
               Conread position:90-354
               
               
               Cow position:chr15:28038708-28038957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):174, 30

               
               
               Conread position:90-363
               
               
               Cow position:chr15:31948923-31949185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 71

               
               
               Conread position:90-378
               
               
               Cow position:chr15:23866152-23865864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):60, 52

               
               
               Conread position:90-383
               
               
               Cow position:chr15:17337289-17337570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 37

               
               
               Conread position:95-368
               
               
               Cow position:chr15:50265563-50265294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 65

               
               
               Conread position:97-376
               
               
               Cow position:chr15:12358961-12359240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):149, 83

               
               
               Conread position:105-379
               
               
               Cow position:chr15:39621266-39621549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:107-384
               
               
               Cow position:chr15:915905-915633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):157, 52

               
               
               Conread position:112-252
               
               
               Cow position:chr15:39384229-39384368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:114-384
               
               
               Cow position:chr15:51898169-51898443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):39, 75

               
               
               Conread position:115-384
               
               
               Cow position:chr15:33624897-33625163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:127-384
               
               
               Cow position:chr15:42415208-42415471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):22, 62

               
               
               Conread position:128-230
               
               
               Cow position:chr15:1984253-1984355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:128-274
               
               
               Cow position:chr15:14261300-14261155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):137, 111

               
               
               Conread position:128-281
               
               
               Cow position:chr15:11912600-11912448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):16, 94

               
               
               Conread position:128-303
               
               
               Cow position:chr15:40594548-40594371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:128-319
               
               
               Cow position:chr15:50660580-50660778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):68, 23

               
               
               Conread position:128-330
               
               
               Cow position:chr15:26718963-26718762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):176, 94

               
               
               Conread position:128-332
               
               
               Cow position:chr15:14176540-14176339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-363
               
               
               Cow position:chr15:35441119-35440884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-383
               
               
               Cow position:chr15:5929856-5930104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):239, 33

               
               
               Conread position:128-384
               
               
               Cow position:chr15:6530889-6530636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):136, 18

               
               
               Conread position:128-384
               
               
               Cow position:chr15:29330965-29331216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):154, 24

               
               
               Conread position:128-384
               
               
               Cow position:chr15:36782370-36782115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:129-269
               
               
               Cow position:chr15:2389654-2389795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:129-272
               
               
               Cow position:chr15:14281509-14281651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):132, 23

               
               
               Conread position:129-410
               
               
               Cow position:chr15:16616153-16616439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:130-348
               
               
               Cow position:chr15:31175754-31175977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:130-384
               
               
               Cow position:chr15:9106993-9107249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):24, 50

               
               
               Conread position:131-282
               
               
               Cow position:chr15:25650450-25650301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):133, 90

               
               
               Conread position:131-319
               
               
               Cow position:chr15:34751049-34751233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):133, 90

               
               
               Conread position:131-331
               
               
               Cow position:chr15:32977887-32977685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:131-343
               
               
               Cow position:chr15:21820949-21821160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):39, 48

               
               
               Conread position:131-378
               
               
               Cow position:chr15:10737782-10737542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 58

               
               
               Conread position:131-382
               
               
               Cow position:chr15:29604738-29604505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):133, 22

               
               
               Conread position:131-383
               
               
               Cow position:chr15:2141343-2141088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):133, 154

               
               
               Conread position:131-383
               
               
               Cow position:chr15:42789186-42788939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 21

               
               
               Conread position:131-384
               
               
               Cow position:chr15:10335716-10335969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):24, 81

               
               
               Conread position:131-384
               
               
               Cow position:chr15:13554314-13554567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-384
               
               
               Cow position:chr15:22871574-22871819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):133, 63

               
               
               Conread position:131-384
               
               
               Cow position:chr15:39316882-39316622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):133, 207

               
               
               Conread position:131-384
               
               
               Cow position:chr15:47592703-47592446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 47

               
               
               Conread position:131-384
               
               
               Cow position:chr15:50302144-50302396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):134, 73

               
               
               Conread position:133-378
               
               
               Cow position:chr15:15880890-15881135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):127, 23

               
               
               Conread position:134-329
               
               
               Cow position:chr15:9497535-9497342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):171, 18

               
               
               Conread position:135-384
               
               
               Cow position:chr15:26573346-26573591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):129, 16

               
               
               Conread position:135-414
               
               
               Cow position:chr15:35205186-35204908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:136-273
               
               
               Cow position:chr15:3873275-3873411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:136-369
               
               
               Cow position:chr15:48711087-48710856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):126, 16

               
               
               Conread position:138-383
               
               
               Cow position:chr15:16307390-16307624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 9

               
               
               Conread position:140-327
               
               
               Cow position:chr15:22442307-22442117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):114, 7

               
               
               Conread position:142-326
               
               
               Cow position:chr15:44237388-44237573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):122, 143

               
               
               Conread position:142-341
               
               
               Cow position:chr15:50088950-50089153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:142-382
               
               
               Cow position:chr15:20351803-20352040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):124, 159

               
               
               Conread position:146-343
               
               
               Cow position:chr15:16908408-16908603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):120, 138

               
               
               Conread position:146-378
               
               
               Cow position:chr15:9781446-9781671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):25, 35

               
               
               Conread position:146-384
               
               
               Cow position:chr15:2145163-2144918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:146-384
               
               
               Cow position:chr15:12870889-12870651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):118, 152

               
               
               Conread position:146-384
               
               
               Cow position:chr15:34207212-34206976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):118, 81

               
               
               Conread position:146-384
               
               
               Cow position:chr15:46868739-46868499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):118, 47

               
               
               Conread position:147-279
               
               
               Cow position:chr15:30794956-30795086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):116, 74

               
               
               Conread position:147-338
               
               
               Cow position:chr15:37284429-37284622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):117, 169

               
               
               Conread position:147-364
               
               
               Cow position:chr15:12624-12843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):19, 28

               
               
               Conread position:147-384
               
               
               Cow position:chr15:40009668-40009438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):117, 30

               
               
               Conread position:148-347
               
               
               Cow position:chr15:13284999-13285193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):116, 26

               
               
               Conread position:148-383
               
               
               Cow position:chr15:21389187-21388956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):116, 74

               
               
               Conread position:148-383
               
               
               Cow position:chr15:37205025-37205256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):118, 153

               
               
               Conread position:148-384
               
               
               Cow position:chr15:41000093-40999856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):116, 83

               
               
               Conread position:148-384
               
               
               Cow position:chr15:49257841-49258075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):116, 125

               
               
               Conread position:149-384
               
               
               Cow position:chr15:26404260-26404487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):9, 79

               
               
               Conread position:151-280
               
               
               Cow position:chr15:39090275-39090406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:151-325
               
               
               Cow position:chr15:78554-78727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):110, 36

               
               
               Conread position:152-384
               
               
               Cow position:chr15:4093952-4093720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):113, 134

               
               
               Conread position:152-384
               
               
               Cow position:chr15:5729922-5730153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):24, 13

               
               
               Conread position:152-384
               
               
               Cow position:chr15:12655935-12655702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):112, 121

               
               
               Conread position:153-329
               
               
               Cow position:chr15:40415657-40415481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 8

               
               
               Conread position:153-383
               
               
               Cow position:chr15:29340043-29340275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):60, 185

               
               
               Conread position:155-256
               
               
               Cow position:chr15:24953539-24953438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:83
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:155-366
               
               
               Cow position:chr15:10660571-10660357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:155-368
               
               
               Cow position:chr15:21166441-21166220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:155-377
               
               
               Cow position:chr15:43599173-43599393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 128

               
               
               Conread position:155-378
               
               
               Cow position:chr15:15573851-15573624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):71, 134

               
               
               Conread position:155-384
               
               
               Cow position:chr15:9970994-9970763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):114, 89

               
               
               Conread position:156-332
               
               
               Cow position:chr15:6905062-6905233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):108, 45

               
               
               Conread position:159-384
               
               
               Cow position:chr15:13387065-13387292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):105, 78

               
               
               Conread position:163-384
               
               
               Cow position:chr15:4534903-4535124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):105, 48

               
               
               Conread position:163-384
               
               
               Cow position:chr15:24128023-24128238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):108, 59

               
               
               Conread position:165-366
               
               
               Cow position:chr15:35417631-35417433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):99, 120

               
               
               Conread position:167-385
               
               
               Cow position:chr15:23568131-23567906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):97, 118

               
               
               Conread position:168-368
               
               
               Cow position:chr15:3726121-3726319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):96, 117

               
               
               Conread position:169-328
               
               
               Cow position:chr15:41360952-41360795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):107, 95

               
               
               Conread position:170-384
               
               
               Cow position:chr15:23768257-23768050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):96, 13

               
               
               Conread position:179-384
               
               
               Cow position:chr15:13515374-13515581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:179-384
               
               
               Cow position:chr15:24305473-24305269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):35, 45

               
               
               Conread position:181-384
               
               
               Cow position:chr15:9928369-9928572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):83, 104

               
               
               Conread position:185-384
               
               
               Cow position:chr15:9526464-9526260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):74, 100

               
               
               Conread position:185-384
               
               
               Cow position:chr15:47280125-47279927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):79, 100

               
               
               Conread position:187-384
               
               
               Cow position:chr15:5535775-5535970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):107, 33

               
               
               Conread position:189-384
               
               
               Cow position:chr15:24045083-24044886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):6, 103

               
               
               Conread position:191-383
               
               
               Cow position:chr15:9871395-9871202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:191-384
               
               
               Cow position:chr15:18720334-18720523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):188, 49

               
               
               Conread position:191-394
               
               
               Cow position:chr15:47843231-47843027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):71, 129

               
               
               Conread position:192-348
               
               
               Cow position:chr15:16476718-16476560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):72, 96

               
               
               Conread position:193-385
               
               
               Cow position:chr15:10512250-10512057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):71, 149

               
               
               Conread position:196-373
               
               
               Cow position:chr15:24941346-24941175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):61, 41

               
               
               Conread position:196-443
               
               
               Cow position:chr15:28258432-28258186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):68, 27

               
               
               Conread position:207-384
               
               
               Cow position:chr15:38877268-38877094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):57, 125

               
               
               Conread position:208-378
               
               
               Cow position:chr15:16904667-16904831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):43, 52

               
               
               Conread position:223-384
               
               
               Cow position:chr15:38103833-38103679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 62

               
               
               Conread position:230-384
               
               
               Cow position:chr15:23487109-23486956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 7

               
               
               Conread position:237-384
               
               
               Cow position:chr15:15708048-15707898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:240-384
               
               
               Cow position:chr15:23702848-23702987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 45

               
               
               Conread position:254-384
               
               
               Cow position:chr15:21522869-21523000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 45

               
               
               Conread position:1-266
               
               
               Cow position:chr16:27051302-27051039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):145, 28

               
               
               Conread position:1-371
               
               
               Cow position:chr16:13696419-13696789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):24, 187

               
               
               Conread position:1-384
               
               
               Cow position:chr16:13712682-13713036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 91

               
               
               Conread position:2-227
               
               
               Cow position:chr16:10033126-10032896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 188

               
               
               Conread position:2-331
               
               
               Cow position:chr16:17135990-17135657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 35

               
               
               Conread position:3-229
               
               
               Cow position:chr16:31011588-31011359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):16, 27

               
               
               Conread position:5-215
               
               
               Cow position:chr16:27117555-27117350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):144, 20

               
               
               Conread position:5-384
               
               
               Cow position:chr16:5654757-5654388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):17, 181

               
               
               Conread position:6-261
               
               
               Cow position:chr16:56912434-56912685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):33, 16

               
               
               Conread position:7-383
               
               
               Cow position:chr16:6016134-6016512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):253, 46

               
               
               Conread position:8-378
               
               
               Cow position:chr16:35343224-35343587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):146, 15

               
               
               Conread position:9-282
               
               
               Cow position:chr16:11389315-11389595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:10-384
               
               
               Cow position:chr16:30290558-30290193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):172, 27

               
               
               Conread position:11-384
               
               
               Cow position:chr16:7011321-7010945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):145, 176

               
               
               Conread position:12-257
               
               
               Cow position:chr16:19402505-19402758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):17, 91

               
               
               Conread position:13-238
               
               
               Cow position:chr16:55961082-55961305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):15, 43

               
               
               Conread position:18-384
               
               
               Cow position:chr16:7151932-7152296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):136, 46

               
               
               Conread position:19-366
               
               
               Cow position:chr16:22380122-22380459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):194, 12

               
               
               Conread position:20-289
               
               
               Cow position:chr16:9729965-9730235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 46

               
               
               Conread position:21-244
               
               
               Cow position:chr16:25419014-25419237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):126, 32

               
               
               Conread position:25-252
               
               
               Cow position:chr16:15927468-15927244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):137, 24

               
               
               Conread position:25-273
               
               
               Cow position:chr16:18572819-18573067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):25, 119

               
               
               Conread position:26-238
               
               
               Cow position:chr16:37064622-37064846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:26-257
               
               
               Cow position:chr16:19478532-19478761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):27, 62

               
               
               Conread position:26-262
               
               
               Cow position:chr16:45193576-45193810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:26-384
               
               
               Cow position:chr16:8738300-8737941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 24

               
               
               Conread position:26-384
               
               
               Cow position:chr16:42241895-42242240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):240, 23

               
               
               Conread position:27-384
               
               
               Cow position:chr16:38904990-38905353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:255
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):34, 168

               
               
               Conread position:28-238
               
               
               Cow position:chr16:4616454-4616660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-255
               
               
               Cow position:chr16:38355200-38355421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 96

               
               
               Conread position:28-383
               
               
               Cow position:chr16:7076154-7075791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 203

               
               
               Conread position:28-383
               
               
               Cow position:chr16:49336451-49336105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):232, 29

               
               
               Conread position:29-272
               
               
               Cow position:chr16:52357303-52357551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 149

               
               
               Conread position:29-367
               
               
               Cow position:chr16:48360235-48360560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 38

               
               
               Conread position:29-378
               
               
               Cow position:chr16:26610873-26610523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:29-378
               
               
               Cow position:chr16:33299631-33299278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):25, 239

               
               
               Conread position:29-378
               
               
               Cow position:chr16:37117306-37116956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:29-378
               
               
               Cow position:chr16:53553485-53553828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):124, 157

               
               
               Conread position:29-381
               
               
               Cow position:chr16:38663477-38663827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:30-339
               
               
               Cow position:chr16:8018185-8017889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):205, 23

               
               
               Conread position:30-377
               
               
               Cow position:chr16:12274298-12273952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):119, 23

               
               
               Conread position:30-386
               
               
               Cow position:chr16:33588890-33588542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):124, 34

               
               
               Conread position:30-394
               
               
               Cow position:chr16:38020340-38019980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:31-214
               
               
               Cow position:chr16:13053779-13053596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 103

               
               
               Conread position:31-228
               
               
               Cow position:chr16:27326895-27327092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 22

               
               
               Conread position:31-238
               
               
               Cow position:chr16:52325366-52325576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 124

               
               
               Conread position:31-248
               
               
               Cow position:chr16:17180385-17180172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):123, 31

               
               
               Conread position:31-252
               
               
               Cow position:chr16:30211678-30211463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:31-332
               
               
               Cow position:chr16:22334936-22335229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):228, 22

               
               
               Conread position:31-343
               
               
               Cow position:chr16:15981164-15981479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):157, 22

               
               
               Conread position:31-346
               
               
               Cow position:chr16:51241315-51241625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):123, 17

               
               
               Conread position:31-379
               
               
               Cow position:chr16:2223167-2223520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 22

               
               
               Conread position:31-380
               
               
               Cow position:chr16:12467739-12468084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):123, 45

               
               
               Conread position:31-384
               
               
               Cow position:chr16:3304267-3303908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):27, 262

               
               
               Conread position:31-384
               
               
               Cow position:chr16:12320457-12320098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 299

               
               
               Conread position:31-385
               
               
               Cow position:chr16:10032866-10032516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):96, 22

               
               
               Conread position:32-265
               
               
               Cow position:chr16:24202630-24202869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):24, 151

               
               
               Conread position:32-282
               
               
               Cow position:chr16:15945024-15945278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:32-384
               
               
               Cow position:chr16:50282209-50282549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):198, 24

               
               
               Conread position:33-252
               
               
               Cow position:chr16:24674447-24674669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:33-325
               
               
               Cow position:chr16:11094596-11094893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:33-382
               
               
               Cow position:chr16:54298689-54298347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):123, 31

               
               
               Conread position:33-384
               
               
               Cow position:chr16:12360760-12361100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):192, 72

               
               
               Conread position:33-384
               
               
               Cow position:chr16:35195381-35195729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):8, 114

               
               
               Conread position:33-384
               
               
               Cow position:chr16:44584215-44584561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):27, 54

               
               
               Conread position:33-384
               
               
               Cow position:chr16:48385191-48385524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):231, 20

               
               
               Conread position:34-282
               
               
               Cow position:chr16:11584179-11584426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 97

               
               
               Conread position:34-305
               
               
               Cow position:chr16:30936087-30935815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):102, 19

               
               
               Conread position:34-332
               
               
               Cow position:chr16:29528063-29527752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):81, 31

               
               
               Conread position:34-377
               
               
               Cow position:chr16:23058209-23058549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):112, 16

               
               
               Conread position:34-378
               
               
               Cow position:chr16:20476759-20476420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):131, 93

               
               
               Conread position:34-384
               
               
               Cow position:chr16:31117394-31117738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 23

               
               
               Conread position:34-384
               
               
               Cow position:chr16:56787549-56787902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):94, 30

               
               
               Conread position:35-213
               
               
               Cow position:chr16:56198943-56198760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:35-274
               
               
               Cow position:chr16:9596589-9596356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):229, 32

               
               
               Conread position:35-384
               
               
               Cow position:chr16:30369572-30369229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):99, 18

               
               
               Conread position:36-382
               
               
               Cow position:chr16:50289374-50289028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):21, 50

               
               
               Conread position:36-383
               
               
               Cow position:chr16:16235909-16236251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):130, 27

               
               
               Conread position:36-387
               
               
               Cow position:chr16:9830672-9830321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 52

               
               
               Conread position:37-343
               
               
               Cow position:chr16:7977207-7976901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:203
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:37-343
               
               
               Cow position:chr16:10020766-10020454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):28, 58

               
               
               Conread position:37-378
               
               
               Cow position:chr16:44147205-44147543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 140

               
               
               Conread position:37-384
               
               
               Cow position:chr16:6887225-6887569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):117, 134

               
               
               Conread position:37-384
               
               
               Cow position:chr16:36120774-36121104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):227, 37

               
               
               Conread position:37-384
               
               
               Cow position:chr16:41530082-41530415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):27, 58

               
               
               Conread position:37-384
               
               
               Cow position:chr16:42078625-42078964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 108

               
               
               Conread position:38-295
               
               
               Cow position:chr16:18243960-18243709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):26, 143

               
               
               Conread position:38-368
               
               
               Cow position:chr16:22773195-22772871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):226, 103

               
               
               Conread position:38-384
               
               
               Cow position:chr16:7665860-7665511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):108, 15

               
               
               Conread position:38-384
               
               
               Cow position:chr16:16552785-16552438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):109, 13

               
               
               Conread position:38-384
               
               
               Cow position:chr16:26702698-26703042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:38-384
               
               
               Cow position:chr16:38191700-38191348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):26, 89

               
               
               Conread position:38-384
               
               
               Cow position:chr16:49125298-49125652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):23, 61

               
               
               Conread position:39-272
               
               
               Cow position:chr16:5382413-5382166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:39-343
               
               
               Cow position:chr16:9729418-9729118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):112, 14

               
               
               Conread position:39-378
               
               
               Cow position:chr16:11774825-11775166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:39-383
               
               
               Cow position:chr16:47820795-47820451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 194

               
               
               Conread position:40-249
               
               
               Cow position:chr16:11003340-11003553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 140

               
               
               Conread position:40-270
               
               
               Cow position:chr16:12220901-12220671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):104, 11

               
               
               Conread position:40-271
               
               
               Cow position:chr16:12324670-12324444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):222, 12

               
               
               Conread position:40-366
               
               
               Cow position:chr16:23483500-23483188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):142, 24

               
               
               Conread position:40-378
               
               
               Cow position:chr16:11815371-11815719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):72, 24

               
               
               Conread position:40-384
               
               
               Cow position:chr16:25170614-25170265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 112

               
               
               Conread position:40-384
               
               
               Cow position:chr16:31977967-31978311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):148, 24

               
               
               Conread position:41-220
               
               
               Cow position:chr16:33629641-33629465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):34, 66

               
               
               Conread position:41-241
               
               
               Cow position:chr16:28233088-28233285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):103, 12

               
               
               Conread position:41-383
               
               
               Cow position:chr16:7505295-7504965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 23

               
               
               Conread position:41-384
               
               
               Cow position:chr16:5896640-5896295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):48, 11

               
               
               Conread position:41-384
               
               
               Cow position:chr16:11083217-11082885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 113

               
               
               Conread position:41-384
               
               
               Cow position:chr16:19047216-19047562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 12

               
               
               Conread position:42-237
               
               
               Cow position:chr16:12111747-12111939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):16, 106

               
               
               Conread position:42-317
               
               
               Cow position:chr16:51795387-51795656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):155, 23

               
               
               Conread position:43-162
               
               
               Cow position:chr16:11791303-11791184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):21, 99

               
               
               Conread position:43-252
               
               
               Cow position:chr16:25369605-25369395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 21

               
               
               Conread position:43-397
               
               
               Cow position:chr16:33130672-33130318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):145, 21

               
               
               Conread position:44-384
               
               
               Cow position:chr16:48398042-48398375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 29

               
               
               Conread position:45-169
               
               
               Cow position:chr16:21761732-21761857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:45-299
               
               
               Cow position:chr16:37401456-37401212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):13, 79

               
               
               Conread position:45-382
               
               
               Cow position:chr16:33705021-33704685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 86

               
               
               Conread position:46-247
               
               
               Cow position:chr16:34506557-34506362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):189, 11

               
               
               Conread position:46-378
               
               
               Cow position:chr16:10148479-10148163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):214, 7

               
               
               Conread position:47-249
               
               
               Cow position:chr16:45278752-45278548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 139

               
               
               Conread position:47-273
               
               
               Cow position:chr16:55613289-55613517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):125, 17

               
               
               Conread position:47-346
               
               
               Cow position:chr16:17134849-17135145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 17

               
               
               Conread position:47-368
               
               
               Cow position:chr16:15504320-15504627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):212, 17

               
               
               Conread position:47-373
               
               
               Cow position:chr16:33869538-33869873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):74, 17

               
               
               Conread position:47-377
               
               
               Cow position:chr16:28395880-28396213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):217, 10

               
               
               Conread position:47-384
               
               
               Cow position:chr16:10592658-10592311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 42

               
               
               Conread position:47-384
               
               
               Cow position:chr16:56565801-56565472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):187, 45

               
               
               Conread position:48-249
               
               
               Cow position:chr16:42038275-42038074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):102, 16

               
               
               Conread position:48-266
               
               
               Cow position:chr16:39029881-39030104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:48-343
               
               
               Cow position:chr16:44429087-44428797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):216, 5

               
               
               Conread position:48-352
               
               
               Cow position:chr16:46752059-46752363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):110, 16

               
               
               Conread position:48-384
               
               
               Cow position:chr16:21451063-21450720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):16, 139

               
               
               Conread position:48-400
               
               
               Cow position:chr16:27020280-27019934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):104, 16

               
               
               Conread position:49-224
               
               
               Cow position:chr16:10011637-10011816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):95, 140

               
               
               Conread position:49-238
               
               
               Cow position:chr16:47243175-47242984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 119

               
               
               Conread position:49-250
               
               
               Cow position:chr16:33290598-33290395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:49-251
               
               
               Cow position:chr16:44394498-44394290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:49-255
               
               
               Cow position:chr16:12507046-12507256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):17, 131

               
               
               Conread position:49-255
               
               
               Cow position:chr16:18047941-18048149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):97, 129

               
               
               Conread position:49-309
               
               
               Cow position:chr16:7136135-7136397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):214, 110

               
               
               Conread position:49-327
               
               
               Cow position:chr16:23718761-23719046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 128

               
               
               Conread position:49-332
               
               
               Cow position:chr16:9985190-9985472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):11, 58

               
               
               Conread position:49-332
               
               
               Cow position:chr16:38244406-38244697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 145

               
               
               Conread position:49-368
               
               
               Cow position:chr16:8522181-8522500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):105, 15

               
               
               Conread position:49-379
               
               
               Cow position:chr16:53813438-53813772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 117

               
               
               Conread position:49-383
               
               
               Cow position:chr16:50872973-50873287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):22, 61

               
               
               Conread position:49-384
               
               
               Cow position:chr16:7583609-7583273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 111

               
               
               Conread position:49-384
               
               
               Cow position:chr16:15824231-15824568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:50-202
               
               
               Cow position:chr16:23034039-23033886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 103

               
               
               Conread position:50-225
               
               
               Cow position:chr16:5396606-5396781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):72, 97

               
               
               Conread position:50-230
               
               
               Cow position:chr16:13906243-13906415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):11, 61

               
               
               Conread position:50-235
               
               
               Cow position:chr16:33302394-33302210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:50-238
               
               
               Cow position:chr16:38581214-38581025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):118, 14

               
               
               Conread position:50-240
               
               
               Cow position:chr16:24672650-24672842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):110, 137

               
               
               Conread position:50-241
               
               
               Cow position:chr16:21442397-21442591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:50-247
               
               
               Cow position:chr16:21044511-21044310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:50-249
               
               
               Cow position:chr16:10249605-10249807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 138

               
               
               Conread position:50-251
               
               
               Cow position:chr16:11019303-11019506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):76, 150

               
               
               Conread position:50-255
               
               
               Cow position:chr16:12091442-12091657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:50-255
               
               
               Cow position:chr16:56615293-56615497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):142, 14

               
               
               Conread position:50-260
               
               
               Cow position:chr16:8809887-8810092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):136, 88

               
               
               Conread position:50-272
               
               
               Cow position:chr16:14376991-14376770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):96, 172

               
               
               Conread position:50-272
               
               
               Cow position:chr16:56595177-56595399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):96, 194

               
               
               Conread position:50-302
               
               
               Cow position:chr16:8953463-8953720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):16, 159

               
               
               Conread position:50-327
               
               
               Cow position:chr16:20824688-20824417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 102

               
               
               Conread position:50-328
               
               
               Cow position:chr16:46548053-46548344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:50-342
               
               
               Cow position:chr16:56670699-56671002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):16, 253

               
               
               Conread position:50-355
               
               
               Cow position:chr16:47835127-47834835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):121, 15

               
               
               Conread position:50-366
               
               
               Cow position:chr16:45731195-45731494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):214, 36

               
               
               Conread position:50-369
               
               
               Cow position:chr16:19052844-19052527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 56

               
               
               Conread position:50-378
               
               
               Cow position:chr16:591594-591928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):94, 244

               
               
               Conread position:50-378
               
               
               Cow position:chr16:9497049-9497393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):14, 132

               
               
               Conread position:50-378
               
               
               Cow position:chr16:15370894-15370565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):14, 90

               
               
               Conread position:50-378
               
               
               Cow position:chr16:17143149-17142822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):19, 247

               
               
               Conread position:50-378
               
               
               Cow position:chr16:18353743-18354066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 85

               
               
               Conread position:50-381
               
               
               Cow position:chr16:55233888-55233574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):215, 82

               
               
               Conread position:50-382
               
               
               Cow position:chr16:55683509-55683176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):9, 45

               
               
               Conread position:50-382
               
               
               Cow position:chr16:55784535-55784880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):16, 114

               
               
               Conread position:50-383
               
               
               Cow position:chr16:23472952-23472624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):214, 76

               
               
               Conread position:50-383
               
               
               Cow position:chr16:40446477-40446129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:50-383
               
               
               Cow position:chr16:42398677-42399022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):11, 139

               
               
               Conread position:50-383
               
               
               Cow position:chr16:51709938-51710251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):11, 72

               
               
               Conread position:50-384
               
               
               Cow position:chr16:8958848-8959183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):99, 41

               
               
               Conread position:50-384
               
               
               Cow position:chr16:14685181-14685513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):144, 102

               
               
               Conread position:50-384
               
               
               Cow position:chr16:18206165-18205837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:50-384
               
               
               Cow position:chr16:22841837-22842183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):86, 136

               
               
               Conread position:50-384
               
               
               Cow position:chr16:35758410-35758088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):122, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr16:38243450-38243786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):74, 110

               
               
               Conread position:50-384
               
               
               Cow position:chr16:39165443-39165120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):206, 78

               
               
               Conread position:50-384
               
               
               Cow position:chr16:45139874-45139548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:50-384
               
               
               Cow position:chr16:45678189-45677863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 43

               
               
               Conread position:50-384
               
               
               Cow position:chr16:50417501-50417807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):217, 95

               
               
               Conread position:51-234
               
               
               Cow position:chr16:9097234-9097050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):95, 6

               
               
               Conread position:51-343
               
               
               Cow position:chr16:52170261-52169974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 6

               
               
               Conread position:51-377
               
               
               Cow position:chr16:7429590-7429261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):49, 6

               
               
               Conread position:51-378
               
               
               Cow position:chr16:18757625-18757957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:51-382
               
               
               Cow position:chr16:4971812-4972143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):80, 116

               
               
               Conread position:51-384
               
               
               Cow position:chr16:32781579-32781242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:51-384
               
               
               Cow position:chr16:45554644-45554319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 72

               
               
               Conread position:51-384
               
               
               Cow position:chr16:51501136-51500810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 6

               
               
               Conread position:51-384
               
               
               Cow position:chr16:52274925-52275254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 90

               
               
               Conread position:52-211
               
               
               Cow position:chr16:22863485-22863632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:52-272
               
               
               Cow position:chr16:50286721-50286501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):97, 66

               
               
               Conread position:52-289
               
               
               Cow position:chr16:1582721-1582955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):212, 40

               
               
               Conread position:52-296
               
               
               Cow position:chr16:15905035-15905284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 40

               
               
               Conread position:52-326
               
               
               Cow position:chr16:42539375-42539655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):89, 21

               
               
               Conread position:52-332
               
               
               Cow position:chr16:32301794-32302076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):47, 237

               
               
               Conread position:52-347
               
               
               Cow position:chr16:44138283-44138587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):94, 21

               
               
               Conread position:52-361
               
               
               Cow position:chr16:19670150-19670447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):212, 88

               
               
               Conread position:52-384
               
               
               Cow position:chr16:25839819-25839495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 69

               
               
               Conread position:52-384
               
               
               Cow position:chr16:29096125-29095816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:52-384
               
               
               Cow position:chr16:42733813-42734137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):114, 39

               
               
               Conread position:52-384
               
               
               Cow position:chr16:44210350-44210689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):18, 29

               
               
               Conread position:53-220
               
               
               Cow position:chr16:23515560-23515725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:53-230
               
               
               Cow position:chr16:19496811-19496988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:53-235
               
               
               Cow position:chr16:336378-336562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 105

               
               
               Conread position:53-241
               
               
               Cow position:chr16:9836573-9836755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 75

               
               
               Conread position:53-247
               
               
               Cow position:chr16:16178232-16178046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:53-253
               
               
               Cow position:chr16:44144598-44144396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:53-254
               
               
               Cow position:chr16:7912335-7912136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):5, 32

               
               
               Conread position:53-255
               
               
               Cow position:chr16:22776210-22776416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:53-273
               
               
               Cow position:chr16:13995989-13996208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 30

               
               
               Conread position:53-282
               
               
               Cow position:chr16:50442759-50442526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 128

               
               
               Conread position:53-309
               
               
               Cow position:chr16:31880545-31880811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):69, 181

               
               
               Conread position:53-321
               
               
               Cow position:chr16:45294751-45294482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 11

               
               
               Conread position:53-330
               
               
               Cow position:chr16:42432910-42433185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):118, 66

               
               
               Conread position:53-332
               
               
               Cow position:chr16:35741087-35740798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):11, 124

               
               
               Conread position:53-339
               
               
               Cow position:chr16:16842322-16842607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):206, 107

               
               
               Conread position:53-351
               
               
               Cow position:chr16:56358077-56358358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:53-367
               
               
               Cow position:chr16:40514286-40514587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 74

               
               
               Conread position:53-373
               
               
               Cow position:chr16:44743923-44744246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):103, 123

               
               
               Conread position:53-374
               
               
               Cow position:chr16:40333127-40333440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 75

               
               
               Conread position:53-378
               
               
               Cow position:chr16:22984957-22984640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):206, 74

               
               
               Conread position:53-382
               
               
               Cow position:chr16:24855741-24855420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 68

               
               
               Conread position:53-383
               
               
               Cow position:chr16:935250-935565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):125, 92

               
               
               Conread position:53-384
               
               
               Cow position:chr16:4856892-4857219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 170

               
               
               Conread position:53-384
               
               
               Cow position:chr16:9933368-9933035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 122

               
               
               Conread position:53-384
               
               
               Cow position:chr16:29712623-29712296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):118, 93

               
               
               Conread position:53-384
               
               
               Cow position:chr16:42969715-42970052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:53-385
               
               
               Cow position:chr16:11957373-11957710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):211, 13

               
               
               Conread position:54-231
               
               
               Cow position:chr16:49733939-49734115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:54-241
               
               
               Cow position:chr16:12251229-12251040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:54-255
               
               
               Cow position:chr16:15714318-15714115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):92, 129

               
               
               Conread position:54-257
               
               
               Cow position:chr16:11653336-11653142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:54-272
               
               
               Cow position:chr16:9578287-9578503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):210, 90

               
               
               Conread position:54-329
               
               
               Cow position:chr16:42977680-42977394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):77, 114

               
               
               Conread position:54-332
               
               
               Cow position:chr16:8242721-8242991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):112, 72

               
               
               Conread position:54-383
               
               
               Cow position:chr16:23681567-23681247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):211, 85

               
               
               Conread position:54-384
               
               
               Cow position:chr16:8068610-8068942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):74, 114

               
               
               Conread position:54-384
               
               
               Cow position:chr16:29557418-29557751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):117, 177

               
               
               Conread position:54-384
               
               
               Cow position:chr16:50933688-50933994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):148, 40

               
               
               Conread position:54-384
               
               
               Cow position:chr16:51112676-51113001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):32, 16

               
               
               Conread position:54-384
               
               
               Cow position:chr16:56232018-56231703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 68

               
               
               Conread position:55-257
               
               
               Cow position:chr16:9513497-9513298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:55-257
               
               
               Cow position:chr16:53451910-53451709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):28, 74

               
               
               Conread position:55-296
               
               
               Cow position:chr16:49860441-49860196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):21, 92

               
               
               Conread position:55-382
               
               
               Cow position:chr16:32969876-32970200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 92

               
               
               Conread position:55-384
               
               
               Cow position:chr16:49125985-49126309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):49, 74

               
               
               Conread position:56-216
               
               
               Cow position:chr16:35476937-35477091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:56-246
               
               
               Cow position:chr16:45826518-45826703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):149, 18

               
               
               Conread position:56-262
               
               
               Cow position:chr16:7928178-7928386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:56-272
               
               
               Cow position:chr16:24142748-24142971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):84, 35

               
               
               Conread position:56-289
               
               
               Cow position:chr16:21369986-21370216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:56-290
               
               
               Cow position:chr16:29026417-29026177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):82, 27

               
               
               Conread position:56-309
               
               
               Cow position:chr16:27728453-27728208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):208, 29

               
               
               Conread position:56-345
               
               
               Cow position:chr16:32426521-32426805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):100, 35

               
               
               Conread position:56-352
               
               
               Cow position:chr16:32587412-32587106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:56-369
               
               
               Cow position:chr16:45122246-45121930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 262

               
               
               Conread position:56-374
               
               
               Cow position:chr16:46552997-46552693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:56-378
               
               
               Cow position:chr16:4851911-4852233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):184, 105

               
               
               Conread position:56-378
               
               
               Cow position:chr16:14361298-14360989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):201, 13

               
               
               Conread position:56-383
               
               
               Cow position:chr16:8493785-8494120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):82, 133

               
               
               Conread position:56-383
               
               
               Cow position:chr16:14754126-14754445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):170, 11

               
               
               Conread position:56-383
               
               
               Cow position:chr16:26649431-26649752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 31

               
               
               Conread position:56-384
               
               
               Cow position:chr16:54225313-54225630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):108, 198

               
               
               Conread position:57-220
               
               
               Cow position:chr16:48130193-48130354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:57-249
               
               
               Cow position:chr16:4102639-4102819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:57-263
               
               
               Cow position:chr16:49174499-49174289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):87, 175

               
               
               Conread position:57-278
               
               
               Cow position:chr16:7723902-7723683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):209, 51

               
               
               Conread position:57-283
               
               
               Cow position:chr16:31149578-31149355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):206, 88

               
               
               Conread position:57-332
               
               
               Cow position:chr16:28444284-28444561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):80, 133

               
               
               Conread position:57-335
               
               
               Cow position:chr16:51610622-51610911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):74, 244

               
               
               Conread position:57-346
               
               
               Cow position:chr16:33135130-33134856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):205, 53

               
               
               Conread position:57-350
               
               
               Cow position:chr16:36286484-36286771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):203, 73

               
               
               Conread position:57-358
               
               
               Cow position:chr16:56893412-56893710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 128

               
               
               Conread position:57-363
               
               
               Cow position:chr16:11660267-11660549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:57-368
               
               
               Cow position:chr16:424606-424920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):77, 126

               
               
               Conread position:57-378
               
               
               Cow position:chr16:50906681-50906355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):109, 130

               
               
               Conread position:57-379
               
               
               Cow position:chr16:2751177-2750877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):99, 44

               
               
               Conread position:57-379
               
               
               Cow position:chr16:43308362-43308680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):207, 35

               
               
               Conread position:57-383
               
               
               Cow position:chr16:8366619-8366943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):30, 174

               
               
               Conread position:57-383
               
               
               Cow position:chr16:48957002-48956672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 95

               
               
               Conread position:57-384
               
               
               Cow position:chr16:1548678-1548997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):102, 70

               
               
               Conread position:57-384
               
               
               Cow position:chr16:8322793-8323106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):209, 21

               
               
               Conread position:57-384
               
               
               Cow position:chr16:9973279-9973622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):85, 237

               
               
               Conread position:57-384
               
               
               Cow position:chr16:11422518-11422187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):65, 196

               
               
               Conread position:57-384
               
               
               Cow position:chr16:14242571-14242248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 84

               
               
               Conread position:57-384
               
               
               Cow position:chr16:39473955-39474261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):206, 29

               
               
               Conread position:57-384
               
               
               Cow position:chr16:42444363-42444032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 231

               
               
               Conread position:57-384
               
               
               Cow position:chr16:49229571-49229895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):202, 37

               
               
               Conread position:57-384
               
               
               Cow position:chr16:52834698-52835007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):207, 85

               
               
               Conread position:57-442
               
               
               Cow position:chr16:47852395-47852776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 83

               
               
               Conread position:58-238
               
               
               Cow position:chr16:50569462-50569286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:58-272
               
               
               Cow position:chr16:11359349-11359139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):204, 73

               
               
               Conread position:58-355
               
               
               Cow position:chr16:4971088-4970789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):96, 60

               
               
               Conread position:58-378
               
               
               Cow position:chr16:53508790-53509100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):206, 29

               
               
               Conread position:58-383
               
               
               Cow position:chr16:53428456-53428134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):124, 68

               
               
               Conread position:58-384
               
               
               Cow position:chr16:8065683-8066009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):88, 132

               
               
               Conread position:58-384
               
               
               Cow position:chr16:10039642-10039963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):71, 150

               
               
               Conread position:58-384
               
               
               Cow position:chr16:13689865-13689541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 83

               
               
               Conread position:58-384
               
               
               Cow position:chr16:42092176-42092507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):81, 36

               
               
               Conread position:58-384
               
               
               Cow position:chr16:51598411-51598729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 95

               
               
               Conread position:59-216
               
               
               Cow position:chr16:11467804-11467645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):97, 132

               
               
               Conread position:59-224
               
               
               Cow position:chr16:16543053-16542886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):88, 121

               
               
               Conread position:59-224
               
               
               Cow position:chr16:29311729-29311560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:59-231
               
               
               Cow position:chr16:17617160-17617333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):87, 11

               
               
               Conread position:59-231
               
               
               Cow position:chr16:30646710-30646542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:59-238
               
               
               Cow position:chr16:6026798-6026975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):81, 125

               
               
               Conread position:59-238
               
               
               Cow position:chr16:50943587-50943409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):88, 8

               
               
               Conread position:59-252
               
               
               Cow position:chr16:28980033-28979841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):83, 111

               
               
               Conread position:59-255
               
               
               Cow position:chr16:6609308-6609498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:59-274
               
               
               Cow position:chr16:31575348-31575130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:59-306
               
               
               Cow position:chr16:15407355-15407600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 128

               
               
               Conread position:59-320
               
               
               Cow position:chr16:56243683-56243945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:59-337
               
               
               Cow position:chr16:33236082-33236352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):97, 54

               
               
               Conread position:59-343
               
               
               Cow position:chr16:43125747-43126035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):97, 119

               
               
               Conread position:59-347
               
               
               Cow position:chr16:23955630-23955917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):70, 32

               
               
               Conread position:59-352
               
               
               Cow position:chr16:39516395-39516696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):90, 127

               
               
               Conread position:59-378
               
               
               Cow position:chr16:50409449-50409112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):90, 124

               
               
               Conread position:59-378
               
               
               Cow position:chr16:51697276-51696965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):192, 69

               
               
               Conread position:59-378
               
               
               Cow position:chr16:56796453-56796783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):68, 104

               
               
               Conread position:59-379
               
               
               Cow position:chr16:34753754-34754079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 13

               
               
               Conread position:59-383
               
               
               Cow position:chr16:7418574-7418261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):204, 34

               
               
               Conread position:59-383
               
               
               Cow position:chr16:39682898-39683231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):85, 127

               
               
               Conread position:59-384
               
               
               Cow position:chr16:820452-820124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 84

               
               
               Conread position:59-384
               
               
               Cow position:chr16:13306670-13306987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 0

               
               
               Conread position:59-384
               
               
               Cow position:chr16:24128908-24128581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):88, 111

               
               
               Conread position:59-384
               
               
               Cow position:chr16:46433123-46433451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:59-384
               
               
               Cow position:chr16:46655482-46655161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):72, 11

               
               
               Conread position:59-385
               
               
               Cow position:chr16:17746045-17745709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):77, 30

               
               
               Conread position:60-230
               
               
               Cow position:chr16:41696206-41696039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:60-273
               
               
               Cow position:chr16:32142292-32142077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):86, 126

               
               
               Conread position:60-308
               
               
               Cow position:chr16:20921352-20921107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):118, 85

               
               
               Conread position:60-318
               
               
               Cow position:chr16:51043846-51043594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):207, 56

               
               
               Conread position:60-321
               
               
               Cow position:chr16:12379141-12379417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:60-337
               
               
               Cow position:chr16:9553249-9552984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 32

               
               
               Conread position:60-339
               
               
               Cow position:chr16:30305617-30305893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 34

               
               
               Conread position:60-355
               
               
               Cow position:chr16:11134785-11135078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 96

               
               
               Conread position:60-368
               
               
               Cow position:chr16:16597759-16597452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 96

               
               
               Conread position:60-381
               
               
               Cow position:chr16:56082162-56082483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):89, 238

               
               
               Conread position:60-382
               
               
               Cow position:chr16:33198233-33198556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 31

               
               
               Conread position:60-382
               
               
               Cow position:chr16:56850548-56850221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):106, 127

               
               
               Conread position:60-383
               
               
               Cow position:chr16:9905296-9904970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 249

               
               
               Conread position:60-384
               
               
               Cow position:chr16:13611239-13611577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):88, 10

               
               
               Conread position:60-384
               
               
               Cow position:chr16:13698718-13698388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):89, 129

               
               
               Conread position:60-384
               
               
               Cow position:chr16:23564338-23564012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):42, 127

               
               
               Conread position:60-384
               
               
               Cow position:chr16:29159313-29159006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):111, 35

               
               
               Conread position:60-384
               
               
               Cow position:chr16:31078903-31079221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):204, 31

               
               
               Conread position:60-384
               
               
               Cow position:chr16:45813498-45813827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 161

               
               
               Conread position:61-218
               
               
               Cow position:chr16:51393188-51393348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 118

               
               
               Conread position:61-269
               
               
               Cow position:chr16:45047047-45046828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):79, 170

               
               
               Conread position:61-301
               
               
               Cow position:chr16:7626352-7626120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):202, 30

               
               
               Conread position:61-332
               
               
               Cow position:chr16:44239626-44239332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:61-364
               
               
               Cow position:chr16:20872210-20871923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):126, 25

               
               
               Conread position:61-378
               
               
               Cow position:chr16:12108172-12108504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):83, 241

               
               
               Conread position:61-381
               
               
               Cow position:chr16:19644085-19643768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 66

               
               
               Conread position:61-381
               
               
               Cow position:chr16:54709854-54710154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):234, 66

               
               
               Conread position:61-382
               
               
               Cow position:chr16:13990165-13989860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):201, 66

               
               
               Conread position:61-384
               
               
               Cow position:chr16:27723410-27723089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):225, 66

               
               
               Conread position:61-384
               
               
               Cow position:chr16:45348589-45348262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 134

               
               
               Conread position:61-389
               
               
               Cow position:chr16:54226415-54226727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):33, 60

               
               
               Conread position:62-247
               
               
               Cow position:chr16:15251862-15252036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:62-258
               
               
               Cow position:chr16:40029687-40029881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:62-378
               
               
               Cow position:chr16:33595750-33596051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):202, 90

               
               
               Conread position:62-382
               
               
               Cow position:chr16:5907557-5907229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):86, 32

               
               
               Conread position:62-382
               
               
               Cow position:chr16:47519030-47518716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:62-384
               
               
               Cow position:chr16:238464-238142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):218, 61

               
               
               Conread position:62-384
               
               
               Cow position:chr16:3047144-3047465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:62-384
               
               
               Cow position:chr16:4275544-4275865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:62-384
               
               
               Cow position:chr16:7441902-7442226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):84, 113

               
               
               Conread position:62-384
               
               
               Cow position:chr16:54579363-54579046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 94

               
               
               Conread position:63-223
               
               
               Cow position:chr16:46184358-46184195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:63-225
               
               
               Cow position:chr16:3938815-3938975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):123, 96

               
               
               Conread position:63-265
               
               
               Cow position:chr16:30908752-30908951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 78

               
               
               Conread position:63-304
               
               
               Cow position:chr16:56285497-56285727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):34, 57

               
               
               Conread position:63-378
               
               
               Cow position:chr16:6262652-6262975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 202

               
               
               Conread position:64-257
               
               
               Cow position:chr16:17474952-17474769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:64-272
               
               
               Cow position:chr16:35297598-35297394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):193, 114

               
               
               Conread position:64-279
               
               
               Cow position:chr16:7546640-7546845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):121, 62

               
               
               Conread position:64-282
               
               
               Cow position:chr16:17460373-17460145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:64-289
               
               
               Cow position:chr16:9959025-9958800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):200, 87

               
               
               Conread position:64-291
               
               
               Cow position:chr16:48613282-48613505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:64-327
               
               
               Cow position:chr16:31561950-31561685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):198, 83

               
               
               Conread position:64-331
               
               
               Cow position:chr16:26030680-26030955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:64-384
               
               
               Cow position:chr16:8239668-8239989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:64-384
               
               
               Cow position:chr16:14106840-14106522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 94

               
               
               Conread position:64-384
               
               
               Cow position:chr16:41752385-41752696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):64, 120

               
               
               Conread position:64-384
               
               
               Cow position:chr16:47643630-47643291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:64-384
               
               
               Cow position:chr16:48095573-48095885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 76

               
               
               Conread position:64-385
               
               
               Cow position:chr16:29766516-29766211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):128, 58

               
               
               Conread position:66-262
               
               
               Cow position:chr16:16025638-16025435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:66-383
               
               
               Cow position:chr16:53089139-53089463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):56, 185

               
               
               Conread position:67-384
               
               
               Cow position:chr16:38708643-38708954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 181

               
               
               Conread position:68-238
               
               
               Cow position:chr16:51143991-51143822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):86, 78

               
               
               Conread position:68-248
               
               
               Cow position:chr16:15949316-15949495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):125, 106

               
               
               Conread position:68-252
               
               
               Cow position:chr16:4507883-4507705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:68-282
               
               
               Cow position:chr16:32893811-32893606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):196, 59

               
               
               Conread position:68-385
               
               
               Cow position:chr16:16402127-16402449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):58, 171

               
               
               Conread position:69-213
               
               
               Cow position:chr16:8083736-8083882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):63, 73

               
               
               Conread position:69-272
               
               
               Cow position:chr16:7812884-7812678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):60, 108

               
               
               Conread position:69-352
               
               
               Cow position:chr16:29038108-29037820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):75, 107

               
               
               Conread position:69-384
               
               
               Cow position:chr16:15761960-15762283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 120

               
               
               Conread position:69-384
               
               
               Cow position:chr16:31348571-31348891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):69, 23

               
               
               Conread position:71-263
               
               
               Cow position:chr16:17736417-17736236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):143, 56

               
               
               Conread position:71-363
               
               
               Cow position:chr16:14125310-14125041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):224, 43

               
               
               Conread position:72-208
               
               
               Cow position:chr16:41653160-41653026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:72-265
               
               
               Cow position:chr16:34204877-34205068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:72-290
               
               
               Cow position:chr16:31241104-31241320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 114

               
               
               Conread position:72-307
               
               
               Cow position:chr16:12010286-12010047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):62, 219

               
               
               Conread position:72-332
               
               
               Cow position:chr16:12543179-12542910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:72-332
               
               
               Cow position:chr16:32536828-32536571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):51, 46

               
               
               Conread position:72-341
               
               
               Cow position:chr16:31565553-31565823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):56, 88

               
               
               Conread position:72-346
               
               
               Cow position:chr16:21381384-21381647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):187, 54

               
               
               Conread position:72-368
               
               
               Cow position:chr16:4910334-4910634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 105

               
               
               Conread position:72-378
               
               
               Cow position:chr16:22850516-22850211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):72, 172

               
               
               Conread position:72-378
               
               
               Cow position:chr16:26676501-26676804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):230, 56

               
               
               Conread position:72-378
               
               
               Cow position:chr16:54664611-54664917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):25, 75

               
               
               Conread position:72-383
               
               
               Cow position:chr16:42201093-42200775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):77, 234

               
               
               Conread position:72-384
               
               
               Cow position:chr16:8841085-8840769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):33, 211

               
               
               Conread position:72-384
               
               
               Cow position:chr16:29380445-29380130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):72, 108

               
               
               Conread position:72-384
               
               
               Cow position:chr16:33646203-33645891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 79

               
               
               Conread position:72-384
               
               
               Cow position:chr16:48146466-48146781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):49, 227

               
               
               Conread position:72-385
               
               
               Cow position:chr16:23729730-23730051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 74

               
               
               Conread position:73-365
               
               
               Cow position:chr16:48145219-48145507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):164, 65

               
               
               Conread position:73-384
               
               
               Cow position:chr16:10505001-10504709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 13

               
               
               Conread position:73-384
               
               
               Cow position:chr16:14568304-14568605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):98, 66

               
               
               Conread position:74-231
               
               
               Cow position:chr16:29060570-29060407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:74-271
               
               
               Cow position:chr16:31484480-31484673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:161
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):112, 68

               
               
               Conread position:74-379
               
               
               Cow position:chr16:20205650-20205339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:74-383
               
               
               Cow position:chr16:25387155-25386858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 26

               
               
               Conread position:74-384
               
               
               Cow position:chr16:24703036-24702728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):84, 14

               
               
               Conread position:76-368
               
               
               Cow position:chr16:16571084-16570807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):190, 68

               
               
               Conread position:79-258
               
               
               Cow position:chr16:39385670-39385494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:79-346
               
               
               Cow position:chr16:12523239-12522972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):70, 26

               
               
               Conread position:79-348
               
               
               Cow position:chr16:42864554-42864813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):70, 96

               
               
               Conread position:79-366
               
               
               Cow position:chr16:2417405-2417695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):49, 78

               
               
               Conread position:79-381
               
               
               Cow position:chr16:3614918-3614626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):191, 31

               
               
               Conread position:80-371
               
               
               Cow position:chr16:48917655-48917356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 97

               
               
               Conread position:81-318
               
               
               Cow position:chr16:45109029-45108791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):85, 103

               
               
               Conread position:83-349
               
               
               Cow position:chr16:27701086-27701341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):181, 65

               
               
               Conread position:83-353
               
               
               Cow position:chr16:12036500-12036770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 43

               
               
               Conread position:83-368
               
               
               Cow position:chr16:13578678-13578969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):43, 115

               
               
               Conread position:83-368
               
               
               Cow position:chr16:46807361-46807640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 12

               
               
               Conread position:83-378
               
               
               Cow position:chr16:31269320-31269026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):61, 103

               
               
               Conread position:83-384
               
               
               Cow position:chr16:56522296-56522598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:86-338
               
               
               Cow position:chr16:1220004-1220260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 53

               
               
               Conread position:86-384
               
               
               Cow position:chr16:33267895-33267592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):58, 180

               
               
               Conread position:88-382
               
               
               Cow position:chr16:47964649-47964937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:214
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):21, 41

               
               
               Conread position:88-384
               
               
               Cow position:chr16:3246034-3246330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):176, 59

               
               
               Conread position:89-384
               
               
               Cow position:chr16:41578397-41578102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 49

               
               
               Conread position:92-384
               
               
               Cow position:chr16:4059534-4059231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):36, 98

               
               
               Conread position:95-368
               
               
               Cow position:chr16:37452451-37452723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:95-384
               
               
               Cow position:chr16:11615078-11615356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):60, 84

               
               
               Conread position:95-384
               
               
               Cow position:chr16:33226373-33226662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 119

               
               
               Conread position:97-384
               
               
               Cow position:chr16:48006331-48006611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):167, 49

               
               
               Conread position:99-385
               
               
               Cow position:chr16:45610149-45609865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):47, 87

               
               
               Conread position:102-384
               
               
               Cow position:chr16:54679821-54679545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):167, 57

               
               
               Conread position:104-384
               
               
               Cow position:chr16:33482605-33482314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 64

               
               
               Conread position:105-386
               
               
               Cow position:chr16:48086718-48086993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):160, 33

               
               
               Conread position:107-378
               
               
               Cow position:chr16:13969207-13969491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 86

               
               
               Conread position:108-378
               
               
               Cow position:chr16:601100-600834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):46, 68

               
               
               Conread position:112-281
               
               
               Cow position:chr16:19815104-19815268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):152, 11

               
               
               Conread position:115-384
               
               
               Cow position:chr16:31122104-31122369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):150, 145

               
               
               Conread position:127-356
               
               
               Cow position:chr16:48545957-48545725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):22, 59

               
               
               Conread position:127-384
               
               
               Cow position:chr16:41689828-41689572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):9, 174

               
               
               Conread position:128-297
               
               
               Cow position:chr16:33530542-33530372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:128-340
               
               
               Cow position:chr16:40700606-40700808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-378
               
               
               Cow position:chr16:8933297-8933541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):136, 18

               
               
               Conread position:128-378
               
               
               Cow position:chr16:41696959-41697203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):136, 157

               
               
               Conread position:128-382
               
               
               Cow position:chr16:53830459-53830707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):127, 111

               
               
               Conread position:128-383
               
               
               Cow position:chr16:7550099-7549845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):136, 23

               
               
               Conread position:128-383
               
               
               Cow position:chr16:24826206-24825949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):141, 158

               
               
               Conread position:128-383
               
               
               Cow position:chr16:29608640-29608396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:128-384
               
               
               Cow position:chr16:5636717-5636465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):136, 93

               
               
               Conread position:128-384
               
               
               Cow position:chr16:35623116-35623365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 56

               
               
               Conread position:128-384
               
               
               Cow position:chr16:39616855-39616619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):226, 92

               
               
               Conread position:128-387
               
               
               Cow position:chr16:47855069-47854816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):252, 19

               
               
               Conread position:129-257
               
               
               Cow position:chr16:20265431-20265559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:129-343
               
               
               Cow position:chr16:53792689-53792901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):92, 17

               
               
               Conread position:129-352
               
               
               Cow position:chr16:33054349-33054575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):133, 161

               
               
               Conread position:129-378
               
               
               Cow position:chr16:39394699-39394459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):138, 9

               
               
               Conread position:129-384
               
               
               Cow position:chr16:11806802-11806552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):53, 17

               
               
               Conread position:129-384
               
               
               Cow position:chr16:17282790-17282541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):134, 92

               
               
               Conread position:129-384
               
               
               Cow position:chr16:28922907-28922661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 143

               
               
               Conread position:129-384
               
               
               Cow position:chr16:49169251-49169509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 23

               
               
               Conread position:130-376
               
               
               Cow position:chr16:25380364-25380609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):116, 156

               
               
               Conread position:130-383
               
               
               Cow position:chr16:35188378-35188131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):134, 26

               
               
               Conread position:130-384
               
               
               Cow position:chr16:19408399-19408640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):134, 22

               
               
               Conread position:131-265
               
               
               Cow position:chr16:24591983-24591848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:131-278
               
               
               Cow position:chr16:19003404-19003551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):134, 20

               
               
               Conread position:131-300
               
               
               Cow position:chr16:17291891-17292061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):24, 158

               
               
               Conread position:131-303
               
               
               Cow position:chr16:15953691-15953863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):119, 21

               
               
               Conread position:131-320
               
               
               Cow position:chr16:45785867-45785675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:131-330
               
               
               Cow position:chr16:496246-496445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):133, 155

               
               
               Conread position:131-332
               
               
               Cow position:chr16:8530751-8530956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:131-334
               
               
               Cow position:chr16:46430023-46430226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):133, 71

               
               
               Conread position:131-345
               
               
               Cow position:chr16:7980918-7980707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):133, 22

               
               
               Conread position:131-347
               
               
               Cow position:chr16:3114669-3114451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:131-366
               
               
               Cow position:chr16:18141195-18141434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):21, 101

               
               
               Conread position:131-377
               
               
               Cow position:chr16:17903515-17903766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:131-378
               
               
               Cow position:chr16:54734364-54734128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-383
               
               
               Cow position:chr16:5364031-5363773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:131-383
               
               
               Cow position:chr16:7499180-7498938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):133, 112

               
               
               Conread position:131-383
               
               
               Cow position:chr16:16548737-16548487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):133, 22

               
               
               Conread position:131-383
               
               
               Cow position:chr16:48340563-48340818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):10, 155

               
               
               Conread position:131-384
               
               
               Cow position:chr16:15960160-15960415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:131-384
               
               
               Cow position:chr16:17945651-17945398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 241

               
               
               Conread position:131-384
               
               
               Cow position:chr16:20025568-20025323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):133, 16

               
               
               Conread position:131-384
               
               
               Cow position:chr16:39172018-39172279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):133, 72

               
               
               Conread position:131-384
               
               
               Cow position:chr16:43105385-43105637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):13, 81

               
               
               Conread position:131-384
               
               
               Cow position:chr16:50688651-50688400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):133, 156

               
               
               Conread position:132-351
               
               
               Cow position:chr16:34220315-34220093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:132-362
               
               
               Cow position:chr16:21040157-21039926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):23, 15

               
               
               Conread position:132-368
               
               
               Cow position:chr16:10945312-10945538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 29

               
               
               Conread position:132-378
               
               
               Cow position:chr16:14758864-14758616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 27

               
               
               Conread position:132-384
               
               
               Cow position:chr16:10773249-10773009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:132-384
               
               
               Cow position:chr16:12634012-12633762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):132, 19

               
               
               Conread position:132-384
               
               
               Cow position:chr16:17627058-17626806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 36

               
               
               Conread position:132-384
               
               
               Cow position:chr16:20633744-20634002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):24, 128

               
               
               Conread position:132-384
               
               
               Cow position:chr16:40562360-40562107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):132, 29

               
               
               Conread position:132-384
               
               
               Cow position:chr16:48190886-48191125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:133-280
               
               
               Cow position:chr16:33235036-33235181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):133, 86

               
               
               Conread position:133-368
               
               
               Cow position:chr16:43675002-43674767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):75, 114

               
               
               Conread position:133-377
               
               
               Cow position:chr16:18052458-18052214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:133-383
               
               
               Cow position:chr16:42633618-42633873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):145, 28

               
               
               Conread position:133-384
               
               
               Cow position:chr16:43800791-43801043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):172, 48

               
               
               Conread position:134-347
               
               
               Cow position:chr16:30358938-30359147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:134-384
               
               
               Cow position:chr16:5257123-5256876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):130, 214

               
               
               Conread position:135-368
               
               
               Cow position:chr16:26323396-26323622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):135, 18

               
               
               Conread position:135-378
               
               
               Cow position:chr16:52133394-52133630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):129, 12

               
               
               Conread position:135-384
               
               
               Cow position:chr16:50453890-50453638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:136-271
               
               
               Cow position:chr16:15715833-15715971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 26

               
               
               Conread position:136-384
               
               
               Cow position:chr16:3634241-3633989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):83, 88

               
               
               Conread position:136-384
               
               
               Cow position:chr16:28833966-28833715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):129, 23

               
               
               Conread position:137-374
               
               
               Cow position:chr16:11940159-11939928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:137-383
               
               
               Cow position:chr16:48494432-48494676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:137-384
               
               
               Cow position:chr16:17289072-17288817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 146

               
               
               Conread position:137-385
               
               
               Cow position:chr16:8811972-8812207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:137-385
               
               
               Cow position:chr16:20069954-20069702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):127, 9

               
               
               Conread position:138-303
               
               
               Cow position:chr16:12133983-12133818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):17, 9

               
               
               Conread position:138-384
               
               
               Cow position:chr16:30715628-30715372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):17, 222

               
               
               Conread position:141-342
               
               
               Cow position:chr16:42241168-42240968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 99

               
               
               Conread position:141-354
               
               
               Cow position:chr16:16933239-16933026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):99, 28

               
               
               Conread position:142-384
               
               
               Cow position:chr16:4902708-4902465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 120

               
               
               Conread position:142-394
               
               
               Cow position:chr16:6344323-6344577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):122, 74

               
               
               Conread position:146-378
               
               
               Cow position:chr16:22207192-22206958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):113, 15

               
               
               Conread position:146-384
               
               
               Cow position:chr16:6319318-6319074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:146-384
               
               
               Cow position:chr16:53086226-53086453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):160, 107

               
               
               Conread position:147-328
               
               
               Cow position:chr16:22919581-22919399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):146, 140

               
               
               Conread position:147-368
               
               
               Cow position:chr16:21317479-21317703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):117, 192

               
               
               Conread position:147-381
               
               
               Cow position:chr16:42340310-42340075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):117, 138

               
               
               Conread position:147-384
               
               
               Cow position:chr16:5836698-5836459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):93, 7

               
               
               Conread position:147-384
               
               
               Cow position:chr16:13195225-13195465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 56

               
               
               Conread position:147-384
               
               
               Cow position:chr16:14974430-14974656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):117, 69

               
               
               Conread position:147-384
               
               
               Cow position:chr16:30036877-30037115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):117, 93

               
               
               Conread position:147-384
               
               
               Cow position:chr16:36203506-36203741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 9

               
               
               Conread position:147-384
               
               
               Cow position:chr16:37669623-37669860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):115, 145

               
               
               Conread position:148-257
               
               
               Cow position:chr16:41806988-41807098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:148-382
               
               
               Cow position:chr16:21761857-21762093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):118, 129

               
               
               Conread position:148-383
               
               
               Cow position:chr16:11105665-11105430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):117, 16

               
               
               Conread position:148-383
               
               
               Cow position:chr16:42345500-42345726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):116, 73

               
               
               Conread position:148-384
               
               
               Cow position:chr16:11791123-11790893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):116, 73

               
               
               Conread position:151-275
               
               
               Cow position:chr16:40540442-40540321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):113, 89

               
               
               Conread position:151-383
               
               
               Cow position:chr16:4626281-4626514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):113, 177

               
               
               Conread position:151-384
               
               
               Cow position:chr16:53627318-53627551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):113, 135

               
               
               Conread position:152-363
               
               
               Cow position:chr16:42176754-42176541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):111, 15

               
               
               Conread position:153-384
               
               
               Cow position:chr16:39401908-39402122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):110, 37

               
               
               Conread position:154-383
               
               
               Cow position:chr16:27659639-27659866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):84, 124

               
               
               Conread position:155-366
               
               
               Cow position:chr16:27160758-27160971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:155-374
               
               
               Cow position:chr16:50667397-50667172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:155-382
               
               
               Cow position:chr16:18402792-18402563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):109, 25

               
               
               Conread position:155-384
               
               
               Cow position:chr16:11102715-11102948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:155-384
               
               
               Cow position:chr16:48493286-48493055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):109, 131

               
               
               Conread position:156-384
               
               
               Cow position:chr16:8076397-8076632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:156-384
               
               
               Cow position:chr16:12060521-12060293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):108, 121

               
               
               Conread position:157-383
               
               
               Cow position:chr16:23738285-23738056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):107, 162

               
               
               Conread position:161-339
               
               
               Cow position:chr16:50370694-50370517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):96, 131

               
               
               Conread position:161-384
               
               
               Cow position:chr16:570820-571037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):103, 72

               
               
               Conread position:161-384
               
               
               Cow position:chr16:4698888-4699104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):101, 139

               
               
               Conread position:161-384
               
               
               Cow position:chr16:52889312-52889532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):102, 30

               
               
               Conread position:166-383
               
               
               Cow position:chr16:16096831-16096613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):109, 66

               
               
               Conread position:167-383
               
               
               Cow position:chr16:45645595-45645808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):5, 11

               
               
               Conread position:168-381
               
               
               Cow position:chr16:52790147-52789937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):97, 33

               
               
               Conread position:174-383
               
               
               Cow position:chr16:53891700-53891904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):113, 8

               
               
               Conread position:174-384
               
               
               Cow position:chr16:39513989-39514199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):82, 40

               
               
               Conread position:176-384
               
               
               Cow position:chr16:7077656-7077867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):6, 89

               
               
               Conread position:182-384
               
               
               Cow position:chr16:39646624-39646425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):82, 110

               
               
               Conread position:185-384
               
               
               Cow position:chr16:42217614-42217810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):85, 112

               
               
               Conread position:185-384
               
               
               Cow position:chr16:54084112-54083911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:185-388
               
               
               Cow position:chr16:35937413-35937210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):84, 40

               
               
               Conread position:187-384
               
               
               Cow position:chr16:11008419-11008221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):77, 190

               
               
               Conread position:191-384
               
               
               Cow position:chr16:8279722-8279910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 36

               
               
               Conread position:191-384
               
               
               Cow position:chr16:13752062-13752248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):73, 92

               
               
               Conread position:191-384
               
               
               Cow position:chr16:50521547-50521354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 94

               
               
               Conread position:192-384
               
               
               Cow position:chr16:22860700-22860884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):124, 72

               
               
               Conread position:193-383
               
               
               Cow position:chr16:13232881-13233071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 24

               
               
               Conread position:194-378
               
               
               Cow position:chr16:594157-594344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 67

               
               
               Conread position:194-384
               
               
               Cow position:chr16:4981310-4981506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:194-384
               
               
               Cow position:chr16:18037016-18036826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):19, 153

               
               
               Conread position:194-384
               
               
               Cow position:chr16:53048619-53048431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 101

               
               
               Conread position:194-385
               
               
               Cow position:chr16:37380337-37380141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:197-344
               
               
               Cow position:chr16:22123906-22124050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 29

               
               
               Conread position:197-383
               
               
               Cow position:chr16:10650824-10651013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):69, 97

               
               
               Conread position:199-383
               
               
               Cow position:chr16:45753394-45753573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):65, 14

               
               
               Conread position:202-384
               
               
               Cow position:chr16:11568064-11568241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 25

               
               
               Conread position:202-384
               
               
               Cow position:chr16:39238005-39237823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 150

               
               
               Conread position:204-343
               
               
               Cow position:chr16:35477358-35477499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:210-384
               
               
               Cow position:chr16:4145114-4144940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):54, 33

               
               
               Conread position:229-383
               
               
               Cow position:chr16:24148193-24148035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:237-384
               
               
               Cow position:chr16:35168756-35168605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):11, 103

               
               
               Conread position:246-384
               
               
               Cow position:chr16:39417105-39417241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):20, 53

               
               
               Conread position:1-262
               
               
               Cow position:chr17:21718696-21718958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):41, 154

               
               
               Conread position:1-271
               
               
               Cow position:chr17:1463028-1463302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):27, 183

               
               
               Conread position:3-384
               
               
               Cow position:chr17:11912205-11912580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 145

               
               
               Conread position:3-385
               
               
               Cow position:chr17:5224673-5224317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:252
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):262, 27

               
               
               Conread position:5-369
               
               
               Cow position:chr17:27730840-27730472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):183, 59

               
               
               Conread position:6-210
               
               
               Cow position:chr17:10037705-10037498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 47

               
               
               Conread position:6-336
               
               
               Cow position:chr17:24995293-24994959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:8-230
               
               
               Cow position:chr17:25702894-25702672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):141, 29

               
               
               Conread position:8-378
               
               
               Cow position:chr17:24928765-24928400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):146, 17

               
               
               Conread position:10-339
               
               
               Cow position:chr17:29961941-29961616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:11-252
               
               
               Cow position:chr17:36522760-36522998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):151, 12

               
               
               Conread position:11-373
               
               
               Cow position:chr17:15684795-15684441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:12-257
               
               
               Cow position:chr17:21677182-21676934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:17-384
               
               
               Cow position:chr17:20992753-20993123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:18-383
               
               
               Cow position:chr17:5280374-5280725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):151, 35

               
               
               Conread position:18-384
               
               
               Cow position:chr17:30529268-30529624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):80, 35

               
               
               Conread position:19-347
               
               
               Cow position:chr17:37815911-37816236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:19-378
               
               
               Cow position:chr17:8597824-8598182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:249
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):9, 143

               
               
               Conread position:19-378
               
               
               Cow position:chr17:22775651-22775298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):142, 75

               
               
               Conread position:20-378
               
               
               Cow position:chr17:24149464-24149107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):70, 28

               
               
               Conread position:21-386
               
               
               Cow position:chr17:27795934-27795561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):133, 149

               
               
               Conread position:23-234
               
               
               Cow position:chr17:31231680-31231894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):124, 114

               
               
               Conread position:25-260
               
               
               Cow position:chr17:12963338-12963566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):28, 116

               
               
               Conread position:26-368
               
               
               Cow position:chr17:22135986-22135652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 151

               
               
               Conread position:26-386
               
               
               Cow position:chr17:15664950-15664589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 24

               
               
               Conread position:27-346
               
               
               Cow position:chr17:33154885-33155200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 26

               
               
               Conread position:28-379
               
               
               Cow position:chr17:14025635-14025990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:242
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):121, 275

               
               
               Conread position:29-218
               
               
               Cow position:chr17:27606780-27606600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:29-244
               
               
               Cow position:chr17:33140655-33140439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):125, 35

               
               
               Conread position:29-282
               
               
               Cow position:chr17:7959450-7959198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):206, 116

               
               
               Conread position:29-317
               
               
               Cow position:chr17:24168877-24168590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):148, 35

               
               
               Conread position:29-326
               
               
               Cow position:chr17:10023323-10023029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):125, 24

               
               
               Conread position:29-377
               
               
               Cow position:chr17:13940054-13940394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):120, 20

               
               
               Conread position:29-378
               
               
               Cow position:chr17:17059688-17059355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 21

               
               
               Conread position:29-384
               
               
               Cow position:chr17:14652515-14652863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:249
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):120, 34

               
               
               Conread position:29-384
               
               
               Cow position:chr17:28468398-28468053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):25, 194

               
               
               Conread position:30-378
               
               
               Cow position:chr17:22056749-22057099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):94, 27

               
               
               Conread position:31-332
               
               
               Cow position:chr17:35149260-35149559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):151, 26

               
               
               Conread position:31-345
               
               
               Cow position:chr17:26513461-26513143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):33, 56

               
               
               Conread position:31-346
               
               
               Cow position:chr17:33067298-33067605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):226, 126

               
               
               Conread position:31-377
               
               
               Cow position:chr17:34860642-34860307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):131, 90

               
               
               Conread position:31-384
               
               
               Cow position:chr17:11381457-11381801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):127, 26

               
               
               Conread position:31-384
               
               
               Cow position:chr17:13922754-13922396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:258
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):12, 113

               
               
               Conread position:31-384
               
               
               Cow position:chr17:17682644-17682986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):10, 91

               
               
               Conread position:31-384
               
               
               Cow position:chr17:26233560-26233909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):138, 22

               
               
               Conread position:32-239
               
               
               Cow position:chr17:21236791-21236584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):102, 21

               
               
               Conread position:32-332
               
               
               Cow position:chr17:8516315-8516619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):145, 21

               
               
               Conread position:32-348
               
               
               Cow position:chr17:5012107-5011802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):122, 20

               
               
               Conread position:32-371
               
               
               Cow position:chr17:11839990-11839646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:32-379
               
               
               Cow position:chr17:1469631-1469299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):232, 18

               
               
               Conread position:32-384
               
               
               Cow position:chr17:21959417-21959770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:33-337
               
               
               Cow position:chr17:33164553-33164853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):122, 110

               
               
               Conread position:33-350
               
               
               Cow position:chr17:25886097-25885771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:33-366
               
               
               Cow position:chr17:14049945-14050267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:33-383
               
               
               Cow position:chr17:21972861-21973215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):117, 24

               
               
               Conread position:34-211
               
               
               Cow position:chr17:22241274-22241094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 131

               
               
               Conread position:34-247
               
               
               Cow position:chr17:3387987-3387771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 138

               
               
               Conread position:34-328
               
               
               Cow position:chr17:12325504-12325790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:34-382
               
               
               Cow position:chr17:14033374-14033721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):36, 88

               
               
               Conread position:34-384
               
               
               Cow position:chr17:14004085-14003735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):62, 106

               
               
               Conread position:34-388
               
               
               Cow position:chr17:38615225-38614869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):120, 19

               
               
               Conread position:35-282
               
               
               Cow position:chr17:36432168-36431914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 145

               
               
               Conread position:35-368
               
               
               Cow position:chr17:18490796-18490471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):214, 18

               
               
               Conread position:35-375
               
               
               Cow position:chr17:12510718-12511049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:249
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):32, 68

               
               
               Conread position:35-385
               
               
               Cow position:chr17:22128181-22127843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):131, 15

               
               
               Conread position:36-229
               
               
               Cow position:chr17:6766995-6767189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):48, 16

               
               
               Conread position:36-317
               
               
               Cow position:chr17:25875657-25875382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):129, 17

               
               
               Conread position:37-272
               
               
               Cow position:chr17:26637595-26637831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:37-297
               
               
               Cow position:chr17:40673635-40673375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):112, 27

               
               
               Conread position:37-307
               
               
               Cow position:chr17:21863921-21863648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):112, 27

               
               
               Conread position:37-348
               
               
               Cow position:chr17:37523209-37522897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):117, 139

               
               
               Conread position:37-372
               
               
               Cow position:chr17:3153305-3153642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 168

               
               
               Conread position:37-384
               
               
               Cow position:chr17:11618849-11618500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):99, 16

               
               
               Conread position:37-384
               
               
               Cow position:chr17:24786757-24787100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 113

               
               
               Conread position:37-384
               
               
               Cow position:chr17:26000380-26000034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):112, 16

               
               
               Conread position:38-250
               
               
               Cow position:chr17:9077951-9078170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:38-345
               
               
               Cow position:chr17:5288424-5288124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):226, 15

               
               
               Conread position:39-238
               
               
               Cow position:chr17:11920903-11921102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):108, 13

               
               
               Conread position:39-297
               
               
               Cow position:chr17:20904847-20905098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):225, 17

               
               
               Conread position:39-378
               
               
               Cow position:chr17:16371525-16371179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):20, 86

               
               
               Conread position:39-384
               
               
               Cow position:chr17:25917146-25916813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):174, 25

               
               
               Conread position:41-237
               
               
               Cow position:chr17:5693393-5693591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):19, 101

               
               
               Conread position:41-312
               
               
               Cow position:chr17:35193558-35193834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):94, 118

               
               
               Conread position:41-369
               
               
               Cow position:chr17:40639207-40638882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 54

               
               
               Conread position:42-252
               
               
               Cow position:chr17:7571367-7571152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 121

               
               
               Conread position:43-282
               
               
               Cow position:chr17:37857433-37857675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):90, 21

               
               
               Conread position:43-322
               
               
               Cow position:chr17:5421938-5421654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):111, 133

               
               
               Conread position:43-382
               
               
               Cow position:chr17:12447144-12447483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 81

               
               
               Conread position:45-343
               
               
               Cow position:chr17:25511495-25511199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 12

               
               
               Conread position:45-344
               
               
               Cow position:chr17:20090371-20090673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 253

               
               
               Conread position:45-378
               
               
               Cow position:chr17:21292783-21293117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):88, 47

               
               
               Conread position:45-384
               
               
               Cow position:chr17:11664321-11664671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 248

               
               
               Conread position:46-270
               
               
               Cow position:chr17:29245688-29245473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):213, 80

               
               
               Conread position:46-292
               
               
               Cow position:chr17:26072506-26072751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):98, 18

               
               
               Conread position:46-325
               
               
               Cow position:chr17:12959353-12959081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):51, 19

               
               
               Conread position:46-348
               
               
               Cow position:chr17:5372274-5372576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 100

               
               
               Conread position:46-352
               
               
               Cow position:chr17:20889616-20889326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):211, 7

               
               
               Conread position:46-368
               
               
               Cow position:chr17:11036166-11035860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:46-383
               
               
               Cow position:chr17:12536218-12536550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 78

               
               
               Conread position:46-384
               
               
               Cow position:chr17:1634241-1634572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 11

               
               
               Conread position:46-397
               
               
               Cow position:chr17:20884777-20884429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):107, 7

               
               
               Conread position:47-237
               
               
               Cow position:chr17:20836342-20836155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:47-328
               
               
               Cow position:chr17:3202159-3202440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:47-343
               
               
               Cow position:chr17:17180296-17180002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):89, 6

               
               
               Conread position:47-355
               
               
               Cow position:chr17:9770758-9770457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):109, 116

               
               
               Conread position:47-383
               
               
               Cow position:chr17:4105740-4106068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:247
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):86, 10

               
               
               Conread position:47-383
               
               
               Cow position:chr17:4121475-4121804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):86, 10

               
               
               Conread position:47-383
               
               
               Cow position:chr17:8836697-8837031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:47-384
               
               
               Cow position:chr17:7810493-7810817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 139

               
               
               Conread position:48-224
               
               
               Cow position:chr17:30493905-30494083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):99, 139

               
               
               Conread position:48-244
               
               
               Cow position:chr17:25121997-25122187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:48-273
               
               
               Cow position:chr17:13414114-13414341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:48-324
               
               
               Cow position:chr17:25584494-25584216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):89, 5

               
               
               Conread position:48-384
               
               
               Cow position:chr17:1256247-1256583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:48-384
               
               
               Cow position:chr17:25128103-25128431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 9

               
               
               Conread position:48-385
               
               
               Cow position:chr17:21744189-21743853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):13, 82

               
               
               Conread position:49-309
               
               
               Cow position:chr17:37340780-37341049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 96

               
               
               Conread position:49-332
               
               
               Cow position:chr17:4264477-4264191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 94

               
               
               Conread position:49-348
               
               
               Cow position:chr17:31465009-31465298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 89

               
               
               Conread position:49-354
               
               
               Cow position:chr17:19783307-19783010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):210, 102

               
               
               Conread position:49-355
               
               
               Cow position:chr17:7590205-7590511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 242

               
               
               Conread position:49-365
               
               
               Cow position:chr17:7802921-7803237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):71, 214

               
               
               Conread position:49-371
               
               
               Cow position:chr17:36814616-36814290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:49-378
               
               
               Cow position:chr17:11831868-11832195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):215, 8

               
               
               Conread position:49-383
               
               
               Cow position:chr17:33275508-33275829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):215, 79

               
               
               Conread position:50-203
               
               
               Cow position:chr17:20782947-20783096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:50-206
               
               
               Cow position:chr17:8809258-8809410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:50-215
               
               
               Cow position:chr17:24116864-24116696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 160

               
               
               Conread position:50-220
               
               
               Cow position:chr17:17782302-17782136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:50-229
               
               
               Cow position:chr17:30977266-30977092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:50-230
               
               
               Cow position:chr17:8663757-8663575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):102, 132

               
               
               Conread position:50-235
               
               
               Cow position:chr17:19543982-19544167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):104, 90

               
               
               Conread position:50-235
               
               
               Cow position:chr17:33288241-33288413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:50-238
               
               
               Cow position:chr17:36467939-36468128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:50-243
               
               
               Cow position:chr17:43860043-43859855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 90

               
               
               Conread position:50-247
               
               
               Cow position:chr17:5179515-5179315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:50-248
               
               
               Cow position:chr17:36573869-36574070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):53, 140

               
               
               Conread position:50-249
               
               
               Cow position:chr17:6761602-6761796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):10, 79

               
               
               Conread position:50-249
               
               
               Cow position:chr17:44798692-44798887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:50-252
               
               
               Cow position:chr17:6787190-6786985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:50-255
               
               
               Cow position:chr17:15883925-15883717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):94, 138

               
               
               Conread position:50-255
               
               
               Cow position:chr17:26225279-26225073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:50-271
               
               
               Cow position:chr17:20929495-20929270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:50-282
               
               
               Cow position:chr17:17035196-17034967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):214, 66

               
               
               Conread position:50-303
               
               
               Cow position:chr17:40276986-40276737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):211, 36

               
               
               Conread position:50-327
               
               
               Cow position:chr17:8815438-8815164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):13, 72

               
               
               Conread position:50-328
               
               
               Cow position:chr17:29995186-29995465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 15

               
               
               Conread position:50-332
               
               
               Cow position:chr17:34772759-34772469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):96, 126

               
               
               Conread position:50-332
               
               
               Cow position:chr17:40412829-40412555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:50-344
               
               
               Cow position:chr17:25800635-25800925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 14

               
               
               Conread position:50-348
               
               
               Cow position:chr17:21039808-21039517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 104

               
               
               Conread position:50-348
               
               
               Cow position:chr17:23280607-23280904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):96, 59

               
               
               Conread position:50-348
               
               
               Cow position:chr17:25126593-25126305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):214, 14

               
               
               Conread position:50-355
               
               
               Cow position:chr17:12289160-12289471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):115, 36

               
               
               Conread position:50-364
               
               
               Cow position:chr17:40694183-40694502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):94, 132

               
               
               Conread position:50-366
               
               
               Cow position:chr17:17222593-17222280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):98, 17

               
               
               Conread position:50-366
               
               
               Cow position:chr17:21806199-21806514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):94, 237

               
               
               Conread position:50-372
               
               
               Cow position:chr17:33793402-33793093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):213, 45

               
               
               Conread position:50-378
               
               
               Cow position:chr17:10528480-10528811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):209, 94

               
               
               Conread position:50-378
               
               
               Cow position:chr17:12946109-12946435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):214, 104

               
               
               Conread position:50-380
               
               
               Cow position:chr17:9824916-9824590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 7

               
               
               Conread position:50-380
               
               
               Cow position:chr17:25709965-25709626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):97, 118

               
               
               Conread position:50-382
               
               
               Cow position:chr17:12109057-12108724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:50-383
               
               
               Cow position:chr17:11277777-11278115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):104, 36

               
               
               Conread position:50-384
               
               
               Cow position:chr17:9854232-9853907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):94, 171

               
               
               Conread position:50-384
               
               
               Cow position:chr17:11101568-11101883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):217, 78

               
               
               Conread position:50-384
               
               
               Cow position:chr17:20157858-20157528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 104

               
               
               Conread position:50-384
               
               
               Cow position:chr17:21599429-21599764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):6, 138

               
               
               Conread position:50-384
               
               
               Cow position:chr17:23246436-23246129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 40

               
               
               Conread position:50-384
               
               
               Cow position:chr17:24974193-24973869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 89

               
               
               Conread position:50-384
               
               
               Cow position:chr17:25118137-25117807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):99, 137

               
               
               Conread position:50-384
               
               
               Cow position:chr17:25616496-25616176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 76

               
               
               Conread position:50-384
               
               
               Cow position:chr17:27058299-27058638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):94, 244

               
               
               Conread position:50-384
               
               
               Cow position:chr17:27274819-27274479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):16, 49

               
               
               Conread position:50-384
               
               
               Cow position:chr17:31480780-31481119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):94, 233

               
               
               Conread position:50-384
               
               
               Cow position:chr17:32989724-32989399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:50-384
               
               
               Cow position:chr17:32993376-32993701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:50-384
               
               
               Cow position:chr17:36791375-36791052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:50-384
               
               
               Cow position:chr17:40772080-40771752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):214, 101

               
               
               Conread position:50-385
               
               
               Cow position:chr17:30713596-30713265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 130

               
               
               Conread position:51-218
               
               
               Cow position:chr17:15103491-15103657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 35

               
               
               Conread position:51-241
               
               
               Cow position:chr17:1081456-1081264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):95, 13

               
               
               Conread position:51-268
               
               
               Cow position:chr17:31563436-31563649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):93, 6

               
               
               Conread position:51-345
               
               
               Cow position:chr17:35051869-35051563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):82, 251

               
               
               Conread position:51-368
               
               
               Cow position:chr17:18720204-18720516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):106, 6

               
               
               Conread position:51-378
               
               
               Cow position:chr17:7143105-7142789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):213, 13

               
               
               Conread position:51-384
               
               
               Cow position:chr17:24004621-24004300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:52-220
               
               
               Cow position:chr17:15333436-15333598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:52-366
               
               
               Cow position:chr17:34790818-34791131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 12

               
               
               Conread position:52-376
               
               
               Cow position:chr17:36864872-36864556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 77

               
               
               Conread position:52-378
               
               
               Cow position:chr17:21738617-21738952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):88, 242

               
               
               Conread position:52-382
               
               
               Cow position:chr17:40332028-40331684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):9, 184

               
               
               Conread position:52-384
               
               
               Cow position:chr17:15102642-15102967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 12

               
               
               Conread position:52-384
               
               
               Cow position:chr17:32138167-32138498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 241

               
               
               Conread position:52-404
               
               
               Cow position:chr17:24824493-24824148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:52-410
               
               
               Cow position:chr17:25189534-25189181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:53-235
               
               
               Cow position:chr17:20881568-20881743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:53-241
               
               
               Cow position:chr17:20913356-20913170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 92

               
               
               Conread position:53-247
               
               
               Cow position:chr17:17418724-17418525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 134

               
               
               Conread position:53-306
               
               
               Cow position:chr17:43315043-43315294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):212, 47

               
               
               Conread position:53-343
               
               
               Cow position:chr17:6318621-6318909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:53-348
               
               
               Cow position:chr17:18934503-18934210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 33

               
               
               Conread position:53-350
               
               
               Cow position:chr17:11962285-11962578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):8, 110

               
               
               Conread position:53-352
               
               
               Cow position:chr17:22051344-22051643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 99

               
               
               Conread position:53-378
               
               
               Cow position:chr17:1035348-1035674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):104, 12

               
               
               Conread position:53-384
               
               
               Cow position:chr17:3467998-3467684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):213, 74

               
               
               Conread position:53-384
               
               
               Cow position:chr17:7698302-7697974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):51, 163

               
               
               Conread position:53-384
               
               
               Cow position:chr17:21003583-21003911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 89

               
               
               Conread position:53-384
               
               
               Cow position:chr17:21489386-21489707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):12, 39

               
               
               Conread position:53-384
               
               
               Cow position:chr17:29355995-29356312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 76

               
               
               Conread position:53-384
               
               
               Cow position:chr17:32027200-32027541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 237

               
               
               Conread position:54-204
               
               
               Cow position:chr17:24612891-24612747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:54-225
               
               
               Cow position:chr17:13297632-13297456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):6, 120

               
               
               Conread position:54-235
               
               
               Cow position:chr17:26554762-26554589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):111, 33

               
               
               Conread position:54-245
               
               
               Cow position:chr17:2729671-2729856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:54-255
               
               
               Cow position:chr17:12215007-12215212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):66, 100

               
               
               Conread position:54-257
               
               
               Cow position:chr17:44234491-44234294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:54-326
               
               
               Cow position:chr17:25473035-25473304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 90

               
               
               Conread position:54-368
               
               
               Cow position:chr17:39606668-39606362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 38

               
               
               Conread position:54-376
               
               
               Cow position:chr17:17410546-17410216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:54-383
               
               
               Cow position:chr17:25612333-25612007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 80

               
               
               Conread position:54-384
               
               
               Cow position:chr17:11215647-11215974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 115

               
               
               Conread position:54-384
               
               
               Cow position:chr17:32349309-32348991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):210, 86

               
               
               Conread position:54-384
               
               
               Cow position:chr17:33288412-33288737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 92

               
               
               Conread position:54-384
               
               
               Cow position:chr17:35573993-35573680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):29, 58

               
               
               Conread position:54-390
               
               
               Cow position:chr17:908985-908656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 98

               
               
               Conread position:54-394
               
               
               Cow position:chr17:29714968-29715287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):210, 40

               
               
               Conread position:55-303
               
               
               Cow position:chr17:21471942-21472182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):100, 119

               
               
               Conread position:55-332
               
               
               Cow position:chr17:28982422-28982148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):204, 72

               
               
               Conread position:55-383
               
               
               Cow position:chr17:34078859-34079185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):16, 236

               
               
               Conread position:55-384
               
               
               Cow position:chr17:13243809-13244123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):209, 28

               
               
               Conread position:55-384
               
               
               Cow position:chr17:22564424-22564098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 53

               
               
               Conread position:55-384
               
               
               Cow position:chr17:27429801-27429499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):242, 60

               
               
               Conread position:56-180
               
               
               Cow position:chr17:20930547-20930425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:56-243
               
               
               Cow position:chr17:26183591-26183402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:56-293
               
               
               Cow position:chr17:33653449-33653682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):138, 63

               
               
               Conread position:56-316
               
               
               Cow position:chr17:9932067-9932317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):206, 72

               
               
               Conread position:56-318
               
               
               Cow position:chr17:31559815-31559555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):93, 238

               
               
               Conread position:56-348
               
               
               Cow position:chr17:26757200-26757509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 208

               
               
               Conread position:56-349
               
               
               Cow position:chr17:32471546-32471832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 14

               
               
               Conread position:56-382
               
               
               Cow position:chr17:17193734-17193413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):66, 165

               
               
               Conread position:56-383
               
               
               Cow position:chr17:20780769-20780429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 244

               
               
               Conread position:56-384
               
               
               Cow position:chr17:24587867-24587539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 96

               
               
               Conread position:56-384
               
               
               Cow position:chr17:24883326-24883649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 232

               
               
               Conread position:57-214
               
               
               Cow position:chr17:17822331-17822177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 89

               
               
               Conread position:57-235
               
               
               Cow position:chr17:35457575-35457750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):162, 83

               
               
               Conread position:57-252
               
               
               Cow position:chr17:35043692-35043875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:57-256
               
               
               Cow position:chr17:15728712-15728518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:57-260
               
               
               Cow position:chr17:24895320-24895114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):87, 34

               
               
               Conread position:57-271
               
               
               Cow position:chr17:30501570-30501786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):140, 32

               
               
               Conread position:57-273
               
               
               Cow position:chr17:28465670-28465451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 119

               
               
               Conread position:57-282
               
               
               Cow position:chr17:22223957-22223717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):145, 88

               
               
               Conread position:57-332
               
               
               Cow position:chr17:32332849-32333123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 37

               
               
               Conread position:57-339
               
               
               Cow position:chr17:17044091-17044371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 73

               
               
               Conread position:57-378
               
               
               Cow position:chr17:12929285-12929614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):79, 43

               
               
               Conread position:57-378
               
               
               Cow position:chr17:29026318-29025991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:57-378
               
               
               Cow position:chr17:31856915-31856594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 87

               
               
               Conread position:57-382
               
               
               Cow position:chr17:36275580-36275259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:57-384
               
               
               Cow position:chr17:3354112-3353798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 66

               
               
               Conread position:57-384
               
               
               Cow position:chr17:26818229-26818532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):244, 95

               
               
               Conread position:57-384
               
               
               Cow position:chr17:32278661-32278988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):115, 133

               
               
               Conread position:57-384
               
               
               Cow position:chr17:32280911-32280584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):115, 133

               
               
               Conread position:57-384
               
               
               Cow position:chr17:32418874-32419197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 95

               
               
               Conread position:57-451
               
               
               Cow position:chr17:25513875-25514274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 247

               
               
               Conread position:58-216
               
               
               Cow position:chr17:34806420-34806582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:58-255
               
               
               Cow position:chr17:11985644-11985832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):120, 52

               
               
               Conread position:58-282
               
               
               Cow position:chr17:42150630-42150409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 87

               
               
               Conread position:58-308
               
               
               Cow position:chr17:19899142-19898887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):75, 204

               
               
               Conread position:58-316
               
               
               Cow position:chr17:3389076-3388809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:202
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):69, 173

               
               
               Conread position:58-365
               
               
               Cow position:chr17:9056457-9056764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):206, 118

               
               
               Conread position:58-367
               
               
               Cow position:chr17:24751154-24750851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):86, 34

               
               
               Conread position:58-378
               
               
               Cow position:chr17:20848770-20848446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 101

               
               
               Conread position:58-382
               
               
               Cow position:chr17:33933506-33933829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 88

               
               
               Conread position:58-384
               
               
               Cow position:chr17:5898282-5898607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):62, 129

               
               
               Conread position:58-384
               
               
               Cow position:chr17:18146432-18146100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):82, 207

               
               
               Conread position:58-384
               
               
               Cow position:chr17:20022272-20022599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 83

               
               
               Conread position:58-384
               
               
               Cow position:chr17:21434486-21434808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:58-384
               
               
               Cow position:chr17:25342498-25342823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 227

               
               
               Conread position:59-215
               
               
               Cow position:chr17:14668746-14668588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 123

               
               
               Conread position:59-238
               
               
               Cow position:chr17:15154643-15154827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:59-248
               
               
               Cow position:chr17:22081282-22081463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:59-249
               
               
               Cow position:chr17:28795739-28795931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:59-255
               
               
               Cow position:chr17:39964119-39963923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):87, 115

               
               
               Conread position:59-268
               
               
               Cow position:chr17:10508193-10508402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):69, 26

               
               
               Conread position:59-272
               
               
               Cow position:chr17:946597-946385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):205, 87

               
               
               Conread position:59-274
               
               
               Cow position:chr17:24877347-24877130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 32

               
               
               Conread position:59-309
               
               
               Cow position:chr17:16868034-16868277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):200, 78

               
               
               Conread position:59-325
               
               
               Cow position:chr17:8948726-8948990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):130, 32

               
               
               Conread position:59-331
               
               
               Cow position:chr17:22189672-22189408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):112, 75

               
               
               Conread position:59-332
               
               
               Cow position:chr17:24613466-24613190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):85, 125

               
               
               Conread position:59-373
               
               
               Cow position:chr17:11994779-11995103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):80, 133

               
               
               Conread position:59-383
               
               
               Cow position:chr17:22032447-22032772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):69, 245

               
               
               Conread position:59-384
               
               
               Cow position:chr17:1562550-1562854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):205, 80

               
               
               Conread position:59-384
               
               
               Cow position:chr17:5768140-5767832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):205, 68

               
               
               Conread position:59-384
               
               
               Cow position:chr17:10458693-10459020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):188, 51

               
               
               Conread position:59-384
               
               
               Cow position:chr17:18202002-18201676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):87, 129

               
               
               Conread position:59-384
               
               
               Cow position:chr17:20032667-20032995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):117, 102

               
               
               Conread position:59-384
               
               
               Cow position:chr17:20071862-20072164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):245, 32

               
               
               Conread position:59-384
               
               
               Cow position:chr17:20801055-20800733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):78, 35

               
               
               Conread position:59-384
               
               
               Cow position:chr17:29084408-29084107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):205, 33

               
               
               Conread position:60-217
               
               
               Cow position:chr17:33321727-33321886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 87

               
               
               Conread position:60-231
               
               
               Cow position:chr17:14024388-14024561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:60-244
               
               
               Cow position:chr17:30513771-30513948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:60-247
               
               
               Cow position:chr17:32220642-32220832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 125

               
               
               Conread position:60-249
               
               
               Cow position:chr17:24947575-24947385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):88, 126

               
               
               Conread position:60-254
               
               
               Cow position:chr17:10016517-10016326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:60-287
               
               
               Cow position:chr17:4817770-4817540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):85, 127

               
               
               Conread position:60-295
               
               
               Cow position:chr17:15355174-15354934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):84, 130

               
               
               Conread position:60-303
               
               
               Cow position:chr17:21466018-21466265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):82, 230

               
               
               Conread position:60-344
               
               
               Cow position:chr17:30728747-30728468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):28, 234

               
               
               Conread position:60-382
               
               
               Cow position:chr17:27183702-27184023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:60-384
               
               
               Cow position:chr17:6423994-6423678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 68

               
               
               Conread position:60-384
               
               
               Cow position:chr17:9965782-9966111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):60, 119

               
               
               Conread position:60-384
               
               
               Cow position:chr17:11397907-11397587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):94, 126

               
               
               Conread position:60-384
               
               
               Cow position:chr17:20932569-20932246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):79, 44

               
               
               Conread position:60-384
               
               
               Cow position:chr17:21325584-21325250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 246

               
               
               Conread position:61-244
               
               
               Cow position:chr17:42259440-42259271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):160, 30

               
               
               Conread position:61-251
               
               
               Cow position:chr17:9260372-9260563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):169, 0

               
               
               Conread position:61-332
               
               
               Cow position:chr17:9950417-9950695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):95, 126

               
               
               Conread position:61-342
               
               
               Cow position:chr17:40312938-40312667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):198, 60

               
               
               Conread position:61-343
               
               
               Cow position:chr17:12306161-12306440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):124, 81

               
               
               Conread position:61-366
               
               
               Cow position:chr17:1025595-1025885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 60

               
               
               Conread position:61-384
               
               
               Cow position:chr17:4786242-4786578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 127

               
               
               Conread position:61-384
               
               
               Cow position:chr17:24559532-24559210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):88, 129

               
               
               Conread position:61-384
               
               
               Cow position:chr17:36178811-36179104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):110, 34

               
               
               Conread position:62-214
               
               
               Cow position:chr17:27922483-27922632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 78

               
               
               Conread position:62-296
               
               
               Cow position:chr17:32143327-32143092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):82, 127

               
               
               Conread position:62-352
               
               
               Cow position:chr17:36330729-36331009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):40, 63

               
               
               Conread position:62-378
               
               
               Cow position:chr17:26231203-26230874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):72, 180

               
               
               Conread position:63-379
               
               
               Cow position:chr17:1466179-1466507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):76, 15

               
               
               Conread position:63-384
               
               
               Cow position:chr17:21114718-21115033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 83

               
               
               Conread position:64-248
               
               
               Cow position:chr17:7711672-7711490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):71, 82

               
               
               Conread position:64-343
               
               
               Cow position:chr17:26448779-26448501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):74, 80

               
               
               Conread position:64-379
               
               
               Cow position:chr17:11296875-11296562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):200, 62

               
               
               Conread position:64-379
               
               
               Cow position:chr17:31037141-31037458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 19

               
               
               Conread position:64-384
               
               
               Cow position:chr17:7132188-7132534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:64-384
               
               
               Cow position:chr17:25901444-25901114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:64-384
               
               
               Cow position:chr17:40741890-40741563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):63, 84

               
               
               Conread position:65-251
               
               
               Cow position:chr17:20359351-20359162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):81, 114

               
               
               Conread position:65-272
               
               
               Cow position:chr17:27440412-27440204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):34, 94

               
               
               Conread position:65-382
               
               
               Cow position:chr17:3577762-3577461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):195, 52

               
               
               Conread position:65-384
               
               
               Cow position:chr17:23563577-23563873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):154, 62

               
               
               Conread position:67-384
               
               
               Cow position:chr17:43717107-43717397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):141, 24

               
               
               Conread position:68-247
               
               
               Cow position:chr17:24767056-24767234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:68-383
               
               
               Cow position:chr17:5000369-5000660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):112, 76

               
               
               Conread position:69-332
               
               
               Cow position:chr17:24582433-24582162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):119, 196

               
               
               Conread position:70-348
               
               
               Cow position:chr17:29080767-29080496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:71-223
               
               
               Cow position:chr17:21910302-21910454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-382
               
               
               Cow position:chr17:10431735-10432057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):68, 244

               
               
               Conread position:71-384
               
               
               Cow position:chr17:25594459-25594787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):27, 80

               
               
               Conread position:72-238
               
               
               Cow position:chr17:7037392-7037561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 116

               
               
               Conread position:72-273
               
               
               Cow position:chr17:27665888-27666079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):192, 33

               
               
               Conread position:72-273
               
               
               Cow position:chr17:42361737-42361532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:72-320
               
               
               Cow position:chr17:24163262-24163018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):192, 45

               
               
               Conread position:72-325
               
               
               Cow position:chr17:26574994-26575255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):141, 219

               
               
               Conread position:72-343
               
               
               Cow position:chr17:26789643-26789378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):110, 33

               
               
               Conread position:72-378
               
               
               Cow position:chr17:1063396-1063109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):168, 23

               
               
               Conread position:72-378
               
               
               Cow position:chr17:37699113-37699428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):71, 19

               
               
               Conread position:72-384
               
               
               Cow position:chr17:5514985-5514676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):74, 64

               
               
               Conread position:72-384
               
               
               Cow position:chr17:6566712-6566384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):65, 283

               
               
               Conread position:72-384
               
               
               Cow position:chr17:24773904-24773601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):114, 67

               
               
               Conread position:72-384
               
               
               Cow position:chr17:28284808-28285113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 19

               
               
               Conread position:72-384
               
               
               Cow position:chr17:29472685-29472386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:73-384
               
               
               Cow position:chr17:5422851-5423153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 54

               
               
               Conread position:73-384
               
               
               Cow position:chr17:23100995-23101289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 50

               
               
               Conread position:74-254
               
               
               Cow position:chr17:5027238-5027413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:74-274
               
               
               Cow position:chr17:24862681-24862484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):188, 67

               
               
               Conread position:74-339
               
               
               Cow position:chr17:18818788-18818530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):82, 42

               
               
               Conread position:74-378
               
               
               Cow position:chr17:1114124-1113814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 220

               
               
               Conread position:74-382
               
               
               Cow position:chr17:39771628-39771319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):82, 108

               
               
               Conread position:74-384
               
               
               Cow position:chr17:6329338-6329029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):190, 67

               
               
               Conread position:74-384
               
               
               Cow position:chr17:18419911-18419593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 113

               
               
               Conread position:75-321
               
               
               Cow position:chr17:45296631-45296395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):191, 19

               
               
               Conread position:76-241
               
               
               Cow position:chr17:18775965-18776127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:79-326
               
               
               Cow position:chr17:41429367-41429616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):148, 68

               
               
               Conread position:79-332
               
               
               Cow position:chr17:40852189-40851944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:82-231
               
               
               Cow position:chr17:24757741-24757597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:83-343
               
               
               Cow position:chr17:16078190-16078444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):160, 61

               
               
               Conread position:83-384
               
               
               Cow position:chr17:18473380-18473096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 85

               
               
               Conread position:87-378
               
               
               Cow position:chr17:3371835-3371558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):57, 132

               
               
               Conread position:90-368
               
               
               Cow position:chr17:24490754-24490461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):56, 96

               
               
               Conread position:92-352
               
               
               Cow position:chr17:2810842-2810575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:95-250
               
               
               Cow position:chr17:25348572-25348419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:95-378
               
               
               Cow position:chr17:2275671-2275398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):7, 47

               
               
               Conread position:95-384
               
               
               Cow position:chr17:9697475-9697781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:97-328
               
               
               Cow position:chr17:18766781-18767020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 216

               
               
               Conread position:98-384
               
               
               Cow position:chr17:25097655-25097380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):166, 54

               
               
               Conread position:98-384
               
               
               Cow position:chr17:30665474-30665187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):46, 72

               
               
               Conread position:100-384
               
               
               Cow position:chr17:18108886-18109169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 67

               
               
               Conread position:101-382
               
               
               Cow position:chr17:4225306-4225574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):163, 11

               
               
               Conread position:105-383
               
               
               Cow position:chr17:18495324-18495602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):179, 117

               
               
               Conread position:110-384
               
               
               Cow position:chr17:35338724-35338998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):37, 173

               
               
               Conread position:119-384
               
               
               Cow position:chr17:35126885-35126625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):146, 28

               
               
               Conread position:125-383
               
               
               Cow position:chr17:38263319-38263568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:127-384
               
               
               Cow position:chr17:25796165-25796419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:128-343
               
               
               Cow position:chr17:12880767-12880553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):131, 54

               
               
               Conread position:128-373
               
               
               Cow position:chr17:40288830-40289067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):136, 18

               
               
               Conread position:128-384
               
               
               Cow position:chr17:9117815-9117564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:128-384
               
               
               Cow position:chr17:24822034-24821783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):136, 107

               
               
               Conread position:128-384
               
               
               Cow position:chr17:29157587-29157334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):136, 28

               
               
               Conread position:129-272
               
               
               Cow position:chr17:5743121-5743263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:129-274
               
               
               Cow position:chr17:3097484-3097630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:129-280
               
               
               Cow position:chr17:11306382-11306229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:129-383
               
               
               Cow position:chr17:6848966-6848724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):25, 9

               
               
               Conread position:129-384
               
               
               Cow position:chr17:23516773-23517025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:129-384
               
               
               Cow position:chr17:32273517-32273769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):138, 18

               
               
               Conread position:130-269
               
               
               Cow position:chr17:42697464-42697325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):62, 31

               
               
               Conread position:130-287
               
               
               Cow position:chr17:18109379-18109534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):133, 14

               
               
               Conread position:130-378
               
               
               Cow position:chr17:21755267-21755506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):135, 16

               
               
               Conread position:131-254
               
               
               Cow position:chr17:24789990-24789868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:131-271
               
               
               Cow position:chr17:9713172-9713313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:131-282
               
               
               Cow position:chr17:29075913-29076065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:131-348
               
               
               Cow position:chr17:22016919-22017134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):133, 51

               
               
               Conread position:131-379
               
               
               Cow position:chr17:9911927-9911687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):133, 90

               
               
               Conread position:131-382
               
               
               Cow position:chr17:38833211-38832962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):104, 16

               
               
               Conread position:131-383
               
               
               Cow position:chr17:15340582-15340834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):109, 157

               
               
               Conread position:131-383
               
               
               Cow position:chr17:17060513-17060762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):168, 49

               
               
               Conread position:131-383
               
               
               Cow position:chr17:20874565-20874313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):128, 20

               
               
               Conread position:131-383
               
               
               Cow position:chr17:34751233-34751487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):13, 113

               
               
               Conread position:131-384
               
               
               Cow position:chr17:1060877-1061142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):53, 16

               
               
               Conread position:131-384
               
               
               Cow position:chr17:1410069-1410322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):133, 32

               
               
               Conread position:131-384
               
               
               Cow position:chr17:8544475-8544223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 46

               
               
               Conread position:131-384
               
               
               Cow position:chr17:17406303-17406056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:131-384
               
               
               Cow position:chr17:24554167-24553925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):13, 147

               
               
               Conread position:131-384
               
               
               Cow position:chr17:26765191-26764934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:131-384
               
               
               Cow position:chr17:27202874-27203127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):13, 171

               
               
               Conread position:131-385
               
               
               Cow position:chr17:38990274-38990019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):89, 15

               
               
               Conread position:131-388
               
               
               Cow position:chr17:23883098-23883343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):8, 64

               
               
               Conread position:132-333
               
               
               Cow position:chr17:18847989-18848191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):132, 182

               
               
               Conread position:132-384
               
               
               Cow position:chr17:265837-265593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):132, 12

               
               
               Conread position:132-384
               
               
               Cow position:chr17:8079481-8079234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):132, 144

               
               
               Conread position:132-384
               
               
               Cow position:chr17:18592610-18592361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):131, 24

               
               
               Conread position:133-268
               
               
               Cow position:chr17:42744625-42744488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 50

               
               
               Conread position:134-384
               
               
               Cow position:chr17:5900534-5900284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:134-384
               
               
               Cow position:chr17:27048320-27048076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:135-367
               
               
               Cow position:chr17:2662589-2662358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):129, 16

               
               
               Conread position:135-384
               
               
               Cow position:chr17:9746676-9746432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):132, 17

               
               
               Conread position:138-274
               
               
               Cow position:chr17:20392311-20392177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):102, 81

               
               
               Conread position:138-382
               
               
               Cow position:chr17:39736337-39736100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):124, 104

               
               
               Conread position:138-384
               
               
               Cow position:chr17:20990029-20990277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):81, 8

               
               
               Conread position:139-379
               
               
               Cow position:chr17:40406606-40406366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):154, 130

               
               
               Conread position:140-385
               
               
               Cow position:chr17:24580136-24580380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):124, 12

               
               
               Conread position:145-368
               
               
               Cow position:chr17:25032326-25032550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):119, 143

               
               
               Conread position:146-331
               
               
               Cow position:chr17:28814338-28814529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:146-378
               
               
               Cow position:chr17:21495526-21495300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):62, 87

               
               
               Conread position:146-384
               
               
               Cow position:chr17:8690297-8690525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):118, 65

               
               
               Conread position:146-384
               
               
               Cow position:chr17:21757986-21758221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):118, 139

               
               
               Conread position:146-384
               
               
               Cow position:chr17:25502265-25502027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):119, 83

               
               
               Conread position:146-384
               
               
               Cow position:chr17:39857540-39857310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):118, 32

               
               
               Conread position:147-316
               
               
               Cow position:chr17:30213039-30212870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):117, 72

               
               
               Conread position:147-319
               
               
               Cow position:chr17:11478923-11478747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:147-380
               
               
               Cow position:chr17:10561789-10561551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):9, 157

               
               
               Conread position:147-384
               
               
               Cow position:chr17:12591328-12591084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 160

               
               
               Conread position:147-384
               
               
               Cow position:chr17:30718264-30718502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):117, 143

               
               
               Conread position:148-384
               
               
               Cow position:chr17:21335539-21335777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:149-384
               
               
               Cow position:chr17:33657917-33658153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):115, 29

               
               
               Conread position:151-383
               
               
               Cow position:chr17:979017-979238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):229, 86

               
               
               Conread position:152-382
               
               
               Cow position:chr17:40421820-40421590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):110, 166

               
               
               Conread position:152-384
               
               
               Cow position:chr17:1040893-1040663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):112, 18

               
               
               Conread position:152-384
               
               
               Cow position:chr17:5006339-5006570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):28, 83

               
               
               Conread position:153-384
               
               
               Cow position:chr17:30539122-30539335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):114, 34

               
               
               Conread position:155-345
               
               
               Cow position:chr17:20810344-20810533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:155-355
               
               
               Cow position:chr17:16158637-16158437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):109, 131

               
               
               Conread position:155-384
               
               
               Cow position:chr17:41891916-41892147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):107, 12

               
               
               Conread position:156-383
               
               
               Cow position:chr17:11172471-11172698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):106, 27

               
               
               Conread position:161-321
               
               
               Cow position:chr17:22048648-22048811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:161-386
               
               
               Cow position:chr17:11368710-11368935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):110, 40

               
               
               Conread position:162-384
               
               
               Cow position:chr17:3503720-3503499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):102, 76

               
               
               Conread position:173-384
               
               
               Cow position:chr17:14761994-14762202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):100, 112

               
               
               Conread position:174-384
               
               
               Cow position:chr17:4968239-4968031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):90, 111

               
               
               Conread position:179-280
               
               
               Cow position:chr17:32192731-32192833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:180-376
               
               
               Cow position:chr17:924000-923804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 134

               
               
               Conread position:181-384
               
               
               Cow position:chr17:23798402-23798196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):5, 115

               
               
               Conread position:182-383
               
               
               Cow position:chr17:31231004-31231193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):82, 34

               
               
               Conread position:182-384
               
               
               Cow position:chr17:38647180-38646977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):82, 155

               
               
               Conread position:185-381
               
               
               Cow position:chr17:34596056-34595864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):74, 101

               
               
               Conread position:185-384
               
               
               Cow position:chr17:28540144-28539946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):79, 34

               
               
               Conread position:187-319
               
               
               Cow position:chr17:21793739-21793871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):95, 61

               
               
               Conread position:187-374
               
               
               Cow position:chr17:21478808-21478995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):77, 35

               
               
               Conread position:190-381
               
               
               Cow position:chr17:1275634-1275445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 30

               
               
               Conread position:190-384
               
               
               Cow position:chr17:25541706-25541896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 154

               
               
               Conread position:193-382
               
               
               Cow position:chr17:18860613-18860804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):71, 92

               
               
               Conread position:193-384
               
               
               Cow position:chr17:7654344-7654538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):73, 186

               
               
               Conread position:194-378
               
               
               Cow position:chr17:21917766-21917950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):60, 66

               
               
               Conread position:195-384
               
               
               Cow position:chr17:7137085-7136899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 66

               
               
               Conread position:205-379
               
               
               Cow position:chr17:20870002-20870178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):35, 51

               
               
               Conread position:215-384
               
               
               Cow position:chr17:12059007-12059177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:215-384
               
               
               Cow position:chr17:15333624-15333795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:224-443
               
               
               Cow position:chr17:17266814-17267036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):40, 164

               
               
               Conread position:237-384
               
               
               Cow position:chr17:34207751-34207901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1-177
               
               
               Cow position:chr18:21410911-21410735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 50

               
               
               Conread position:1-252
               
               
               Cow position:chr18:24946299-24946063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:1-340
               
               
               Cow position:chr18:23169807-23169463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):18, 71

               
               
               Conread position:1-352
               
               
               Cow position:chr18:40759448-40759082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):51, 299

               
               
               Conread position:1-387
               
               
               Cow position:chr18:42290114-42290484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):163, 28

               
               
               Conread position:1-387
               
               
               Cow position:chr18:42292842-42293212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:264
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):17, 50

               
               
               Conread position:2-232
               
               
               Cow position:chr18:9596398-9596178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:2-268
               
               
               Cow position:chr18:23649148-23648880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):137, 51

               
               
               Conread position:2-368
               
               
               Cow position:chr18:11907410-11907055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):127, 23

               
               
               Conread position:3-354
               
               
               Cow position:chr18:41024888-41025274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:269
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):24, 319

               
               
               Conread position:4-244
               
               
               Cow position:chr18:40063318-40063078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):54, 22

               
               
               Conread position:6-379
               
               
               Cow position:chr18:51405701-51406060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:260
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):58, 17

               
               
               Conread position:7-255
               
               
               Cow position:chr18:52383122-52382876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):140, 22

               
               
               Conread position:8-308
               
               
               Cow position:chr18:5600856-5600553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:9-241
               
               
               Cow position:chr18:27637711-27637478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 87

               
               
               Conread position:9-346
               
               
               Cow position:chr18:1024214-1023866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:10-298
               
               
               Cow position:chr18:44909266-44908982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:11-213
               
               
               Cow position:chr18:47680725-47680528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:11-213
               
               
               Cow position:chr18:47865282-47865085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:12-383
               
               
               Cow position:chr18:19688241-19687864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 52

               
               
               Conread position:18-252
               
               
               Cow position:chr18:2108450-2108222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):100, 33

               
               
               Conread position:20-305
               
               
               Cow position:chr18:31082136-31082427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:20-328
               
               
               Cow position:chr18:35534943-35535251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 47

               
               
               Conread position:22-300
               
               
               Cow position:chr18:51383192-51383468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):21, 132

               
               
               Conread position:24-366
               
               
               Cow position:chr18:23623430-23623771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):120, 26

               
               
               Conread position:25-317
               
               
               Cow position:chr18:19868063-19868353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):101, 5

               
               
               Conread position:26-306
               
               
               Cow position:chr18:23630410-23630685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 106

               
               
               Conread position:26-367
               
               
               Cow position:chr18:36768611-36768944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):30, 105

               
               
               Conread position:26-384
               
               
               Cow position:chr18:4331153-4330798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):24, 50

               
               
               Conread position:27-325
               
               
               Cow position:chr18:35453127-35452827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 37

               
               
               Conread position:27-331
               
               
               Cow position:chr18:55693013-55692709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):102, 22

               
               
               Conread position:27-368
               
               
               Cow position:chr18:48242375-48242049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):10, 48

               
               
               Conread position:27-384
               
               
               Cow position:chr18:55553173-55552813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):15, 242

               
               
               Conread position:28-268
               
               
               Cow position:chr18:31556957-31557201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):34, 25

               
               
               Conread position:29-196
               
               
               Cow position:chr18:30247809-30247973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:29-229
               
               
               Cow position:chr18:55722698-55722499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):23, 38

               
               
               Conread position:29-235
               
               
               Cow position:chr18:17195149-17195353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:29-241
               
               
               Cow position:chr18:8219977-8220190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:29-249
               
               
               Cow position:chr18:50567100-50566879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:29-384
               
               
               Cow position:chr18:23615674-23616037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):29, 142

               
               
               Conread position:30-238
               
               
               Cow position:chr18:56463525-56463741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 160

               
               
               Conread position:30-384
               
               
               Cow position:chr18:4495695-4496044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):162, 35

               
               
               Conread position:30-384
               
               
               Cow position:chr18:29372059-29371712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):119, 19

               
               
               Conread position:30-384
               
               
               Cow position:chr18:30225335-30225701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):111, 23

               
               
               Conread position:31-273
               
               
               Cow position:chr18:44137684-44137449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):115, 17

               
               
               Conread position:31-274
               
               
               Cow position:chr18:2793780-2794019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):28, 97

               
               
               Conread position:31-277
               
               
               Cow position:chr18:45899088-45898842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):116, 22

               
               
               Conread position:31-319
               
               
               Cow position:chr18:32251967-32252261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):26, 72

               
               
               Conread position:31-324
               
               
               Cow position:chr18:22568868-22569164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):27, 81

               
               
               Conread position:31-331
               
               
               Cow position:chr18:12775588-12775889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:31-379
               
               
               Cow position:chr18:1571043-1571388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 19

               
               
               Conread position:31-381
               
               
               Cow position:chr18:56181263-56181614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):46, 115

               
               
               Conread position:31-384
               
               
               Cow position:chr18:52637334-52637680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):131, 22

               
               
               Conread position:32-231
               
               
               Cow position:chr18:22045217-22045417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):110, 178

               
               
               Conread position:32-282
               
               
               Cow position:chr18:47824583-47824824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:33-248
               
               
               Cow position:chr18:44514280-44514068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):113, 17

               
               
               Conread position:33-295
               
               
               Cow position:chr18:53053036-53053300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):115, 156

               
               
               Conread position:34-384
               
               
               Cow position:chr18:50974097-50974452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):105, 31

               
               
               Conread position:34-386
               
               
               Cow position:chr18:14586293-14586624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:252
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):137, 16

               
               
               Conread position:35-331
               
               
               Cow position:chr18:22180590-22180888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):199, 92

               
               
               Conread position:37-241
               
               
               Cow position:chr18:36734370-36734577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:37-241
               
               
               Cow position:chr18:55733487-55733279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 155

               
               
               Conread position:37-249
               
               
               Cow position:chr18:16659235-16659454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:37-251
               
               
               Cow position:chr18:50004518-50004726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:37-302
               
               
               Cow position:chr18:32600242-32599974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):112, 16

               
               
               Conread position:37-345
               
               
               Cow position:chr18:12584657-12584961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):155, 16

               
               
               Conread position:37-368
               
               
               Cow position:chr18:30340988-30341314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):16, 206

               
               
               Conread position:37-384
               
               
               Cow position:chr18:4748700-4749034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:38-368
               
               
               Cow position:chr18:42751400-42751752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):91, 172

               
               
               Conread position:38-378
               
               
               Cow position:chr18:17649552-17649888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):155, 27

               
               
               Conread position:38-378
               
               
               Cow position:chr18:20865173-20864840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):152, 15

               
               
               Conread position:38-384
               
               
               Cow position:chr18:10954647-10954322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):116, 15

               
               
               Conread position:38-384
               
               
               Cow position:chr18:20462520-20462850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):226, 26

               
               
               Conread position:38-384
               
               
               Cow position:chr18:38985880-38985535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 90

               
               
               Conread position:39-273
               
               
               Cow position:chr18:25107134-25106898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):154, 26

               
               
               Conread position:39-303
               
               
               Cow position:chr18:10051936-10051671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):20, 56

               
               
               Conread position:39-348
               
               
               Cow position:chr18:52402781-52403092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):105, 27

               
               
               Conread position:39-384
               
               
               Cow position:chr18:12113179-12113533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 86

               
               
               Conread position:39-442
               
               
               Cow position:chr18:51643832-51644237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):113, 15

               
               
               Conread position:40-271
               
               
               Cow position:chr18:14225576-14225349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):21, 54

               
               
               Conread position:40-345
               
               
               Cow position:chr18:49267796-49268107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 24

               
               
               Conread position:40-378
               
               
               Cow position:chr18:18918776-18919106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 85

               
               
               Conread position:40-378
               
               
               Cow position:chr18:24266218-24266560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):98, 24

               
               
               Conread position:40-383
               
               
               Cow position:chr18:10322979-10322649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):224, 13

               
               
               Conread position:41-261
               
               
               Cow position:chr18:35786238-35786022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:41-365
               
               
               Cow position:chr18:49017672-49017365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:41-384
               
               
               Cow position:chr18:19641159-19640823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:244
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):108, 50

               
               
               Conread position:41-394
               
               
               Cow position:chr18:30359959-30360309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:249
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):93, 16

               
               
               Conread position:43-332
               
               
               Cow position:chr18:47392591-47392296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):111, 21

               
               
               Conread position:43-378
               
               
               Cow position:chr18:346313-346649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):107, 10

               
               
               Conread position:43-378
               
               
               Cow position:chr18:52703678-52704000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):216, 21

               
               
               Conread position:45-383
               
               
               Cow position:chr18:54572107-54572448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):102, 132

               
               
               Conread position:46-366
               
               
               Cow position:chr18:22055680-22056018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 250

               
               
               Conread position:46-383
               
               
               Cow position:chr18:39662960-39662623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):100, 11

               
               
               Conread position:46-384
               
               
               Cow position:chr18:3212060-3211715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:46-384
               
               
               Cow position:chr18:21195166-21195494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 38

               
               
               Conread position:46-384
               
               
               Cow position:chr18:37023357-37023709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:46-387
               
               
               Cow position:chr18:1399173-1399511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:236
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):116, 11

               
               
               Conread position:47-274
               
               
               Cow position:chr18:14172034-14172255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):124, 95

               
               
               Conread position:47-321
               
               
               Cow position:chr18:47417179-47416900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):207, 124

               
               
               Conread position:47-348
               
               
               Cow position:chr18:15516994-15517297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:219
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):26, 99

               
               
               Conread position:47-373
               
               
               Cow position:chr18:45104247-45104590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:47-382
               
               
               Cow position:chr18:32883472-32883152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):19, 49

               
               
               Conread position:47-383
               
               
               Cow position:chr18:43822775-43823104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):106, 17

               
               
               Conread position:47-384
               
               
               Cow position:chr18:11867520-11867184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):11, 101

               
               
               Conread position:47-384
               
               
               Cow position:chr18:19143326-19143672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):100, 18

               
               
               Conread position:47-384
               
               
               Cow position:chr18:33896236-33896584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 10

               
               
               Conread position:47-384
               
               
               Cow position:chr18:47512175-47511842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:48-243
               
               
               Cow position:chr18:21401121-21401317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:48-272
               
               
               Cow position:chr18:45558323-45558101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):13, 80

               
               
               Conread position:48-282
               
               
               Cow position:chr18:38601705-38601941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:48-361
               
               
               Cow position:chr18:55549909-55549595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):99, 16

               
               
               Conread position:48-378
               
               
               Cow position:chr18:5632444-5632115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:48-383
               
               
               Cow position:chr18:46276123-46276464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):71, 5

               
               
               Conread position:48-384
               
               
               Cow position:chr18:3180589-3180264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):12, 5

               
               
               Conread position:48-384
               
               
               Cow position:chr18:19193193-19193522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 75

               
               
               Conread position:49-251
               
               
               Cow position:chr18:4485773-4485583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:49-255
               
               
               Cow position:chr18:1858956-1859165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):103, 138

               
               
               Conread position:49-256
               
               
               Cow position:chr18:34444559-34444762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):17, 97

               
               
               Conread position:49-264
               
               
               Cow position:chr18:4152376-4152591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):127, 75

               
               
               Conread position:49-282
               
               
               Cow position:chr18:21081700-21081947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 46

               
               
               Conread position:49-299
               
               
               Cow position:chr18:6470269-6470024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):213, 92

               
               
               Conread position:49-330
               
               
               Cow position:chr18:53039025-53038724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):90, 8

               
               
               Conread position:49-348
               
               
               Cow position:chr18:50959666-50959365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):143, 128

               
               
               Conread position:49-383
               
               
               Cow position:chr18:20126471-20126150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 99

               
               
               Conread position:49-384
               
               
               Cow position:chr18:7414855-7415185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 103

               
               
               Conread position:49-384
               
               
               Cow position:chr18:7951297-7950961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):39, 57

               
               
               Conread position:49-384
               
               
               Cow position:chr18:7952387-7952045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):80, 199

               
               
               Conread position:50-217
               
               
               Cow position:chr18:34876947-34876780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):94, 7

               
               
               Conread position:50-220
               
               
               Cow position:chr18:50276066-50276236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):77, 102

               
               
               Conread position:50-225
               
               
               Cow position:chr18:36500905-36501076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 84

               
               
               Conread position:50-249
               
               
               Cow position:chr18:23380303-23380109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:50-249
               
               
               Cow position:chr18:45897903-45897710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:50-250
               
               
               Cow position:chr18:45573556-45573357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:50-255
               
               
               Cow position:chr18:49602866-49603071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:50-262
               
               
               Cow position:chr18:41724636-41724853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:50-282
               
               
               Cow position:chr18:2773210-2773448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:50-282
               
               
               Cow position:chr18:2776713-2776951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:50-282
               
               
               Cow position:chr18:35827202-35827429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):116, 41

               
               
               Conread position:50-285
               
               
               Cow position:chr18:46879984-46880228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):94, 139

               
               
               Conread position:50-289
               
               
               Cow position:chr18:18844188-18843950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):11, 74

               
               
               Conread position:50-298
               
               
               Cow position:chr18:52251678-52251926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):96, 237

               
               
               Conread position:50-331
               
               
               Cow position:chr18:25598054-25598345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:50-332
               
               
               Cow position:chr18:22789914-22790191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 95

               
               
               Conread position:50-339
               
               
               Cow position:chr18:43796782-43797065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 74

               
               
               Conread position:50-343
               
               
               Cow position:chr18:50359501-50359217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):214, 78

               
               
               Conread position:50-351
               
               
               Cow position:chr18:23163070-23162769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):90, 66

               
               
               Conread position:50-351
               
               
               Cow position:chr18:35751202-35751500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):119, 36

               
               
               Conread position:50-368
               
               
               Cow position:chr18:4264220-4264531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):128, 75

               
               
               Conread position:50-368
               
               
               Cow position:chr18:10214015-10214336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):115, 95

               
               
               Conread position:50-378
               
               
               Cow position:chr18:51675909-51676239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):60, 36

               
               
               Conread position:50-378
               
               
               Cow position:chr18:51757270-51756945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):214, 128

               
               
               Conread position:50-379
               
               
               Cow position:chr18:4668330-4668643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:50-380
               
               
               Cow position:chr18:42431437-42431759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):16, 63

               
               
               Conread position:50-383
               
               
               Cow position:chr18:4884341-4884666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 123

               
               
               Conread position:50-383
               
               
               Cow position:chr18:9010882-9010567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 76

               
               
               Conread position:50-383
               
               
               Cow position:chr18:43555338-43555680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):75, 7

               
               
               Conread position:50-384
               
               
               Cow position:chr18:9558142-9557827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:50-384
               
               
               Cow position:chr18:10905023-10904693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 105

               
               
               Conread position:50-384
               
               
               Cow position:chr18:15613686-15614016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:50-384
               
               
               Cow position:chr18:19849595-19849912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):255, 78

               
               
               Conread position:50-384
               
               
               Cow position:chr18:22120709-22121037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):102, 44

               
               
               Conread position:50-384
               
               
               Cow position:chr18:23714711-23715044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 84

               
               
               Conread position:50-384
               
               
               Cow position:chr18:44262800-44262469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:50-384
               
               
               Cow position:chr18:45453884-45453550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):207, 104

               
               
               Conread position:50-384
               
               
               Cow position:chr18:50382426-50382102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):82, 120

               
               
               Conread position:50-387
               
               
               Cow position:chr18:12117677-12117999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:241
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):156, 95

               
               
               Conread position:51-171
               
               
               Cow position:chr18:35112132-35112249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:51-225
               
               
               Cow position:chr18:47096597-47096431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:51-252
               
               
               Cow position:chr18:8208248-8208450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):105, 119

               
               
               Conread position:51-380
               
               
               Cow position:chr18:29474914-29474588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):15, 71

               
               
               Conread position:51-382
               
               
               Cow position:chr18:12242452-12242123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 58

               
               
               Conread position:51-442
               
               
               Cow position:chr18:51643195-51643580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):213, 19

               
               
               Conread position:52-210
               
               
               Cow position:chr18:43057067-43056908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):88, 111

               
               
               Conread position:52-278
               
               
               Cow position:chr18:44917928-44917705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):212, 59

               
               
               Conread position:52-301
               
               
               Cow position:chr18:37189117-37189369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:52-322
               
               
               Cow position:chr18:36450076-36449801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):18, 109

               
               
               Conread position:52-348
               
               
               Cow position:chr18:41257743-41258024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):94, 154

               
               
               Conread position:52-378
               
               
               Cow position:chr18:51594644-51594952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):212, 23

               
               
               Conread position:52-384
               
               
               Cow position:chr18:20641328-20641647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 12

               
               
               Conread position:52-384
               
               
               Cow position:chr18:43951003-43950667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:53-225
               
               
               Cow position:chr18:52406234-52406066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:53-228
               
               
               Cow position:chr18:44205921-44206085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:53-231
               
               
               Cow position:chr18:21528823-21528643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):93, 124

               
               
               Conread position:53-238
               
               
               Cow position:chr18:82144-81961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):9, 44

               
               
               Conread position:53-238
               
               
               Cow position:chr18:4772816-4772999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:53-261
               
               
               Cow position:chr18:11434925-11434719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:53-272
               
               
               Cow position:chr18:24719482-24719267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):22, 74

               
               
               Conread position:53-273
               
               
               Cow position:chr18:40047331-40047544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:53-274
               
               
               Cow position:chr18:50632270-50632490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 76

               
               
               Conread position:53-302
               
               
               Cow position:chr18:9040530-9040780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):16, 96

               
               
               Conread position:53-303
               
               
               Cow position:chr18:52414140-52413888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):89, 32

               
               
               Conread position:53-329
               
               
               Cow position:chr18:11791091-11790820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):210, 33

               
               
               Conread position:53-378
               
               
               Cow position:chr18:4629217-4628885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 11

               
               
               Conread position:53-378
               
               
               Cow position:chr18:7109304-7108978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):109, 125

               
               
               Conread position:53-378
               
               
               Cow position:chr18:7963590-7963294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):216, 45

               
               
               Conread position:53-382
               
               
               Cow position:chr18:10977042-10977361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 38

               
               
               Conread position:53-383
               
               
               Cow position:chr18:7650149-7649842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:53-383
               
               
               Cow position:chr18:55505576-55505251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 49

               
               
               Conread position:53-384
               
               
               Cow position:chr18:11779825-11779503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 12

               
               
               Conread position:53-384
               
               
               Cow position:chr18:29958008-29958313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):211, 21

               
               
               Conread position:53-385
               
               
               Cow position:chr18:7956322-7955986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):91, 41

               
               
               Conread position:53-393
               
               
               Cow position:chr18:39623977-39623639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):96, 235

               
               
               Conread position:54-321
               
               
               Cow position:chr18:17974796-17974549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):234, 73

               
               
               Conread position:54-332
               
               
               Cow position:chr18:15173176-15172916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):132, 38

               
               
               Conread position:54-383
               
               
               Cow position:chr18:7965406-7965081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 130

               
               
               Conread position:54-384
               
               
               Cow position:chr18:1954408-1954746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 242

               
               
               Conread position:54-384
               
               
               Cow position:chr18:9974158-9974480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 98

               
               
               Conread position:54-384
               
               
               Cow position:chr18:46452711-46453031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):172, 83

               
               
               Conread position:54-385
               
               
               Cow position:chr18:8170919-8171243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 86

               
               
               Conread position:55-225
               
               
               Cow position:chr18:56011207-56011379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):89, 71

               
               
               Conread position:55-252
               
               
               Cow position:chr18:31159101-31159298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):114, 50

               
               
               Conread position:55-348
               
               
               Cow position:chr18:55120038-55119749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):162, 39

               
               
               Conread position:55-378
               
               
               Cow position:chr18:31672346-31672660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):5, 91

               
               
               Conread position:55-385
               
               
               Cow position:chr18:43283584-43283915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):9, 61

               
               
               Conread position:56-196
               
               
               Cow position:chr18:18520631-18520770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 90

               
               
               Conread position:56-230
               
               
               Cow position:chr18:56183330-56183509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:56-267
               
               
               Cow position:chr18:37187824-37188038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):90, 134

               
               
               Conread position:56-339
               
               
               Cow position:chr18:42212614-42212333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):98, 33

               
               
               Conread position:56-355
               
               
               Cow position:chr18:4489731-4490023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):70, 222

               
               
               Conread position:56-362
               
               
               Cow position:chr18:37303324-37303010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):93, 70

               
               
               Conread position:56-367
               
               
               Cow position:chr18:25006334-25006628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:56-367
               
               
               Cow position:chr18:51691294-51691602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):57, 73

               
               
               Conread position:56-383
               
               
               Cow position:chr18:247527-247837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):208, 72

               
               
               Conread position:56-384
               
               
               Cow position:chr18:6881188-6881504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 33

               
               
               Conread position:56-384
               
               
               Cow position:chr18:28657749-28658065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 29

               
               
               Conread position:56-384
               
               
               Cow position:chr18:42479410-42479744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 103

               
               
               Conread position:56-385
               
               
               Cow position:chr18:55710197-55709873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):20, 123

               
               
               Conread position:57-231
               
               
               Cow position:chr18:49441012-49440837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:57-237
               
               
               Cow position:chr18:21187468-21187296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:57-249
               
               
               Cow position:chr18:39097403-39097598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 130

               
               
               Conread position:57-255
               
               
               Cow position:chr18:19809514-19809710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:57-260
               
               
               Cow position:chr18:48407901-48407706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:57-262
               
               
               Cow position:chr18:32243571-32243763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:57-268
               
               
               Cow position:chr18:11672222-11672002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):58, 161

               
               
               Conread position:57-282
               
               
               Cow position:chr18:38937989-38937766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:57-347
               
               
               Cow position:chr18:3085338-3085634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):89, 229

               
               
               Conread position:57-348
               
               
               Cow position:chr18:31711408-31711686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):156, 65

               
               
               Conread position:57-374
               
               
               Cow position:chr18:54130173-54130480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):132, 48

               
               
               Conread position:57-376
               
               
               Cow position:chr18:30405490-30405811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:57-381
               
               
               Cow position:chr18:50095240-50095547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):183, 88

               
               
               Conread position:57-382
               
               
               Cow position:chr18:3417335-3417019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):74, 161

               
               
               Conread position:57-382
               
               
               Cow position:chr18:9066869-9066544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):176, 95

               
               
               Conread position:57-383
               
               
               Cow position:chr18:10891680-10891360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 45

               
               
               Conread position:57-383
               
               
               Cow position:chr18:39875076-39875414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 147

               
               
               Conread position:57-384
               
               
               Cow position:chr18:6310249-6309927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 88

               
               
               Conread position:57-384
               
               
               Cow position:chr18:9366091-9365760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 228

               
               
               Conread position:57-384
               
               
               Cow position:chr18:11691237-11691564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 155

               
               
               Conread position:57-384
               
               
               Cow position:chr18:12023470-12023791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:57-384
               
               
               Cow position:chr18:28101803-28101475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):23, 83

               
               
               Conread position:57-384
               
               
               Cow position:chr18:46048923-46048603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):54, 216

               
               
               Conread position:57-385
               
               
               Cow position:chr18:29248952-29248627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):87, 23

               
               
               Conread position:58-263
               
               
               Cow position:chr18:47801928-47802126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:58-282
               
               
               Cow position:chr18:4626622-4626841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):206, 94

               
               
               Conread position:58-378
               
               
               Cow position:chr18:9846251-9846547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:58-378
               
               
               Cow position:chr18:20270843-20271170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):68, 131

               
               
               Conread position:58-384
               
               
               Cow position:chr18:5072249-5072569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):208, 70

               
               
               Conread position:59-213
               
               
               Cow position:chr18:37690318-37690164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):114, 129

               
               
               Conread position:59-230
               
               
               Cow position:chr18:21751547-21751375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:59-238
               
               
               Cow position:chr18:52387051-52387231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):68, 127

               
               
               Conread position:59-249
               
               
               Cow position:chr18:37414800-37414994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):91, 33

               
               
               Conread position:59-252
               
               
               Cow position:chr18:6828954-6829157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):127, 86

               
               
               Conread position:59-252
               
               
               Cow position:chr18:49970484-49970678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 34

               
               
               Conread position:59-260
               
               
               Cow position:chr18:41703001-41702804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:59-261
               
               
               Cow position:chr18:29188562-29188353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 137

               
               
               Conread position:59-275
               
               
               Cow position:chr18:56155683-56155472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):87, 124

               
               
               Conread position:59-337
               
               
               Cow position:chr18:53642582-53642862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):14, 95

               
               
               Conread position:59-341
               
               
               Cow position:chr18:41950380-41950103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):85, 27

               
               
               Conread position:59-343
               
               
               Cow position:chr18:2146425-2146701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:219
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):205, 64

               
               
               Conread position:59-355
               
               
               Cow position:chr18:34813819-34813524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):26, 215

               
               
               Conread position:59-384
               
               
               Cow position:chr18:2591993-2592325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):79, 175

               
               
               Conread position:59-384
               
               
               Cow position:chr18:3132606-3132910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):205, 83

               
               
               Conread position:59-384
               
               
               Cow position:chr18:16545295-16545618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 128

               
               
               Conread position:59-384
               
               
               Cow position:chr18:21252155-21251826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):107, 36

               
               
               Conread position:59-384
               
               
               Cow position:chr18:32873763-32873437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):22, 129

               
               
               Conread position:60-213
               
               
               Cow position:chr18:4907310-4907161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):95, 31

               
               
               Conread position:60-229
               
               
               Cow position:chr18:12143785-12143952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:60-252
               
               
               Cow position:chr18:35795054-35795247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):84, 126

               
               
               Conread position:60-264
               
               
               Cow position:chr18:237947-238153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:60-330
               
               
               Cow position:chr18:32189351-32189613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):204, 32

               
               
               Conread position:60-332
               
               
               Cow position:chr18:28930475-28930744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):204, 68

               
               
               Conread position:60-343
               
               
               Cow position:chr18:49038620-49038344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 32

               
               
               Conread position:60-369
               
               
               Cow position:chr18:5189525-5189829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):87, 53

               
               
               Conread position:60-376
               
               
               Cow position:chr18:4555998-4556314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):84, 73

               
               
               Conread position:60-383
               
               
               Cow position:chr18:45903730-45904049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 160

               
               
               Conread position:60-384
               
               
               Cow position:chr18:12270678-12270354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):67, 177

               
               
               Conread position:60-384
               
               
               Cow position:chr18:17390824-17391133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 156

               
               
               Conread position:60-384
               
               
               Cow position:chr18:18592630-18592320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 63

               
               
               Conread position:60-384
               
               
               Cow position:chr18:25601159-25601474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):118, 88

               
               
               Conread position:60-384
               
               
               Cow position:chr18:29648946-29648629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):199, 80

               
               
               Conread position:60-384
               
               
               Cow position:chr18:48713708-48713393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 76

               
               
               Conread position:61-231
               
               
               Cow position:chr18:47419960-47419795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:61-252
               
               
               Cow position:chr18:697054-697242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):85, 116

               
               
               Conread position:61-255
               
               
               Cow position:chr18:18664200-18664401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):85, 134

               
               
               Conread position:61-272
               
               
               Cow position:chr18:42427781-42427574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 49

               
               
               Conread position:61-273
               
               
               Cow position:chr18:15809646-15809847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):203, 66

               
               
               Conread position:61-289
               
               
               Cow position:chr18:5647973-5647749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):203, 61

               
               
               Conread position:61-289
               
               
               Cow position:chr18:52649174-52649410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:61-295
               
               
               Cow position:chr18:47547817-47548056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 30

               
               
               Conread position:61-331
               
               
               Cow position:chr18:34219741-34220025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 240

               
               
               Conread position:61-377
               
               
               Cow position:chr18:23446894-23447230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:61-384
               
               
               Cow position:chr18:10576268-10575952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 91

               
               
               Conread position:62-258
               
               
               Cow position:chr18:28322816-28322626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:62-325
               
               
               Cow position:chr18:8949635-8949891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):199, 24

               
               
               Conread position:62-332
               
               
               Cow position:chr18:49015280-49015023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):202, 53

               
               
               Conread position:62-382
               
               
               Cow position:chr18:47183149-47183437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):202, 24

               
               
               Conread position:62-384
               
               
               Cow position:chr18:37002801-37002477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):72, 53

               
               
               Conread position:63-233
               
               
               Cow position:chr18:21143805-21143970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):157, 61

               
               
               Conread position:63-368
               
               
               Cow position:chr18:49841450-49841138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 133

               
               
               Conread position:63-378
               
               
               Cow position:chr18:20173974-20174279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):201, 47

               
               
               Conread position:63-384
               
               
               Cow position:chr18:18961669-18961993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):92, 115

               
               
               Conread position:64-231
               
               
               Cow position:chr18:35857762-35857928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):95, 79

               
               
               Conread position:64-364
               
               
               Cow position:chr18:33159105-33158818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):185, 0

               
               
               Conread position:64-384
               
               
               Cow position:chr18:3158421-3158759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:64-384
               
               
               Cow position:chr18:42431930-42432250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 81

               
               
               Conread position:64-385
               
               
               Cow position:chr18:48633939-48633634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):49, 31

               
               
               Conread position:68-252
               
               
               Cow position:chr18:7945355-7945173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:68-344
               
               
               Cow position:chr18:29065234-29065500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):232, 58

               
               
               Conread position:68-383
               
               
               Cow position:chr18:5766567-5766257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):8, 61

               
               
               Conread position:68-384
               
               
               Cow position:chr18:3193867-3193548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):94, 87

               
               
               Conread position:68-384
               
               
               Cow position:chr18:30586078-30586376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):196, 59

               
               
               Conread position:68-384
               
               
               Cow position:chr18:37381933-37382250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 70

               
               
               Conread position:69-303
               
               
               Cow position:chr18:14830701-14830919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):195, 31

               
               
               Conread position:69-368
               
               
               Cow position:chr18:55499227-55498930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):195, 83

               
               
               Conread position:69-384
               
               
               Cow position:chr18:1392412-1392721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):85, 107

               
               
               Conread position:72-225
               
               
               Cow position:chr18:44548592-44548744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:72-247
               
               
               Cow position:chr18:41639005-41639179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:72-273
               
               
               Cow position:chr18:51998688-51998892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):82, 104

               
               
               Conread position:72-303
               
               
               Cow position:chr18:22516382-22516610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):218, 72

               
               
               Conread position:72-368
               
               
               Cow position:chr18:17368423-17368710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 113

               
               
               Conread position:72-376
               
               
               Cow position:chr18:26999043-26998733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):81, 72

               
               
               Conread position:72-378
               
               
               Cow position:chr18:42747752-42747446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):65, 169

               
               
               Conread position:72-383
               
               
               Cow position:chr18:12273808-12273502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):110, 33

               
               
               Conread position:73-234
               
               
               Cow position:chr18:306563-306726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:73-332
               
               
               Cow position:chr18:52590246-52590000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:74-376
               
               
               Cow position:chr18:55747840-55747538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):73, 115

               
               
               Conread position:74-377
               
               
               Cow position:chr18:35874230-35873928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:74-384
               
               
               Cow position:chr18:5578447-5578150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):190, 63

               
               
               Conread position:74-384
               
               
               Cow position:chr18:11184091-11183789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:74-384
               
               
               Cow position:chr18:55788841-55789146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):63, 155

               
               
               Conread position:75-251
               
               
               Cow position:chr18:43125228-43125062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:76-384
               
               
               Cow position:chr18:39001664-39001959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:79-340
               
               
               Cow position:chr18:24759512-24759768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):86, 62

               
               
               Conread position:79-384
               
               
               Cow position:chr18:29356486-29356783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 66

               
               
               Conread position:79-384
               
               
               Cow position:chr18:30430912-30430612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 97

               
               
               Conread position:82-352
               
               
               Cow position:chr18:34834640-34834366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 140

               
               
               Conread position:83-378
               
               
               Cow position:chr18:2863854-2864145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):181, 55

               
               
               Conread position:85-384
               
               
               Cow position:chr18:54973871-54974144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):7, 12

               
               
               Conread position:88-260
               
               
               Cow position:chr18:23821691-23821865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:89-344
               
               
               Cow position:chr18:55000600-55000860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):50, 116

               
               
               Conread position:90-264
               
               
               Cow position:chr18:4804131-4804308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):90, 62

               
               
               Conread position:90-287
               
               
               Cow position:chr18:19158013-19157812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):64, 100

               
               
               Conread position:90-339
               
               
               Cow position:chr18:20175058-20175303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 81

               
               
               Conread position:92-376
               
               
               Cow position:chr18:2774002-2774282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):54, 97

               
               
               Conread position:92-384
               
               
               Cow position:chr18:3017950-3018232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):52, 84

               
               
               Conread position:95-332
               
               
               Cow position:chr18:35367071-35367291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):91, 45

               
               
               Conread position:96-387
               
               
               Cow position:chr18:5995601-5995308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 88

               
               
               Conread position:97-384
               
               
               Cow position:chr18:8300154-8299857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 110

               
               
               Conread position:98-379
               
               
               Cow position:chr18:858953-858668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):68, 86

               
               
               Conread position:98-379
               
               
               Cow position:chr18:48452193-48451907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):138, 43

               
               
               Conread position:100-235
               
               
               Cow position:chr18:47966556-47966693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 120

               
               
               Conread position:119-384
               
               
               Cow position:chr18:56159568-56159304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):9, 43

               
               
               Conread position:128-289
               
               
               Cow position:chr18:45637317-45637475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):136, 79

               
               
               Conread position:128-316
               
               
               Cow position:chr18:9176996-9176812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):136, 19

               
               
               Conread position:128-332
               
               
               Cow position:chr18:49324333-49324528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 95

               
               
               Conread position:128-339
               
               
               Cow position:chr18:11312839-11313050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):60, 24

               
               
               Conread position:128-341
               
               
               Cow position:chr18:4534926-4535129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):97, 24

               
               
               Conread position:128-345
               
               
               Cow position:chr18:7077051-7076841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):154, 24

               
               
               Conread position:128-345
               
               
               Cow position:chr18:19883632-19883412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:128-352
               
               
               Cow position:chr18:2849170-2849395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):136, 220

               
               
               Conread position:128-368
               
               
               Cow position:chr18:47835923-47835687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 60

               
               
               Conread position:128-378
               
               
               Cow position:chr18:16997353-16997102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:128-379
               
               
               Cow position:chr18:46135841-46135591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):27, 161

               
               
               Conread position:128-382
               
               
               Cow position:chr18:48828676-48828936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 100

               
               
               Conread position:128-384
               
               
               Cow position:chr18:19896352-19896612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:128-384
               
               
               Cow position:chr18:28923748-28923990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):25, 29

               
               
               Conread position:128-384
               
               
               Cow position:chr18:36201531-36201782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):139, 16

               
               
               Conread position:128-384
               
               
               Cow position:chr18:36230630-36230876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):173, 19

               
               
               Conread position:129-282
               
               
               Cow position:chr18:47705331-47705179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:129-378
               
               
               Cow position:chr18:27109195-27109445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):135, 22

               
               
               Conread position:129-384
               
               
               Cow position:chr18:29058405-29058650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:129-384
               
               
               Cow position:chr18:33008164-33007904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):88, 76

               
               
               Conread position:130-373
               
               
               Cow position:chr18:17005356-17005112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):134, 53

               
               
               Conread position:131-274
               
               
               Cow position:chr18:2765345-2765205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:131-327
               
               
               Cow position:chr18:46727684-46727488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):133, 38

               
               
               Conread position:131-366
               
               
               Cow position:chr18:4203836-4204059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:131-378
               
               
               Cow position:chr18:51392547-51392787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):120, 101

               
               
               Conread position:131-384
               
               
               Cow position:chr18:22214584-22214325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):133, 216

               
               
               Conread position:131-384
               
               
               Cow position:chr18:25647153-25647408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 20

               
               
               Conread position:132-372
               
               
               Cow position:chr18:55015457-55015231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):132, 19

               
               
               Conread position:132-379
               
               
               Cow position:chr18:39434919-39434674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):46, 54

               
               
               Conread position:132-383
               
               
               Cow position:chr18:19273001-19273254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):131, 228

               
               
               Conread position:132-384
               
               
               Cow position:chr18:16686240-16686493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:132-384
               
               
               Cow position:chr18:30794519-30794278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):132, 14

               
               
               Conread position:132-384
               
               
               Cow position:chr18:38607316-38607067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):109, 74

               
               
               Conread position:133-384
               
               
               Cow position:chr18:21740722-21740966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):130, 9

               
               
               Conread position:133-384
               
               
               Cow position:chr18:25282463-25282709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):131, 12

               
               
               Conread position:134-378
               
               
               Cow position:chr18:36459024-36458783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):130, 77

               
               
               Conread position:134-384
               
               
               Cow position:chr18:56190869-56191127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 41

               
               
               Conread position:135-384
               
               
               Cow position:chr18:38687170-38686938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):127, 21

               
               
               Conread position:136-293
               
               
               Cow position:chr18:16379015-16378855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:136-384
               
               
               Cow position:chr18:47828907-47828671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 10

               
               
               Conread position:136-384
               
               
               Cow position:chr18:56166074-56165832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 103

               
               
               Conread position:137-384
               
               
               Cow position:chr18:23766318-23766569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:142-382
               
               
               Cow position:chr18:55788006-55787774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):129, 67

               
               
               Conread position:145-316
               
               
               Cow position:chr18:17660478-17660646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):120, 148

               
               
               Conread position:145-342
               
               
               Cow position:chr18:20798409-20798205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:146-343
               
               
               Cow position:chr18:11377445-11377249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):118, 63

               
               
               Conread position:146-384
               
               
               Cow position:chr18:50082176-50082406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):116, 139

               
               
               Conread position:146-384
               
               
               Cow position:chr18:56184016-56183785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):121, 143

               
               
               Conread position:147-300
               
               
               Cow position:chr18:23505411-23505257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:147-322
               
               
               Cow position:chr18:56301972-56301795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:147-348
               
               
               Cow position:chr18:47966846-47967044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):7, 35

               
               
               Conread position:147-384
               
               
               Cow position:chr18:19620021-19619796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):117, 14

               
               
               Conread position:147-384
               
               
               Cow position:chr18:20127025-20127259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):117, 142

               
               
               Conread position:147-384
               
               
               Cow position:chr18:31586294-31586523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):7, 102

               
               
               Conread position:147-384
               
               
               Cow position:chr18:34527016-34527255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):93, 9

               
               
               Conread position:147-384
               
               
               Cow position:chr18:51850484-51850716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):227, 71

               
               
               Conread position:147-385
               
               
               Cow position:chr18:52855135-52854892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:148-382
               
               
               Cow position:chr18:4539803-4540033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):116, 94

               
               
               Conread position:149-354
               
               
               Cow position:chr18:29760105-29759900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):147, 118

               
               
               Conread position:149-354
               
               
               Cow position:chr18:44483696-44483899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):113, 16

               
               
               Conread position:150-384
               
               
               Cow position:chr18:45571089-45570858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):114, 37

               
               
               Conread position:150-388
               
               
               Cow position:chr18:18369285-18369523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):114, 15

               
               
               Conread position:150-399
               
               
               Cow position:chr18:44801812-44802057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):114, 138

               
               
               Conread position:151-346
               
               
               Cow position:chr18:52406768-52406583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):113, 66

               
               
               Conread position:152-384
               
               
               Cow position:chr18:11578149-11577932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):79, 74

               
               
               Conread position:152-384
               
               
               Cow position:chr18:33299979-33299745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:152-384
               
               
               Cow position:chr18:49100293-49100526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):112, 142

               
               
               Conread position:153-384
               
               
               Cow position:chr18:51190525-51190747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):109, 68

               
               
               Conread position:155-344
               
               
               Cow position:chr18:11685054-11684864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):109, 145

               
               
               Conread position:155-384
               
               
               Cow position:chr18:21102704-21102930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):16, 26

               
               
               Conread position:155-384
               
               
               Cow position:chr18:38344878-38344649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 88

               
               
               Conread position:156-384
               
               
               Cow position:chr18:3370971-3370742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):108, 67

               
               
               Conread position:156-384
               
               
               Cow position:chr18:29796357-29796581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:158-383
               
               
               Cow position:chr18:13507671-13507894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):107, 45

               
               
               Conread position:161-367
               
               
               Cow position:chr18:4182122-4182328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:161-384
               
               
               Cow position:chr18:51212249-51212030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:170-379
               
               
               Cow position:chr18:36183850-36184050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):100, 16

               
               
               Conread position:174-384
               
               
               Cow position:chr18:13360107-13359908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):206, 80

               
               
               Conread position:177-382
               
               
               Cow position:chr18:25206138-25206344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:187-377
               
               
               Cow position:chr18:4601978-4602162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 40

               
               
               Conread position:187-384
               
               
               Cow position:chr18:5487282-5487094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 35

               
               
               Conread position:187-384
               
               
               Cow position:chr18:6609817-6610016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 98

               
               
               Conread position:187-384
               
               
               Cow position:chr18:25984531-25984726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 50

               
               
               Conread position:190-384
               
               
               Cow position:chr18:15880807-15881014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):72, 107

               
               
               Conread position:190-384
               
               
               Cow position:chr18:30248102-30248287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):63, 32

               
               
               Conread position:192-383
               
               
               Cow position:chr18:55461671-55461863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:201-378
               
               
               Cow position:chr18:43065556-43065378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):49, 60

               
               
               Conread position:202-384
               
               
               Cow position:chr18:8104914-8105102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:203-384
               
               
               Cow position:chr18:6103073-6103253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):60, 82

               
               
               Conread position:204-383
               
               
               Cow position:chr18:33407640-33407460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:204-384
               
               
               Cow position:chr18:11832143-11831972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):60, 69

               
               
               Conread position:212-382
               
               
               Cow position:chr18:29991495-29991673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:223-384
               
               
               Cow position:chr18:44548908-44549071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:1-384
               
               
               Cow position:chr19:51307402-51307006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 147

               
               
               Conread position:3-274
               
               
               Cow position:chr19:2068502-2068241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):256, 43

               
               
               Conread position:3-328
               
               
               Cow position:chr19:47184833-47185161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 220

               
               
               Conread position:3-377
               
               
               Cow position:chr19:1650756-1650381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):39, 130

               
               
               Conread position:4-384
               
               
               Cow position:chr19:15719384-15719753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 54

               
               
               Conread position:6-238
               
               
               Cow position:chr19:7864295-7864068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:6-293
               
               
               Cow position:chr19:16032958-16032672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):141, 22

               
               
               Conread position:6-379
               
               
               Cow position:chr19:52750518-52750889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 21

               
               
               Conread position:6-384
               
               
               Cow position:chr19:56094774-56094403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):56, 47

               
               
               Conread position:7-368
               
               
               Cow position:chr19:6278430-6278064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:7-378
               
               
               Cow position:chr19:32177465-32177832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 61

               
               
               Conread position:7-384
               
               
               Cow position:chr19:28014718-28014346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):147, 43

               
               
               Conread position:8-252
               
               
               Cow position:chr19:12760858-12761106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):27, 59

               
               
               Conread position:9-294
               
               
               Cow position:chr19:55756302-55756022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):179, 145

               
               
               Conread position:10-230
               
               
               Cow position:chr19:31768399-31768611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):144, 41

               
               
               Conread position:12-231
               
               
               Cow position:chr19:12093601-12093377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 161

               
               
               Conread position:13-384
               
               
               Cow position:chr19:23786403-23786058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:268
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):24, 80

               
               
               Conread position:15-343
               
               
               Cow position:chr19:22040003-22039676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 36

               
               
               Conread position:19-341
               
               
               Cow position:chr19:4297914-4297591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:21-249
               
               
               Cow position:chr19:10528058-10528289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 36

               
               
               Conread position:23-384
               
               
               Cow position:chr19:5185037-5185380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 19

               
               
               Conread position:23-384
               
               
               Cow position:chr19:38339750-38340115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):113, 86

               
               
               Conread position:24-378
               
               
               Cow position:chr19:6609761-6610123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):17, 41

               
               
               Conread position:25-221
               
               
               Cow position:chr19:19174739-19174546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):42, 68

               
               
               Conread position:25-367
               
               
               Cow position:chr19:31760314-31759986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):129, 23

               
               
               Conread position:25-378
               
               
               Cow position:chr19:11191401-11191745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 24

               
               
               Conread position:26-243
               
               
               Cow position:chr19:14823481-14823262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):31, 69

               
               
               Conread position:26-368
               
               
               Cow position:chr19:1000398-1000732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):270, 24

               
               
               Conread position:26-384
               
               
               Cow position:chr19:17796130-17795762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:258
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):101, 30

               
               
               Conread position:27-384
               
               
               Cow position:chr19:25769893-25769530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):112, 36

               
               
               Conread position:27-384
               
               
               Cow position:chr19:52158761-52158400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 28

               
               
               Conread position:28-331
               
               
               Cow position:chr19:55590455-55590148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):116, 163

               
               
               Conread position:28-348
               
               
               Cow position:chr19:56060976-56061295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):119, 47

               
               
               Conread position:28-378
               
               
               Cow position:chr19:33912407-33912755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 36

               
               
               Conread position:29-235
               
               
               Cow position:chr19:52146663-52146869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):117, 36

               
               
               Conread position:29-282
               
               
               Cow position:chr19:21836018-21836272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):117, 35

               
               
               Conread position:29-301
               
               
               Cow position:chr19:21176529-21176793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):235, 21

               
               
               Conread position:29-378
               
               
               Cow position:chr19:6417829-6417466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):29, 125

               
               
               Conread position:29-378
               
               
               Cow position:chr19:22992173-22992518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):153, 21

               
               
               Conread position:29-378
               
               
               Cow position:chr19:25053442-25053801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):125, 35

               
               
               Conread position:29-384
               
               
               Cow position:chr19:1968110-1968439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 21

               
               
               Conread position:29-384
               
               
               Cow position:chr19:14348243-14347877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):88, 37

               
               
               Conread position:30-240
               
               
               Cow position:chr19:26175988-26176199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):114, 34

               
               
               Conread position:30-257
               
               
               Cow position:chr19:52356466-52356244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:30-352
               
               
               Cow position:chr19:54048213-54048532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):17, 37

               
               
               Conread position:31-214
               
               
               Cow position:chr19:22956863-22956674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 160

               
               
               Conread position:31-223
               
               
               Cow position:chr19:28699734-28699925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):131, 117

               
               
               Conread position:31-272
               
               
               Cow position:chr19:26167700-26167936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):233, 18

               
               
               Conread position:31-272
               
               
               Cow position:chr19:30007400-30007168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):233, 25

               
               
               Conread position:31-282
               
               
               Cow position:chr19:40002138-40002390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):34, 62

               
               
               Conread position:31-282
               
               
               Cow position:chr19:40324038-40323785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):115, 33

               
               
               Conread position:31-317
               
               
               Cow position:chr19:23680159-23680454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:31-331
               
               
               Cow position:chr19:26222833-26222531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):95, 26

               
               
               Conread position:31-339
               
               
               Cow position:chr19:6601501-6601801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):228, 22

               
               
               Conread position:31-368
               
               
               Cow position:chr19:53776353-53776690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):83, 34

               
               
               Conread position:31-376
               
               
               Cow position:chr19:55161005-55160666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:31-377
               
               
               Cow position:chr19:23371371-23371021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:31-384
               
               
               Cow position:chr19:17664867-17664509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 168

               
               
               Conread position:31-384
               
               
               Cow position:chr19:24358043-24358364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):231, 60

               
               
               Conread position:31-384
               
               
               Cow position:chr19:26057336-26057680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):179, 18

               
               
               Conread position:31-384
               
               
               Cow position:chr19:46094411-46094774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 33

               
               
               Conread position:32-220
               
               
               Cow position:chr19:10172545-10172366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:32-345
               
               
               Cow position:chr19:6867144-6867457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):146, 16

               
               
               Conread position:32-383
               
               
               Cow position:chr19:52185537-52185903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:259
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):20, 265

               
               
               Conread position:32-384
               
               
               Cow position:chr19:11724303-11724652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):114, 143

               
               
               Conread position:32-384
               
               
               Cow position:chr19:38842342-38842690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):122, 32

               
               
               Conread position:32-384
               
               
               Cow position:chr19:43058755-43058401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:254
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):17, 154

               
               
               Conread position:33-339
               
               
               Cow position:chr19:33748066-33747756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):121, 31

               
               
               Conread position:33-368
               
               
               Cow position:chr19:44143726-44144054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):22, 56

               
               
               Conread position:33-383
               
               
               Cow position:chr19:28924979-28924625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):26, 98

               
               
               Conread position:34-252
               
               
               Cow position:chr19:14588617-14588401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):110, 19

               
               
               Conread position:34-410
               
               
               Cow position:chr19:25646115-25645733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):52, 75

               
               
               Conread position:35-248
               
               
               Cow position:chr19:5261551-5261334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):109, 18

               
               
               Conread position:35-326
               
               
               Cow position:chr19:28447656-28447363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:211
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:35-334
               
               
               Cow position:chr19:32031027-32031331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):6, 30

               
               
               Conread position:35-368
               
               
               Cow position:chr19:32452854-32453182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):119, 29

               
               
               Conread position:36-234
               
               
               Cow position:chr19:33691349-33691146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):102, 17

               
               
               Conread position:36-307
               
               
               Cow position:chr19:23088189-23087926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 17

               
               
               Conread position:36-384
               
               
               Cow position:chr19:3811813-3812146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):228, 26

               
               
               Conread position:36-384
               
               
               Cow position:chr19:20661201-20661547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:36-384
               
               
               Cow position:chr19:24137478-24137127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 57

               
               
               Conread position:37-236
               
               
               Cow position:chr19:6855130-6854934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):29, 110

               
               
               Conread position:37-240
               
               
               Cow position:chr19:22871046-22871248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):194, 16

               
               
               Conread position:37-257
               
               
               Cow position:chr19:53189643-53189866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:37-277
               
               
               Cow position:chr19:38021654-38021415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):13, 135

               
               
               Conread position:37-345
               
               
               Cow position:chr19:33758035-33758346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:37-352
               
               
               Cow position:chr19:23784219-23784515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):226, 16

               
               
               Conread position:37-368
               
               
               Cow position:chr19:2152372-2152695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):258, 27

               
               
               Conread position:37-384
               
               
               Cow position:chr19:7158504-7158859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:37-384
               
               
               Cow position:chr19:12698529-12698189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):22, 40

               
               
               Conread position:37-384
               
               
               Cow position:chr19:32754738-32754387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:38-255
               
               
               Cow position:chr19:31763705-31763485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):111, 26

               
               
               Conread position:38-277
               
               
               Cow position:chr19:11211065-11211303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):106, 192

               
               
               Conread position:38-373
               
               
               Cow position:chr19:2220862-2221202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:38-384
               
               
               Cow position:chr19:31127142-31127500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):116, 26

               
               
               Conread position:39-241
               
               
               Cow position:chr19:7558754-7558554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:39-263
               
               
               Cow position:chr19:37501836-37502047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:39-333
               
               
               Cow position:chr19:9149150-9148858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:39-339
               
               
               Cow position:chr19:35870996-35870704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:39-364
               
               
               Cow position:chr19:13266999-13267307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):223, 13

               
               
               Conread position:39-373
               
               
               Cow position:chr19:23085065-23084735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):143, 14

               
               
               Conread position:39-384
               
               
               Cow position:chr19:12747568-12747911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):105, 53

               
               
               Conread position:40-252
               
               
               Cow position:chr19:5521951-5522158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-255
               
               
               Cow position:chr19:14581571-14581357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 92

               
               
               Conread position:40-326
               
               
               Cow position:chr19:5406709-5406422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):78, 113

               
               
               Conread position:40-343
               
               
               Cow position:chr19:49221415-49221710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 17

               
               
               Conread position:40-384
               
               
               Cow position:chr19:6532081-6531756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 17

               
               
               Conread position:40-384
               
               
               Cow position:chr19:15091938-15092262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):224, 24

               
               
               Conread position:40-384
               
               
               Cow position:chr19:50562890-50562540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:41-248
               
               
               Cow position:chr19:2137622-2137824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:41-367
               
               
               Cow position:chr19:43190137-43189810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):11, 66

               
               
               Conread position:41-368
               
               
               Cow position:chr19:50026092-50025769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):87, 32

               
               
               Conread position:41-384
               
               
               Cow position:chr19:16096346-16096685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 114

               
               
               Conread position:43-329
               
               
               Cow position:chr19:13933649-13933358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):106, 10

               
               
               Conread position:43-352
               
               
               Cow position:chr19:3870802-3870502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):221, 31

               
               
               Conread position:43-378
               
               
               Cow position:chr19:12709594-12709939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 21

               
               
               Conread position:44-345
               
               
               Cow position:chr19:55583740-55583432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):97, 256

               
               
               Conread position:44-381
               
               
               Cow position:chr19:48723238-48722897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:249
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):17, 52

               
               
               Conread position:45-246
               
               
               Cow position:chr19:23559589-23559385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 90

               
               
               Conread position:46-383
               
               
               Cow position:chr19:47671936-47671616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 82

               
               
               Conread position:46-384
               
               
               Cow position:chr19:40051195-40051525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):71, 7

               
               
               Conread position:46-388
               
               
               Cow position:chr19:56004049-56003720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 93

               
               
               Conread position:46-411
               
               
               Cow position:chr19:22779415-22779041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):98, 116

               
               
               Conread position:47-267
               
               
               Cow position:chr19:25831999-25832218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):49, 93

               
               
               Conread position:47-267
               
               
               Cow position:chr19:39981941-39981717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 150

               
               
               Conread position:47-366
               
               
               Cow position:chr19:729549-729861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):107, 6

               
               
               Conread position:47-376
               
               
               Cow position:chr19:44044-43721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):89, 6

               
               
               Conread position:47-377
               
               
               Cow position:chr19:39246109-39245773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:47-378
               
               
               Cow position:chr19:53899939-53900273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):81, 6

               
               
               Conread position:47-384
               
               
               Cow position:chr19:5912755-5913093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):17, 125

               
               
               Conread position:47-384
               
               
               Cow position:chr19:10081290-10080934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:250
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):13, 307

               
               
               Conread position:47-384
               
               
               Cow position:chr19:24062475-24062157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):217, 92

               
               
               Conread position:48-231
               
               
               Cow position:chr19:22167008-22167197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 9

               
               
               Conread position:48-234
               
               
               Cow position:chr19:10385366-10385552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):88, 99

               
               
               Conread position:48-297
               
               
               Cow position:chr19:39795387-39795143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):118, 5

               
               
               Conread position:48-321
               
               
               Cow position:chr19:39758720-39758449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):82, 5

               
               
               Conread position:48-344
               
               
               Cow position:chr19:38411068-38410774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:48-352
               
               
               Cow position:chr19:52335203-52334897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:48-383
               
               
               Cow position:chr19:13121088-13121408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):138, 5

               
               
               Conread position:48-384
               
               
               Cow position:chr19:18317191-18316853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):108, 16

               
               
               Conread position:48-384
               
               
               Cow position:chr19:23005160-23005498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):203, 16

               
               
               Conread position:48-384
               
               
               Cow position:chr19:41497799-41498140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):104, 16

               
               
               Conread position:49-220
               
               
               Cow position:chr19:12264154-12263992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:49-248
               
               
               Cow position:chr19:4602496-4602693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:49-249
               
               
               Cow position:chr19:4586350-4586547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):115, 93

               
               
               Conread position:49-348
               
               
               Cow position:chr19:23832398-23832692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):17, 46

               
               
               Conread position:49-383
               
               
               Cow position:chr19:7637033-7637372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 105

               
               
               Conread position:49-384
               
               
               Cow position:chr19:8864942-8864611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 140

               
               
               Conread position:49-384
               
               
               Cow position:chr19:28554150-28554482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):11, 48

               
               
               Conread position:49-384
               
               
               Cow position:chr19:55951964-55952288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):20, 43

               
               
               Conread position:49-413
               
               
               Cow position:chr19:1791495-1791876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):98, 250

               
               
               Conread position:50-225
               
               
               Cow position:chr19:27968496-27968672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):97, 66

               
               
               Conread position:50-228
               
               
               Cow position:chr19:17260108-17259928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:50-231
               
               
               Cow position:chr19:43896499-43896326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:50-237
               
               
               Cow position:chr19:21790931-21790746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:50-238
               
               
               Cow position:chr19:19738201-19738011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 128

               
               
               Conread position:50-240
               
               
               Cow position:chr19:41188034-41187848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):115, 88

               
               
               Conread position:50-244
               
               
               Cow position:chr19:41718765-41718959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):114, 14

               
               
               Conread position:50-247
               
               
               Cow position:chr19:47363866-47363667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):94, 43

               
               
               Conread position:50-248
               
               
               Cow position:chr19:41946918-41946717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:50-254
               
               
               Cow position:chr19:42776631-42776426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):104, 15

               
               
               Conread position:50-255
               
               
               Cow position:chr19:10574068-10574275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):107, 139

               
               
               Conread position:50-257
               
               
               Cow position:chr19:11816525-11816731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):71, 92

               
               
               Conread position:50-275
               
               
               Cow position:chr19:8185407-8185176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:50-282
               
               
               Cow position:chr19:26269026-26269262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):11, 213

               
               
               Conread position:50-282
               
               
               Cow position:chr19:38732336-38732105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 96

               
               
               Conread position:50-290
               
               
               Cow position:chr19:23756553-23756784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):214, 78

               
               
               Conread position:50-309
               
               
               Cow position:chr19:10238935-10238675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 103

               
               
               Conread position:50-328
               
               
               Cow position:chr19:11194566-11194842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):64, 92

               
               
               Conread position:50-330
               
               
               Cow position:chr19:7147856-7148146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):11, 138

               
               
               Conread position:50-332
               
               
               Cow position:chr19:12052650-12052930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:50-332
               
               
               Cow position:chr19:12067941-12067661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 14

               
               
               Conread position:50-342
               
               
               Cow position:chr19:41695475-41695758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):213, 45

               
               
               Conread position:50-347
               
               
               Cow position:chr19:52458325-52458622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:50-348
               
               
               Cow position:chr19:43413977-43413681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 90

               
               
               Conread position:50-366
               
               
               Cow position:chr19:750388-750093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):212, 79

               
               
               Conread position:50-368
               
               
               Cow position:chr19:5115694-5115994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):214, 72

               
               
               Conread position:50-376
               
               
               Cow position:chr19:7668893-7668572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 159

               
               
               Conread position:50-377
               
               
               Cow position:chr19:52187681-52187366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 15

               
               
               Conread position:50-378
               
               
               Cow position:chr19:9531446-9531108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):97, 22

               
               
               Conread position:50-378
               
               
               Cow position:chr19:25382484-25382827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):94, 130

               
               
               Conread position:50-378
               
               
               Cow position:chr19:55957370-55957702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:50-383
               
               
               Cow position:chr19:25673321-25673654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:50-383
               
               
               Cow position:chr19:30471158-30471476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):15, 91

               
               
               Conread position:50-384
               
               
               Cow position:chr19:1355804-1355468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):86, 126

               
               
               Conread position:50-384
               
               
               Cow position:chr19:8869773-8869444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):115, 62

               
               
               Conread position:50-384
               
               
               Cow position:chr19:11003430-11003761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):90, 7

               
               
               Conread position:50-384
               
               
               Cow position:chr19:11376223-11376540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):214, 74

               
               
               Conread position:50-384
               
               
               Cow position:chr19:16621158-16621487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 104

               
               
               Conread position:50-384
               
               
               Cow position:chr19:21199348-21199002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:50-384
               
               
               Cow position:chr19:39361350-39361007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):85, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr19:43035441-43035107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 227

               
               
               Conread position:50-384
               
               
               Cow position:chr19:51285836-51285496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 39

               
               
               Conread position:50-384
               
               
               Cow position:chr19:52456557-52456892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):77, 7

               
               
               Conread position:50-394
               
               
               Cow position:chr19:35847102-35846755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):132, 249

               
               
               Conread position:51-282
               
               
               Cow position:chr19:10908822-10908606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):213, 94

               
               
               Conread position:51-305
               
               
               Cow position:chr19:32437706-32437955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):14, 118

               
               
               Conread position:51-331
               
               
               Cow position:chr19:8965467-8965180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):75, 6

               
               
               Conread position:51-332
               
               
               Cow position:chr19:25763302-25763030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):213, 44

               
               
               Conread position:51-348
               
               
               Cow position:chr19:14631844-14632134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:51-383
               
               
               Cow position:chr19:20622854-20622524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):48, 55

               
               
               Conread position:51-384
               
               
               Cow position:chr19:3217200-3216883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):257, 28

               
               
               Conread position:52-225
               
               
               Cow position:chr19:12686025-12685854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:52-238
               
               
               Cow position:chr19:6914938-6914751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 139

               
               
               Conread position:52-241
               
               
               Cow position:chr19:31729461-31729271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):95, 21

               
               
               Conread position:52-257
               
               
               Cow position:chr19:13996229-13996437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:52-297
               
               
               Cow position:chr19:4587532-4587787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):92, 34

               
               
               Conread position:52-326
               
               
               Cow position:chr19:11559840-11560120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 13

               
               
               Conread position:52-332
               
               
               Cow position:chr19:34420604-34420330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 12

               
               
               Conread position:52-384
               
               
               Cow position:chr19:20935949-20935619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):66, 94

               
               
               Conread position:52-384
               
               
               Cow position:chr19:54943163-54942838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):12, 93

               
               
               Conread position:53-230
               
               
               Cow position:chr19:14596890-14596708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):74, 131

               
               
               Conread position:53-241
               
               
               Cow position:chr19:1614969-1614781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 104

               
               
               Conread position:53-242
               
               
               Cow position:chr19:2793463-2793651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):13, 127

               
               
               Conread position:53-272
               
               
               Cow position:chr19:17355054-17354834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):96, 116

               
               
               Conread position:53-272
               
               
               Cow position:chr19:35246141-35245918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 128

               
               
               Conread position:53-280
               
               
               Cow position:chr19:27965949-27966178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):13, 135

               
               
               Conread position:53-328
               
               
               Cow position:chr19:51970061-51970324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):243, 87

               
               
               Conread position:53-332
               
               
               Cow position:chr19:22872753-22873036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 135

               
               
               Conread position:53-339
               
               
               Cow position:chr19:23889291-23889571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 224

               
               
               Conread position:53-339
               
               
               Cow position:chr19:33575714-33575433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 75

               
               
               Conread position:53-344
               
               
               Cow position:chr19:40126970-40127261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 94

               
               
               Conread position:53-346
               
               
               Cow position:chr19:39584143-39583844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):88, 99

               
               
               Conread position:53-348
               
               
               Cow position:chr19:37466866-37467159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):211, 83

               
               
               Conread position:53-352
               
               
               Cow position:chr19:20665873-20666174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):94, 11

               
               
               Conread position:53-374
               
               
               Cow position:chr19:11110534-11110857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):99, 172

               
               
               Conread position:53-377
               
               
               Cow position:chr19:24005846-24005539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:53-378
               
               
               Cow position:chr19:36845440-36845123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 54

               
               
               Conread position:53-379
               
               
               Cow position:chr19:34166563-34166241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):96, 52

               
               
               Conread position:53-380
               
               
               Cow position:chr19:38393004-38392671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:53-382
               
               
               Cow position:chr19:41946376-41946053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 26

               
               
               Conread position:53-383
               
               
               Cow position:chr19:42695184-42694858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):211, 75

               
               
               Conread position:53-384
               
               
               Cow position:chr19:11758434-11758738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):211, 100

               
               
               Conread position:53-384
               
               
               Cow position:chr19:16567354-16567023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):54, 33

               
               
               Conread position:53-384
               
               
               Cow position:chr19:27611986-27612305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:241
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):160, 23

               
               
               Conread position:53-385
               
               
               Cow position:chr19:6334327-6334021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):16, 69

               
               
               Conread position:53-385
               
               
               Cow position:chr19:23304294-23304633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):211, 197

               
               
               Conread position:53-393
               
               
               Cow position:chr19:33518615-33518961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):116, 73

               
               
               Conread position:54-218
               
               
               Cow position:chr19:32938053-32937893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:54-220
               
               
               Cow position:chr19:25572967-25572800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:54-241
               
               
               Cow position:chr19:41089421-41089612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 96

               
               
               Conread position:54-245
               
               
               Cow position:chr19:46822903-46822714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:54-275
               
               
               Cow position:chr19:55438903-55438676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):92, 46

               
               
               Conread position:54-303
               
               
               Cow position:chr19:28810122-28810372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):149, 77

               
               
               Conread position:54-321
               
               
               Cow position:chr19:18504972-18505238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):100, 113

               
               
               Conread position:54-325
               
               
               Cow position:chr19:1978369-1978092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):179, 66

               
               
               Conread position:54-332
               
               
               Cow position:chr19:35321943-35322219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):208, 57

               
               
               Conread position:54-348
               
               
               Cow position:chr19:55247827-55247539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 92

               
               
               Conread position:54-382
               
               
               Cow position:chr19:56149869-56150202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):210, 75

               
               
               Conread position:54-384
               
               
               Cow position:chr19:38111662-38111337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):34, 164

               
               
               Conread position:54-384
               
               
               Cow position:chr19:56063248-56063569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):208, 72

               
               
               Conread position:55-327
               
               
               Cow position:chr19:6344276-6343991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):14, 149

               
               
               Conread position:55-332
               
               
               Cow position:chr19:4987574-4987850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):209, 18

               
               
               Conread position:55-384
               
               
               Cow position:chr19:22765806-22765486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 40

               
               
               Conread position:55-384
               
               
               Cow position:chr19:42904185-42903873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):211, 36

               
               
               Conread position:56-193
               
               
               Cow position:chr19:49959062-49958926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:56-217
               
               
               Cow position:chr19:22414075-22414234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:56-225
               
               
               Cow position:chr19:4485956-4486126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 49

               
               
               Conread position:56-241
               
               
               Cow position:chr19:24220313-24220492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):13, 142

               
               
               Conread position:56-279
               
               
               Cow position:chr19:34654418-34654641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):209, 166

               
               
               Conread position:56-315
               
               
               Cow position:chr19:37067325-37067072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):203, 73

               
               
               Conread position:56-373
               
               
               Cow position:chr19:39384855-39385156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):75, 30

               
               
               Conread position:56-373
               
               
               Cow position:chr19:51750975-51751293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):208, 27

               
               
               Conread position:57-220
               
               
               Cow position:chr19:20517615-20517465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:57-228
               
               
               Cow position:chr19:38948088-38948270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):70, 155

               
               
               Conread position:57-251
               
               
               Cow position:chr19:52694496-52694310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:57-274
               
               
               Cow position:chr19:44572279-44572057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):81, 170

               
               
               Conread position:57-299
               
               
               Cow position:chr19:10538367-10538599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):207, 84

               
               
               Conread position:57-378
               
               
               Cow position:chr19:53542696-53543019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 135

               
               
               Conread position:57-379
               
               
               Cow position:chr19:19489627-19489948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:57-382
               
               
               Cow position:chr19:53623760-53623429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 156

               
               
               Conread position:57-383
               
               
               Cow position:chr19:12601993-12601673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):209, 71

               
               
               Conread position:57-383
               
               
               Cow position:chr19:17972078-17972390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):210, 16

               
               
               Conread position:57-384
               
               
               Cow position:chr19:15853117-15852813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):207, 88

               
               
               Conread position:57-384
               
               
               Cow position:chr19:15887125-15887457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 294

               
               
               Conread position:57-384
               
               
               Cow position:chr19:22043166-22043486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 95

               
               
               Conread position:57-384
               
               
               Cow position:chr19:33903235-33903557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 70

               
               
               Conread position:57-384
               
               
               Cow position:chr19:44838749-44839047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):207, 82

               
               
               Conread position:57-384
               
               
               Cow position:chr19:50162186-50161863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):177, 88

               
               
               Conread position:57-385
               
               
               Cow position:chr19:25854688-25855029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):90, 119

               
               
               Conread position:58-275
               
               
               Cow position:chr19:25835147-25835354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):206, 65

               
               
               Conread position:58-325
               
               
               Cow position:chr19:42767913-42768175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 71

               
               
               Conread position:58-332
               
               
               Cow position:chr19:4459252-4459524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):106, 87

               
               
               Conread position:58-375
               
               
               Cow position:chr19:2577750-2577442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):206, 167

               
               
               Conread position:58-382
               
               
               Cow position:chr19:268538-268221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 63

               
               
               Conread position:58-384
               
               
               Cow position:chr19:3245865-3246185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):63, 145

               
               
               Conread position:58-384
               
               
               Cow position:chr19:14253825-14253503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):86, 125

               
               
               Conread position:58-384
               
               
               Cow position:chr19:15789895-15789575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):78, 101

               
               
               Conread position:59-233
               
               
               Cow position:chr19:14545506-14545330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):97, 119

               
               
               Conread position:59-254
               
               
               Cow position:chr19:36978460-36978262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):88, 119

               
               
               Conread position:59-272
               
               
               Cow position:chr19:49290269-49290478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):205, 93

               
               
               Conread position:59-283
               
               
               Cow position:chr19:37406105-37405882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):85, 35

               
               
               Conread position:59-322
               
               
               Cow position:chr19:24693193-24692934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:167
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):205, 36

               
               
               Conread position:59-328
               
               
               Cow position:chr19:8244982-8245255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 101

               
               
               Conread position:59-330
               
               
               Cow position:chr19:6309733-6309998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):105, 68

               
               
               Conread position:59-366
               
               
               Cow position:chr19:26754227-26753922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):90, 26

               
               
               Conread position:59-378
               
               
               Cow position:chr19:42564336-42564009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):75, 281

               
               
               Conread position:59-382
               
               
               Cow position:chr19:29368584-29368268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 86

               
               
               Conread position:59-382
               
               
               Cow position:chr19:29626089-29625773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 86

               
               
               Conread position:59-383
               
               
               Cow position:chr19:11439302-11438975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):45, 128

               
               
               Conread position:59-383
               
               
               Cow position:chr19:43431133-43431456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):77, 133

               
               
               Conread position:59-384
               
               
               Cow position:chr19:12155053-12154714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 123

               
               
               Conread position:59-384
               
               
               Cow position:chr19:33033255-33033576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):213, 69

               
               
               Conread position:59-384
               
               
               Cow position:chr19:34955525-34955828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 20

               
               
               Conread position:59-384
               
               
               Cow position:chr19:36097413-36097088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):85, 128

               
               
               Conread position:59-384
               
               
               Cow position:chr19:48960582-48960260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 96

               
               
               Conread position:59-384
               
               
               Cow position:chr19:51620988-51621319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):97, 232

               
               
               Conread position:59-411
               
               
               Cow position:chr19:36222122-36221765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):178, 102

               
               
               Conread position:60-210
               
               
               Cow position:chr19:41388948-41388801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:60-237
               
               
               Cow position:chr19:49409513-49409681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:60-254
               
               
               Cow position:chr19:12945116-12945311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 53

               
               
               Conread position:60-258
               
               
               Cow position:chr19:4100380-4100574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:60-260
               
               
               Cow position:chr19:28137335-28137145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:60-267
               
               
               Cow position:chr19:12279914-12279711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):204, 26

               
               
               Conread position:60-274
               
               
               Cow position:chr19:35921039-35920826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):199, 64

               
               
               Conread position:60-275
               
               
               Cow position:chr19:52728799-52728586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):122, 92

               
               
               Conread position:60-309
               
               
               Cow position:chr19:25726697-25726939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):59, 31

               
               
               Conread position:60-335
               
               
               Cow position:chr19:11646752-11646486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):241, 55

               
               
               Conread position:60-348
               
               
               Cow position:chr19:41024409-41024125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):204, 81

               
               
               Conread position:60-351
               
               
               Cow position:chr19:18054071-18054347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):204, 81

               
               
               Conread position:60-361
               
               
               Cow position:chr19:38500344-38500052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 68

               
               
               Conread position:60-367
               
               
               Cow position:chr19:24453320-24453627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):76, 130

               
               
               Conread position:60-379
               
               
               Cow position:chr19:53791245-53791555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):111, 82

               
               
               Conread position:60-384
               
               
               Cow position:chr19:24145209-24144886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):125, 26

               
               
               Conread position:60-384
               
               
               Cow position:chr19:24759699-24760019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 63

               
               
               Conread position:60-384
               
               
               Cow position:chr19:41497455-41497765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:60-384
               
               
               Cow position:chr19:44397695-44397368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):63, 25

               
               
               Conread position:60-384
               
               
               Cow position:chr19:55395096-55394771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):84, 47

               
               
               Conread position:60-387
               
               
               Cow position:chr19:10186695-10186364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 165

               
               
               Conread position:60-401
               
               
               Cow position:chr19:3621617-3621281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 88

               
               
               Conread position:61-209
               
               
               Cow position:chr19:18050976-18051123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 15

               
               
               Conread position:61-237
               
               
               Cow position:chr19:46160204-46160035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):109, 26

               
               
               Conread position:61-282
               
               
               Cow position:chr19:10930239-10930450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:61-289
               
               
               Cow position:chr19:30227709-30227480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):86, 18

               
               
               Conread position:61-348
               
               
               Cow position:chr19:19549368-19549647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):203, 82

               
               
               Conread position:61-377
               
               
               Cow position:chr19:39664388-39664707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):93, 37

               
               
               Conread position:61-378
               
               
               Cow position:chr19:35107704-35107399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):10, 42

               
               
               Conread position:61-379
               
               
               Cow position:chr19:23378864-23378557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 228

               
               
               Conread position:61-383
               
               
               Cow position:chr19:30232897-30232595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):75, 30

               
               
               Conread position:61-384
               
               
               Cow position:chr19:10213854-10213535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 12

               
               
               Conread position:62-255
               
               
               Cow position:chr19:51294099-51294289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):84, 121

               
               
               Conread position:62-384
               
               
               Cow position:chr19:35762069-35762387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 80

               
               
               Conread position:62-384
               
               
               Cow position:chr19:39751657-39751350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):151, 80

               
               
               Conread position:63-235
               
               
               Cow position:chr19:25916091-25915927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:63-365
               
               
               Cow position:chr19:34757807-34758114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):64, 231

               
               
               Conread position:63-366
               
               
               Cow position:chr19:32505923-32506239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):68, 249

               
               
               Conread position:64-241
               
               
               Cow position:chr19:33233766-33233591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:64-241
               
               
               Cow position:chr19:35623577-35623402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):85, 137

               
               
               Conread position:64-321
               
               
               Cow position:chr19:43373232-43372972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):57, 229

               
               
               Conread position:64-337
               
               
               Cow position:chr19:8128492-8128214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):52, 47

               
               
               Conread position:64-378
               
               
               Cow position:chr19:22449733-22450058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):80, 94

               
               
               Conread position:64-379
               
               
               Cow position:chr19:6079166-6079489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):80, 171

               
               
               Conread position:64-382
               
               
               Cow position:chr19:39576390-39576703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 54

               
               
               Conread position:64-384
               
               
               Cow position:chr19:18129744-18129425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):83, 156

               
               
               Conread position:64-394
               
               
               Cow position:chr19:34288199-34287872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 83

               
               
               Conread position:64-404
               
               
               Cow position:chr19:36139038-36138702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):102, 62

               
               
               Conread position:65-383
               
               
               Cow position:chr19:13130047-13129739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 51

               
               
               Conread position:65-384
               
               
               Cow position:chr19:46455024-46454719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):199, 77

               
               
               Conread position:67-272
               
               
               Cow position:chr19:6854105-6854303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):197, 28

               
               
               Conread position:68-257
               
               
               Cow position:chr19:39585924-39586114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 169

               
               
               Conread position:68-330
               
               
               Cow position:chr19:13488326-13488586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):181, 73

               
               
               Conread position:68-377
               
               
               Cow position:chr19:39103833-39104131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):81, 104

               
               
               Conread position:68-384
               
               
               Cow position:chr19:15067829-15068137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):36, 60

               
               
               Conread position:69-241
               
               
               Cow position:chr19:39698466-39698294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:69-364
               
               
               Cow position:chr19:25526458-25526166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):181, 56

               
               
               Conread position:70-384
               
               
               Cow position:chr19:11171037-11171356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):24, 108

               
               
               Conread position:71-329
               
               
               Cow position:chr19:25410677-25410923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):193, 83

               
               
               Conread position:71-384
               
               
               Cow position:chr19:39057426-39057109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 247

               
               
               Conread position:72-262
               
               
               Cow position:chr19:19916247-19916433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:72-355
               
               
               Cow position:chr19:26022284-26022571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):74, 104

               
               
               Conread position:72-368
               
               
               Cow position:chr19:741998-742289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):74, 104

               
               
               Conread position:72-380
               
               
               Cow position:chr19:42517078-42517388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 213

               
               
               Conread position:72-382
               
               
               Cow position:chr19:35018055-35018377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):55, 162

               
               
               Conread position:72-384
               
               
               Cow position:chr19:21378290-21378604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 84

               
               
               Conread position:72-384
               
               
               Cow position:chr19:21817142-21816827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):74, 105

               
               
               Conread position:72-384
               
               
               Cow position:chr19:26975895-26976194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):192, 56

               
               
               Conread position:72-384
               
               
               Cow position:chr19:47453607-47453301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 84

               
               
               Conread position:73-274
               
               
               Cow position:chr19:34608024-34608223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):191, 148

               
               
               Conread position:73-316
               
               
               Cow position:chr19:33988244-33987997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):163, 72

               
               
               Conread position:73-378
               
               
               Cow position:chr19:6687822-6688127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):55, 158

               
               
               Conread position:73-384
               
               
               Cow position:chr19:41585147-41584840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 212

               
               
               Conread position:73-384
               
               
               Cow position:chr19:55688519-55688834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:74-241
               
               
               Cow position:chr19:35444330-35444499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):71, 116

               
               
               Conread position:74-273
               
               
               Cow position:chr19:4117201-4117389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):190, 38

               
               
               Conread position:74-321
               
               
               Cow position:chr19:33913704-33913452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:74-345
               
               
               Cow position:chr19:3497773-3498049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):57, 151

               
               
               Conread position:74-348
               
               
               Cow position:chr19:18826386-18826660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):114, 191

               
               
               Conread position:74-368
               
               
               Cow position:chr19:10929620-10929322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):52, 81

               
               
               Conread position:74-382
               
               
               Cow position:chr19:9583450-9583163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):190, 53

               
               
               Conread position:76-374
               
               
               Cow position:chr19:23394957-23394661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 85

               
               
               Conread position:76-384
               
               
               Cow position:chr19:7741429-7741740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):23, 87

               
               
               Conread position:79-314
               
               
               Cow position:chr19:39613003-39613235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):184, 49

               
               
               Conread position:79-345
               
               
               Cow position:chr19:31810968-31811237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:80-364
               
               
               Cow position:chr19:31652729-31652446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):69, 97

               
               
               Conread position:80-384
               
               
               Cow position:chr19:14472610-14472912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):69, 99

               
               
               Conread position:81-384
               
               
               Cow position:chr19:54121432-54121144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):183, 75

               
               
               Conread position:86-384
               
               
               Cow position:chr19:1664021-1664325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):48, 257

               
               
               Conread position:88-348
               
               
               Cow position:chr19:48744114-48744366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):178, 40

               
               
               Conread position:90-343
               
               
               Cow position:chr19:12645486-12645737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):74, 38

               
               
               Conread position:90-384
               
               
               Cow position:chr19:10545548-10545840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 55

               
               
               Conread position:91-384
               
               
               Cow position:chr19:32457801-32457508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):81, 101

               
               
               Conread position:95-385
               
               
               Cow position:chr19:47859158-47859452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):51, 78

               
               
               Conread position:98-332
               
               
               Cow position:chr19:30910288-30910060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:98-365
               
               
               Cow position:chr19:47987007-47986740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):166, 42

               
               
               Conread position:102-282
               
               
               Cow position:chr19:24253157-24253333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):162, 16

               
               
               Conread position:104-384
               
               
               Cow position:chr19:23403497-23403775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):50, 72

               
               
               Conread position:107-366
               
               
               Cow position:chr19:34819044-34819306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:108-365
               
               
               Cow position:chr19:25397842-25397578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):31, 68

               
               
               Conread position:109-348
               
               
               Cow position:chr19:16104944-16105181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):155, 43

               
               
               Conread position:128-283
               
               
               Cow position:chr19:19180237-19180390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):50, 28

               
               
               Conread position:128-372
               
               
               Cow position:chr19:25853694-25853438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):112, 23

               
               
               Conread position:128-378
               
               
               Cow position:chr19:39254326-39254580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-382
               
               
               Cow position:chr19:25807188-25807435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-383
               
               
               Cow position:chr19:25652640-25652888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):136, 19

               
               
               Conread position:128-384
               
               
               Cow position:chr19:7884696-7884448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):43, 8

               
               
               Conread position:128-384
               
               
               Cow position:chr19:52735228-52734983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):16, 25

               
               
               Conread position:129-282
               
               
               Cow position:chr19:28135682-28135529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):138, 117

               
               
               Conread position:129-384
               
               
               Cow position:chr19:8033867-8033611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):142, 34

               
               
               Conread position:129-384
               
               
               Cow position:chr19:20984653-20984904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):131, 163

               
               
               Conread position:129-384
               
               
               Cow position:chr19:21065886-21065633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):81, 50

               
               
               Conread position:129-384
               
               
               Cow position:chr19:33237294-33237041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):135, 173

               
               
               Conread position:130-394
               
               
               Cow position:chr19:51230705-51230970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):132, 164

               
               
               Conread position:130-411
               
               
               Cow position:chr19:31846434-31846704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):48, 17

               
               
               Conread position:131-296
               
               
               Cow position:chr19:12705717-12705884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 157

               
               
               Conread position:131-301
               
               
               Cow position:chr19:22438759-22438592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):133, 22

               
               
               Conread position:131-331
               
               
               Cow position:chr19:39781640-39781435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:131-378
               
               
               Cow position:chr19:6849077-6849319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):132, 154

               
               
               Conread position:131-378
               
               
               Cow position:chr19:22134036-22134273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:131-378
               
               
               Cow position:chr19:35742284-35742032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:131-382
               
               
               Cow position:chr19:23222748-23222503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:131-382
               
               
               Cow position:chr19:34001326-34001076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):22, 153

               
               
               Conread position:131-382
               
               
               Cow position:chr19:36722427-36722191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):133, 76

               
               
               Conread position:131-384
               
               
               Cow position:chr19:4800861-4800607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):13, 147

               
               
               Conread position:131-384
               
               
               Cow position:chr19:7404257-7404515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):13, 54

               
               
               Conread position:131-384
               
               
               Cow position:chr19:22798960-22799214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):125, 20

               
               
               Conread position:131-384
               
               
               Cow position:chr19:39485435-39485184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):140, 20

               
               
               Conread position:132-321
               
               
               Cow position:chr19:42236147-42235955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:132-367
               
               
               Cow position:chr19:11565033-11565270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 163

               
               
               Conread position:132-384
               
               
               Cow position:chr19:10242694-10242451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):133, 29

               
               
               Conread position:132-384
               
               
               Cow position:chr19:19919347-19919596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:133-378
               
               
               Cow position:chr19:8375188-8375434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):129, 19

               
               
               Conread position:133-383
               
               
               Cow position:chr19:9541787-9542027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):131, 14

               
               
               Conread position:133-384
               
               
               Cow position:chr19:12711761-12712011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):131, 26

               
               
               Conread position:133-384
               
               
               Cow position:chr19:14593171-14592919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):131, 18

               
               
               Conread position:133-384
               
               
               Cow position:chr19:30886510-30886260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):129, 13

               
               
               Conread position:133-399
               
               
               Cow position:chr19:33469137-33468876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):126, 176

               
               
               Conread position:134-384
               
               
               Cow position:chr19:34619916-34620165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:135-384
               
               
               Cow position:chr19:36060052-36059800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):128, 194

               
               
               Conread position:135-385
               
               
               Cow position:chr19:29115855-29115607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):122, 17

               
               
               Conread position:136-272
               
               
               Cow position:chr19:34459360-34459494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:136-384
               
               
               Cow position:chr19:18786209-18786455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):50, 42

               
               
               Conread position:140-344
               
               
               Cow position:chr19:30534038-30533840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 51

               
               
               Conread position:141-346
               
               
               Cow position:chr19:6891340-6891541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):124, 10

               
               
               Conread position:141-384
               
               
               Cow position:chr19:33290592-33290351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):25, 43

               
               
               Conread position:142-366
               
               
               Cow position:chr19:11212293-11212516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):122, 16

               
               
               Conread position:142-383
               
               
               Cow position:chr19:15862943-15863175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):68, 91

               
               
               Conread position:145-383
               
               
               Cow position:chr19:36125691-36125454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):101, 146

               
               
               Conread position:146-383
               
               
               Cow position:chr19:16693928-16694175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):108, 241

               
               
               Conread position:146-384
               
               
               Cow position:chr19:11443094-11442846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:147-368
               
               
               Cow position:chr19:35540401-35540178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):71, 142

               
               
               Conread position:147-385
               
               
               Cow position:chr19:4503323-4503081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 70

               
               
               Conread position:148-384
               
               
               Cow position:chr19:20670805-20671031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):116, 137

               
               
               Conread position:151-382
               
               
               Cow position:chr19:52773073-52773311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 103

               
               
               Conread position:152-379
               
               
               Cow position:chr19:6516365-6516137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):6, 106

               
               
               Conread position:152-381
               
               
               Cow position:chr19:20310542-20310762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):112, 67

               
               
               Conread position:152-383
               
               
               Cow position:chr19:21363340-21363573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):112, 185

               
               
               Conread position:152-388
               
               
               Cow position:chr19:6049579-6049805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):112, 70

               
               
               Conread position:153-382
               
               
               Cow position:chr19:25628040-25628266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):110, 180

               
               
               Conread position:153-384
               
               
               Cow position:chr19:25655130-25655369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):18, 26

               
               
               Conread position:153-384
               
               
               Cow position:chr19:43441264-43441031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):111, 88

               
               
               Conread position:154-308
               
               
               Cow position:chr19:1853948-1854101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):13, 68

               
               
               Conread position:154-349
               
               
               Cow position:chr19:5656029-5656215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):108, 121

               
               
               Conread position:154-378
               
               
               Cow position:chr19:31595396-31595173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):110, 131

               
               
               Conread position:155-383
               
               
               Cow position:chr19:3496080-3496304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):73, 13

               
               
               Conread position:155-383
               
               
               Cow position:chr19:30552111-30551894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):109, 121

               
               
               Conread position:155-385
               
               
               Cow position:chr19:40450112-40449879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):109, 68

               
               
               Conread position:155-410
               
               
               Cow position:chr19:40026836-40027092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):114, 67

               
               
               Conread position:156-348
               
               
               Cow position:chr19:3834366-3834176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):142, 128

               
               
               Conread position:161-282
               
               
               Cow position:chr19:37633137-37633259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:161-384
               
               
               Cow position:chr19:47110129-47109904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:163-387
               
               
               Cow position:chr19:13757337-13757114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):48, 11

               
               
               Conread position:164-300
               
               
               Cow position:chr19:45396432-45396569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 125

               
               
               Conread position:165-348
               
               
               Cow position:chr19:33981040-33980862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 56

               
               
               Conread position:171-397
               
               
               Cow position:chr19:17273662-17273877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):110, 66

               
               
               Conread position:174-289
               
               
               Cow position:chr19:18892042-18892158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:174-384
               
               
               Cow position:chr19:31536202-31535992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):90, 115

               
               
               Conread position:179-382
               
               
               Cow position:chr19:25999688-25999497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):85, 43

               
               
               Conread position:180-384
               
               
               Cow position:chr19:2734519-2734316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):84, 119

               
               
               Conread position:181-378
               
               
               Cow position:chr19:10173047-10173244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):34, 52

               
               
               Conread position:185-384
               
               
               Cow position:chr19:4445557-4445755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):66, 78

               
               
               Conread position:187-384
               
               
               Cow position:chr19:42240233-42240426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):121, 35

               
               
               Conread position:187-385
               
               
               Cow position:chr19:52196771-52196572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):5, 47

               
               
               Conread position:192-382
               
               
               Cow position:chr19:42205983-42205800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):72, 48

               
               
               Conread position:193-384
               
               
               Cow position:chr19:17478903-17479099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):90, 146

               
               
               Conread position:194-378
               
               
               Cow position:chr19:8270545-8270729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):89, 84

               
               
               Conread position:194-378
               
               
               Cow position:chr19:25143151-25142966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):57, 69

               
               
               Conread position:194-384
               
               
               Cow position:chr19:9408742-9408549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 166

               
               
               Conread position:195-349
               
               
               Cow position:chr19:25954684-25954838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):69, 93

               
               
               Conread position:197-384
               
               
               Cow position:chr19:33823371-33823182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 84

               
               
               Conread position:205-384
               
               
               Cow position:chr19:37646792-37646972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):79, 33

               
               
               Conread position:223-376
               
               
               Cow position:chr19:15767229-15767074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):45, 73

               
               
               Conread position:224-384
               
               
               Cow position:chr19:32451110-32450947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 145

               
               
               Conread position:229-384
               
               
               Cow position:chr19:20693520-20693362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1-252
               
               
               Cow position:chr2:9062935-9062686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):145, 42

               
               
               Conread position:1-252
               
               
               Cow position:chr2:29479823-29480074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):153, 52

               
               
               Conread position:1-282
               
               
               Cow position:chr2:27128563-27128851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):33, 179

               
               
               Conread position:1-332
               
               
               Cow position:chr2:80607004-80607343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):67, 150

               
               
               Conread position:1-384
               
               
               Cow position:chr2:25757370-25757751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 67

               
               
               Conread position:2-252
               
               
               Cow position:chr2:78379163-78379410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):34, 51

               
               
               Conread position:2-262
               
               
               Cow position:chr2:2437353-2437605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 52

               
               
               Conread position:2-320
               
               
               Cow position:chr2:66237452-66237140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):152, 46

               
               
               Conread position:2-383
               
               
               Cow position:chr2:29735083-29734701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:261
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):139, 27

               
               
               Conread position:2-384
               
               
               Cow position:chr2:24393430-24393808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:274
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):27, 251

               
               
               Conread position:3-281
               
               
               Cow position:chr2:18589275-18589552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):56, 108

               
               
               Conread position:3-384
               
               
               Cow position:chr2:19294843-19294471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):263, 47

               
               
               Conread position:3-384
               
               
               Cow position:chr2:67302265-67301909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):146, 50

               
               
               Conread position:3-385
               
               
               Cow position:chr2:44986067-44986447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 176

               
               
               Conread position:4-209
               
               
               Cow position:chr2:47230632-47230446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:4-325
               
               
               Cow position:chr2:30631577-30631250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:4-377
               
               
               Cow position:chr2:25283369-25282997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):23, 47

               
               
               Conread position:4-384
               
               
               Cow position:chr2:78230072-78229693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:5-304
               
               
               Cow position:chr2:33493162-33493454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):161, 17

               
               
               Conread position:6-255
               
               
               Cow position:chr2:13468465-13468221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:6-378
               
               
               Cow position:chr2:16071154-16071504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:7-384
               
               
               Cow position:chr2:54790528-54790159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):189, 43

               
               
               Conread position:9-343
               
               
               Cow position:chr2:31673512-31673187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 41

               
               
               Conread position:9-384
               
               
               Cow position:chr2:33496953-33497323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):125, 18

               
               
               Conread position:12-244
               
               
               Cow position:chr2:67047674-67047436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):16, 185

               
               
               Conread position:12-272
               
               
               Cow position:chr2:5300845-5300584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):134, 45

               
               
               Conread position:13-372
               
               
               Cow position:chr2:29343152-29343522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:249
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):40, 118

               
               
               Conread position:13-386
               
               
               Cow position:chr2:26170990-26170618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:255
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):140, 11

               
               
               Conread position:14-378
               
               
               Cow position:chr2:74354154-74353781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):9, 167

               
               
               Conread position:17-273
               
               
               Cow position:chr2:63050930-63051189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):25, 171

               
               
               Conread position:17-385
               
               
               Cow position:chr2:54654368-54654742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 120

               
               
               Conread position:18-251
               
               
               Cow position:chr2:34570765-34570999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):131, 29

               
               
               Conread position:18-378
               
               
               Cow position:chr2:14709885-14710223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:18-378
               
               
               Cow position:chr2:29160153-29159795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):57, 269

               
               
               Conread position:18-381
               
               
               Cow position:chr2:56867061-56867419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:18-384
               
               
               Cow position:chr2:16594844-16594486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):136, 9

               
               
               Conread position:18-384
               
               
               Cow position:chr2:16633173-16632815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):136, 9

               
               
               Conread position:18-384
               
               
               Cow position:chr2:80275049-80275415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 221

               
               
               Conread position:20-384
               
               
               Cow position:chr2:41622731-41622360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):20, 147

               
               
               Conread position:20-384
               
               
               Cow position:chr2:58135148-58135519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:21-238
               
               
               Cow position:chr2:3127835-3128055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):107, 43

               
               
               Conread position:21-384
               
               
               Cow position:chr2:1304189-1303826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):127, 73

               
               
               Conread position:23-238
               
               
               Cow position:chr2:38954070-38953846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):113, 171

               
               
               Conread position:23-247
               
               
               Cow position:chr2:1923646-1923871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):126, 27

               
               
               Conread position:23-273
               
               
               Cow position:chr2:39334426-39334674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):131, 25

               
               
               Conread position:23-384
               
               
               Cow position:chr2:19211820-19212175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):30, 91

               
               
               Conread position:23-384
               
               
               Cow position:chr2:73636935-73637299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:253
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):103, 14

               
               
               Conread position:24-209
               
               
               Cow position:chr2:1205542-1205356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:24-383
               
               
               Cow position:chr2:41145550-41145192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:247
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):164, 24

               
               
               Conread position:25-335
               
               
               Cow position:chr2:36963757-36963450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:25-348
               
               
               Cow position:chr2:40257182-40257502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 103

               
               
               Conread position:25-384
               
               
               Cow position:chr2:56937915-56937558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:26-247
               
               
               Cow position:chr2:12186859-12186644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:26-332
               
               
               Cow position:chr2:45597211-45596909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 39

               
               
               Conread position:26-347
               
               
               Cow position:chr2:67595779-67596108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):45, 5

               
               
               Conread position:26-368
               
               
               Cow position:chr2:67927559-67927902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:234
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):128, 39

               
               
               Conread position:26-384
               
               
               Cow position:chr2:53650250-53649905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 66

               
               
               Conread position:27-249
               
               
               Cow position:chr2:56102095-56102319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):33, 122

               
               
               Conread position:27-250
               
               
               Cow position:chr2:9476205-9476425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):194, 45

               
               
               Conread position:27-332
               
               
               Cow position:chr2:46614631-46614332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):155, 40

               
               
               Conread position:27-355
               
               
               Cow position:chr2:24217984-24218302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):137, 115

               
               
               Conread position:27-366
               
               
               Cow position:chr2:21049103-21049420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:27-384
               
               
               Cow position:chr2:58074107-58074468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 126

               
               
               Conread position:28-216
               
               
               Cow position:chr2:73650641-73650451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 30

               
               
               Conread position:28-368
               
               
               Cow position:chr2:19499850-19500192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):109, 36

               
               
               Conread position:28-379
               
               
               Cow position:chr2:51097852-51098205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):15, 37

               
               
               Conread position:29-229
               
               
               Cow position:chr2:78116130-78116331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):115, 41

               
               
               Conread position:29-343
               
               
               Cow position:chr2:73023936-73023625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):125, 24

               
               
               Conread position:29-368
               
               
               Cow position:chr2:80241954-80242292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):141, 36

               
               
               Conread position:29-376
               
               
               Cow position:chr2:46052731-46052390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 120

               
               
               Conread position:29-384
               
               
               Cow position:chr2:29779308-29779663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):156, 8

               
               
               Conread position:29-384
               
               
               Cow position:chr2:65587385-65587042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):115, 24

               
               
               Conread position:29-384
               
               
               Cow position:chr2:66403700-66404053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:30-276
               
               
               Cow position:chr2:44495610-44495861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):114, 42

               
               
               Conread position:30-282
               
               
               Cow position:chr2:28330518-28330769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):19, 119

               
               
               Conread position:30-328
               
               
               Cow position:chr2:39371639-39371347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):226, 34

               
               
               Conread position:30-339
               
               
               Cow position:chr2:43136214-43136529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):121, 23

               
               
               Conread position:30-378
               
               
               Cow position:chr2:41915201-41915528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):106, 21

               
               
               Conread position:30-384
               
               
               Cow position:chr2:45484737-45485091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:239
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:30-384
               
               
               Cow position:chr2:46188866-46189221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 123

               
               
               Conread position:30-395
               
               
               Cow position:chr2:85794742-85795096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:31-152
               
               
               Cow position:chr2:65433793-65433675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:31-241
               
               
               Cow position:chr2:66561807-66562021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:31-244
               
               
               Cow position:chr2:11000840-11001053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):122, 19

               
               
               Conread position:31-274
               
               
               Cow position:chr2:39350257-39350507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):31, 194

               
               
               Conread position:31-289
               
               
               Cow position:chr2:83157359-83157099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 157

               
               
               Conread position:31-297
               
               
               Cow position:chr2:23854768-23854501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):98, 22

               
               
               Conread position:31-316
               
               
               Cow position:chr2:43729236-43729521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):115, 16

               
               
               Conread position:31-344
               
               
               Cow position:chr2:38913706-38913397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):175, 20

               
               
               Conread position:31-345
               
               
               Cow position:chr2:18233250-18232934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):123, 33

               
               
               Conread position:31-347
               
               
               Cow position:chr2:30179683-30179988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:31-361
               
               
               Cow position:chr2:41040480-41040812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):97, 34

               
               
               Conread position:31-362
               
               
               Cow position:chr2:51181549-51181879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):113, 22

               
               
               Conread position:31-373
               
               
               Cow position:chr2:61136957-61136627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:31-378
               
               
               Cow position:chr2:6267542-6267891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):118, 18

               
               
               Conread position:31-382
               
               
               Cow position:chr2:29290092-29290431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):228, 23

               
               
               Conread position:31-384
               
               
               Cow position:chr2:1073748-1073410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:31-384
               
               
               Cow position:chr2:9767203-9767560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):157, 33

               
               
               Conread position:31-384
               
               
               Cow position:chr2:45498972-45499325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 123

               
               
               Conread position:31-384
               
               
               Cow position:chr2:47403440-47403080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):116, 156

               
               
               Conread position:31-384
               
               
               Cow position:chr2:51855511-51855863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):123, 33

               
               
               Conread position:31-384
               
               
               Cow position:chr2:71621821-71622172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 33

               
               
               Conread position:31-384
               
               
               Cow position:chr2:80116326-80115978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):10, 34

               
               
               Conread position:31-386
               
               
               Cow position:chr2:42183593-42183249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):233, 22

               
               
               Conread position:31-388
               
               
               Cow position:chr2:80770330-80769991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):178, 33

               
               
               Conread position:32-378
               
               
               Cow position:chr2:59180302-59179947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):28, 106

               
               
               Conread position:32-383
               
               
               Cow position:chr2:46119541-46119883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):41, 25

               
               
               Conread position:32-384
               
               
               Cow position:chr2:2931281-2930930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):122, 17

               
               
               Conread position:32-384
               
               
               Cow position:chr2:27173585-27173247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):232, 42

               
               
               Conread position:33-270
               
               
               Cow position:chr2:52345737-52345974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):116, 18

               
               
               Conread position:33-295
               
               
               Cow position:chr2:1422579-1422318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):40, 191

               
               
               Conread position:33-317
               
               
               Cow position:chr2:2486069-2485787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:33-320
               
               
               Cow position:chr2:12890557-12890847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):136, 17

               
               
               Conread position:33-321
               
               
               Cow position:chr2:81984292-81984003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):121, 17

               
               
               Conread position:33-348
               
               
               Cow position:chr2:40750127-40750443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):111, 17

               
               
               Conread position:33-348
               
               
               Cow position:chr2:63331587-63331889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):55, 89

               
               
               Conread position:33-384
               
               
               Cow position:chr2:41018990-41019337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):214, 83

               
               
               Conread position:33-384
               
               
               Cow position:chr2:54700684-54700330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):133, 142

               
               
               Conread position:33-384
               
               
               Cow position:chr2:73094578-73094911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:247
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):247, 108

               
               
               Conread position:34-229
               
               
               Cow position:chr2:66629419-66629220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):74, 16

               
               
               Conread position:34-291
               
               
               Cow position:chr2:39566470-39566725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):77, 112

               
               
               Conread position:34-303
               
               
               Cow position:chr2:58993361-58993079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):74, 30

               
               
               Conread position:34-320
               
               
               Cow position:chr2:47977815-47978103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):27, 48

               
               
               Conread position:34-325
               
               
               Cow position:chr2:28301434-28301140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):29, 125

               
               
               Conread position:34-378
               
               
               Cow position:chr2:79837498-79837827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):110, 23

               
               
               Conread position:34-384
               
               
               Cow position:chr2:43960404-43960053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):110, 30

               
               
               Conread position:34-384
               
               
               Cow position:chr2:54968239-54967883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):29, 145

               
               
               Conread position:35-289
               
               
               Cow position:chr2:43990995-43990743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):229, 101

               
               
               Conread position:35-290
               
               
               Cow position:chr2:44714455-44714708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):147, 18

               
               
               Conread position:35-384
               
               
               Cow position:chr2:32048703-32048358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):104, 59

               
               
               Conread position:35-384
               
               
               Cow position:chr2:36055557-36055920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:264
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:36-256
               
               
               Cow position:chr2:81294051-81293829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):118, 27

               
               
               Conread position:36-320
               
               
               Cow position:chr2:64230648-64230360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:36-379
               
               
               Cow position:chr2:40597795-40597462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):110, 28

               
               
               Conread position:37-220
               
               
               Cow position:chr2:38884201-38884382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:37-228
               
               
               Cow position:chr2:44313494-44313686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):107, 27

               
               
               Conread position:37-247
               
               
               Cow position:chr2:81913220-81913012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):112, 16

               
               
               Conread position:37-258
               
               
               Cow position:chr2:26454429-26454650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):119, 27

               
               
               Conread position:37-272
               
               
               Cow position:chr2:47070934-47070695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):96, 126

               
               
               Conread position:37-285
               
               
               Cow position:chr2:47879458-47879216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):228, 89

               
               
               Conread position:37-332
               
               
               Cow position:chr2:15348617-15348320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:37-341
               
               
               Cow position:chr2:972034-971746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):227, 17

               
               
               Conread position:37-343
               
               
               Cow position:chr2:43444834-43444518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 264

               
               
               Conread position:37-352
               
               
               Cow position:chr2:65036070-65036374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):29, 72

               
               
               Conread position:37-366
               
               
               Cow position:chr2:52484739-52485079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 60

               
               
               Conread position:37-378
               
               
               Cow position:chr2:44022584-44022923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):107, 16

               
               
               Conread position:37-382
               
               
               Cow position:chr2:12949941-12950291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 141

               
               
               Conread position:37-382
               
               
               Cow position:chr2:41248792-41248446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 88

               
               
               Conread position:37-383
               
               
               Cow position:chr2:26851389-26851042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 54

               
               
               Conread position:37-387
               
               
               Cow position:chr2:39590476-39590127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 20

               
               
               Conread position:38-197
               
               
               Cow position:chr2:17453458-17453304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:38-214
               
               
               Cow position:chr2:79245624-79245446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:38-230
               
               
               Cow position:chr2:1888454-1888637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:38-244
               
               
               Cow position:chr2:485799-485593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):14, 108

               
               
               Conread position:38-262
               
               
               Cow position:chr2:39642970-39642749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):18, 39

               
               
               Conread position:38-326
               
               
               Cow position:chr2:41462201-41462492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 109

               
               
               Conread position:38-382
               
               
               Cow position:chr2:54883689-54883345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):100, 57

               
               
               Conread position:38-383
               
               
               Cow position:chr2:6039235-6038886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):109, 15

               
               
               Conread position:38-384
               
               
               Cow position:chr2:12686573-12686909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):155, 35

               
               
               Conread position:38-384
               
               
               Cow position:chr2:13036343-13035992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):139, 15

               
               
               Conread position:38-384
               
               
               Cow position:chr2:21644224-21644572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):48, 107

               
               
               Conread position:38-384
               
               
               Cow position:chr2:30141602-30141260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):129, 42

               
               
               Conread position:39-247
               
               
               Cow position:chr2:21171822-21171618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:39-299
               
               
               Cow position:chr2:42978758-42979018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):115, 14

               
               
               Conread position:39-299
               
               
               Cow position:chr2:61561813-61562064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:199
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):115, 14

               
               
               Conread position:39-363
               
               
               Cow position:chr2:50449687-50450009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 114

               
               
               Conread position:39-366
               
               
               Cow position:chr2:69250450-69250775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):88, 13

               
               
               Conread position:39-378
               
               
               Cow position:chr2:33471779-33472100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):182, 14

               
               
               Conread position:39-386
               
               
               Cow position:chr2:23713100-23712759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 226

               
               
               Conread position:40-192
               
               
               Cow position:chr2:39456330-39456180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:40-232
               
               
               Cow position:chr2:39275000-39274811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):104, 12

               
               
               Conread position:40-238
               
               
               Cow position:chr2:69092937-69093126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):125, 17

               
               
               Conread position:40-272
               
               
               Cow position:chr2:46125918-46126147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 105

               
               
               Conread position:40-280
               
               
               Cow position:chr2:5604739-5604505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):223, 25

               
               
               Conread position:40-343
               
               
               Cow position:chr2:47090987-47090678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):18, 148

               
               
               Conread position:40-402
               
               
               Cow position:chr2:45642273-45642631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 52

               
               
               Conread position:40-413
               
               
               Cow position:chr2:25966681-25967044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):224, 76

               
               
               Conread position:41-247
               
               
               Cow position:chr2:11574032-11573822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:41-255
               
               
               Cow position:chr2:49862874-49862660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):108, 33

               
               
               Conread position:41-384
               
               
               Cow position:chr2:17940070-17940410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):103, 16

               
               
               Conread position:42-275
               
               
               Cow position:chr2:51099754-51099990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:42-383
               
               
               Cow position:chr2:75600928-75600602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 104

               
               
               Conread position:42-384
               
               
               Cow position:chr2:59592549-59592865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):140, 97

               
               
               Conread position:43-271
               
               
               Cow position:chr2:8139137-8138910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 124

               
               
               Conread position:43-325
               
               
               Cow position:chr2:83211315-83211032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):139, 21

               
               
               Conread position:43-378
               
               
               Cow position:chr2:33531729-33532068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):111, 10

               
               
               Conread position:43-378
               
               
               Cow position:chr2:36077582-36077235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):15, 145

               
               
               Conread position:43-384
               
               
               Cow position:chr2:76340432-76340782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):85, 21

               
               
               Conread position:44-267
               
               
               Cow position:chr2:46053689-46053463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):22, 9

               
               
               Conread position:45-227
               
               
               Cow position:chr2:70824022-70824198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:46-218
               
               
               Cow position:chr2:45895479-45895318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:46-328
               
               
               Cow position:chr2:44505775-44506062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:46-348
               
               
               Cow position:chr2:46120432-46120729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 11

               
               
               Conread position:46-382
               
               
               Cow position:chr2:37009621-37009295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):7, 82

               
               
               Conread position:46-383
               
               
               Cow position:chr2:32115277-32114954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:246
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):20, 47

               
               
               Conread position:46-383
               
               
               Cow position:chr2:76861237-76861584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:46-384
               
               
               Cow position:chr2:69419378-69419709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 11

               
               
               Conread position:47-214
               
               
               Cow position:chr2:51023992-51024153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:47-274
               
               
               Cow position:chr2:9543524-9543300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):217, 171

               
               
               Conread position:47-294
               
               
               Cow position:chr2:66149529-66149291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 58

               
               
               Conread position:47-317
               
               
               Cow position:chr2:43131309-43131044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):97, 6

               
               
               Conread position:47-343
               
               
               Cow position:chr2:47443484-47443178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):80, 28

               
               
               Conread position:47-378
               
               
               Cow position:chr2:70896261-70895916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):77, 249

               
               
               Conread position:47-382
               
               
               Cow position:chr2:841368-841042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):116, 17

               
               
               Conread position:47-384
               
               
               Cow position:chr2:9063479-9063151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 10

               
               
               Conread position:47-384
               
               
               Cow position:chr2:17328959-17328625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):22, 41

               
               
               Conread position:47-384
               
               
               Cow position:chr2:22371742-22372070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 76

               
               
               Conread position:47-384
               
               
               Cow position:chr2:71799869-71800209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:48-220
               
               
               Cow position:chr2:61681708-61681537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):99, 46

               
               
               Conread position:48-223
               
               
               Cow position:chr2:16751662-16751841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 132

               
               
               Conread position:48-237
               
               
               Cow position:chr2:63568922-63568734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):13, 97

               
               
               Conread position:48-238
               
               
               Cow position:chr2:80961750-80961943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:48-282
               
               
               Cow position:chr2:21073913-21074149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):129, 16

               
               
               Conread position:48-339
               
               
               Cow position:chr2:76758340-76758620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):214, 16

               
               
               Conread position:48-346
               
               
               Cow position:chr2:32088091-32087789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:48-356
               
               
               Cow position:chr2:37791282-37791591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):89, 16

               
               
               Conread position:48-368
               
               
               Cow position:chr2:71600638-71600311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):140, 17

               
               
               Conread position:48-373
               
               
               Cow position:chr2:387566-387886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):183, 15

               
               
               Conread position:48-377
               
               
               Cow position:chr2:27337563-27337890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):6, 187

               
               
               Conread position:48-384
               
               
               Cow position:chr2:7194420-7194079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):118, 59

               
               
               Conread position:48-384
               
               
               Cow position:chr2:13354891-13354552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):25, 16

               
               
               Conread position:48-384
               
               
               Cow position:chr2:14826489-14826166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 5

               
               
               Conread position:48-384
               
               
               Cow position:chr2:16428188-16428520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):22, 113

               
               
               Conread position:48-384
               
               
               Cow position:chr2:16515004-16514661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):78, 61

               
               
               Conread position:48-384
               
               
               Cow position:chr2:17805556-17805886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:241
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):107, 135

               
               
               Conread position:48-384
               
               
               Cow position:chr2:43624328-43624650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):156, 79

               
               
               Conread position:48-384
               
               
               Cow position:chr2:46033545-46033209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 16

               
               
               Conread position:48-384
               
               
               Cow position:chr2:65928629-65928961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):101, 9

               
               
               Conread position:49-272
               
               
               Cow position:chr2:2827957-2827731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:49-321
               
               
               Cow position:chr2:86490434-86490695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):116, 30

               
               
               Conread position:49-341
               
               
               Cow position:chr2:84480289-84480583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 254

               
               
               Conread position:49-348
               
               
               Cow position:chr2:58479480-58479763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):215, 42

               
               
               Conread position:49-351
               
               
               Cow position:chr2:1709178-1708882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):215, 78

               
               
               Conread position:49-378
               
               
               Cow position:chr2:65269478-65269807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):15, 130

               
               
               Conread position:49-383
               
               
               Cow position:chr2:21382638-21382975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 186

               
               
               Conread position:49-384
               
               
               Cow position:chr2:1658719-1658371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 54

               
               
               Conread position:49-384
               
               
               Cow position:chr2:13002007-13001683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 81

               
               
               Conread position:49-384
               
               
               Cow position:chr2:13369868-13369533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):97, 129

               
               
               Conread position:49-384
               
               
               Cow position:chr2:13580447-13580124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):47, 95

               
               
               Conread position:49-411
               
               
               Cow position:chr2:46942143-46942511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):40, 77

               
               
               Conread position:50-207
               
               
               Cow position:chr2:39187578-39187425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:50-216
               
               
               Cow position:chr2:73981839-73981677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:50-220
               
               
               Cow position:chr2:19842996-19842829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):16, 96

               
               
               Conread position:50-224
               
               
               Cow position:chr2:29930683-29930859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:50-230
               
               
               Cow position:chr2:2031800-2031980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):104, 14

               
               
               Conread position:50-231
               
               
               Cow position:chr2:22759764-22759948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 122

               
               
               Conread position:50-231
               
               
               Cow position:chr2:37058959-37059139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):99, 36

               
               
               Conread position:50-238
               
               
               Cow position:chr2:9936446-9936633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):119, 14

               
               
               Conread position:50-238
               
               
               Cow position:chr2:42897877-42897688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):86, 15

               
               
               Conread position:50-242
               
               
               Cow position:chr2:70449230-70449045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):67, 7

               
               
               Conread position:50-244
               
               
               Cow position:chr2:64465570-64465759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:50-246
               
               
               Cow position:chr2:75462532-75462343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:50-250
               
               
               Cow position:chr2:39480172-39479974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):98, 14

               
               
               Conread position:50-251
               
               
               Cow position:chr2:12889617-12889822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):82, 178

               
               
               Conread position:50-251
               
               
               Cow position:chr2:36124643-36124441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:50-252
               
               
               Cow position:chr2:55004493-55004296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):121, 91

               
               
               Conread position:50-255
               
               
               Cow position:chr2:16668144-16667943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:50-274
               
               
               Cow position:chr2:9725890-9726112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):85, 121

               
               
               Conread position:50-274
               
               
               Cow position:chr2:15219319-15219099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):214, 42

               
               
               Conread position:50-274
               
               
               Cow position:chr2:19320211-19319989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 37

               
               
               Conread position:50-282
               
               
               Cow position:chr2:38837304-38837539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):74, 124

               
               
               Conread position:50-282
               
               
               Cow position:chr2:63250202-63250427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):10, 47

               
               
               Conread position:50-298
               
               
               Cow position:chr2:30012551-30012801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):114, 136

               
               
               Conread position:50-301
               
               
               Cow position:chr2:15734632-15734380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):16, 230

               
               
               Conread position:50-302
               
               
               Cow position:chr2:16686746-16686510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):240, 14

               
               
               Conread position:50-331
               
               
               Cow position:chr2:8821452-8821162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):72, 7

               
               
               Conread position:50-331
               
               
               Cow position:chr2:39067706-39067434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 57

               
               
               Conread position:50-331
               
               
               Cow position:chr2:44065773-44065507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):214, 15

               
               
               Conread position:50-343
               
               
               Cow position:chr2:29801936-29802204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):212, 14

               
               
               Conread position:50-352
               
               
               Cow position:chr2:8843615-8843918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):86, 14

               
               
               Conread position:50-352
               
               
               Cow position:chr2:43474389-43474088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:50-352
               
               
               Cow position:chr2:47753385-47753706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):12, 144

               
               
               Conread position:50-361
               
               
               Cow position:chr2:18621623-18621307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):17, 70

               
               
               Conread position:50-373
               
               
               Cow position:chr2:19137681-19138005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 102

               
               
               Conread position:50-376
               
               
               Cow position:chr2:62247859-62247526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:50-377
               
               
               Cow position:chr2:56350703-56351031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):92, 7

               
               
               Conread position:50-378
               
               
               Cow position:chr2:7523907-7524251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:50-378
               
               
               Cow position:chr2:12682448-12682775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:50-378
               
               
               Cow position:chr2:29928272-29927936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):97, 137

               
               
               Conread position:50-378
               
               
               Cow position:chr2:64323447-64323126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):190, 78

               
               
               Conread position:50-378
               
               
               Cow position:chr2:82957890-82957563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:50-382
               
               
               Cow position:chr2:45624241-45623895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):76, 251

               
               
               Conread position:50-383
               
               
               Cow position:chr2:16839847-16839511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):106, 36

               
               
               Conread position:50-383
               
               
               Cow position:chr2:43577569-43577919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):78, 252

               
               
               Conread position:50-383
               
               
               Cow position:chr2:46746144-46745801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):81, 259

               
               
               Conread position:50-383
               
               
               Cow position:chr2:66959888-66959558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 137

               
               
               Conread position:50-384
               
               
               Cow position:chr2:6356155-6356507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):77, 258

               
               
               Conread position:50-384
               
               
               Cow position:chr2:7573303-7573627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):33, 91

               
               
               Conread position:50-384
               
               
               Cow position:chr2:28820582-28820240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):11, 218

               
               
               Conread position:50-384
               
               
               Cow position:chr2:29042106-29041760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:50-384
               
               
               Cow position:chr2:33553968-33554291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 15

               
               
               Conread position:50-384
               
               
               Cow position:chr2:40484294-40484644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:50-384
               
               
               Cow position:chr2:46312645-46312329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:50-384
               
               
               Cow position:chr2:69199116-69199438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):116, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr2:70674951-70674603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):17, 140

               
               
               Conread position:50-387
               
               
               Cow position:chr2:59992039-59992371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):97, 128

               
               
               Conread position:50-401
               
               
               Cow position:chr2:33262421-33262755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):214, 15

               
               
               Conread position:51-228
               
               
               Cow position:chr2:39483697-39483516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:51-230
               
               
               Cow position:chr2:16409682-16409503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):14, 28

               
               
               Conread position:51-241
               
               
               Cow position:chr2:37224279-37224090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:51-270
               
               
               Cow position:chr2:46317082-46316862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):105, 186

               
               
               Conread position:51-272
               
               
               Cow position:chr2:85460132-85459919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 41

               
               
               Conread position:51-378
               
               
               Cow position:chr2:26500731-26501049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):213, 6

               
               
               Conread position:51-384
               
               
               Cow position:chr2:38785393-38785727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):162, 76

               
               
               Conread position:51-384
               
               
               Cow position:chr2:44931047-44931389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):10, 130

               
               
               Conread position:51-385
               
               
               Cow position:chr2:45935759-45936082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):213, 54

               
               
               Conread position:51-468
               
               
               Cow position:chr2:33988098-33988520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):70, 225

               
               
               Conread position:52-246
               
               
               Cow position:chr2:47019052-47018860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:52-248
               
               
               Cow position:chr2:6952673-6952481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:52-249
               
               
               Cow position:chr2:12866158-12866361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):96, 12

               
               
               Conread position:52-257
               
               
               Cow position:chr2:28873099-28872899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:52-364
               
               
               Cow position:chr2:32431530-32431839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):115, 86

               
               
               Conread position:52-377
               
               
               Cow position:chr2:31749759-31750082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):97, 233

               
               
               Conread position:52-377
               
               
               Cow position:chr2:66460830-66461148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:52-378
               
               
               Cow position:chr2:69579468-69579795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):92, 125

               
               
               Conread position:52-382
               
               
               Cow position:chr2:62743802-62744128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 93

               
               
               Conread position:52-384
               
               
               Cow position:chr2:992360-992032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 77

               
               
               Conread position:52-384
               
               
               Cow position:chr2:29122091-29121762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 12

               
               
               Conread position:52-384
               
               
               Cow position:chr2:51594979-51594641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):106, 39

               
               
               Conread position:52-384
               
               
               Cow position:chr2:71624189-71624503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:52-384
               
               
               Cow position:chr2:74249014-74249347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):14, 137

               
               
               Conread position:53-224
               
               
               Cow position:chr2:3773119-3773290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:53-229
               
               
               Cow position:chr2:17942805-17942989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:53-249
               
               
               Cow position:chr2:51290147-51290346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:53-251
               
               
               Cow position:chr2:16481007-16481203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):101, 70

               
               
               Conread position:53-252
               
               
               Cow position:chr2:26694817-26694616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):91, 124

               
               
               Conread position:53-265
               
               
               Cow position:chr2:29394798-29395013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:53-272
               
               
               Cow position:chr2:81481052-81480838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):124, 99

               
               
               Conread position:53-273
               
               
               Cow position:chr2:37097695-37097910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:53-283
               
               
               Cow position:chr2:50913806-50914035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):11, 181

               
               
               Conread position:53-289
               
               
               Cow position:chr2:40373200-40373427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:53-291
               
               
               Cow position:chr2:44198087-44197850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):86, 101

               
               
               Conread position:53-294
               
               
               Cow position:chr2:16889850-16890086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):211, 75

               
               
               Conread position:53-321
               
               
               Cow position:chr2:68292977-68292708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:53-326
               
               
               Cow position:chr2:41382197-41381937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):211, 101

               
               
               Conread position:53-328
               
               
               Cow position:chr2:22042762-22042468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):13, 199

               
               
               Conread position:53-332
               
               
               Cow position:chr2:38646942-38647229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):68, 179

               
               
               Conread position:53-339
               
               
               Cow position:chr2:22677402-22677114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):101, 239

               
               
               Conread position:53-380
               
               
               Cow position:chr2:30351497-30351820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):89, 74

               
               
               Conread position:53-383
               
               
               Cow position:chr2:76562329-76561990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):91, 151

               
               
               Conread position:53-384
               
               
               Cow position:chr2:79754-80083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 92

               
               
               Conread position:53-384
               
               
               Cow position:chr2:13856612-13856946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:53-384
               
               
               Cow position:chr2:24594069-24593748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):13, 90

               
               
               Conread position:53-384
               
               
               Cow position:chr2:35664919-35664586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):91, 20

               
               
               Conread position:53-384
               
               
               Cow position:chr2:37920555-37920904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):7, 63

               
               
               Conread position:53-384
               
               
               Cow position:chr2:38362173-38362491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 38

               
               
               Conread position:53-384
               
               
               Cow position:chr2:42608272-42607943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):246, 99

               
               
               Conread position:53-384
               
               
               Cow position:chr2:44051516-44051187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 95

               
               
               Conread position:53-384
               
               
               Cow position:chr2:46262643-46262325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):190, 20

               
               
               Conread position:53-384
               
               
               Cow position:chr2:46331272-46330937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:53-384
               
               
               Cow position:chr2:51799131-51799445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):212, 74

               
               
               Conread position:53-384
               
               
               Cow position:chr2:58687141-58686814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):44, 231

               
               
               Conread position:53-385
               
               
               Cow position:chr2:46227672-46227341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 56

               
               
               Conread position:53-397
               
               
               Cow position:chr2:71437170-71437514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 99

               
               
               Conread position:53-401
               
               
               Cow position:chr2:39514245-39513885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:251
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):74, 60

               
               
               Conread position:54-265
               
               
               Cow position:chr2:41008088-41008296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):90, 100

               
               
               Conread position:54-271
               
               
               Cow position:chr2:30954387-30954607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):81, 35

               
               
               Conread position:54-346
               
               
               Cow position:chr2:994166-994450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:217
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):210, 37

               
               
               Conread position:54-378
               
               
               Cow position:chr2:6539014-6539352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):75, 113

               
               
               Conread position:54-382
               
               
               Cow position:chr2:18857951-18858265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):210, 67

               
               
               Conread position:54-382
               
               
               Cow position:chr2:34749786-34750101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):132, 26

               
               
               Conread position:54-383
               
               
               Cow position:chr2:19494420-19494088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 97

               
               
               Conread position:54-383
               
               
               Cow position:chr2:82580730-82581053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 73

               
               
               Conread position:54-384
               
               
               Cow position:chr2:41087899-41088237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 74

               
               
               Conread position:54-384
               
               
               Cow position:chr2:77211980-77212300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:54-385
               
               
               Cow position:chr2:55632977-55632654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):100, 51

               
               
               Conread position:54-386
               
               
               Cow position:chr2:21380198-21380519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):212, 93

               
               
               Conread position:55-247
               
               
               Cow position:chr2:41422994-41422809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):109, 76

               
               
               Conread position:55-312
               
               
               Cow position:chr2:50905496-50905763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:55-384
               
               
               Cow position:chr2:16481653-16481983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):99, 121

               
               
               Conread position:56-235
               
               
               Cow position:chr2:46015770-46015945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:56-238
               
               
               Cow position:chr2:1364393-1364576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):90, 137

               
               
               Conread position:56-272
               
               
               Cow position:chr2:67480191-67479962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:56-316
               
               
               Cow position:chr2:21410434-21410161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:56-339
               
               
               Cow position:chr2:46967994-46968269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):210, 36

               
               
               Conread position:56-357
               
               
               Cow position:chr2:46057808-46058106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):208, 89

               
               
               Conread position:56-378
               
               
               Cow position:chr2:40728563-40728237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):76, 235

               
               
               Conread position:56-383
               
               
               Cow position:chr2:20947572-20947249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:56-383
               
               
               Cow position:chr2:43995134-43994816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 35

               
               
               Conread position:56-384
               
               
               Cow position:chr2:14218858-14218525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):98, 134

               
               
               Conread position:56-384
               
               
               Cow position:chr2:17966838-17967152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 47

               
               
               Conread position:56-384
               
               
               Cow position:chr2:31784132-31783814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 89

               
               
               Conread position:56-387
               
               
               Cow position:chr2:41452437-41452108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:57-208
               
               
               Cow position:chr2:77140379-77140527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:57-217
               
               
               Cow position:chr2:16412412-16412568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:57-237
               
               
               Cow position:chr2:11435487-11435310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:57-238
               
               
               Cow position:chr2:48784857-48785042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):150, 111

               
               
               Conread position:57-247
               
               
               Cow position:chr2:68239404-68239227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:57-248
               
               
               Cow position:chr2:80848286-80848096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):89, 47

               
               
               Conread position:57-253
               
               
               Cow position:chr2:37891280-37891483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:57-255
               
               
               Cow position:chr2:38162597-38162793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 71

               
               
               Conread position:57-275
               
               
               Cow position:chr2:37619707-37619929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):63, 95

               
               
               Conread position:57-282
               
               
               Cow position:chr2:1335486-1335717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:57-282
               
               
               Cow position:chr2:43591171-43591395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):164, 88

               
               
               Conread position:57-282
               
               
               Cow position:chr2:46164299-46164522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):207, 88

               
               
               Conread position:57-321
               
               
               Cow position:chr2:46162155-46161894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 58

               
               
               Conread position:57-332
               
               
               Cow position:chr2:13867927-13867656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):91, 110

               
               
               Conread position:57-332
               
               
               Cow position:chr2:14634386-14634116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):206, 89

               
               
               Conread position:57-342
               
               
               Cow position:chr2:57733630-57733348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 70

               
               
               Conread position:57-343
               
               
               Cow position:chr2:70908130-70908403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):208, 70

               
               
               Conread position:57-344
               
               
               Cow position:chr2:13684893-13684614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 89

               
               
               Conread position:57-378
               
               
               Cow position:chr2:46135428-46135100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):80, 103

               
               
               Conread position:57-378
               
               
               Cow position:chr2:76110595-76110280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):248, 84

               
               
               Conread position:57-380
               
               
               Cow position:chr2:61097099-61096783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):200, 88

               
               
               Conread position:57-382
               
               
               Cow position:chr2:15568002-15568304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):209, 89

               
               
               Conread position:57-383
               
               
               Cow position:chr2:18997919-18997603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:57-384
               
               
               Cow position:chr2:2673733-2673403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):205, 99

               
               
               Conread position:57-384
               
               
               Cow position:chr2:15250370-15250058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):207, 64

               
               
               Conread position:57-384
               
               
               Cow position:chr2:33250885-33251202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):92, 120

               
               
               Conread position:57-384
               
               
               Cow position:chr2:38965812-38965500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 34

               
               
               Conread position:57-384
               
               
               Cow position:chr2:41148076-41147740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:57-384
               
               
               Cow position:chr2:45478399-45478708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):202, 85

               
               
               Conread position:57-384
               
               
               Cow position:chr2:46222806-46223090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):207, 70

               
               
               Conread position:57-384
               
               
               Cow position:chr2:58153906-58153582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 88

               
               
               Conread position:57-384
               
               
               Cow position:chr2:76968961-76969296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):77, 230

               
               
               Conread position:57-384
               
               
               Cow position:chr2:85926268-85925935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 247

               
               
               Conread position:57-394
               
               
               Cow position:chr2:827417-827749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 34

               
               
               Conread position:58-212
               
               
               Cow position:chr2:1036185-1036340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:58-228
               
               
               Cow position:chr2:64562735-64562906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:58-272
               
               
               Cow position:chr2:16847386-16847172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):63, 162

               
               
               Conread position:58-274
               
               
               Cow position:chr2:49716884-49717102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):86, 119

               
               
               Conread position:58-283
               
               
               Cow position:chr2:22370746-22370966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 40

               
               
               Conread position:58-321
               
               
               Cow position:chr2:53500844-53501096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):198, 69

               
               
               Conread position:58-348
               
               
               Cow position:chr2:21003370-21003084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:211
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):65, 34

               
               
               Conread position:58-348
               
               
               Cow position:chr2:24530565-24530286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):206, 68

               
               
               Conread position:58-368
               
               
               Cow position:chr2:55496092-55496393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:58-369
               
               
               Cow position:chr2:60091234-60091536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 72

               
               
               Conread position:58-382
               
               
               Cow position:chr2:45565903-45565584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):109, 55

               
               
               Conread position:58-384
               
               
               Cow position:chr2:11599623-11599315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 87

               
               
               Conread position:58-384
               
               
               Cow position:chr2:13001117-13000795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 102

               
               
               Conread position:58-384
               
               
               Cow position:chr2:39068481-39068183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:58-384
               
               
               Cow position:chr2:39584633-39584331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):205, 19

               
               
               Conread position:58-384
               
               
               Cow position:chr2:42255632-42255313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):201, 68

               
               
               Conread position:58-412
               
               
               Cow position:chr2:16514057-16513710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):88, 113

               
               
               Conread position:59-174
               
               
               Cow position:chr2:1358558-1358671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:59-204
               
               
               Cow position:chr2:1777670-1777818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:59-216
               
               
               Cow position:chr2:27599301-27599454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):112, 36

               
               
               Conread position:59-225
               
               
               Cow position:chr2:84343947-84344115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:59-227
               
               
               Cow position:chr2:64306969-64306810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:59-229
               
               
               Cow position:chr2:68328651-68328821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-230
               
               
               Cow position:chr2:43139454-43139625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):84, 160

               
               
               Conread position:59-236
               
               
               Cow position:chr2:78256491-78256315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):106, 64

               
               
               Conread position:59-241
               
               
               Cow position:chr2:26574958-26574780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:59-242
               
               
               Cow position:chr2:81244115-81243930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 119

               
               
               Conread position:59-251
               
               
               Cow position:chr2:21950173-21949985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):14, 28

               
               
               Conread position:59-251
               
               
               Cow position:chr2:54931640-54931829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):88, 36

               
               
               Conread position:59-255
               
               
               Cow position:chr2:65554601-65554798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 50

               
               
               Conread position:59-262
               
               
               Cow position:chr2:14884441-14884240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):70, 38

               
               
               Conread position:59-267
               
               
               Cow position:chr2:72315611-72315819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):106, 110

               
               
               Conread position:59-273
               
               
               Cow position:chr2:1476609-1476397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:59-282
               
               
               Cow position:chr2:53491260-53491473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):108, 33

               
               
               Conread position:59-286
               
               
               Cow position:chr2:19058353-19058127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):156, 68

               
               
               Conread position:59-289
               
               
               Cow position:chr2:44620789-44620557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 127

               
               
               Conread position:59-326
               
               
               Cow position:chr2:8083799-8083525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):87, 39

               
               
               Conread position:59-328
               
               
               Cow position:chr2:80177397-80177656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):205, 65

               
               
               Conread position:59-331
               
               
               Cow position:chr2:50433056-50432780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):127, 67

               
               
               Conread position:59-343
               
               
               Cow position:chr2:38662495-38662771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):211, 173

               
               
               Conread position:59-354
               
               
               Cow position:chr2:61815602-61815890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):205, 8

               
               
               Conread position:59-363
               
               
               Cow position:chr2:49430017-49430325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):95, 114

               
               
               Conread position:59-367
               
               
               Cow position:chr2:32264193-32264493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):95, 36

               
               
               Conread position:59-368
               
               
               Cow position:chr2:72003748-72004051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):75, 93

               
               
               Conread position:59-377
               
               
               Cow position:chr2:24602602-24602284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):88, 98

               
               
               Conread position:59-377
               
               
               Cow position:chr2:40410973-40411285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):97, 130

               
               
               Conread position:59-377
               
               
               Cow position:chr2:46204721-46204404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):14, 131

               
               
               Conread position:59-378
               
               
               Cow position:chr2:19155985-19156300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):200, 112

               
               
               Conread position:59-378
               
               
               Cow position:chr2:38886441-38886753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:59-379
               
               
               Cow position:chr2:49428585-49428264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):85, 131

               
               
               Conread position:59-379
               
               
               Cow position:chr2:68190446-68190759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:59-382
               
               
               Cow position:chr2:45784950-45784610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):69, 27

               
               
               Conread position:59-383
               
               
               Cow position:chr2:67745450-67745131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):85, 162

               
               
               Conread position:59-384
               
               
               Cow position:chr2:32660382-32660051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:59-384
               
               
               Cow position:chr2:46242380-46242711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 108

               
               
               Conread position:59-384
               
               
               Cow position:chr2:55526573-55526880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):95, 82

               
               
               Conread position:59-384
               
               
               Cow position:chr2:59886896-59886579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):204, 91

               
               
               Conread position:59-394
               
               
               Cow position:chr2:48634851-48635178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):107, 48

               
               
               Conread position:60-195
               
               
               Cow position:chr2:34810953-34811086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:60-237
               
               
               Cow position:chr2:21327409-21327238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):37, 86

               
               
               Conread position:60-238
               
               
               Cow position:chr2:41651193-41651375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:60-241
               
               
               Cow position:chr2:12873607-12873431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):99, 67

               
               
               Conread position:60-255
               
               
               Cow position:chr2:4207369-4207562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:60-282
               
               
               Cow position:chr2:40703471-40703688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 45

               
               
               Conread position:60-282
               
               
               Cow position:chr2:46351583-46351804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):206, 84

               
               
               Conread position:60-301
               
               
               Cow position:chr2:62271396-62271624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):202, 66

               
               
               Conread position:60-314
               
               
               Cow position:chr2:15872129-15871884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):202, 28

               
               
               Conread position:60-322
               
               
               Cow position:chr2:82116286-82116028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):203, 81

               
               
               Conread position:60-329
               
               
               Cow position:chr2:13672715-13672456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 79

               
               
               Conread position:60-332
               
               
               Cow position:chr2:54009111-54009396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):70, 66

               
               
               Conread position:60-373
               
               
               Cow position:chr2:49467829-49467516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):91, 32

               
               
               Conread position:60-379
               
               
               Cow position:chr2:40489002-40488698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):204, 32

               
               
               Conread position:60-379
               
               
               Cow position:chr2:46342950-46343254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 92

               
               
               Conread position:60-383
               
               
               Cow position:chr2:11657089-11656774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 83

               
               
               Conread position:60-384
               
               
               Cow position:chr2:6160150-6160453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:60-384
               
               
               Cow position:chr2:17114542-17114855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 31

               
               
               Conread position:60-384
               
               
               Cow position:chr2:19328731-19328422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):204, 59

               
               
               Conread position:60-384
               
               
               Cow position:chr2:45619197-45619518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):204, 85

               
               
               Conread position:60-384
               
               
               Cow position:chr2:46129966-46130272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 31

               
               
               Conread position:60-384
               
               
               Cow position:chr2:46136972-46137278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:241
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):204, 82

               
               
               Conread position:60-384
               
               
               Cow position:chr2:47047553-47047876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):24, 128

               
               
               Conread position:60-384
               
               
               Cow position:chr2:60462631-60462943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):245, 14

               
               
               Conread position:60-384
               
               
               Cow position:chr2:60468010-60468322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):245, 14

               
               
               Conread position:60-384
               
               
               Cow position:chr2:75227404-75227078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:60-384
               
               
               Cow position:chr2:78249939-78249614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 161

               
               
               Conread position:61-238
               
               
               Cow position:chr2:46378593-46378770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):83, 91

               
               
               Conread position:61-244
               
               
               Cow position:chr2:44215699-44215520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:61-247
               
               
               Cow position:chr2:45521833-45522021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):95, 126

               
               
               Conread position:61-255
               
               
               Cow position:chr2:72342654-72342851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):53, 127

               
               
               Conread position:61-269
               
               
               Cow position:chr2:85275300-85275504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):182, 53

               
               
               Conread position:61-359
               
               
               Cow position:chr2:67576301-67575999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):83, 113

               
               
               Conread position:61-366
               
               
               Cow position:chr2:24859203-24858903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):183, 59

               
               
               Conread position:61-378
               
               
               Cow position:chr2:24596657-24596335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):88, 131

               
               
               Conread position:61-382
               
               
               Cow position:chr2:39334675-39334986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 78

               
               
               Conread position:61-384
               
               
               Cow position:chr2:60691079-60690762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):129, 30

               
               
               Conread position:62-251
               
               
               Cow position:chr2:19164771-19164957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:62-328
               
               
               Cow position:chr2:38640516-38640247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):202, 80

               
               
               Conread position:62-331
               
               
               Cow position:chr2:55872321-55872589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):87, 116

               
               
               Conread position:62-348
               
               
               Cow position:chr2:76313668-76313954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:62-373
               
               
               Cow position:chr2:68970943-68970627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):75, 117

               
               
               Conread position:62-374
               
               
               Cow position:chr2:38658599-38658895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):221, 31

               
               
               Conread position:62-383
               
               
               Cow position:chr2:45574811-45575116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):105, 60

               
               
               Conread position:62-384
               
               
               Cow position:chr2:15058864-15059183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):87, 114

               
               
               Conread position:62-385
               
               
               Cow position:chr2:44168261-44167951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):203, 39

               
               
               Conread position:62-386
               
               
               Cow position:chr2:6323658-6323989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):61, 136

               
               
               Conread position:63-238
               
               
               Cow position:chr2:47160145-47159970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):91, 42

               
               
               Conread position:63-352
               
               
               Cow position:chr2:69779970-69780269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):86, 207

               
               
               Conread position:63-388
               
               
               Cow position:chr2:15063074-15063397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):196, 20

               
               
               Conread position:64-172
               
               
               Cow position:chr2:31223507-31223616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:64-260
               
               
               Cow position:chr2:13695042-13695240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):65, 54

               
               
               Conread position:64-274
               
               
               Cow position:chr2:71486971-71486764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):200, 76

               
               
               Conread position:64-367
               
               
               Cow position:chr2:777488-777793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):80, 159

               
               
               Conread position:64-378
               
               
               Cow position:chr2:73354002-73353676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):64, 176

               
               
               Conread position:64-383
               
               
               Cow position:chr2:16505274-16505597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):66, 30

               
               
               Conread position:64-384
               
               
               Cow position:chr2:24007612-24007300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:64-384
               
               
               Cow position:chr2:42801231-42800922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 64

               
               
               Conread position:64-385
               
               
               Cow position:chr2:15674725-15674422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):200, 64

               
               
               Conread position:64-412
               
               
               Cow position:chr2:80865677-80866006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:250
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):200, 54

               
               
               Conread position:65-366
               
               
               Cow position:chr2:44007622-44007314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):69, 11

               
               
               Conread position:65-383
               
               
               Cow position:chr2:60315157-60315466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):199, 62

               
               
               Conread position:65-384
               
               
               Cow position:chr2:17841796-17842099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):32, 110

               
               
               Conread position:68-299
               
               
               Cow position:chr2:39750308-39750075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):72, 139

               
               
               Conread position:68-343
               
               
               Cow position:chr2:61962272-61962538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):67, 83

               
               
               Conread position:68-343
               
               
               Cow position:chr2:70847071-70847344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):98, 76

               
               
               Conread position:68-369
               
               
               Cow position:chr2:1745526-1745835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):120, 10

               
               
               Conread position:68-384
               
               
               Cow position:chr2:15298726-15298413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 59

               
               
               Conread position:68-384
               
               
               Cow position:chr2:44170749-44170437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 78

               
               
               Conread position:68-384
               
               
               Cow position:chr2:46202459-46202148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 104

               
               
               Conread position:69-303
               
               
               Cow position:chr2:1317691-1317926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):80, 120

               
               
               Conread position:69-378
               
               
               Cow position:chr2:49608782-49608473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):191, 89

               
               
               Conread position:69-384
               
               
               Cow position:chr2:39815105-39815406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):123, 59

               
               
               Conread position:69-384
               
               
               Cow position:chr2:47065303-47064992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):77, 162

               
               
               Conread position:69-384
               
               
               Cow position:chr2:72528153-72527833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):62, 116

               
               
               Conread position:69-411
               
               
               Cow position:chr2:58868969-58869311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):75, 120

               
               
               Conread position:71-273
               
               
               Cow position:chr2:78360599-78360396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):59, 105

               
               
               Conread position:72-213
               
               
               Cow position:chr2:14313605-14313463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:72-275
               
               
               Cow position:chr2:16669658-16669453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 98

               
               
               Conread position:72-280
               
               
               Cow position:chr2:7453168-7453368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:72-296
               
               
               Cow position:chr2:17492331-17492553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):185, 80

               
               
               Conread position:72-318
               
               
               Cow position:chr2:35988430-35988674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:72-378
               
               
               Cow position:chr2:28257664-28257346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):63, 116

               
               
               Conread position:72-383
               
               
               Cow position:chr2:59819624-59819925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):194, 57

               
               
               Conread position:72-383
               
               
               Cow position:chr2:65932156-65931842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:72-384
               
               
               Cow position:chr2:32350741-32351049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):82, 104

               
               
               Conread position:72-384
               
               
               Cow position:chr2:45542214-45542518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 69

               
               
               Conread position:72-384
               
               
               Cow position:chr2:57939874-57939563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):42, 250

               
               
               Conread position:72-384
               
               
               Cow position:chr2:64212365-64212681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 79

               
               
               Conread position:72-384
               
               
               Cow position:chr2:69676340-69676658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):82, 104

               
               
               Conread position:72-384
               
               
               Cow position:chr2:71922411-71922106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 54

               
               
               Conread position:72-384
               
               
               Cow position:chr2:77467271-77467567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):192, 22

               
               
               Conread position:73-258
               
               
               Cow position:chr2:1141663-1141486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:73-294
               
               
               Cow position:chr2:37615131-37614906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):76, 114

               
               
               Conread position:73-357
               
               
               Cow position:chr2:10440015-10439736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):191, 13

               
               
               Conread position:73-377
               
               
               Cow position:chr2:67386284-67386595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:73-378
               
               
               Cow position:chr2:2094802-2094486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):79, 236

               
               
               Conread position:73-384
               
               
               Cow position:chr2:43835373-43835683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):84, 74

               
               
               Conread position:73-384
               
               
               Cow position:chr2:77157160-77157471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 98

               
               
               Conread position:74-237
               
               
               Cow position:chr2:13328821-13328980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:74-251
               
               
               Cow position:chr2:56338850-56339021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:74-316
               
               
               Cow position:chr2:65830152-65830389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):185, 68

               
               
               Conread position:74-331
               
               
               Cow position:chr2:63074678-63074930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):190, 48

               
               
               Conread position:74-348
               
               
               Cow position:chr2:69350382-69350655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 67

               
               
               Conread position:74-366
               
               
               Cow position:chr2:76762406-76762111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 121

               
               
               Conread position:74-379
               
               
               Cow position:chr2:73359925-73360223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 188

               
               
               Conread position:74-380
               
               
               Cow position:chr2:35948495-35948800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 72

               
               
               Conread position:76-255
               
               
               Cow position:chr2:61480775-61480594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:79-368
               
               
               Cow position:chr2:50353069-50352781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):185, 38

               
               
               Conread position:79-383
               
               
               Cow position:chr2:1762971-1762674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 9

               
               
               Conread position:79-383
               
               
               Cow position:chr2:36575916-36575618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):77, 49

               
               
               Conread position:80-382
               
               
               Cow position:chr2:56828381-56828689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 71

               
               
               Conread position:80-384
               
               
               Cow position:chr2:65902205-65901904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):160, 81

               
               
               Conread position:80-384
               
               
               Cow position:chr2:83410678-83410387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):88, 14

               
               
               Conread position:81-257
               
               
               Cow position:chr2:11217977-11217796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:82-384
               
               
               Cow position:chr2:13582762-13582459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):30, 70

               
               
               Conread position:82-384
               
               
               Cow position:chr2:50566115-50565803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):65, 113

               
               
               Conread position:83-371
               
               
               Cow position:chr2:60616304-60616596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):66, 106

               
               
               Conread position:86-261
               
               
               Cow position:chr2:81493426-81493597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:86-272
               
               
               Cow position:chr2:46014943-46014754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:88-337
               
               
               Cow position:chr2:39513644-39513390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):66, 21

               
               
               Conread position:88-384
               
               
               Cow position:chr2:45535637-45535342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 56

               
               
               Conread position:89-384
               
               
               Cow position:chr2:10319779-10320074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 88

               
               
               Conread position:89-384
               
               
               Cow position:chr2:39281369-39281073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 71

               
               
               Conread position:90-220
               
               
               Cow position:chr2:48199265-48199393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:92-232
               
               
               Cow position:chr2:65988265-65988127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:92-373
               
               
               Cow position:chr2:62200927-62200643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 98

               
               
               Conread position:95-262
               
               
               Cow position:chr2:35208074-35207913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):148, 32

               
               
               Conread position:95-309
               
               
               Cow position:chr2:73129316-73129099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):59, 192

               
               
               Conread position:95-384
               
               
               Cow position:chr2:15329538-15329270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):166, 32

               
               
               Conread position:95-384
               
               
               Cow position:chr2:15597313-15597596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):52, 17

               
               
               Conread position:95-384
               
               
               Cow position:chr2:39501201-39500903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):145, 44

               
               
               Conread position:96-384
               
               
               Cow position:chr2:54971340-54971057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):144, 43

               
               
               Conread position:97-265
               
               
               Cow position:chr2:24722105-24722275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:97-383
               
               
               Cow position:chr2:43790263-43789981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 54

               
               
               Conread position:98-376
               
               
               Cow position:chr2:4016689-4016954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):59, 43

               
               
               Conread position:98-378
               
               
               Cow position:chr2:20900298-20900579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):30, 88

               
               
               Conread position:98-384
               
               
               Cow position:chr2:1210607-1210891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):44, 24

               
               
               Conread position:98-384
               
               
               Cow position:chr2:10655703-10655975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):166, 30

               
               
               Conread position:98-385
               
               
               Cow position:chr2:66480029-66480313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):74, 30

               
               
               Conread position:99-379
               
               
               Cow position:chr2:53430879-53430610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):29, 85

               
               
               Conread position:104-384
               
               
               Cow position:chr2:23120615-23120885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):177, 37

               
               
               Conread position:105-351
               
               
               Cow position:chr2:68870847-68870604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 128

               
               
               Conread position:105-352
               
               
               Cow position:chr2:84498102-84497846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):49, 77

               
               
               Conread position:105-394
               
               
               Cow position:chr2:192311-192600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:107-247
               
               
               Cow position:chr2:46143279-46143143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:110-344
               
               
               Cow position:chr2:29860151-29859927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):195, 42

               
               
               Conread position:110-385
               
               
               Cow position:chr2:30113175-30112891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):18, 85

               
               
               Conread position:125-384
               
               
               Cow position:chr2:32402836-32403096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):139, 16

               
               
               Conread position:127-382
               
               
               Cow position:chr2:44222958-44222701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 164

               
               
               Conread position:128-291
               
               
               Cow position:chr2:64773519-64773354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:128-346
               
               
               Cow position:chr2:30911452-30911236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-348
               
               
               Cow position:chr2:45721136-45721353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-376
               
               
               Cow position:chr2:9687439-9687686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):37, 19

               
               
               Conread position:128-378
               
               
               Cow position:chr2:7383558-7383796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:128-381
               
               
               Cow position:chr2:69823722-69823468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):93, 10

               
               
               Conread position:128-383
               
               
               Cow position:chr2:47115786-47116037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):136, 157

               
               
               Conread position:128-383
               
               
               Cow position:chr2:47645177-47644931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):65, 19

               
               
               Conread position:128-384
               
               
               Cow position:chr2:5130322-5130574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):45, 10

               
               
               Conread position:128-384
               
               
               Cow position:chr2:9369788-9370037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):84, 62

               
               
               Conread position:128-384
               
               
               Cow position:chr2:36424154-36423889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):135, 108

               
               
               Conread position:128-384
               
               
               Cow position:chr2:39598096-39597840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):16, 38

               
               
               Conread position:128-384
               
               
               Cow position:chr2:45439565-45439319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 19

               
               
               Conread position:128-384
               
               
               Cow position:chr2:46909303-46909557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 54

               
               
               Conread position:128-384
               
               
               Cow position:chr2:74260589-74260333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 66

               
               
               Conread position:128-397
               
               
               Cow position:chr2:39263618-39263356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):135, 28

               
               
               Conread position:129-332
               
               
               Cow position:chr2:46383334-46383536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):137, 154

               
               
               Conread position:129-344
               
               
               Cow position:chr2:35136091-35135874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):26, 209

               
               
               Conread position:129-347
               
               
               Cow position:chr2:27180224-27179998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):57, 73

               
               
               Conread position:129-378
               
               
               Cow position:chr2:44025507-44025258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:129-382
               
               
               Cow position:chr2:1638734-1638481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 22

               
               
               Conread position:129-384
               
               
               Cow position:chr2:39237545-39237295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 70

               
               
               Conread position:129-384
               
               
               Cow position:chr2:44191609-44191361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:130-384
               
               
               Cow position:chr2:44482524-44482770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):136, 57

               
               
               Conread position:131-268
               
               
               Cow position:chr2:66094863-66095002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:131-294
               
               
               Cow position:chr2:56325431-56325597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):79, 99

               
               
               Conread position:131-300
               
               
               Cow position:chr2:29214184-29214353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):133, 89

               
               
               Conread position:131-330
               
               
               Cow position:chr2:52409166-52409367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 159

               
               
               Conread position:131-343
               
               
               Cow position:chr2:72309881-72310087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):133, 146

               
               
               Conread position:131-353
               
               
               Cow position:chr2:48130751-48130529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 50

               
               
               Conread position:131-367
               
               
               Cow position:chr2:39798372-39798133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):133, 171

               
               
               Conread position:131-367
               
               
               Cow position:chr2:77282152-77281914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:131-377
               
               
               Cow position:chr2:40402897-40403140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):133, 198

               
               
               Conread position:131-378
               
               
               Cow position:chr2:70781221-70780980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):58, 92

               
               
               Conread position:131-383
               
               
               Cow position:chr2:44081565-44081314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):139, 20

               
               
               Conread position:131-383
               
               
               Cow position:chr2:54810726-54810976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-383
               
               
               Cow position:chr2:68487876-68488127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:131-383
               
               
               Cow position:chr2:70704388-70704133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:131-384
               
               
               Cow position:chr2:41955015-41954760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):133, 49

               
               
               Conread position:131-384
               
               
               Cow position:chr2:69747486-69747742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:131-384
               
               
               Cow position:chr2:72183363-72183610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-384
               
               
               Cow position:chr2:81927977-81927731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):138, 86

               
               
               Conread position:131-384
               
               
               Cow position:chr2:83234024-83233766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:131-384
               
               
               Cow position:chr2:85339327-85339582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):45, 211

               
               
               Conread position:131-397
               
               
               Cow position:chr2:24434150-24434410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:199
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):164, 201

               
               
               Conread position:132-315
               
               
               Cow position:chr2:83184283-83184097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:132-320
               
               
               Cow position:chr2:40880197-40880010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):132, 89

               
               
               Conread position:132-324
               
               
               Cow position:chr2:55817870-55817673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:132-378
               
               
               Cow position:chr2:47073315-47073079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):132, 5

               
               
               Conread position:132-379
               
               
               Cow position:chr2:55063008-55062768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):19, 80

               
               
               Conread position:132-380
               
               
               Cow position:chr2:12558402-12558647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):22, 30

               
               
               Conread position:132-384
               
               
               Cow position:chr2:25597370-25597618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):164, 14

               
               
               Conread position:132-384
               
               
               Cow position:chr2:42927322-42927570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):132, 62

               
               
               Conread position:132-384
               
               
               Cow position:chr2:47624278-47624524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):132, 94

               
               
               Conread position:132-384
               
               
               Cow position:chr2:53851563-53851313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 20

               
               
               Conread position:133-355
               
               
               Cow position:chr2:47015210-47015429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):132, 14

               
               
               Conread position:133-383
               
               
               Cow position:chr2:42293376-42293129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):131, 14

               
               
               Conread position:133-384
               
               
               Cow position:chr2:19286955-19287200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):131, 14

               
               
               Conread position:133-384
               
               
               Cow position:chr2:41185186-41184938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):100, 179

               
               
               Conread position:133-384
               
               
               Cow position:chr2:59952733-59952972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):131, 23

               
               
               Conread position:133-384
               
               
               Cow position:chr2:72407371-72407614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):237, 53

               
               
               Conread position:133-384
               
               
               Cow position:chr2:81388816-81388569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):131, 19

               
               
               Conread position:133-386
               
               
               Cow position:chr2:61421042-61421292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):131, 19

               
               
               Conread position:134-384
               
               
               Cow position:chr2:48863866-48864103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:135-378
               
               
               Cow position:chr2:30642537-30642776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):128, 150

               
               
               Conread position:135-384
               
               
               Cow position:chr2:6901902-6901655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):127, 104

               
               
               Conread position:135-384
               
               
               Cow position:chr2:62644718-62644465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):58, 167

               
               
               Conread position:135-384
               
               
               Cow position:chr2:80963525-80963770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):129, 16

               
               
               Conread position:136-248
               
               
               Cow position:chr2:78641374-78641265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:136-351
               
               
               Cow position:chr2:40466758-40466545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):128, 16

               
               
               Conread position:137-384
               
               
               Cow position:chr2:46247339-46247582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):130, 15

               
               
               Conread position:138-368
               
               
               Cow position:chr2:43123462-43123231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):126, 168

               
               
               Conread position:141-382
               
               
               Cow position:chr2:46374825-46375051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):123, 13

               
               
               Conread position:142-384
               
               
               Cow position:chr2:25448448-25448207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):18, 140

               
               
               Conread position:144-382
               
               
               Cow position:chr2:82262258-82262500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 45

               
               
               Conread position:145-377
               
               
               Cow position:chr2:28303435-28303209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):119, 140

               
               
               Conread position:145-384
               
               
               Cow position:chr2:70495384-70495150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):161, 37

               
               
               Conread position:146-326
               
               
               Cow position:chr2:59427564-59427382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):118, 101

               
               
               Conread position:146-365
               
               
               Cow position:chr2:46971239-46971015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 35

               
               
               Conread position:146-368
               
               
               Cow position:chr2:46230648-46230867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):157, 123

               
               
               Conread position:146-378
               
               
               Cow position:chr2:38273664-38273428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):118, 36

               
               
               Conread position:146-378
               
               
               Cow position:chr2:45141528-45141292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):118, 99

               
               
               Conread position:146-384
               
               
               Cow position:chr2:20362540-20362767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):89, 75

               
               
               Conread position:146-384
               
               
               Cow position:chr2:26102882-26102657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):25, 30

               
               
               Conread position:146-384
               
               
               Cow position:chr2:32416745-32416978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):89, 147

               
               
               Conread position:146-385
               
               
               Cow position:chr2:6697390-6697619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):124, 7

               
               
               Conread position:147-315
               
               
               Cow position:chr2:44217795-44217963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):117, 95

               
               
               Conread position:147-332
               
               
               Cow position:chr2:15694319-15694140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):113, 63

               
               
               Conread position:147-382
               
               
               Cow position:chr2:32446227-32446454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):117, 130

               
               
               Conread position:147-383
               
               
               Cow position:chr2:549216-549450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):117, 74

               
               
               Conread position:147-383
               
               
               Cow position:chr2:54789888-54789652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):117, 108

               
               
               Conread position:147-384
               
               
               Cow position:chr2:17444911-17444671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:147-384
               
               
               Cow position:chr2:36436320-36436082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):112, 40

               
               
               Conread position:147-384
               
               
               Cow position:chr2:39564466-39564234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):117, 9

               
               
               Conread position:147-384
               
               
               Cow position:chr2:43609004-43609228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):121, 131

               
               
               Conread position:148-348
               
               
               Cow position:chr2:58035220-58035019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):116, 177

               
               
               Conread position:148-364
               
               
               Cow position:chr2:16018119-16018334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):116, 156

               
               
               Conread position:148-381
               
               
               Cow position:chr2:56056862-56056627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):6, 144

               
               
               Conread position:148-384
               
               
               Cow position:chr2:17409894-17410128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):18, 30

               
               
               Conread position:149-383
               
               
               Cow position:chr2:30144831-30144600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 81

               
               
               Conread position:150-347
               
               
               Cow position:chr2:9098603-9098803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:151-384
               
               
               Cow position:chr2:39489884-39489660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):114, 94

               
               
               Conread position:151-389
               
               
               Cow position:chr2:62861698-62861460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):79, 135

               
               
               Conread position:152-348
               
               
               Cow position:chr2:47893808-47894005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):119, 163

               
               
               Conread position:152-355
               
               
               Cow position:chr2:17257953-17257750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):111, 26

               
               
               Conread position:152-368
               
               
               Cow position:chr2:22113588-22113809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:152-378
               
               
               Cow position:chr2:21629-21852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):153, 16

               
               
               Conread position:152-384
               
               
               Cow position:chr2:47056016-47055785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):112, 70

               
               
               Conread position:152-384
               
               
               Cow position:chr2:50580471-50580249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):153, 22

               
               
               Conread position:152-384
               
               
               Cow position:chr2:53532703-53532931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):112, 184

               
               
               Conread position:153-326
               
               
               Cow position:chr2:16492749-16492580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):111, 18

               
               
               Conread position:153-330
               
               
               Cow position:chr2:14089901-14089723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):33, 25

               
               
               Conread position:153-378
               
               
               Cow position:chr2:46190870-46191091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):111, 147

               
               
               Conread position:153-384
               
               
               Cow position:chr2:39941583-39941367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):196, 107

               
               
               Conread position:153-384
               
               
               Cow position:chr2:41461477-41461245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):111, 184

               
               
               Conread position:153-384
               
               
               Cow position:chr2:48361680-48361448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):33, 25

               
               
               Conread position:153-384
               
               
               Cow position:chr2:85281020-85281238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):110, 8

               
               
               Conread position:154-370
               
               
               Cow position:chr2:78197975-78197764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):110, 131

               
               
               Conread position:155-378
               
               
               Cow position:chr2:44232347-44232567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):109, 67

               
               
               Conread position:155-383
               
               
               Cow position:chr2:12051255-12051027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):109, 21

               
               
               Conread position:155-384
               
               
               Cow position:chr2:13604575-13604345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):109, 130

               
               
               Conread position:155-384
               
               
               Cow position:chr2:81348771-81349004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:155-402
               
               
               Cow position:chr2:70579598-70579847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):109, 41

               
               
               Conread position:155-410
               
               
               Cow position:chr2:15391884-15391637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):110, 122

               
               
               Conread position:156-287
               
               
               Cow position:chr2:6329126-6329258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:156-384
               
               
               Cow position:chr2:45912527-45912757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:157-368
               
               
               Cow position:chr2:47990541-47990329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:161-343
               
               
               Cow position:chr2:61132917-61132728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):5, 61

               
               
               Conread position:161-381
               
               
               Cow position:chr2:70945504-70945284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):103, 175

               
               
               Conread position:161-384
               
               
               Cow position:chr2:38747759-38747542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):102, 125

               
               
               Conread position:161-402
               
               
               Cow position:chr2:14734205-14733975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):103, 116

               
               
               Conread position:162-384
               
               
               Cow position:chr2:14555653-14555873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):135, 55

               
               
               Conread position:163-367
               
               
               Cow position:chr2:26880180-26879978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):138, 79

               
               
               Conread position:163-384
               
               
               Cow position:chr2:80324749-80324976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):85, 59

               
               
               Conread position:167-384
               
               
               Cow position:chr2:9325093-9324873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):111, 148

               
               
               Conread position:167-384
               
               
               Cow position:chr2:42226168-42226391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):56, 210

               
               
               Conread position:168-369
               
               
               Cow position:chr2:42265606-42265802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):97, 41

               
               
               Conread position:168-384
               
               
               Cow position:chr2:52344844-52344631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):197, 102

               
               
               Conread position:169-384
               
               
               Cow position:chr2:8354856-8355065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):93, 52

               
               
               Conread position:171-369
               
               
               Cow position:chr2:7769587-7769401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 51

               
               
               Conread position:171-384
               
               
               Cow position:chr2:21416386-21416183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:171-384
               
               
               Cow position:chr2:42936120-42936333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):88, 19

               
               
               Conread position:174-376
               
               
               Cow position:chr2:9173185-9173382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):107, 90

               
               
               Conread position:174-384
               
               
               Cow position:chr2:4383810-4384019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):67, 62

               
               
               Conread position:178-384
               
               
               Cow position:chr2:4655015-4655219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):127, 44

               
               
               Conread position:180-382
               
               
               Cow position:chr2:46293965-46294158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 105

               
               
               Conread position:180-384
               
               
               Cow position:chr2:16564758-16564563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):85, 7

               
               
               Conread position:185-378
               
               
               Cow position:chr2:70539296-70539489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 100

               
               
               Conread position:185-384
               
               
               Cow position:chr2:1352048-1352238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 92

               
               
               Conread position:185-384
               
               
               Cow position:chr2:4254459-4254657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):80, 100

               
               
               Conread position:185-384
               
               
               Cow position:chr2:29269148-29268936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:187-373
               
               
               Cow position:chr2:50614213-50614393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:187-384
               
               
               Cow position:chr2:19597870-19597674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):59, 22

               
               
               Conread position:188-384
               
               
               Cow position:chr2:47147984-47147786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):7, 139

               
               
               Conread position:190-378
               
               
               Cow position:chr2:34535086-34535273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):74, 93

               
               
               Conread position:190-383
               
               
               Cow position:chr2:45666104-45665909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):74, 95

               
               
               Conread position:190-384
               
               
               Cow position:chr2:1300324-1300511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):115, 35

               
               
               Conread position:190-384
               
               
               Cow position:chr2:45281721-45281528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):74, 104

               
               
               Conread position:190-384
               
               
               Cow position:chr2:76764639-76764827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):115, 36

               
               
               Conread position:191-384
               
               
               Cow position:chr2:52171326-52171137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):74, 81

               
               
               Conread position:194-384
               
               
               Cow position:chr2:69367060-69367253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:195-361
               
               
               Cow position:chr2:45389391-45389224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:196-383
               
               
               Cow position:chr2:4273200-4273391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):16, 89

               
               
               Conread position:199-383
               
               
               Cow position:chr2:36878156-36878336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):65, 135

               
               
               Conread position:200-384
               
               
               Cow position:chr2:67313628-67313812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):64, 85

               
               
               Conread position:201-384
               
               
               Cow position:chr2:34695305-34695118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:201-384
               
               
               Cow position:chr2:40691542-40691366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):63, 19

               
               
               Conread position:204-383
               
               
               Cow position:chr2:11806376-11806201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):68, 85

               
               
               Conread position:204-384
               
               
               Cow position:chr2:61974854-61974676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:205-382
               
               
               Cow position:chr2:11617151-11616975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):62, 75

               
               
               Conread position:208-384
               
               
               Cow position:chr2:1756094-1755912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:211-384
               
               
               Cow position:chr2:23493585-23493414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:219-384
               
               
               Cow position:chr2:21284974-21284811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):45, 10

               
               
               Conread position:226-384
               
               
               Cow position:chr2:46994721-46994878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 64

               
               
               Conread position:228-384
               
               
               Cow position:chr2:68716635-68716792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):36, 60

               
               
               Conread position:234-384
               
               
               Cow position:chr2:38628936-38628784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):30, 67

               
               
               Conread position:235-384
               
               
               Cow position:chr2:55877413-55877265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:236-384
               
               
               Cow position:chr2:77378269-77378123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):28, 42

               
               
               Conread position:237-384
               
               
               Cow position:chr2:36007562-36007708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):27, 48

               
               
               Conread position:1-247
               
               
               Cow position:chr20:26060793-26061043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):128, 63

               
               
               Conread position:1-258
               
               
               Cow position:chr20:28935344-28935593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):148, 52

               
               
               Conread position:1-283
               
               
               Cow position:chr20:14898046-14897756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 168

               
               
               Conread position:2-383
               
               
               Cow position:chr20:34251365-34251758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):18, 180

               
               
               Conread position:3-252
               
               
               Cow position:chr20:9033913-9034165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 184

               
               
               Conread position:3-378
               
               
               Cow position:chr20:28296594-28296217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):169, 24

               
               
               Conread position:4-384
               
               
               Cow position:chr20:15118567-15118195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):150, 15

               
               
               Conread position:7-384
               
               
               Cow position:chr20:14880081-14879709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:257
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:9-384
               
               
               Cow position:chr20:24712134-24711754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:249
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):55, 87

               
               
               Conread position:10-238
               
               
               Cow position:chr20:34848196-34847971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 13

               
               
               Conread position:11-220
               
               
               Cow position:chr20:8246013-8245802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):18, 85

               
               
               Conread position:11-287
               
               
               Cow position:chr20:2204403-2204670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):123, 25

               
               
               Conread position:12-282
               
               
               Cow position:chr20:30744433-30744701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):24, 39

               
               
               Conread position:12-383
               
               
               Cow position:chr20:16547982-16548356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):14, 26

               
               
               Conread position:14-265
               
               
               Cow position:chr20:21325612-21325364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:16-272
               
               
               Cow position:chr20:5365217-5364960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):18, 70

               
               
               Conread position:18-252
               
               
               Cow position:chr20:2316144-2316374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):92, 32

               
               
               Conread position:19-348
               
               
               Cow position:chr20:38515070-38514737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 44

               
               
               Conread position:21-377
               
               
               Cow position:chr20:18622856-18622508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):128, 73

               
               
               Conread position:21-378
               
               
               Cow position:chr20:11548445-11548797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):39, 108

               
               
               Conread position:23-238
               
               
               Cow position:chr20:27323552-27323331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:23-384
               
               
               Cow position:chr20:10200629-10200266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 324

               
               
               Conread position:25-255
               
               
               Cow position:chr20:37273265-37273046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:25-367
               
               
               Cow position:chr20:11340527-11340862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):22, 71

               
               
               Conread position:25-384
               
               
               Cow position:chr20:32523737-32523379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):116, 18

               
               
               Conread position:26-332
               
               
               Cow position:chr20:16097115-16096812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):124, 23

               
               
               Conread position:27-252
               
               
               Cow position:chr20:33076537-33076772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):24, 171

               
               
               Conread position:27-384
               
               
               Cow position:chr20:15548623-15548977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 26

               
               
               Conread position:27-384
               
               
               Cow position:chr20:35888484-35888848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):148, 127

               
               
               Conread position:28-241
               
               
               Cow position:chr20:1824359-1824566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):137, 24

               
               
               Conread position:28-252
               
               
               Cow position:chr20:22923192-22922969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 92

               
               
               Conread position:28-260
               
               
               Cow position:chr20:8021411-8021168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:28-384
               
               
               Cow position:chr20:15312922-15312583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):190, 22

               
               
               Conread position:29-369
               
               
               Cow position:chr20:16941006-16941355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):24, 216

               
               
               Conread position:29-373
               
               
               Cow position:chr20:28517901-28518241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):24, 153

               
               
               Conread position:31-314
               
               
               Cow position:chr20:35742040-35741755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):113, 22

               
               
               Conread position:31-384
               
               
               Cow position:chr20:6257810-6258141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:31-384
               
               
               Cow position:chr20:7425930-7426268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 12

               
               
               Conread position:31-384
               
               
               Cow position:chr20:8556000-8556351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 22

               
               
               Conread position:32-272
               
               
               Cow position:chr20:14283191-14282950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):115, 21

               
               
               Conread position:32-310
               
               
               Cow position:chr20:26850517-26850798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):114, 17

               
               
               Conread position:32-347
               
               
               Cow position:chr20:25953536-25953222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:32-379
               
               
               Cow position:chr20:5950369-5950713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 155

               
               
               Conread position:32-384
               
               
               Cow position:chr20:34097679-34098039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):8, 22

               
               
               Conread position:32-384
               
               
               Cow position:chr20:36779449-36779811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:248
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):110, 277

               
               
               Conread position:33-317
               
               
               Cow position:chr20:35176507-35176793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):155, 20

               
               
               Conread position:33-378
               
               
               Cow position:chr20:35193025-35192703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):138, 15

               
               
               Conread position:33-379
               
               
               Cow position:chr20:5078903-5078548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):105, 30

               
               
               Conread position:33-383
               
               
               Cow position:chr20:15568694-15569026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):139, 58

               
               
               Conread position:34-282
               
               
               Cow position:chr20:25021697-25021448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):93, 19

               
               
               Conread position:34-332
               
               
               Cow position:chr20:20967581-20967290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):68, 30

               
               
               Conread position:34-384
               
               
               Cow position:chr20:36011055-36010712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):220, 40

               
               
               Conread position:35-362
               
               
               Cow position:chr20:16818683-16818357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):119, 18

               
               
               Conread position:35-413
               
               
               Cow position:chr20:33819495-33819104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):112, 29

               
               
               Conread position:37-314
               
               
               Cow position:chr20:30755548-30755268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):145, 237

               
               
               Conread position:37-368
               
               
               Cow position:chr20:32513269-32512935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:37-384
               
               
               Cow position:chr20:2819811-2819462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 34

               
               
               Conread position:37-384
               
               
               Cow position:chr20:3141838-3141500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):112, 16

               
               
               Conread position:37-384
               
               
               Cow position:chr20:34596838-34597181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):55, 79

               
               
               Conread position:38-214
               
               
               Cow position:chr20:23506201-23506024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):12, 33

               
               
               Conread position:38-238
               
               
               Cow position:chr20:37358122-37357921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):116, 26

               
               
               Conread position:38-348
               
               
               Cow position:chr20:1293766-1294075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):118, 15

               
               
               Conread position:38-368
               
               
               Cow position:chr20:20352647-20352979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):115, 15

               
               
               Conread position:38-378
               
               
               Cow position:chr20:6054244-6054590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):106, 26

               
               
               Conread position:38-383
               
               
               Cow position:chr20:20926360-20926702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):27, 142

               
               
               Conread position:38-383
               
               
               Cow position:chr20:22937050-22937392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 142

               
               
               Conread position:38-383
               
               
               Cow position:chr20:23286068-23286403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):37, 19

               
               
               Conread position:39-235
               
               
               Cow position:chr20:16977573-16977776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:39-373
               
               
               Cow position:chr20:6248340-6248665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):105, 12

               
               
               Conread position:39-378
               
               
               Cow position:chr20:17251981-17251641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 25

               
               
               Conread position:39-384
               
               
               Cow position:chr20:27407632-27407955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:39-384
               
               
               Cow position:chr20:38872735-38873089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:239
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):31, 265

               
               
               Conread position:40-272
               
               
               Cow position:chr20:7416896-7417137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:40-383
               
               
               Cow position:chr20:12420356-12420698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 112

               
               
               Conread position:41-183
               
               
               Cow position:chr20:2069871-2070012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:41-369
               
               
               Cow position:chr20:4944987-4945311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):16, 174

               
               
               Conread position:42-348
               
               
               Cow position:chr20:39016609-39016921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):107, 148

               
               
               Conread position:42-379
               
               
               Cow position:chr20:31289764-31289430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):19, 53

               
               
               Conread position:43-384
               
               
               Cow position:chr20:10209066-10208725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 102

               
               
               Conread position:44-383
               
               
               Cow position:chr20:42309709-42310041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:44-384
               
               
               Cow position:chr20:5024708-5025029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):334, 94

               
               
               Conread position:45-229
               
               
               Cow position:chr20:22012645-22012470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:46-257
               
               
               Cow position:chr20:19834573-19834784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:46-384
               
               
               Cow position:chr20:7438601-7438934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):218, 80

               
               
               Conread position:47-378
               
               
               Cow position:chr20:8429995-8429675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):41, 49

               
               
               Conread position:47-384
               
               
               Cow position:chr20:2298539-2298858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):26, 94

               
               
               Conread position:48-357
               
               
               Cow position:chr20:36239503-36239190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):121, 16

               
               
               Conread position:48-384
               
               
               Cow position:chr20:39417650-39417980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):278, 16

               
               
               Conread position:49-220
               
               
               Cow position:chr20:38061520-38061683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:49-251
               
               
               Cow position:chr20:1640214-1640401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:49-258
               
               
               Cow position:chr20:20590049-20590256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):16, 94

               
               
               Conread position:49-274
               
               
               Cow position:chr20:3564406-3564188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):215, 88

               
               
               Conread position:49-274
               
               
               Cow position:chr20:14490495-14490278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):214, 34

               
               
               Conread position:49-332
               
               
               Cow position:chr20:40422844-40423132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 242

               
               
               Conread position:49-346
               
               
               Cow position:chr20:9376715-9376426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):215, 68

               
               
               Conread position:49-379
               
               
               Cow position:chr20:19237324-19237003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):122, 79

               
               
               Conread position:49-382
               
               
               Cow position:chr20:28249437-28249108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 123

               
               
               Conread position:49-384
               
               
               Cow position:chr20:4206207-4205887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 28

               
               
               Conread position:50-202
               
               
               Cow position:chr20:11368111-11368261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):19, 96

               
               
               Conread position:50-206
               
               
               Cow position:chr20:21169517-21169665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:50-209
               
               
               Cow position:chr20:35605455-35605301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:50-234
               
               
               Cow position:chr20:38700874-38701055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):7, 95

               
               
               Conread position:50-250
               
               
               Cow position:chr20:14755591-14755787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):114, 77

               
               
               Conread position:50-295
               
               
               Cow position:chr20:38925596-38925844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 134

               
               
               Conread position:50-325
               
               
               Cow position:chr20:7756385-7756646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):214, 36

               
               
               Conread position:50-379
               
               
               Cow position:chr20:747183-746871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):116, 14

               
               
               Conread position:50-383
               
               
               Cow position:chr20:8702679-8702989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):212, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr20:1139509-1139857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 137

               
               
               Conread position:50-384
               
               
               Cow position:chr20:14807136-14806805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:50-384
               
               
               Cow position:chr20:16935054-16935380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:250
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):26, 89

               
               
               Conread position:50-384
               
               
               Cow position:chr20:22235551-22235234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):162, 76

               
               
               Conread position:50-384
               
               
               Cow position:chr20:22265016-22265326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:50-384
               
               
               Cow position:chr20:26996786-26996453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 136

               
               
               Conread position:50-384
               
               
               Cow position:chr20:31739965-31740301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 34

               
               
               Conread position:50-384
               
               
               Cow position:chr20:38551629-38551292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 114

               
               
               Conread position:50-397
               
               
               Cow position:chr20:38818242-38817914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:250
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):16, 79

               
               
               Conread position:51-368
               
               
               Cow position:chr20:21345691-21345363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):11, 253

               
               
               Conread position:51-384
               
               
               Cow position:chr20:30710393-30710727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):206, 6

               
               
               Conread position:51-384
               
               
               Cow position:chr20:33532542-33532226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):15, 71

               
               
               Conread position:52-236
               
               
               Cow position:chr20:4931328-4931153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:52-237
               
               
               Cow position:chr20:24491777-24491962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):138, 88

               
               
               Conread position:52-282
               
               
               Cow position:chr20:24097245-24097021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):212, 66

               
               
               Conread position:52-315
               
               
               Cow position:chr20:11043210-11043489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):78, 187

               
               
               Conread position:52-343
               
               
               Cow position:chr20:11359389-11359669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):195, 34

               
               
               Conread position:52-368
               
               
               Cow position:chr20:38090167-38089847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 245

               
               
               Conread position:52-384
               
               
               Cow position:chr20:8308253-8307936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):63, 12

               
               
               Conread position:52-384
               
               
               Cow position:chr20:39325641-39325308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):136, 12

               
               
               Conread position:52-388
               
               
               Cow position:chr20:7737984-7738311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 89

               
               
               Conread position:53-227
               
               
               Cow position:chr20:6370543-6370370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:53-300
               
               
               Cow position:chr20:20158380-20158140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):211, 89

               
               
               Conread position:53-317
               
               
               Cow position:chr20:14556503-14556770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):129, 11

               
               
               Conread position:53-326
               
               
               Cow position:chr20:34083970-34083697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):86, 137

               
               
               Conread position:53-348
               
               
               Cow position:chr20:41028739-41028444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 30

               
               
               Conread position:53-364
               
               
               Cow position:chr20:14759424-14759721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):14, 74

               
               
               Conread position:53-371
               
               
               Cow position:chr20:32583570-32583240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):96, 126

               
               
               Conread position:53-378
               
               
               Cow position:chr20:3739760-3740072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):198, 91

               
               
               Conread position:53-378
               
               
               Cow position:chr20:29845304-29844976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 125

               
               
               Conread position:53-382
               
               
               Cow position:chr20:38868870-38868565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):215, 39

               
               
               Conread position:53-383
               
               
               Cow position:chr20:8547309-8546986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 42

               
               
               Conread position:53-384
               
               
               Cow position:chr20:3255283-3254972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 86

               
               
               Conread position:53-384
               
               
               Cow position:chr20:6603278-6602959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):211, 25

               
               
               Conread position:53-384
               
               
               Cow position:chr20:11045923-11045593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):112, 121

               
               
               Conread position:53-384
               
               
               Cow position:chr20:13269863-13269546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:53-384
               
               
               Cow position:chr20:21019807-21019483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):91, 38

               
               
               Conread position:53-384
               
               
               Cow position:chr20:39518260-39517926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):62, 42

               
               
               Conread position:53-384
               
               
               Cow position:chr20:40177493-40177165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 91

               
               
               Conread position:53-386
               
               
               Cow position:chr20:11611930-11611598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):96, 122

               
               
               Conread position:54-214
               
               
               Cow position:chr20:34881155-34881308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:54-238
               
               
               Cow position:chr20:19919570-19919751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):117, 73

               
               
               Conread position:54-241
               
               
               Cow position:chr20:19746220-19746033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 104

               
               
               Conread position:54-348
               
               
               Cow position:chr20:35146262-35145977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):107, 67

               
               
               Conread position:54-383
               
               
               Cow position:chr20:28605454-28605124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 74

               
               
               Conread position:54-384
               
               
               Cow position:chr20:7441894-7442207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):212, 38

               
               
               Conread position:54-384
               
               
               Cow position:chr20:14980259-14980592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 91

               
               
               Conread position:54-384
               
               
               Cow position:chr20:28594540-28594202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):106, 20

               
               
               Conread position:54-384
               
               
               Cow position:chr20:39398730-39398405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 224

               
               
               Conread position:54-385
               
               
               Cow position:chr20:11135504-11135838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):143, 231

               
               
               Conread position:55-255
               
               
               Cow position:chr20:35442034-35442234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):89, 102

               
               
               Conread position:55-384
               
               
               Cow position:chr20:32083852-32084162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):211, 73

               
               
               Conread position:55-384
               
               
               Cow position:chr20:32865956-32866268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):209, 18

               
               
               Conread position:56-322
               
               
               Cow position:chr20:42166543-42166801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):206, 51

               
               
               Conread position:56-369
               
               
               Cow position:chr20:7624013-7624312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):206, 86

               
               
               Conread position:56-384
               
               
               Cow position:chr20:4334292-4334605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):111, 71

               
               
               Conread position:56-384
               
               
               Cow position:chr20:12205498-12205812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):136, 35

               
               
               Conread position:56-384
               
               
               Cow position:chr20:14572129-14572440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):10, 92

               
               
               Conread position:56-384
               
               
               Cow position:chr20:23846419-23846750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 89

               
               
               Conread position:57-216
               
               
               Cow position:chr20:12652682-12652843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):99, 130

               
               
               Conread position:57-216
               
               
               Cow position:chr20:33462474-33462313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):97, 118

               
               
               Conread position:57-224
               
               
               Cow position:chr20:34271575-34271406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):90, 133

               
               
               Conread position:57-250
               
               
               Cow position:chr20:8679415-8679610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 137

               
               
               Conread position:57-263
               
               
               Cow position:chr20:13805561-13805357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):129, 65

               
               
               Conread position:57-291
               
               
               Cow position:chr20:15766361-15766122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):35, 225

               
               
               Conread position:57-329
               
               
               Cow position:chr20:21372541-21372281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):114, 36

               
               
               Conread position:57-334
               
               
               Cow position:chr20:39743548-39743275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):205, 48

               
               
               Conread position:57-384
               
               
               Cow position:chr20:5814815-5814493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):31, 173

               
               
               Conread position:57-384
               
               
               Cow position:chr20:8578500-8578167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 299

               
               
               Conread position:57-384
               
               
               Cow position:chr20:12581711-12582031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 89

               
               
               Conread position:57-384
               
               
               Cow position:chr20:18379622-18379301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 86

               
               
               Conread position:57-384
               
               
               Cow position:chr20:20984242-20983917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):87, 224

               
               
               Conread position:57-386
               
               
               Cow position:chr20:28982944-28982616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 84

               
               
               Conread position:58-325
               
               
               Cow position:chr20:14620063-14620331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):132, 16

               
               
               Conread position:58-384
               
               
               Cow position:chr20:34202886-34202568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):50, 136

               
               
               Conread position:58-384
               
               
               Cow position:chr20:41089548-41089871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):86, 162

               
               
               Conread position:59-178
               
               
               Cow position:chr20:2828019-2827900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-231
               
               
               Cow position:chr20:17606721-17606895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):88, 119

               
               
               Conread position:59-248
               
               
               Cow position:chr20:6473978-6473788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):103, 127

               
               
               Conread position:59-282
               
               
               Cow position:chr20:33623316-33623532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:59-327
               
               
               Cow position:chr20:12126058-12126328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):76, 226

               
               
               Conread position:59-330
               
               
               Cow position:chr20:11002647-11002370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 128

               
               
               Conread position:59-348
               
               
               Cow position:chr20:23549000-23548701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):97, 128

               
               
               Conread position:59-352
               
               
               Cow position:chr20:32665379-32665085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):200, 98

               
               
               Conread position:59-368
               
               
               Cow position:chr20:4755591-4755897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):176, 102

               
               
               Conread position:59-381
               
               
               Cow position:chr20:22065304-22064994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 86

               
               
               Conread position:59-383
               
               
               Cow position:chr20:23540928-23541237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):105, 35

               
               
               Conread position:59-384
               
               
               Cow position:chr20:13876466-13876786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):86, 27

               
               
               Conread position:59-384
               
               
               Cow position:chr20:14433177-14433509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):85, 99

               
               
               Conread position:59-384
               
               
               Cow position:chr20:32847586-32847275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):9, 81

               
               
               Conread position:59-384
               
               
               Cow position:chr20:33434916-33435249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):76, 58

               
               
               Conread position:59-384
               
               
               Cow position:chr20:34221725-34221399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):85, 243

               
               
               Conread position:59-384
               
               
               Cow position:chr20:39254718-39255043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):85, 68

               
               
               Conread position:60-249
               
               
               Cow position:chr20:4891876-4892065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:60-249
               
               
               Cow position:chr20:19201776-19201585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:60-265
               
               
               Cow position:chr20:23358252-23358453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:60-267
               
               
               Cow position:chr20:381892-382096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):202, 23

               
               
               Conread position:60-326
               
               
               Cow position:chr20:15530102-15529845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):77, 31

               
               
               Conread position:60-343
               
               
               Cow position:chr20:21428400-21428120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):194, 85

               
               
               Conread position:60-348
               
               
               Cow position:chr20:4786790-4787058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):204, 56

               
               
               Conread position:60-378
               
               
               Cow position:chr20:5009974-5009664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):102, 126

               
               
               Conread position:60-382
               
               
               Cow position:chr20:398070-398382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):202, 82

               
               
               Conread position:60-384
               
               
               Cow position:chr20:7658983-7659299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):32, 121

               
               
               Conread position:60-384
               
               
               Cow position:chr20:13829502-13829184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):90, 31

               
               
               Conread position:61-233
               
               
               Cow position:chr20:26387697-26387531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:61-267
               
               
               Cow position:chr20:19635937-19636141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):36, 81

               
               
               Conread position:61-283
               
               
               Cow position:chr20:5703713-5703490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):88, 30

               
               
               Conread position:61-384
               
               
               Cow position:chr20:24070043-24069723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 26

               
               
               Conread position:62-275
               
               
               Cow position:chr20:36312271-36312481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:62-344
               
               
               Cow position:chr20:11751894-11751608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):89, 117

               
               
               Conread position:62-384
               
               
               Cow position:chr20:25009393-25009718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 85

               
               
               Conread position:63-262
               
               
               Cow position:chr20:27315215-27315023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:63-366
               
               
               Cow position:chr20:11008412-11008108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):65, 97

               
               
               Conread position:63-384
               
               
               Cow position:chr20:12995754-12996090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):58, 148

               
               
               Conread position:63-384
               
               
               Cow position:chr20:28441558-28441249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:64-272
               
               
               Cow position:chr20:37919138-37919340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):200, 28

               
               
               Conread position:64-297
               
               
               Cow position:chr20:3148919-3148691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:177
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):200, 44

               
               
               Conread position:64-384
               
               
               Cow position:chr20:6240282-6240602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 135

               
               
               Conread position:65-384
               
               
               Cow position:chr20:9266864-9267181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 6

               
               
               Conread position:68-274
               
               
               Cow position:chr20:39268848-39269057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:68-275
               
               
               Cow position:chr20:24314803-24315006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):196, 18

               
               
               Conread position:68-350
               
               
               Cow position:chr20:20898355-20898637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):196, 217

               
               
               Conread position:69-365
               
               
               Cow position:chr20:23850854-23850559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 38

               
               
               Conread position:71-238
               
               
               Cow position:chr20:6849126-6848960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 80

               
               
               Conread position:72-256
               
               
               Cow position:chr20:26905892-26905722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:72-282
               
               
               Cow position:chr20:35444876-35445083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):190, 19

               
               
               Conread position:72-362
               
               
               Cow position:chr20:10188505-10188215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):85, 71

               
               
               Conread position:72-377
               
               
               Cow position:chr20:33976719-33976408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):67, 143

               
               
               Conread position:72-384
               
               
               Cow position:chr20:5998431-5998749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:72-384
               
               
               Cow position:chr20:13752443-13752159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):157, 22

               
               
               Conread position:73-309
               
               
               Cow position:chr20:5702951-5702717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:183
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):44, 56

               
               
               Conread position:73-382
               
               
               Cow position:chr20:25161902-25162207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 36

               
               
               Conread position:73-384
               
               
               Cow position:chr20:15822779-15822471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 47

               
               
               Conread position:74-262
               
               
               Cow position:chr20:26040869-26041057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-368
               
               
               Cow position:chr20:354671-354961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):69, 145

               
               
               Conread position:75-368
               
               
               Cow position:chr20:33067132-33067428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):69, 77

               
               
               Conread position:76-378
               
               
               Cow position:chr20:38670992-38670684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):65, 221

               
               
               Conread position:76-384
               
               
               Cow position:chr20:22959118-22959423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 121

               
               
               Conread position:79-384
               
               
               Cow position:chr20:6424177-6423891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):185, 68

               
               
               Conread position:79-384
               
               
               Cow position:chr20:31746413-31746709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):193, 72

               
               
               Conread position:82-383
               
               
               Cow position:chr20:9433802-9433507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):182, 63

               
               
               Conread position:82-384
               
               
               Cow position:chr20:23792814-23792530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:223
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):183, 45

               
               
               Conread position:83-384
               
               
               Cow position:chr20:23982695-23982390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 94

               
               
               Conread position:85-368
               
               
               Cow position:chr20:39153462-39153181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 111

               
               
               Conread position:86-384
               
               
               Cow position:chr20:31927244-31927535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):51, 70

               
               
               Conread position:87-264
               
               
               Cow position:chr20:630738-630564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:90-217
               
               
               Cow position:chr20:12033411-12033535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:97-345
               
               
               Cow position:chr20:12239481-12239730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):167, 44

               
               
               Conread position:97-362
               
               
               Cow position:chr20:17100564-17100302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):11, 49

               
               
               Conread position:97-382
               
               
               Cow position:chr20:40782172-40781887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 185

               
               
               Conread position:98-373
               
               
               Cow position:chr20:10996316-10996039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):54, 78

               
               
               Conread position:98-383
               
               
               Cow position:chr20:20099391-20099677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):32, 159

               
               
               Conread position:98-383
               
               
               Cow position:chr20:20203418-20203136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 47

               
               
               Conread position:100-332
               
               
               Cow position:chr20:19060638-19060868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):143, 46

               
               
               Conread position:100-384
               
               
               Cow position:chr20:32463323-32463602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 47

               
               
               Conread position:105-384
               
               
               Cow position:chr20:8098486-8098201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):32, 70

               
               
               Conread position:107-378
               
               
               Cow position:chr20:22485057-22484788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 144

               
               
               Conread position:125-384
               
               
               Cow position:chr20:39415926-39415663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):42, 36

               
               
               Conread position:128-382
               
               
               Cow position:chr20:5827113-5826862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):122, 18

               
               
               Conread position:128-384
               
               
               Cow position:chr20:5636655-5636403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):97, 9

               
               
               Conread position:128-384
               
               
               Cow position:chr20:18392098-18392342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-384
               
               
               Cow position:chr20:22978502-22978240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):136, 160

               
               
               Conread position:128-384
               
               
               Cow position:chr20:42469932-42469680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):138, 24

               
               
               Conread position:129-341
               
               
               Cow position:chr20:1576271-1576055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):88, 124

               
               
               Conread position:129-378
               
               
               Cow position:chr20:14100261-14100507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):169, 104

               
               
               Conread position:129-382
               
               
               Cow position:chr20:11550539-11550287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):135, 15

               
               
               Conread position:129-384
               
               
               Cow position:chr20:9537304-9537053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):138, 23

               
               
               Conread position:130-383
               
               
               Cow position:chr20:31081211-31080962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):166, 123

               
               
               Conread position:131-332
               
               
               Cow position:chr20:21815731-21815532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:131-342
               
               
               Cow position:chr20:40158070-40157862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:131-366
               
               
               Cow position:chr20:22030489-22030258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-368
               
               
               Cow position:chr20:12085265-12085489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):133, 99

               
               
               Conread position:131-368
               
               
               Cow position:chr20:20056314-20056549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):120, 80

               
               
               Conread position:131-380
               
               
               Cow position:chr20:13983527-13983286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):128, 24

               
               
               Conread position:131-384
               
               
               Cow position:chr20:17846132-17845880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):27, 109

               
               
               Conread position:131-384
               
               
               Cow position:chr20:23064665-23064910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):173, 16

               
               
               Conread position:131-384
               
               
               Cow position:chr20:41883902-41883655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:132-328
               
               
               Cow position:chr20:26723512-26723699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):129, 20

               
               
               Conread position:132-362
               
               
               Cow position:chr20:39962746-39962517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):34, 56

               
               
               Conread position:132-383
               
               
               Cow position:chr20:580749-581001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):131, 201

               
               
               Conread position:132-384
               
               
               Cow position:chr20:19751476-19751227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:132-384
               
               
               Cow position:chr20:29805488-29805740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):132, 60

               
               
               Conread position:132-384
               
               
               Cow position:chr20:38578593-38578840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):132, 113

               
               
               Conread position:133-343
               
               
               Cow position:chr20:34777350-34777140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):131, 155

               
               
               Conread position:133-355
               
               
               Cow position:chr20:10772375-10772152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):131, 78

               
               
               Conread position:133-384
               
               
               Cow position:chr20:3320976-3321222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:133-384
               
               
               Cow position:chr20:35906882-35907133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):93, 18

               
               
               Conread position:133-384
               
               
               Cow position:chr20:38768293-38768537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 97

               
               
               Conread position:134-384
               
               
               Cow position:chr20:11542114-11542364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):24, 132

               
               
               Conread position:134-384
               
               
               Cow position:chr20:28067255-28067507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):132, 40

               
               
               Conread position:135-384
               
               
               Cow position:chr20:7363128-7362888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):169, 11

               
               
               Conread position:135-384
               
               
               Cow position:chr20:35365210-35364965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):129, 39

               
               
               Conread position:136-281
               
               
               Cow position:chr20:8912334-8912478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):128, 10

               
               
               Conread position:138-311
               
               
               Cow position:chr20:11392942-11392777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 13

               
               
               Conread position:138-384
               
               
               Cow position:chr20:6096332-6096574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):128, 14

               
               
               Conread position:139-378
               
               
               Cow position:chr20:15565665-15565896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):5, 13

               
               
               Conread position:139-384
               
               
               Cow position:chr20:18320630-18320872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):165, 83

               
               
               Conread position:141-377
               
               
               Cow position:chr20:30888196-30887960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):74, 15

               
               
               Conread position:141-398
               
               
               Cow position:chr20:21204516-21204266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):17, 63

               
               
               Conread position:142-385
               
               
               Cow position:chr20:16492232-16491990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):101, 28

               
               
               Conread position:146-383
               
               
               Cow position:chr20:40511599-40511837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):142, 231

               
               
               Conread position:146-384
               
               
               Cow position:chr20:9412645-9412409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):46, 41

               
               
               Conread position:146-384
               
               
               Cow position:chr20:19459508-19459742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):122, 201

               
               
               Conread position:146-384
               
               
               Cow position:chr20:36207971-36207725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):112, 239

               
               
               Conread position:147-384
               
               
               Cow position:chr20:34108261-34108032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:148-384
               
               
               Cow position:chr20:33363672-33363436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):116, 13

               
               
               Conread position:149-343
               
               
               Cow position:chr20:39212425-39212621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):14, 87

               
               
               Conread position:151-282
               
               
               Cow position:chr20:8817339-8817471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:151-344
               
               
               Cow position:chr20:22000153-21999957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):84, 14

               
               
               Conread position:151-365
               
               
               Cow position:chr20:33144401-33144614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):114, 138

               
               
               Conread position:151-384
               
               
               Cow position:chr20:39266806-39267040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):108, 84

               
               
               Conread position:152-380
               
               
               Cow position:chr20:35009584-35009823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:152-382
               
               
               Cow position:chr20:35710327-35710093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):34, 175

               
               
               Conread position:152-384
               
               
               Cow position:chr20:19363212-19363444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):112, 28

               
               
               Conread position:155-378
               
               
               Cow position:chr20:21929053-21928831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):109, 137

               
               
               Conread position:155-384
               
               
               Cow position:chr20:13025462-13025691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):82, 137

               
               
               Conread position:155-384
               
               
               Cow position:chr20:15235900-15235688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:155-384
               
               
               Cow position:chr20:26077520-26077738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):109, 130

               
               
               Conread position:156-340
               
               
               Cow position:chr20:6358767-6358578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):107, 129

               
               
               Conread position:162-384
               
               
               Cow position:chr20:7211175-7210959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):102, 28

               
               
               Conread position:165-366
               
               
               Cow position:chr20:28955563-28955762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):99, 120

               
               
               Conread position:168-309
               
               
               Cow position:chr20:1009571-1009712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 117

               
               
               Conread position:168-348
               
               
               Cow position:chr20:39613139-39613319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 6

               
               
               Conread position:173-384
               
               
               Cow position:chr20:34001260-34001474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:174-368
               
               
               Cow position:chr20:23506341-23506534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):85, 111

               
               
               Conread position:176-378
               
               
               Cow position:chr20:24000670-24000872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 7

               
               
               Conread position:179-378
               
               
               Cow position:chr20:17765207-17765404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 58

               
               
               Conread position:180-384
               
               
               Cow position:chr20:35797732-35797527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):85, 42

               
               
               Conread position:182-383
               
               
               Cow position:chr20:11482013-11482215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 35

               
               
               Conread position:182-384
               
               
               Cow position:chr20:3606840-3607037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):82, 43

               
               
               Conread position:185-382
               
               
               Cow position:chr20:22313042-22313237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):79, 131

               
               
               Conread position:191-384
               
               
               Cow position:chr20:23103335-23103139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):65, 94

               
               
               Conread position:194-384
               
               
               Cow position:chr20:19616601-19616405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):68, 121

               
               
               Conread position:196-378
               
               
               Cow position:chr20:3331178-3331362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 65

               
               
               Conread position:197-384
               
               
               Cow position:chr20:35958754-35958564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:200-384
               
               
               Cow position:chr20:23505931-23505748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):65, 148

               
               
               Conread position:202-385
               
               
               Cow position:chr20:39019797-39019612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:204-382
               
               
               Cow position:chr20:17530314-17530494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 18

               
               
               Conread position:206-384
               
               
               Cow position:chr20:34901669-34901488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:223-384
               
               
               Cow position:chr20:22704375-22704211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:1-238
               
               
               Cow position:chr21:7539202-7539442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 178

               
               
               Conread position:6-384
               
               
               Cow position:chr21:19083278-19083656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):141, 31

               
               
               Conread position:7-378
               
               
               Cow position:chr21:38728471-38728112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):147, 20

               
               
               Conread position:7-384
               
               
               Cow position:chr21:4281573-4281932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):259, 24

               
               
               Conread position:9-383
               
               
               Cow position:chr21:9301541-9301153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):51, 179

               
               
               Conread position:10-346
               
               
               Cow position:chr21:12354386-12354715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 145

               
               
               Conread position:11-252
               
               
               Cow position:chr21:5214670-5214420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:11-252
               
               
               Cow position:chr21:12349078-12348837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):135, 46

               
               
               Conread position:11-325
               
               
               Cow position:chr21:8430780-8431103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:11-384
               
               
               Cow position:chr21:22861304-22860939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):256, 117

               
               
               Conread position:13-269
               
               
               Cow position:chr21:15012742-15012493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:196
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):18, 11

               
               
               Conread position:14-254
               
               
               Cow position:chr21:27409433-27409662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:14-348
               
               
               Cow position:chr21:38720556-38720228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):130, 35

               
               
               Conread position:15-316
               
               
               Cow position:chr21:39319106-39319406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):12, 34

               
               
               Conread position:17-367
               
               
               Cow position:chr21:6017934-6017576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:17-378
               
               
               Cow position:chr21:17184226-17183869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):40, 244

               
               
               Conread position:20-383
               
               
               Cow position:chr21:11779233-11779589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 184

               
               
               Conread position:21-355
               
               
               Cow position:chr21:37640868-37640526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):128, 170

               
               
               Conread position:21-383
               
               
               Cow position:chr21:18059653-18060016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:250
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):18, 161

               
               
               Conread position:23-273
               
               
               Cow position:chr21:9505168-9504916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):114, 41

               
               
               Conread position:25-351
               
               
               Cow position:chr21:10130444-10130110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:26-254
               
               
               Cow position:chr21:22211548-22211323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):128, 22

               
               
               Conread position:26-280
               
               
               Cow position:chr21:12310771-12310520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):6, 26

               
               
               Conread position:26-384
               
               
               Cow position:chr21:32559078-32559419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 27

               
               
               Conread position:26-384
               
               
               Cow position:chr21:41974073-41974435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):110, 27

               
               
               Conread position:26-397
               
               
               Cow position:chr21:37299758-37299388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 69

               
               
               Conread position:27-273
               
               
               Cow position:chr21:37928950-37928699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 71

               
               
               Conread position:27-384
               
               
               Cow position:chr21:22209948-22210304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):111, 25

               
               
               Conread position:28-234
               
               
               Cow position:chr21:42455156-42454951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 100

               
               
               Conread position:28-384
               
               
               Cow position:chr21:44825575-44825945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 89

               
               
               Conread position:29-203
               
               
               Cow position:chr21:42341646-42341817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 110

               
               
               Conread position:29-228
               
               
               Cow position:chr21:31462849-31462658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:29-238
               
               
               Cow position:chr21:18450050-18449839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):6, 159

               
               
               Conread position:29-241
               
               
               Cow position:chr21:24611476-24611690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):8, 96

               
               
               Conread position:29-280
               
               
               Cow position:chr21:26018673-26018422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):118, 24

               
               
               Conread position:29-343
               
               
               Cow position:chr21:44963086-44962775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):107, 19

               
               
               Conread position:29-378
               
               
               Cow position:chr21:6998239-6997886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:256
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:29-378
               
               
               Cow position:chr21:22014487-22014133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 59

               
               
               Conread position:29-379
               
               
               Cow position:chr21:45151330-45151674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 148

               
               
               Conread position:29-385
               
               
               Cow position:chr21:9706975-9707334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):55, 8

               
               
               Conread position:30-383
               
               
               Cow position:chr21:10004592-10004945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 35

               
               
               Conread position:30-384
               
               
               Cow position:chr21:29001852-29002218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 45

               
               
               Conread position:30-384
               
               
               Cow position:chr21:40266416-40266061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 34

               
               
               Conread position:30-385
               
               
               Cow position:chr21:47719017-47719360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 21

               
               
               Conread position:31-241
               
               
               Cow position:chr21:48482237-48482447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):10, 96

               
               
               Conread position:31-373
               
               
               Cow position:chr21:27521053-27521380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:31-378
               
               
               Cow position:chr21:22856511-22856167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):116, 48

               
               
               Conread position:31-384
               
               
               Cow position:chr21:25127901-25127541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:31-384
               
               
               Cow position:chr21:27123833-27124185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):234, 120

               
               
               Conread position:32-240
               
               
               Cow position:chr21:39278000-39278213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 149

               
               
               Conread position:32-295
               
               
               Cow position:chr21:22851207-22850950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):30, 101

               
               
               Conread position:32-332
               
               
               Cow position:chr21:26562868-26563167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):130, 234

               
               
               Conread position:32-378
               
               
               Cow position:chr21:47363433-47363792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:251
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):89, 82

               
               
               Conread position:32-383
               
               
               Cow position:chr21:14464871-14464531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:32-384
               
               
               Cow position:chr21:24342976-24343325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:33-282
               
               
               Cow position:chr21:9417860-9418114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 20

               
               
               Conread position:33-378
               
               
               Cow position:chr21:13047901-13048248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):116, 31

               
               
               Conread position:33-378
               
               
               Cow position:chr21:13840617-13840271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):160, 40

               
               
               Conread position:34-230
               
               
               Cow position:chr21:646026-646223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):123, 155

               
               
               Conread position:34-324
               
               
               Cow position:chr21:8545731-8546018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):110, 143

               
               
               Conread position:35-255
               
               
               Cow position:chr21:6583851-6584069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):21, 141

               
               
               Conread position:35-304
               
               
               Cow position:chr21:9278816-9278544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):102, 151

               
               
               Conread position:36-317
               
               
               Cow position:chr21:29658560-29658286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):130, 29

               
               
               Conread position:36-331
               
               
               Cow position:chr21:21900308-21900607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):130, 135

               
               
               Conread position:37-211
               
               
               Cow position:chr21:17857051-17856878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:37-269
               
               
               Cow position:chr21:17155664-17155898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:37-384
               
               
               Cow position:chr21:32297222-32297567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:247
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):100, 242

               
               
               Conread position:38-220
               
               
               Cow position:chr21:36398285-36398459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:38-258
               
               
               Cow position:chr21:874611-874387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):19, 140

               
               
               Conread position:38-343
               
               
               Cow position:chr21:10423394-10423092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 26

               
               
               Conread position:38-355
               
               
               Cow position:chr21:18064640-18064944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):28, 92

               
               
               Conread position:38-368
               
               
               Cow position:chr21:21907158-21907473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:38-368
               
               
               Cow position:chr21:40786963-40786635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:39-240
               
               
               Cow position:chr21:15271157-15271353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):127, 17

               
               
               Conread position:39-273
               
               
               Cow position:chr21:40475783-40475550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):108, 14

               
               
               Conread position:39-317
               
               
               Cow position:chr21:19561281-19561560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):107, 25

               
               
               Conread position:39-332
               
               
               Cow position:chr21:7768724-7768426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):48, 31

               
               
               Conread position:39-374
               
               
               Cow position:chr21:24296480-24296811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):22, 260

               
               
               Conread position:39-378
               
               
               Cow position:chr21:22193812-22194166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):115, 14

               
               
               Conread position:39-383
               
               
               Cow position:chr21:16570177-16569842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):23, 56

               
               
               Conread position:39-384
               
               
               Cow position:chr21:1511569-1511231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):225, 34

               
               
               Conread position:40-271
               
               
               Cow position:chr21:2536853-2537087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):96, 221

               
               
               Conread position:40-352
               
               
               Cow position:chr21:20165920-20165613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):208, 13

               
               
               Conread position:40-382
               
               
               Cow position:chr21:3585080-3585421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):20, 145

               
               
               Conread position:43-241
               
               
               Cow position:chr21:10587205-10587404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):111, 21

               
               
               Conread position:43-384
               
               
               Cow position:chr21:7394652-7394321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):20, 63

               
               
               Conread position:46-270
               
               
               Cow position:chr21:25012355-25012135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):218, 94

               
               
               Conread position:46-351
               
               
               Cow position:chr21:37706134-37706446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:46-369
               
               
               Cow position:chr21:11678046-11678350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):218, 7

               
               
               Conread position:46-384
               
               
               Cow position:chr21:12461691-12462030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 95

               
               
               Conread position:46-384
               
               
               Cow position:chr21:47464843-47465181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 11

               
               
               Conread position:46-385
               
               
               Cow position:chr21:38449176-38449509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):218, 11

               
               
               Conread position:47-220
               
               
               Cow position:chr21:16119883-16120057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:47-255
               
               
               Cow position:chr21:13883753-13883550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):145, 39

               
               
               Conread position:47-348
               
               
               Cow position:chr21:47761046-47760745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):76, 17

               
               
               Conread position:47-384
               
               
               Cow position:chr21:15545084-15545430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 113

               
               
               Conread position:47-384
               
               
               Cow position:chr21:18289951-18289604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:47-384
               
               
               Cow position:chr21:42841309-42841658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):86, 323

               
               
               Conread position:47-384
               
               
               Cow position:chr21:44251566-44251895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 17

               
               
               Conread position:48-220
               
               
               Cow position:chr21:32272205-32272024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:48-234
               
               
               Cow position:chr21:6042064-6041877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):96, 175

               
               
               Conread position:48-252
               
               
               Cow position:chr21:4109052-4108847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):101, 79

               
               
               Conread position:48-272
               
               
               Cow position:chr21:36763337-36763112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):211, 0

               
               
               Conread position:48-351
               
               
               Cow position:chr21:14027344-14027027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):13, 143

               
               
               Conread position:48-373
               
               
               Cow position:chr21:17638169-17637856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):134, 16

               
               
               Conread position:48-373
               
               
               Cow position:chr21:19059817-19060136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:48-378
               
               
               Cow position:chr21:13034761-13035094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):98, 16

               
               
               Conread position:48-384
               
               
               Cow position:chr21:18155290-18155630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:48-397
               
               
               Cow position:chr21:49699763-49700107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:49-378
               
               
               Cow position:chr21:47713733-47714057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):78, 123

               
               
               Conread position:49-383
               
               
               Cow position:chr21:34007-33661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):87, 256

               
               
               Conread position:49-383
               
               
               Cow position:chr21:938297-937975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:49-384
               
               
               Cow position:chr21:47321-46977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:241
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):89, 132

               
               
               Conread position:49-384
               
               
               Cow position:chr21:957943-957612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 96

               
               
               Conread position:50-212
               
               
               Cow position:chr21:29011704-29011861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):156, 7

               
               
               Conread position:50-224
               
               
               Cow position:chr21:18495488-18495321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:50-225
               
               
               Cow position:chr21:18055856-18056030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):136, 95

               
               
               Conread position:50-230
               
               
               Cow position:chr21:44732769-44732949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):16, 173

               
               
               Conread position:50-231
               
               
               Cow position:chr21:3135594-3135776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 45

               
               
               Conread position:50-241
               
               
               Cow position:chr21:16797125-16796934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):99, 41

               
               
               Conread position:50-244
               
               
               Cow position:chr21:27744303-27744105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:50-249
               
               
               Cow position:chr21:10138214-10138010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 131

               
               
               Conread position:50-251
               
               
               Cow position:chr21:6292022-6291819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:50-252
               
               
               Cow position:chr21:745443-745247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:50-252
               
               
               Cow position:chr21:13090651-13090446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:50-282
               
               
               Cow position:chr21:27677756-27677523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):94, 140

               
               
               Conread position:50-285
               
               
               Cow position:chr21:17403574-17403812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:50-297
               
               
               Cow position:chr21:31279525-31279281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):214, 7

               
               
               Conread position:50-297
               
               
               Cow position:chr21:31652659-31652414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:50-304
               
               
               Cow position:chr21:36682600-36682343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):11, 71

               
               
               Conread position:50-326
               
               
               Cow position:chr21:7393998-7394287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):64, 182

               
               
               Conread position:50-332
               
               
               Cow position:chr21:7169962-7169677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:50-361
               
               
               Cow position:chr21:10656828-10657139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):97, 135

               
               
               Conread position:50-364
               
               
               Cow position:chr21:45835117-45835442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):135, 102

               
               
               Conread position:50-378
               
               
               Cow position:chr21:23979906-23980234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):96, 137

               
               
               Conread position:50-380
               
               
               Cow position:chr21:16604041-16604363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):102, 126

               
               
               Conread position:50-383
               
               
               Cow position:chr21:6834322-6833989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):108, 14

               
               
               Conread position:50-383
               
               
               Cow position:chr21:30222615-30222285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 78

               
               
               Conread position:50-383
               
               
               Cow position:chr21:34654344-34654018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 90

               
               
               Conread position:50-384
               
               
               Cow position:chr21:9416519-9416186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):49, 35

               
               
               Conread position:50-384
               
               
               Cow position:chr21:9477437-9477102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):116, 142

               
               
               Conread position:50-384
               
               
               Cow position:chr21:11027086-11027414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):104, 15

               
               
               Conread position:50-384
               
               
               Cow position:chr21:16915055-16914715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 138

               
               
               Conread position:50-384
               
               
               Cow position:chr21:20262074-20262393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):136, 42

               
               
               Conread position:50-384
               
               
               Cow position:chr21:33982541-33982865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 77

               
               
               Conread position:50-384
               
               
               Cow position:chr21:34010123-34010456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):80, 112

               
               
               Conread position:50-384
               
               
               Cow position:chr21:38901037-38900718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):16, 78

               
               
               Conread position:50-384
               
               
               Cow position:chr21:39403256-39403597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):209, 7

               
               
               Conread position:50-384
               
               
               Cow position:chr21:42501325-42500977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:50-385
               
               
               Cow position:chr21:27810665-27810347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):94, 175

               
               
               Conread position:50-386
               
               
               Cow position:chr21:16152713-16152375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):115, 95

               
               
               Conread position:51-198
               
               
               Cow position:chr21:13488827-13488678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:51-332
               
               
               Cow position:chr21:47383277-47383570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):171, 67

               
               
               Conread position:51-382
               
               
               Cow position:chr21:6713253-6713583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 6

               
               
               Conread position:51-382
               
               
               Cow position:chr21:40432736-40432391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):75, 252

               
               
               Conread position:52-222
               
               
               Cow position:chr21:5789629-5789464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:52-282
               
               
               Cow position:chr21:39394019-39393789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:52-299
               
               
               Cow position:chr21:48334514-48334764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):63, 102

               
               
               Conread position:52-380
               
               
               Cow position:chr21:10673381-10673073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):112, 74

               
               
               Conread position:52-384
               
               
               Cow position:chr21:643591-643268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 33

               
               
               Conread position:53-265
               
               
               Cow position:chr21:8506277-8506487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:53-265
               
               
               Cow position:chr21:8509165-8509375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:53-272
               
               
               Cow position:chr21:9905592-9905798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):207, 59

               
               
               Conread position:53-282
               
               
               Cow position:chr21:20163978-20163749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):27, 52

               
               
               Conread position:53-301
               
               
               Cow position:chr21:6851436-6851195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):7, 91

               
               
               Conread position:53-324
               
               
               Cow position:chr21:36508500-36508241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):211, 38

               
               
               Conread position:53-328
               
               
               Cow position:chr21:44565458-44565724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:53-330
               
               
               Cow position:chr21:46132863-46132569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):13, 247

               
               
               Conread position:53-365
               
               
               Cow position:chr21:40589210-40589526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:53-366
               
               
               Cow position:chr21:41617470-41617782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:53-367
               
               
               Cow position:chr21:742545-742245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 91

               
               
               Conread position:53-378
               
               
               Cow position:chr21:641854-641532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 69

               
               
               Conread position:53-378
               
               
               Cow position:chr21:5238658-5238332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):118, 73

               
               
               Conread position:53-378
               
               
               Cow position:chr21:10007367-10007689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):94, 122

               
               
               Conread position:53-379
               
               
               Cow position:chr21:25345134-25344817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):80, 131

               
               
               Conread position:53-383
               
               
               Cow position:chr21:19703000-19702665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):187, 74

               
               
               Conread position:53-384
               
               
               Cow position:chr21:6051775-6051447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 242

               
               
               Conread position:53-384
               
               
               Cow position:chr21:7673383-7673066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):211, 83

               
               
               Conread position:53-384
               
               
               Cow position:chr21:12154396-12154077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):13, 90

               
               
               Conread position:53-384
               
               
               Cow position:chr21:20260026-20260381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:53-384
               
               
               Cow position:chr21:40899611-40899280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):84, 63

               
               
               Conread position:53-384
               
               
               Cow position:chr21:45970909-45971233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):188, 89

               
               
               Conread position:53-384
               
               
               Cow position:chr21:46848861-46849186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):8, 90

               
               
               Conread position:53-385
               
               
               Cow position:chr21:33996980-33997288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):211, 52

               
               
               Conread position:54-252
               
               
               Cow position:chr21:8986295-8986094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):90, 181

               
               
               Conread position:54-270
               
               
               Cow position:chr21:11182818-11182606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):211, 53

               
               
               Conread position:54-272
               
               
               Cow position:chr21:40291480-40291695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):179, 91

               
               
               Conread position:54-382
               
               
               Cow position:chr21:28733643-28733970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):100, 29

               
               
               Conread position:54-382
               
               
               Cow position:chr21:32339476-32339796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):210, 71

               
               
               Conread position:54-384
               
               
               Cow position:chr21:5898140-5898459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):210, 25

               
               
               Conread position:54-384
               
               
               Cow position:chr21:29978491-29978816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):18, 78

               
               
               Conread position:54-384
               
               
               Cow position:chr21:44214380-44214064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 85

               
               
               Conread position:55-227
               
               
               Cow position:chr21:43655970-43655799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):86, 97

               
               
               Conread position:55-273
               
               
               Cow position:chr21:700521-700742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):92, 121

               
               
               Conread position:55-325
               
               
               Cow position:chr21:13589030-13588761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):99, 122

               
               
               Conread position:55-352
               
               
               Cow position:chr21:13584784-13585084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):78, 212

               
               
               Conread position:55-374
               
               
               Cow position:chr21:41522145-41522457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:55-384
               
               
               Cow position:chr21:37480232-37479899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 90

               
               
               Conread position:56-289
               
               
               Cow position:chr21:41610446-41610201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:56-347
               
               
               Cow position:chr21:71853-71561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 89

               
               
               Conread position:56-378
               
               
               Cow position:chr21:37789735-37790054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):108, 70

               
               
               Conread position:56-384
               
               
               Cow position:chr21:27568892-27569220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):88, 178

               
               
               Conread position:56-384
               
               
               Cow position:chr21:46264458-46264112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 214

               
               
               Conread position:57-172
               
               
               Cow position:chr21:41668894-41668781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:57-200
               
               
               Cow position:chr21:37479324-37479469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:57-203
               
               
               Cow position:chr21:11761828-11761684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:57-218
               
               
               Cow position:chr21:39845868-39845699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:57-230
               
               
               Cow position:chr21:21159069-21158905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:57-230
               
               
               Cow position:chr21:29418839-29418662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:57-235
               
               
               Cow position:chr21:45376213-45376040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:57-238
               
               
               Cow position:chr21:10576502-10576321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):109, 135

               
               
               Conread position:57-262
               
               
               Cow position:chr21:20174578-20174380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:57-281
               
               
               Cow position:chr21:13674384-13674610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):92, 35

               
               
               Conread position:57-282
               
               
               Cow position:chr21:16498781-16498560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):207, 88

               
               
               Conread position:57-322
               
               
               Cow position:chr21:12104619-12104366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):170, 88

               
               
               Conread position:57-332
               
               
               Cow position:chr21:21616042-21615766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):206, 34

               
               
               Conread position:57-378
               
               
               Cow position:chr21:5427193-5426887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):207, 65

               
               
               Conread position:57-381
               
               
               Cow position:chr21:868653-868982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 263

               
               
               Conread position:57-381
               
               
               Cow position:chr21:41590300-41590617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 95

               
               
               Conread position:57-383
               
               
               Cow position:chr21:29213893-29214210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 22

               
               
               Conread position:57-384
               
               
               Cow position:chr21:8207023-8206712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):218, 70

               
               
               Conread position:57-384
               
               
               Cow position:chr21:11739855-11740176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 12

               
               
               Conread position:57-384
               
               
               Cow position:chr21:19195893-19196223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):16, 134

               
               
               Conread position:57-384
               
               
               Cow position:chr21:23587138-23586820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):207, 65

               
               
               Conread position:57-385
               
               
               Cow position:chr21:12339883-12339578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):207, 34

               
               
               Conread position:58-238
               
               
               Cow position:chr21:8924636-8924455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):91, 50

               
               
               Conread position:58-238
               
               
               Cow position:chr21:41738173-41737994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 57

               
               
               Conread position:58-271
               
               
               Cow position:chr21:40820586-40820801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):76, 112

               
               
               Conread position:58-298
               
               
               Cow position:chr21:17252712-17252954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):88, 175

               
               
               Conread position:58-316
               
               
               Cow position:chr21:17519293-17519036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):86, 223

               
               
               Conread position:58-339
               
               
               Cow position:chr21:44724111-44724380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):108, 84

               
               
               Conread position:58-360
               
               
               Cow position:chr21:42209380-42209667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):206, 61

               
               
               Conread position:58-366
               
               
               Cow position:chr21:19067798-19067492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):86, 121

               
               
               Conread position:58-384
               
               
               Cow position:chr21:5970581-5970899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):106, 68

               
               
               Conread position:58-384
               
               
               Cow position:chr21:10817299-10816962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):89, 129

               
               
               Conread position:58-384
               
               
               Cow position:chr21:14452498-14452176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:58-384
               
               
               Cow position:chr21:45906356-45906681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):93, 117

               
               
               Conread position:58-387
               
               
               Cow position:chr21:4400058-4399740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):247, 62

               
               
               Conread position:59-231
               
               
               Cow position:chr21:19220531-19220705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):97, 128

               
               
               Conread position:59-238
               
               
               Cow position:chr21:15305031-15305213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 120

               
               
               Conread position:59-238
               
               
               Cow position:chr21:22005639-22005817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):97, 21

               
               
               Conread position:59-268
               
               
               Cow position:chr21:31658890-31659091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):112, 67

               
               
               Conread position:59-273
               
               
               Cow position:chr21:13580679-13580463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):95, 118

               
               
               Conread position:59-300
               
               
               Cow position:chr21:42328397-42328642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):72, 129

               
               
               Conread position:59-305
               
               
               Cow position:chr21:8713693-8713942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:59-332
               
               
               Cow position:chr21:10148263-10147983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):97, 123

               
               
               Conread position:59-332
               
               
               Cow position:chr21:38918466-38918195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):90, 162

               
               
               Conread position:59-350
               
               
               Cow position:chr21:8950457-8950153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):102, 67

               
               
               Conread position:59-364
               
               
               Cow position:chr21:48527680-48527370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):61, 133

               
               
               Conread position:59-368
               
               
               Cow position:chr21:33580675-33580377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):105, 51

               
               
               Conread position:59-382
               
               
               Cow position:chr21:3763487-3763799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):201, 32

               
               
               Conread position:59-383
               
               
               Cow position:chr21:28244731-28244410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):205, 75

               
               
               Conread position:59-383
               
               
               Cow position:chr21:28919267-28919582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):207, 63

               
               
               Conread position:59-383
               
               
               Cow position:chr21:41140451-41140777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):87, 119

               
               
               Conread position:59-383
               
               
               Cow position:chr21:41156135-41155804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):99, 117

               
               
               Conread position:59-384
               
               
               Cow position:chr21:10070659-10070994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):62, 121

               
               
               Conread position:59-384
               
               
               Cow position:chr21:15584159-15584479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:59-384
               
               
               Cow position:chr21:17512038-17511717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):105, 47

               
               
               Conread position:59-384
               
               
               Cow position:chr21:17559652-17559989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):89, 132

               
               
               Conread position:59-384
               
               
               Cow position:chr21:40134410-40134100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):101, 64

               
               
               Conread position:60-213
               
               
               Cow position:chr21:19236705-19236859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):87, 131

               
               
               Conread position:60-249
               
               
               Cow position:chr21:36115870-36115678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):89, 128

               
               
               Conread position:60-264
               
               
               Cow position:chr21:30658124-30657930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:60-294
               
               
               Cow position:chr21:19868699-19868925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):204, 66

               
               
               Conread position:60-308
               
               
               Cow position:chr21:16794057-16793806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):132, 94

               
               
               Conread position:60-332
               
               
               Cow position:chr21:674931-674676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):204, 80

               
               
               Conread position:60-338
               
               
               Cow position:chr21:802060-802321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):37, 68

               
               
               Conread position:60-368
               
               
               Cow position:chr21:18568374-18568686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):96, 110

               
               
               Conread position:60-376
               
               
               Cow position:chr21:20153220-20152902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):89, 115

               
               
               Conread position:60-378
               
               
               Cow position:chr21:23535976-23535660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):39, 136

               
               
               Conread position:60-382
               
               
               Cow position:chr21:13656371-13656687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):122, 98

               
               
               Conread position:60-383
               
               
               Cow position:chr21:23568488-23568161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):105, 78

               
               
               Conread position:60-384
               
               
               Cow position:chr21:82322-82019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):204, 45

               
               
               Conread position:60-384
               
               
               Cow position:chr21:8426706-8426381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 82

               
               
               Conread position:60-384
               
               
               Cow position:chr21:9311318-9310984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:60-384
               
               
               Cow position:chr21:10264298-10263973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):77, 119

               
               
               Conread position:60-384
               
               
               Cow position:chr21:12916155-12916486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):89, 118

               
               
               Conread position:60-384
               
               
               Cow position:chr21:17874927-17875252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):69, 60

               
               
               Conread position:60-384
               
               
               Cow position:chr21:27229540-27229854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 72

               
               
               Conread position:60-384
               
               
               Cow position:chr21:30592051-30592364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):203, 64

               
               
               Conread position:60-384
               
               
               Cow position:chr21:31253797-31253483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):18, 92

               
               
               Conread position:60-384
               
               
               Cow position:chr21:41621391-41621064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):97, 130

               
               
               Conread position:60-384
               
               
               Cow position:chr21:48233913-48234220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):116, 33

               
               
               Conread position:60-422
               
               
               Cow position:chr21:17890566-17890205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 225

               
               
               Conread position:61-231
               
               
               Cow position:chr21:40930214-40930382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:61-348
               
               
               Cow position:chr21:14126534-14126264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):244, 67

               
               
               Conread position:61-348
               
               
               Cow position:chr21:28030541-28030264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 34

               
               
               Conread position:61-368
               
               
               Cow position:chr21:13842755-13842444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):83, 118

               
               
               Conread position:61-384
               
               
               Cow position:chr21:11644704-11645030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 86

               
               
               Conread position:61-384
               
               
               Cow position:chr21:22718521-22718839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):88, 51

               
               
               Conread position:61-384
               
               
               Cow position:chr21:29069061-29069389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:61-384
               
               
               Cow position:chr21:44658823-44658522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):201, 60

               
               
               Conread position:62-272
               
               
               Cow position:chr21:24797916-24797708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):202, 163

               
               
               Conread position:62-285
               
               
               Cow position:chr21:46809503-46809733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 52

               
               
               Conread position:62-345
               
               
               Cow position:chr21:18318974-18318692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):75, 116

               
               
               Conread position:62-351
               
               
               Cow position:chr21:36695829-36696117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):82, 29

               
               
               Conread position:62-376
               
               
               Cow position:chr21:36910998-36910688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):111, 69

               
               
               Conread position:62-384
               
               
               Cow position:chr21:8349583-8349268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):202, 30

               
               
               Conread position:62-384
               
               
               Cow position:chr21:24858577-24858255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 233

               
               
               Conread position:63-245
               
               
               Cow position:chr21:7460865-7460686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:63-271
               
               
               Cow position:chr21:28907289-28907492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):134, 58

               
               
               Conread position:63-294
               
               
               Cow position:chr21:24875612-24875381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):167, 69

               
               
               Conread position:63-368
               
               
               Cow position:chr21:29014657-29014957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):103, 78

               
               
               Conread position:63-383
               
               
               Cow position:chr21:23673005-23672693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):206, 42

               
               
               Conread position:64-326
               
               
               Cow position:chr21:12739347-12739077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 75

               
               
               Conread position:64-361
               
               
               Cow position:chr21:46599617-46599324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:214
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):200, 97

               
               
               Conread position:64-378
               
               
               Cow position:chr21:5465006-5464693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):200, 92

               
               
               Conread position:64-383
               
               
               Cow position:chr21:42135360-42135679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 64

               
               
               Conread position:64-384
               
               
               Cow position:chr21:15543980-15544278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):220, 30

               
               
               Conread position:64-384
               
               
               Cow position:chr21:24598902-24598601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):179, 27

               
               
               Conread position:64-384
               
               
               Cow position:chr21:30848689-30849008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):200, 87

               
               
               Conread position:67-378
               
               
               Cow position:chr21:31691728-31691428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:68-230
               
               
               Cow position:chr21:37495689-37495852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):86, 55

               
               
               Conread position:68-383
               
               
               Cow position:chr21:23822407-23822108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):79, 116

               
               
               Conread position:68-384
               
               
               Cow position:chr21:8351039-8351363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):159, 77

               
               
               Conread position:68-384
               
               
               Cow position:chr21:30835621-30835302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 115

               
               
               Conread position:68-395
               
               
               Cow position:chr21:20160933-20160604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 25

               
               
               Conread position:69-327
               
               
               Cow position:chr21:19240624-19240880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):195, 41

               
               
               Conread position:71-362
               
               
               Cow position:chr21:10883666-10883962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:71-364
               
               
               Cow position:chr21:24266309-24266600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):73, 108

               
               
               Conread position:72-252
               
               
               Cow position:chr21:18783215-18783397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):100, 115

               
               
               Conread position:72-255
               
               
               Cow position:chr21:42017350-42017534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:72-267
               
               
               Cow position:chr21:19161966-19161768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):77, 115

               
               
               Conread position:72-294
               
               
               Cow position:chr21:11625997-11625772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):72, 105

               
               
               Conread position:72-322
               
               
               Cow position:chr21:41287545-41287793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):190, 69

               
               
               Conread position:72-348
               
               
               Cow position:chr21:6317434-6317704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):74, 115

               
               
               Conread position:72-371
               
               
               Cow position:chr21:34151827-34151537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):192, 25

               
               
               Conread position:72-373
               
               
               Cow position:chr21:30231445-30231740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):191, 72

               
               
               Conread position:72-377
               
               
               Cow position:chr21:28237448-28237763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):72, 149

               
               
               Conread position:72-378
               
               
               Cow position:chr21:17193497-17193807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:72-384
               
               
               Cow position:chr21:14760808-14760513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):202, 33

               
               
               Conread position:72-385
               
               
               Cow position:chr21:10114082-10114394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):56, 94

               
               
               Conread position:73-289
               
               
               Cow position:chr21:7066135-7066347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):93, 69

               
               
               Conread position:74-382
               
               
               Cow position:chr21:7824941-7825235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):104, 71

               
               
               Conread position:74-384
               
               
               Cow position:chr21:3360767-3361072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):140, 79

               
               
               Conread position:74-384
               
               
               Cow position:chr21:10561336-10561644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):192, 78

               
               
               Conread position:75-376
               
               
               Cow position:chr21:10410471-10410168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):50, 88

               
               
               Conread position:78-373
               
               
               Cow position:chr21:46912795-46912491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):10, 110

               
               
               Conread position:79-216
               
               
               Cow position:chr21:7424769-7424906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:79-368
               
               
               Cow position:chr21:41198153-41198448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):75, 12

               
               
               Conread position:80-247
               
               
               Cow position:chr21:19014632-19014801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):76, 109

               
               
               Conread position:80-341
               
               
               Cow position:chr21:828967-829227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 65

               
               
               Conread position:80-388
               
               
               Cow position:chr21:10292737-10292425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):70, 61

               
               
               Conread position:82-384
               
               
               Cow position:chr21:19767105-19766794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):24, 114

               
               
               Conread position:83-378
               
               
               Cow position:chr21:9036541-9036245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):58, 25

               
               
               Conread position:86-378
               
               
               Cow position:chr21:6624396-6624106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 100

               
               
               Conread position:87-355
               
               
               Cow position:chr21:7377687-7377958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 97

               
               
               Conread position:87-376
               
               
               Cow position:chr21:9697842-9698135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):60, 88

               
               
               Conread position:97-252
               
               
               Cow position:chr21:9346652-9346494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:98-267
               
               
               Cow position:chr21:13043800-13043963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:98-275
               
               
               Cow position:chr21:30243460-30243633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):165, 48

               
               
               Conread position:98-367
               
               
               Cow position:chr21:4904739-4905009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 184

               
               
               Conread position:98-378
               
               
               Cow position:chr21:42007234-42007517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 166

               
               
               Conread position:98-384
               
               
               Cow position:chr21:19259041-19258769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):166, 47

               
               
               Conread position:102-392
               
               
               Cow position:chr21:4280454-4280739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:105-378
               
               
               Cow position:chr21:41579973-41579702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):157, 11

               
               
               Conread position:105-384
               
               
               Cow position:chr21:21169275-21169555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):42, 129

               
               
               Conread position:107-378
               
               
               Cow position:chr21:976924-977198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):64, 189

               
               
               Conread position:107-379
               
               
               Cow position:chr21:27145772-27146044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:107-387
               
               
               Cow position:chr21:9990727-9990453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):85, 71

               
               
               Conread position:117-384
               
               
               Cow position:chr21:36297702-36297430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):6, 37

               
               
               Conread position:125-384
               
               
               Cow position:chr21:33264041-33263789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):141, 22

               
               
               Conread position:128-287
               
               
               Cow position:chr21:5486317-5486478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 18

               
               
               Conread position:128-319
               
               
               Cow position:chr21:11057685-11057870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):135, 91

               
               
               Conread position:128-355
               
               
               Cow position:chr21:734785-734565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):136, 78

               
               
               Conread position:128-361
               
               
               Cow position:chr21:29014364-29014597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):136, 23

               
               
               Conread position:128-379
               
               
               Cow position:chr21:23321884-23322131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-384
               
               
               Cow position:chr21:7581711-7581966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-384
               
               
               Cow position:chr21:18800340-18800589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):112, 24

               
               
               Conread position:128-384
               
               
               Cow position:chr21:27624893-27624649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:128-384
               
               
               Cow position:chr21:29485174-29484919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 92

               
               
               Conread position:128-384
               
               
               Cow position:chr21:30250008-30250250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:128-384
               
               
               Cow position:chr21:36795799-36795540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):136, 155

               
               
               Conread position:128-385
               
               
               Cow position:chr21:5392339-5392601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):107, 156

               
               
               Conread position:129-314
               
               
               Cow position:chr21:19359983-19360167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:129-376
               
               
               Cow position:chr21:3818401-3818157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):135, 30

               
               
               Conread position:129-378
               
               
               Cow position:chr21:10633446-10633694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):138, 45

               
               
               Conread position:129-380
               
               
               Cow position:chr21:43259412-43259166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):135, 32

               
               
               Conread position:129-381
               
               
               Cow position:chr21:13127904-13128151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 48

               
               
               Conread position:129-384
               
               
               Cow position:chr21:13365537-13365278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):25, 12

               
               
               Conread position:129-384
               
               
               Cow position:chr21:42384706-42384449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):15, 175

               
               
               Conread position:129-388
               
               
               Cow position:chr21:42413901-42414164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):15, 158

               
               
               Conread position:131-272
               
               
               Cow position:chr21:5149393-5149247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:131-280
               
               
               Cow position:chr21:5341900-5342051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:131-348
               
               
               Cow position:chr21:10538062-10538274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):133, 169

               
               
               Conread position:131-379
               
               
               Cow position:chr21:36910124-36909880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:131-383
               
               
               Cow position:chr21:28924301-28924055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):133, 16

               
               
               Conread position:131-384
               
               
               Cow position:chr21:18790375-18790620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):249, 28

               
               
               Conread position:131-387
               
               
               Cow position:chr21:33350934-33350683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):133, 158

               
               
               Conread position:132-327
               
               
               Cow position:chr21:9027509-9027309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 38

               
               
               Conread position:132-332
               
               
               Cow position:chr21:30980386-30980586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):132, 89

               
               
               Conread position:132-369
               
               
               Cow position:chr21:45473567-45473797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):132, 19

               
               
               Conread position:132-383
               
               
               Cow position:chr21:45920867-45921117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:132-384
               
               
               Cow position:chr21:12801555-12801807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):104, 219

               
               
               Conread position:132-384
               
               
               Cow position:chr21:15976822-15976572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):60, 15

               
               
               Conread position:132-384
               
               
               Cow position:chr21:26245106-26244860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):132, 161

               
               
               Conread position:132-384
               
               
               Cow position:chr21:41598003-41597759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):60, 50

               
               
               Conread position:134-383
               
               
               Cow position:chr21:28989804-28989555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 75

               
               
               Conread position:134-384
               
               
               Cow position:chr21:28626425-28626180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:135-384
               
               
               Cow position:chr21:33563190-33562953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):129, 17

               
               
               Conread position:136-384
               
               
               Cow position:chr21:1059262-1059017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):163, 15

               
               
               Conread position:136-384
               
               
               Cow position:chr21:22465376-22465137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):194, 16

               
               
               Conread position:136-384
               
               
               Cow position:chr21:47763930-47764175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):130, 51

               
               
               Conread position:141-332
               
               
               Cow position:chr21:41046989-41046796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):126, 91

               
               
               Conread position:146-282
               
               
               Cow position:chr21:46451776-46451911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:146-382
               
               
               Cow position:chr21:396045-395812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):25, 38

               
               
               Conread position:146-383
               
               
               Cow position:chr21:25764813-25764579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):118, 52

               
               
               Conread position:146-384
               
               
               Cow position:chr21:10001253-10001014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):71, 82

               
               
               Conread position:146-384
               
               
               Cow position:chr21:28191210-28190972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):118, 86

               
               
               Conread position:146-384
               
               
               Cow position:chr21:28442910-28442686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):45, 36

               
               
               Conread position:147-383
               
               
               Cow position:chr21:33210366-33210143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):11, 131

               
               
               Conread position:147-384
               
               
               Cow position:chr21:12723328-12723100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):117, 74

               
               
               Conread position:147-384
               
               
               Cow position:chr21:45262633-45262872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 178

               
               
               Conread position:148-364
               
               
               Cow position:chr21:471850-471637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):116, 35

               
               
               Conread position:148-384
               
               
               Cow position:chr21:724703-724946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):37, 85

               
               
               Conread position:148-384
               
               
               Cow position:chr21:30990111-30990330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):116, 68

               
               
               Conread position:151-382
               
               
               Cow position:chr21:35900016-35899786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):7, 84

               
               
               Conread position:152-283
               
               
               Cow position:chr21:31147763-31147894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:152-384
               
               
               Cow position:chr21:15911572-15911339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):112, 73

               
               
               Conread position:152-384
               
               
               Cow position:chr21:38121273-38121041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):112, 183

               
               
               Conread position:153-347
               
               
               Cow position:chr21:37235556-37235362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):111, 158

               
               
               Conread position:153-383
               
               
               Cow position:chr21:297925-297694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):111, 194

               
               
               Conread position:154-384
               
               
               Cow position:chr21:35354703-35354473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):30, 117

               
               
               Conread position:155-383
               
               
               Cow position:chr21:46551933-46552165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):16, 41

               
               
               Conread position:155-384
               
               
               Cow position:chr21:8235393-8235612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):109, 67

               
               
               Conread position:155-384
               
               
               Cow position:chr21:45356002-45355776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):109, 117

               
               
               Conread position:156-342
               
               
               Cow position:chr21:47160386-47160199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):106, 159

               
               
               Conread position:156-383
               
               
               Cow position:chr21:2679716-2679497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):109, 12

               
               
               Conread position:156-384
               
               
               Cow position:chr21:31662635-31662404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):144, 167

               
               
               Conread position:157-384
               
               
               Cow position:chr21:9940023-9940254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):107, 19

               
               
               Conread position:159-382
               
               
               Cow position:chr21:36789961-36789739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 203

               
               
               Conread position:161-348
               
               
               Cow position:chr21:40192141-40192325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:162-331
               
               
               Cow position:chr21:20183233-20183064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):102, 122

               
               
               Conread position:163-366
               
               
               Cow position:chr21:37344941-37345139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:163-383
               
               
               Cow position:chr21:20418521-20418744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):104, 129

               
               
               Conread position:167-384
               
               
               Cow position:chr21:19363303-19363523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):97, 16

               
               
               Conread position:168-384
               
               
               Cow position:chr21:18844856-18845075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:169-378
               
               
               Cow position:chr21:45330452-45330655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:173-381
               
               
               Cow position:chr21:16187656-16187865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:164
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):91, 115

               
               
               Conread position:174-282
               
               
               Cow position:chr21:7088750-7088641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:174-344
               
               
               Cow position:chr21:42540072-42540242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):90, 150

               
               
               Conread position:174-366
               
               
               Cow position:chr21:41878619-41878429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):90, 24

               
               
               Conread position:174-384
               
               
               Cow position:chr21:39401740-39401534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):100, 32

               
               
               Conread position:179-384
               
               
               Cow position:chr21:34390830-34391035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):86, 114

               
               
               Conread position:180-384
               
               
               Cow position:chr21:1591698-1591492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:180-410
               
               
               Cow position:chr21:30606942-30607176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):28, 193

               
               
               Conread position:187-384
               
               
               Cow position:chr21:18415189-18414990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 57

               
               
               Conread position:190-378
               
               
               Cow position:chr21:24642654-24642466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):74, 32

               
               
               Conread position:190-384
               
               
               Cow position:chr21:10601241-10601434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):74, 98

               
               
               Conread position:190-384
               
               
               Cow position:chr21:11360169-11359979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):74, 15

               
               
               Conread position:190-384
               
               
               Cow position:chr21:20193028-20192837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):75, 32

               
               
               Conread position:190-384
               
               
               Cow position:chr21:44515398-44515203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):74, 98

               
               
               Conread position:192-380
               
               
               Cow position:chr21:46144091-46143903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):72, 93

               
               
               Conread position:192-384
               
               
               Cow position:chr21:43357124-43357321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):52, 58

               
               
               Conread position:194-384
               
               
               Cow position:chr21:11198018-11198209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 96

               
               
               Conread position:194-384
               
               
               Cow position:chr21:13488657-13488462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:155
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:194-384
               
               
               Cow position:chr21:17009111-17008921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 161

               
               
               Conread position:195-422
               
               
               Cow position:chr21:17929708-17929942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:196-384
               
               
               Cow position:chr21:23192381-23192574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:196-414
               
               
               Cow position:chr21:37384611-37384395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):63, 92

               
               
               Conread position:198-384
               
               
               Cow position:chr21:17856670-17856487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):64, 168

               
               
               Conread position:198-384
               
               
               Cow position:chr21:33359917-33360094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 11

               
               
               Conread position:205-384
               
               
               Cow position:chr21:23149902-23150081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):97, 150

               
               
               Conread position:206-384
               
               
               Cow position:chr21:37014288-37014463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 81

               
               
               Conread position:213-384
               
               
               Cow position:chr21:6102151-6102319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):51, 14

               
               
               Conread position:216-384
               
               
               Cow position:chr21:2904370-2904533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 101

               
               
               Conread position:223-384
               
               
               Cow position:chr21:4795327-4795167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):77, 107

               
               
               Conread position:229-383
               
               
               Cow position:chr21:18041752-18041907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:237-384
               
               
               Cow position:chr21:16612712-16612565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 115

               
               
               Conread position:1-216
               
               
               Cow position:chr22:19306160-19305939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):62, 36

               
               
               Conread position:1-219
               
               
               Cow position:chr22:10594868-10594646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1-274
               
               
               Cow position:chr22:24071400-24071664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):42, 93

               
               
               Conread position:1-366
               
               
               Cow position:chr22:39215357-39215725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):145, 291

               
               
               Conread position:1-379
               
               
               Cow position:chr22:28665540-28665164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):17, 26

               
               
               Conread position:2-328
               
               
               Cow position:chr22:21527159-21526848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):262, 48

               
               
               Conread position:2-384
               
               
               Cow position:chr22:16291676-16292044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:264
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):18, 143

               
               
               Conread position:3-244
               
               
               Cow position:chr22:16872616-16872854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):131, 46

               
               
               Conread position:3-246
               
               
               Cow position:chr22:3257411-3257650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 112

               
               
               Conread position:3-382
               
               
               Cow position:chr22:7882801-7882429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 20

               
               
               Conread position:3-384
               
               
               Cow position:chr22:3325841-3325457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):63, 126

               
               
               Conread position:3-384
               
               
               Cow position:chr22:5016740-5016385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):371, 47

               
               
               Conread position:3-384
               
               
               Cow position:chr22:37066561-37066921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):243, 16

               
               
               Conread position:4-281
               
               
               Cow position:chr22:30253471-30253175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):48, 76

               
               
               Conread position:5-238
               
               
               Cow position:chr22:10660130-10659900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 26

               
               
               Conread position:5-348
               
               
               Cow position:chr22:17652680-17652342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 48

               
               
               Conread position:5-382
               
               
               Cow position:chr22:4583809-4583433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 20

               
               
               Conread position:7-281
               
               
               Cow position:chr22:19645357-19645618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):48, 121

               
               
               Conread position:7-384
               
               
               Cow position:chr22:3250732-3251120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 49

               
               
               Conread position:7-397
               
               
               Cow position:chr22:25236885-25237288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:281
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):19, 43

               
               
               Conread position:8-377
               
               
               Cow position:chr22:18196761-18196394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):44, 81

               
               
               Conread position:9-244
               
               
               Cow position:chr22:2704544-2704311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:9-384
               
               
               Cow position:chr22:4357326-4356967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:262
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):21, 47

               
               
               Conread position:10-257
               
               
               Cow position:chr22:45683788-45684038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):118, 105

               
               
               Conread position:10-384
               
               
               Cow position:chr22:16273881-16273507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:258
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):159, 21

               
               
               Conread position:11-230
               
               
               Cow position:chr22:1074510-1074291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):130, 31

               
               
               Conread position:11-255
               
               
               Cow position:chr22:35578531-35578775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):135, 160

               
               
               Conread position:11-384
               
               
               Cow position:chr22:18926602-18926228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:262
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:12-341
               
               
               Cow position:chr22:26056622-26056954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):10, 75

               
               
               Conread position:12-383
               
               
               Cow position:chr22:6622011-6622371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:12-383
               
               
               Cow position:chr22:8877496-8877150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:253
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):10, 171

               
               
               Conread position:13-384
               
               
               Cow position:chr22:3367441-3367064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):22, 284

               
               
               Conread position:17-249
               
               
               Cow position:chr22:41025996-41025764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):101, 12

               
               
               Conread position:17-378
               
               
               Cow position:chr22:5837498-5837147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):247, 39

               
               
               Conread position:17-384
               
               
               Cow position:chr22:15950158-15950506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 30

               
               
               Conread position:18-331
               
               
               Cow position:chr22:12678184-12678494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):241, 39

               
               
               Conread position:18-384
               
               
               Cow position:chr22:13286687-13286323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):37, 134

               
               
               Conread position:23-348
               
               
               Cow position:chr22:33098157-33098501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:23-384
               
               
               Cow position:chr22:16251329-16251692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):25, 204

               
               
               Conread position:25-368
               
               
               Cow position:chr22:41341722-41342056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):126, 23

               
               
               Conread position:26-366
               
               
               Cow position:chr22:10532723-10532400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):238, 101

               
               
               Conread position:26-384
               
               
               Cow position:chr22:31510128-31510495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:274
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:27-317
               
               
               Cow position:chr22:2550708-2551001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):111, 37

               
               
               Conread position:27-384
               
               
               Cow position:chr22:33485396-33485729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):16, 27

               
               
               Conread position:28-231
               
               
               Cow position:chr22:4156853-4157056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 37

               
               
               Conread position:28-241
               
               
               Cow position:chr22:9735498-9735285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):8, 120

               
               
               Conread position:28-384
               
               
               Cow position:chr22:38313243-38313592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):20, 41

               
               
               Conread position:29-282
               
               
               Cow position:chr22:4164205-4163953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 14

               
               
               Conread position:29-308
               
               
               Cow position:chr22:2100719-2100998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 113

               
               
               Conread position:29-332
               
               
               Cow position:chr22:12157623-12157918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 28

               
               
               Conread position:29-378
               
               
               Cow position:chr22:11766820-11767169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):14, 125

               
               
               Conread position:29-384
               
               
               Cow position:chr22:23979981-23980340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):135, 14

               
               
               Conread position:29-385
               
               
               Cow position:chr22:34441409-34441760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 33

               
               
               Conread position:31-223
               
               
               Cow position:chr22:16140744-16140558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):134, 23

               
               
               Conread position:31-238
               
               
               Cow position:chr22:530351-530559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 124

               
               
               Conread position:31-255
               
               
               Cow position:chr22:23630133-23630349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:31-273
               
               
               Cow position:chr22:26233863-26233616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):40, 113

               
               
               Conread position:31-321
               
               
               Cow position:chr22:15737455-15737168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):236, 54

               
               
               Conread position:31-343
               
               
               Cow position:chr22:13092964-13093281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):31, 71

               
               
               Conread position:31-366
               
               
               Cow position:chr22:9668802-9668459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):116, 22

               
               
               Conread position:31-375
               
               
               Cow position:chr22:15914823-15915160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):113, 22

               
               
               Conread position:31-378
               
               
               Cow position:chr22:38930277-38930628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:31-379
               
               
               Cow position:chr22:15618829-15618494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):115, 19

               
               
               Conread position:31-382
               
               
               Cow position:chr22:15154226-15153873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):135, 33

               
               
               Conread position:31-382
               
               
               Cow position:chr22:43131330-43131676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:31-384
               
               
               Cow position:chr22:8324475-8324122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 158

               
               
               Conread position:31-384
               
               
               Cow position:chr22:33399262-33399608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):38, 122

               
               
               Conread position:31-384
               
               
               Cow position:chr22:45808053-45807713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:247
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):325, 33

               
               
               Conread position:32-247
               
               
               Cow position:chr22:1959455-1959246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:32-249
               
               
               Cow position:chr22:1045966-1046184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:32-252
               
               
               Cow position:chr22:35533004-35533227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 197

               
               
               Conread position:32-273
               
               
               Cow position:chr22:14488159-14487918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:32-319
               
               
               Cow position:chr22:28672355-28672082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):232, 21

               
               
               Conread position:32-348
               
               
               Cow position:chr22:24903816-24903498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 121

               
               
               Conread position:32-377
               
               
               Cow position:chr22:7165190-7164841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):109, 21

               
               
               Conread position:32-377
               
               
               Cow position:chr22:19891180-19890840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):115, 17

               
               
               Conread position:32-378
               
               
               Cow position:chr22:2123512-2123174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:237
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):233, 21

               
               
               Conread position:32-378
               
               
               Cow position:chr22:7154100-7153765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 104

               
               
               Conread position:32-381
               
               
               Cow position:chr22:8883232-8882895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):134, 21

               
               
               Conread position:33-282
               
               
               Cow position:chr22:4656823-4657069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):138, 112

               
               
               Conread position:33-319
               
               
               Cow position:chr22:23440059-23440358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):24, 221

               
               
               Conread position:33-321
               
               
               Cow position:chr22:1501103-1500825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):202, 17

               
               
               Conread position:33-383
               
               
               Cow position:chr22:44410941-44410600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):24, 113

               
               
               Conread position:33-384
               
               
               Cow position:chr22:40789780-40789442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 58

               
               
               Conread position:34-238
               
               
               Cow position:chr22:29219683-29219886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 17

               
               
               Conread position:34-339
               
               
               Cow position:chr22:36589858-36590161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):18, 31

               
               
               Conread position:34-351
               
               
               Cow position:chr22:25254389-25254081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):100, 19

               
               
               Conread position:34-368
               
               
               Cow position:chr22:4108508-4108847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):120, 19

               
               
               Conread position:34-384
               
               
               Cow position:chr22:10162189-10161838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:34-384
               
               
               Cow position:chr22:12800895-12800536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):148, 30

               
               
               Conread position:34-384
               
               
               Cow position:chr22:41970931-41971284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):23, 62

               
               
               Conread position:35-271
               
               
               Cow position:chr22:14545702-14545940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):119, 29

               
               
               Conread position:35-378
               
               
               Cow position:chr22:27826067-27825718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:35-379
               
               
               Cow position:chr22:38939733-38940070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):193, 18

               
               
               Conread position:35-383
               
               
               Cow position:chr22:9372746-9372397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 29

               
               
               Conread position:35-384
               
               
               Cow position:chr22:8732343-8732684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):101, 62

               
               
               Conread position:35-384
               
               
               Cow position:chr22:11147129-11146779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:242
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):129, 29

               
               
               Conread position:36-296
               
               
               Cow position:chr22:23077260-23077532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):122, 15

               
               
               Conread position:36-378
               
               
               Cow position:chr22:8430107-8429766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):118, 17

               
               
               Conread position:36-384
               
               
               Cow position:chr22:25742743-25743078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 58

               
               
               Conread position:37-228
               
               
               Cow position:chr22:16564365-16564177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):27, 91

               
               
               Conread position:37-234
               
               
               Cow position:chr22:1928401-1928192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):16, 182

               
               
               Conread position:37-244
               
               
               Cow position:chr22:43238675-43238881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):100, 138

               
               
               Conread position:37-259
               
               
               Cow position:chr22:2633065-2632844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):100, 16

               
               
               Conread position:37-290
               
               
               Cow position:chr22:26112586-26112332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):102, 127

               
               
               Conread position:37-332
               
               
               Cow position:chr22:43704653-43704937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):107, 20

               
               
               Conread position:37-343
               
               
               Cow position:chr22:12749695-12749985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):227, 27

               
               
               Conread position:37-348
               
               
               Cow position:chr22:11696978-11697287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):102, 16

               
               
               Conread position:37-368
               
               
               Cow position:chr22:8708820-8709137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):73, 27

               
               
               Conread position:37-372
               
               
               Cow position:chr22:23735791-23736126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):23, 142

               
               
               Conread position:37-378
               
               
               Cow position:chr22:16621417-16621055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):13, 274

               
               
               Conread position:37-384
               
               
               Cow position:chr22:25943677-25943349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):231, 27

               
               
               Conread position:37-384
               
               
               Cow position:chr22:28639938-28640277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 28

               
               
               Conread position:38-257
               
               
               Cow position:chr22:6372142-6372346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):138, 48

               
               
               Conread position:38-289
               
               
               Cow position:chr22:3937280-3937022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):108, 148

               
               
               Conread position:38-325
               
               
               Cow position:chr22:1350048-1349755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):140, 27

               
               
               Conread position:38-351
               
               
               Cow position:chr22:4533650-4533968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 121

               
               
               Conread position:40-273
               
               
               Cow position:chr22:40870046-40869817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):104, 86

               
               
               Conread position:40-286
               
               
               Cow position:chr22:27008256-27008004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 139

               
               
               Conread position:40-291
               
               
               Cow position:chr22:17120673-17120418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):18, 151

               
               
               Conread position:40-354
               
               
               Cow position:chr22:25809064-25809367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):17, 94

               
               
               Conread position:40-379
               
               
               Cow position:chr22:15668269-15668595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):131, 15

               
               
               Conread position:41-230
               
               
               Cow position:chr22:13930494-13930307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):118, 23

               
               
               Conread position:41-343
               
               
               Cow position:chr22:16541435-16541738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):100, 23

               
               
               Conread position:41-355
               
               
               Cow position:chr22:12681578-12681900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):18, 130

               
               
               Conread position:41-384
               
               
               Cow position:chr22:44717939-44717585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 109

               
               
               Conread position:42-384
               
               
               Cow position:chr22:11131084-11130743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 118

               
               
               Conread position:42-384
               
               
               Cow position:chr22:30269615-30269286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:241
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):60, 64

               
               
               Conread position:43-247
               
               
               Cow position:chr22:4560596-4560803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):113, 145

               
               
               Conread position:43-330
               
               
               Cow position:chr22:19459829-19460124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):21, 134

               
               
               Conread position:43-365
               
               
               Cow position:chr22:3842831-3842510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):16, 111

               
               
               Conread position:43-386
               
               
               Cow position:chr22:21746851-21746514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):178, 82

               
               
               Conread position:45-273
               
               
               Cow position:chr22:1065320-1065088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 175

               
               
               Conread position:45-384
               
               
               Cow position:chr22:28071770-28071430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 103

               
               
               Conread position:46-247
               
               
               Cow position:chr22:35627561-35627358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 141

               
               
               Conread position:46-251
               
               
               Cow position:chr22:39471947-39472152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:46-342
               
               
               Cow position:chr22:4208784-4209079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):120, 18

               
               
               Conread position:46-383
               
               
               Cow position:chr22:14178622-14178952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):219, 90

               
               
               Conread position:47-309
               
               
               Cow position:chr22:28569010-28568746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 107

               
               
               Conread position:47-378
               
               
               Cow position:chr22:14091013-14091342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:47-379
               
               
               Cow position:chr22:1849284-1848949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):212, 0

               
               
               Conread position:47-383
               
               
               Cow position:chr22:39696506-39696165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:254
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):135, 80

               
               
               Conread position:47-384
               
               
               Cow position:chr22:29954805-29955124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):26, 75

               
               
               Conread position:48-235
               
               
               Cow position:chr22:19376881-19376692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):83, 16

               
               
               Conread position:48-239
               
               
               Cow position:chr22:17746028-17745831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):18, 106

               
               
               Conread position:48-244
               
               
               Cow position:chr22:1105420-1105613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):182, 43

               
               
               Conread position:48-256
               
               
               Cow position:chr22:8447115-8446917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:48-282
               
               
               Cow position:chr22:1776272-1776033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):15, 102

               
               
               Conread position:48-301
               
               
               Cow position:chr22:6176074-6176331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 200

               
               
               Conread position:48-319
               
               
               Cow position:chr22:18099825-18099555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):98, 5

               
               
               Conread position:48-331
               
               
               Cow position:chr22:15050386-15050106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 105

               
               
               Conread position:48-351
               
               
               Cow position:chr22:14006384-14006086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):106, 5

               
               
               Conread position:48-378
               
               
               Cow position:chr22:26134014-26134349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):104, 16

               
               
               Conread position:48-380
               
               
               Cow position:chr22:864320-864641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):8, 81

               
               
               Conread position:48-380
               
               
               Cow position:chr22:8733139-8733454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):181, 16

               
               
               Conread position:48-383
               
               
               Cow position:chr22:1326624-1326292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):96, 5

               
               
               Conread position:48-384
               
               
               Cow position:chr22:2623298-2623646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:260
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):32, 5

               
               
               Conread position:49-220
               
               
               Cow position:chr22:11790194-11790020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 129

               
               
               Conread position:49-255
               
               
               Cow position:chr22:26417487-26417285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:49-258
               
               
               Cow position:chr22:24890426-24890220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:49-282
               
               
               Cow position:chr22:8357786-8357558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):12, 43

               
               
               Conread position:49-289
               
               
               Cow position:chr22:23265440-23265686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 130

               
               
               Conread position:49-292
               
               
               Cow position:chr22:41854109-41853869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):158, 93

               
               
               Conread position:49-338
               
               
               Cow position:chr22:2109422-2109704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 78

               
               
               Conread position:49-375
               
               
               Cow position:chr22:5616502-5616190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 24

               
               
               Conread position:49-379
               
               
               Cow position:chr22:1984063-1983732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 15

               
               
               Conread position:49-383
               
               
               Cow position:chr22:14690753-14691093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:49-384
               
               
               Cow position:chr22:8090327-8090655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):18, 98

               
               
               Conread position:49-384
               
               
               Cow position:chr22:10295235-10294916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):214, 78

               
               
               Conread position:49-384
               
               
               Cow position:chr22:12316014-12315684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 74

               
               
               Conread position:49-384
               
               
               Cow position:chr22:22613309-22612984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 81

               
               
               Conread position:49-384
               
               
               Cow position:chr22:30818416-30818084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 92

               
               
               Conread position:50-195
               
               
               Cow position:chr22:1987177-1987034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:50-228
               
               
               Cow position:chr22:12207502-12207677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:50-255
               
               
               Cow position:chr22:5375600-5375396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:50-255
               
               
               Cow position:chr22:12777179-12777375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:50-262
               
               
               Cow position:chr22:8327948-8327741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):11, 81

               
               
               Conread position:50-263
               
               
               Cow position:chr22:1651695-1651482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):176, 92

               
               
               Conread position:50-265
               
               
               Cow position:chr22:7361769-7361985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):78, 142

               
               
               Conread position:50-269
               
               
               Cow position:chr22:1821384-1821597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):120, 14

               
               
               Conread position:50-272
               
               
               Cow position:chr22:4156611-4156833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):104, 14

               
               
               Conread position:50-329
               
               
               Cow position:chr22:8287389-8287119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):16, 95

               
               
               Conread position:50-331
               
               
               Cow position:chr22:30446290-30446562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):99, 7

               
               
               Conread position:50-343
               
               
               Cow position:chr22:2470032-2470333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:50-353
               
               
               Cow position:chr22:14214161-14214458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):41, 94

               
               
               Conread position:50-365
               
               
               Cow position:chr22:6754057-6754360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):96, 217

               
               
               Conread position:50-367
               
               
               Cow position:chr22:47556066-47555741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:50-368
               
               
               Cow position:chr22:6096810-6097134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):214, 270

               
               
               Conread position:50-369
               
               
               Cow position:chr22:37947927-37947611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):80, 36

               
               
               Conread position:50-376
               
               
               Cow position:chr22:22013954-22013632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):209, 14

               
               
               Conread position:50-378
               
               
               Cow position:chr22:32698969-32698643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):132, 184

               
               
               Conread position:50-378
               
               
               Cow position:chr22:33447873-33448202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:50-379
               
               
               Cow position:chr22:14142918-14143234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):107, 88

               
               
               Conread position:50-379
               
               
               Cow position:chr22:31599639-31599328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 151

               
               
               Conread position:50-382
               
               
               Cow position:chr22:10567514-10567826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 14

               
               
               Conread position:50-382
               
               
               Cow position:chr22:12573411-12573083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):208, 171

               
               
               Conread position:50-382
               
               
               Cow position:chr22:36432764-36433094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 173

               
               
               Conread position:50-383
               
               
               Cow position:chr22:17152894-17152555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 252

               
               
               Conread position:50-384
               
               
               Cow position:chr22:1289324-1289642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):255, 89

               
               
               Conread position:50-384
               
               
               Cow position:chr22:1309533-1309855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):212, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr22:2404089-2403749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 98

               
               
               Conread position:50-384
               
               
               Cow position:chr22:10684892-10685215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):49, 75

               
               
               Conread position:50-384
               
               
               Cow position:chr22:11601241-11600911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):96, 128

               
               
               Conread position:50-384
               
               
               Cow position:chr22:19341400-19341076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):104, 88

               
               
               Conread position:50-384
               
               
               Cow position:chr22:22023110-22022763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):94, 233

               
               
               Conread position:50-384
               
               
               Cow position:chr22:25205760-25206093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):81, 137

               
               
               Conread position:50-384
               
               
               Cow position:chr22:26339970-26339629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 244

               
               
               Conread position:50-384
               
               
               Cow position:chr22:27681930-27681588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):99, 250

               
               
               Conread position:50-384
               
               
               Cow position:chr22:28371138-28370820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 96

               
               
               Conread position:50-384
               
               
               Cow position:chr22:29642319-29641986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):14, 128

               
               
               Conread position:50-384
               
               
               Cow position:chr22:34736054-34735741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):67, 79

               
               
               Conread position:50-384
               
               
               Cow position:chr22:34895161-34894844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):114, 7

               
               
               Conread position:50-384
               
               
               Cow position:chr22:40387357-40387032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):116, 92

               
               
               Conread position:50-384
               
               
               Cow position:chr22:43398205-43397886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 50

               
               
               Conread position:50-385
               
               
               Cow position:chr22:17949770-17950092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):11, 79

               
               
               Conread position:50-386
               
               
               Cow position:chr22:4075679-4076018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):165, 246

               
               
               Conread position:50-390
               
               
               Cow position:chr22:46626171-46626515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):50, 14

               
               
               Conread position:50-394
               
               
               Cow position:chr22:44741276-44740956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 41

               
               
               Conread position:51-290
               
               
               Cow position:chr22:33948772-33949007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):135, 76

               
               
               Conread position:51-353
               
               
               Cow position:chr22:34619014-34618700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):76, 244

               
               
               Conread position:51-384
               
               
               Cow position:chr22:9127604-9127279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:51-384
               
               
               Cow position:chr22:11370387-11370714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):127, 49

               
               
               Conread position:51-384
               
               
               Cow position:chr22:27274484-27274817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):75, 218

               
               
               Conread position:52-220
               
               
               Cow position:chr22:30684927-30684765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:52-238
               
               
               Cow position:chr22:25312718-25312528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):54, 12

               
               
               Conread position:52-249
               
               
               Cow position:chr22:45771820-45772016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):14, 81

               
               
               Conread position:52-368
               
               
               Cow position:chr22:6852378-6852694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):104, 12

               
               
               Conread position:52-378
               
               
               Cow position:chr22:43237197-43237528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 249

               
               
               Conread position:52-384
               
               
               Cow position:chr22:964969-965302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):84, 27

               
               
               Conread position:52-384
               
               
               Cow position:chr22:4060745-4061073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 12

               
               
               Conread position:53-229
               
               
               Cow position:chr22:12637804-12637628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):112, 134

               
               
               Conread position:53-230
               
               
               Cow position:chr22:5778877-5779056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):19, 163

               
               
               Conread position:53-249
               
               
               Cow position:chr22:6106169-6106368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:53-260
               
               
               Cow position:chr22:8571123-8570903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:53-272
               
               
               Cow position:chr22:12188269-12188496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:53-272
               
               
               Cow position:chr22:12195355-12195583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:53-273
               
               
               Cow position:chr22:2876595-2876814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:53-274
               
               
               Cow position:chr22:39446497-39446274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):93, 137

               
               
               Conread position:53-277
               
               
               Cow position:chr22:23277541-23277334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):211, 38

               
               
               Conread position:53-279
               
               
               Cow position:chr22:42130378-42130150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 93

               
               
               Conread position:53-332
               
               
               Cow position:chr22:12981522-12981798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):81, 93

               
               
               Conread position:53-332
               
               
               Cow position:chr22:30999093-30998808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):43, 234

               
               
               Conread position:53-346
               
               
               Cow position:chr22:27275668-27275375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):83, 124

               
               
               Conread position:53-349
               
               
               Cow position:chr22:24336747-24336435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):56, 248

               
               
               Conread position:53-352
               
               
               Cow position:chr22:17132205-17132506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):98, 11

               
               
               Conread position:53-365
               
               
               Cow position:chr22:285163-285467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 93

               
               
               Conread position:53-366
               
               
               Cow position:chr22:27619940-27619620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):67, 123

               
               
               Conread position:53-368
               
               
               Cow position:chr22:617327-617010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):34, 103

               
               
               Conread position:53-368
               
               
               Cow position:chr22:1871308-1870990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):71, 21

               
               
               Conread position:53-368
               
               
               Cow position:chr22:14372370-14372075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):211, 88

               
               
               Conread position:53-368
               
               
               Cow position:chr22:17193596-17193279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):97, 20

               
               
               Conread position:53-368
               
               
               Cow position:chr22:32661717-32661398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):86, 114

               
               
               Conread position:53-369
               
               
               Cow position:chr22:41898246-41898555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 106

               
               
               Conread position:53-378
               
               
               Cow position:chr22:1485069-1484744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):116, 91

               
               
               Conread position:53-378
               
               
               Cow position:chr22:39602488-39602159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):94, 296

               
               
               Conread position:53-380
               
               
               Cow position:chr22:10338903-10339236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):78, 191

               
               
               Conread position:53-381
               
               
               Cow position:chr22:34616518-34616179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 319

               
               
               Conread position:53-382
               
               
               Cow position:chr22:8138052-8138383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):91, 244

               
               
               Conread position:53-382
               
               
               Cow position:chr22:26150912-26151236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 117

               
               
               Conread position:53-382
               
               
               Cow position:chr22:27171065-27171380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):8, 74

               
               
               Conread position:53-383
               
               
               Cow position:chr22:21890163-21890482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):91, 41

               
               
               Conread position:53-384
               
               
               Cow position:chr22:11613629-11613297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 231

               
               
               Conread position:53-384
               
               
               Cow position:chr22:15567819-15568141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 88

               
               
               Conread position:53-384
               
               
               Cow position:chr22:17852435-17852752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 92

               
               
               Conread position:53-384
               
               
               Cow position:chr22:22860708-22861036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):112, 131

               
               
               Conread position:53-384
               
               
               Cow position:chr22:27322501-27322189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):127, 32

               
               
               Conread position:53-384
               
               
               Cow position:chr22:40048761-40048429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 171

               
               
               Conread position:53-384
               
               
               Cow position:chr22:40349544-40349223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 74

               
               
               Conread position:53-410
               
               
               Cow position:chr22:34632356-34631984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):9, 117

               
               
               Conread position:54-241
               
               
               Cow position:chr22:1384275-1384098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:54-244
               
               
               Cow position:chr22:10468711-10468524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:54-271
               
               
               Cow position:chr22:7584041-7584251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 44

               
               
               Conread position:54-330
               
               
               Cow position:chr22:23249535-23249800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):168, 84

               
               
               Conread position:54-331
               
               
               Cow position:chr22:11813522-11813806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):205, 123

               
               
               Conread position:54-339
               
               
               Cow position:chr22:21397714-21397987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):211, 32

               
               
               Conread position:54-343
               
               
               Cow position:chr22:37029405-37029691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):72, 13

               
               
               Conread position:54-368
               
               
               Cow position:chr22:18838452-18838139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):164, 90

               
               
               Conread position:54-376
               
               
               Cow position:chr22:12803186-12803506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 88

               
               
               Conread position:54-378
               
               
               Cow position:chr22:534691-534378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):210, 67

               
               
               Conread position:54-384
               
               
               Cow position:chr22:1975822-1975485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):90, 165

               
               
               Conread position:54-384
               
               
               Cow position:chr22:4535120-4535451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 41

               
               
               Conread position:54-384
               
               
               Cow position:chr22:12313621-12313296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):210, 74

               
               
               Conread position:54-384
               
               
               Cow position:chr22:30699367-30699052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 67

               
               
               Conread position:54-384
               
               
               Cow position:chr22:37202051-37201726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 94

               
               
               Conread position:55-280
               
               
               Cow position:chr22:10557472-10557256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):133, 18

               
               
               Conread position:55-383
               
               
               Cow position:chr22:18020830-18021147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):72, 52

               
               
               Conread position:55-384
               
               
               Cow position:chr22:6327571-6327894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:56-241
               
               
               Cow position:chr22:13951462-13951279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:56-249
               
               
               Cow position:chr22:8480307-8480113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:56-274
               
               
               Cow position:chr22:16806787-16806577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):203, 68

               
               
               Conread position:56-332
               
               
               Cow position:chr22:26017560-26017815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):208, 30

               
               
               Conread position:56-378
               
               
               Cow position:chr22:47741616-47741299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):247, 62

               
               
               Conread position:56-379
               
               
               Cow position:chr22:26786558-26786234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):166, 67

               
               
               Conread position:56-384
               
               
               Cow position:chr22:4373234-4372918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):139, 29

               
               
               Conread position:56-384
               
               
               Cow position:chr22:6494375-6494044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):73, 229

               
               
               Conread position:56-384
               
               
               Cow position:chr22:38438958-38439281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 35

               
               
               Conread position:56-384
               
               
               Cow position:chr22:39507840-39508169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 118

               
               
               Conread position:57-200
               
               
               Cow position:chr22:29546836-29546696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:57-256
               
               
               Cow position:chr22:1304356-1304553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):177, 70

               
               
               Conread position:57-271
               
               
               Cow position:chr22:16813994-16813783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):207, 95

               
               
               Conread position:57-282
               
               
               Cow position:chr22:243301-243087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):207, 83

               
               
               Conread position:57-289
               
               
               Cow position:chr22:13891774-13891528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):108, 88

               
               
               Conread position:57-300
               
               
               Cow position:chr22:24134124-24134366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):90, 166

               
               
               Conread position:57-308
               
               
               Cow position:chr22:4054404-4054637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):223, 94

               
               
               Conread position:57-328
               
               
               Cow position:chr22:42618194-42617927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):207, 34

               
               
               Conread position:57-331
               
               
               Cow position:chr22:35029458-35029191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):207, 70

               
               
               Conread position:57-369
               
               
               Cow position:chr22:30697347-30697048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):109, 85

               
               
               Conread position:57-374
               
               
               Cow position:chr22:38320508-38320795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):209, 70

               
               
               Conread position:57-377
               
               
               Cow position:chr22:40374805-40374488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):207, 97

               
               
               Conread position:57-381
               
               
               Cow position:chr22:42635233-42635555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 121

               
               
               Conread position:57-382
               
               
               Cow position:chr22:26166419-26166745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):64, 29

               
               
               Conread position:57-383
               
               
               Cow position:chr22:644582-644890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):218, 38

               
               
               Conread position:57-383
               
               
               Cow position:chr22:27730239-27729925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:57-384
               
               
               Cow position:chr22:3534130-3533817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):116, 66

               
               
               Conread position:57-384
               
               
               Cow position:chr22:4044122-4043805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):207, 32

               
               
               Conread position:57-384
               
               
               Cow position:chr22:16094707-16095028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 97

               
               
               Conread position:57-384
               
               
               Cow position:chr22:41982521-41982842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:58-247
               
               
               Cow position:chr22:45788804-45788620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 85

               
               
               Conread position:58-272
               
               
               Cow position:chr22:11352248-11352468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 93

               
               
               Conread position:58-272
               
               
               Cow position:chr22:14641658-14641872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):86, 119

               
               
               Conread position:58-343
               
               
               Cow position:chr22:3301138-3301423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):91, 119

               
               
               Conread position:58-364
               
               
               Cow position:chr22:4132775-4132464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):86, 128

               
               
               Conread position:58-376
               
               
               Cow position:chr22:37030326-37030640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):201, 63

               
               
               Conread position:58-381
               
               
               Cow position:chr22:10416424-10416091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):88, 46

               
               
               Conread position:58-383
               
               
               Cow position:chr22:7082227-7081903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 110

               
               
               Conread position:58-383
               
               
               Cow position:chr22:27635678-27635350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):73, 110

               
               
               Conread position:58-384
               
               
               Cow position:chr22:2524148-2523837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):161, 69

               
               
               Conread position:58-384
               
               
               Cow position:chr22:6149190-6149509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):91, 129

               
               
               Conread position:58-384
               
               
               Cow position:chr22:18259414-18259097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 73

               
               
               Conread position:59-216
               
               
               Cow position:chr22:37702171-37702019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):107, 36

               
               
               Conread position:59-234
               
               
               Cow position:chr22:33449474-33449646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):105, 21

               
               
               Conread position:59-247
               
               
               Cow position:chr22:18545483-18545299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):107, 79

               
               
               Conread position:59-249
               
               
               Cow position:chr22:12673135-12673327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):95, 128

               
               
               Conread position:59-252
               
               
               Cow position:chr22:19413837-19414032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):95, 128

               
               
               Conread position:59-272
               
               
               Cow position:chr22:23372662-23372880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):63, 107

               
               
               Conread position:59-273
               
               
               Cow position:chr22:4736223-4736006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 131

               
               
               Conread position:59-274
               
               
               Cow position:chr22:16840597-16840815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 128

               
               
               Conread position:59-289
               
               
               Cow position:chr22:35215748-35215515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):87, 119

               
               
               Conread position:59-330
               
               
               Cow position:chr22:18193664-18193388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 129

               
               
               Conread position:59-330
               
               
               Cow position:chr22:23358349-23358078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):90, 35

               
               
               Conread position:59-332
               
               
               Cow position:chr22:43965900-43965622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):97, 119

               
               
               Conread position:59-344
               
               
               Cow position:chr22:17359670-17359391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):85, 119

               
               
               Conread position:59-350
               
               
               Cow position:chr22:30607056-30606771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):90, 119

               
               
               Conread position:59-364
               
               
               Cow position:chr22:16533269-16532969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):77, 35

               
               
               Conread position:59-378
               
               
               Cow position:chr22:5291052-5290727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):79, 130

               
               
               Conread position:59-378
               
               
               Cow position:chr22:21568188-21567876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):85, 36

               
               
               Conread position:59-378
               
               
               Cow position:chr22:27819194-27818881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):229, 83

               
               
               Conread position:59-378
               
               
               Cow position:chr22:27828574-27828263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):112, 83

               
               
               Conread position:59-380
               
               
               Cow position:chr22:5595611-5595931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):87, 165

               
               
               Conread position:59-384
               
               
               Cow position:chr22:1035624-1035945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):200, 32

               
               
               Conread position:59-384
               
               
               Cow position:chr22:1653989-1654321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):97, 119

               
               
               Conread position:59-384
               
               
               Cow position:chr22:3566364-3566049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:59-384
               
               
               Cow position:chr22:3987719-3987389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):90, 129

               
               
               Conread position:59-384
               
               
               Cow position:chr22:4993719-4994044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):197, 36

               
               
               Conread position:59-384
               
               
               Cow position:chr22:28357224-28356912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):97, 32

               
               
               Conread position:59-384
               
               
               Cow position:chr22:32326996-32326676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):90, 64

               
               
               Conread position:59-384
               
               
               Cow position:chr22:36132995-36132671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):90, 135

               
               
               Conread position:59-384
               
               
               Cow position:chr22:36560453-36560784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):55, 137

               
               
               Conread position:59-385
               
               
               Cow position:chr22:59810-59481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 128

               
               
               Conread position:59-385
               
               
               Cow position:chr22:15490852-15490530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):187, 228

               
               
               Conread position:60-234
               
               
               Cow position:chr22:2201930-2201763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:60-234
               
               
               Cow position:chr22:33522681-33522857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):84, 118

               
               
               Conread position:60-253
               
               
               Cow position:chr22:33031005-33030802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:60-257
               
               
               Cow position:chr22:23780377-23780568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:60-257
               
               
               Cow position:chr22:26189068-26188870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:60-259
               
               
               Cow position:chr22:33373439-33373239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):100, 34

               
               
               Conread position:60-274
               
               
               Cow position:chr22:21905664-21905454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):48, 84

               
               
               Conread position:60-290
               
               
               Cow position:chr22:24542560-24542329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 222

               
               
               Conread position:60-302
               
               
               Cow position:chr22:33985611-33985844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):51, 82

               
               
               Conread position:60-303
               
               
               Cow position:chr22:7496911-7497155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:60-319
               
               
               Cow position:chr22:6289303-6289558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):112, 106

               
               
               Conread position:60-332
               
               
               Cow position:chr22:10122564-10122302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):204, 67

               
               
               Conread position:60-332
               
               
               Cow position:chr22:28146876-28146598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):64, 14

               
               
               Conread position:60-339
               
               
               Cow position:chr22:27577941-27577660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):86, 162

               
               
               Conread position:60-344
               
               
               Cow position:chr22:9977990-9977727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):237, 68

               
               
               Conread position:60-347
               
               
               Cow position:chr22:1659363-1659072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):96, 32

               
               
               Conread position:60-367
               
               
               Cow position:chr22:25247105-25246806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):296, 78

               
               
               Conread position:60-368
               
               
               Cow position:chr22:6709594-6709891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 84

               
               
               Conread position:60-384
               
               
               Cow position:chr22:1563044-1563377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):67, 172

               
               
               Conread position:60-384
               
               
               Cow position:chr22:3316289-3315984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:60-384
               
               
               Cow position:chr22:4563552-4563233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 61

               
               
               Conread position:60-384
               
               
               Cow position:chr22:6215361-6215684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 92

               
               
               Conread position:60-384
               
               
               Cow position:chr22:6720885-6721200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 85

               
               
               Conread position:60-384
               
               
               Cow position:chr22:7967892-7967575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:60-384
               
               
               Cow position:chr22:23689008-23689332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):94, 31

               
               
               Conread position:60-384
               
               
               Cow position:chr22:24066048-24066361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):204, 24

               
               
               Conread position:60-384
               
               
               Cow position:chr22:36194027-36193727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):245, 64

               
               
               Conread position:60-384
               
               
               Cow position:chr22:40072157-40071854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):205, 10

               
               
               Conread position:60-394
               
               
               Cow position:chr22:13957449-13957790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 86

               
               
               Conread position:61-254
               
               
               Cow position:chr22:7518749-7518558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:61-262
               
               
               Cow position:chr22:4628757-4628548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:61-269
               
               
               Cow position:chr22:11189225-11189019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):112, 95

               
               
               Conread position:61-272
               
               
               Cow position:chr22:2184521-2184729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):196, 87

               
               
               Conread position:61-301
               
               
               Cow position:chr22:12902661-12902892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):203, 84

               
               
               Conread position:61-373
               
               
               Cow position:chr22:12829414-12829727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 87

               
               
               Conread position:61-383
               
               
               Cow position:chr22:8412725-8412402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 92

               
               
               Conread position:61-384
               
               
               Cow position:chr22:8418659-8418339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):86, 126

               
               
               Conread position:61-384
               
               
               Cow position:chr22:12929083-12929402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 128

               
               
               Conread position:61-384
               
               
               Cow position:chr22:23115112-23115429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):67, 18

               
               
               Conread position:62-220
               
               
               Cow position:chr22:16639502-16639341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):74, 126

               
               
               Conread position:62-251
               
               
               Cow position:chr22:6203145-6202954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):85, 125

               
               
               Conread position:62-266
               
               
               Cow position:chr22:6359999-6360193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:62-332
               
               
               Cow position:chr22:1588489-1588218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):200, 0

               
               
               Conread position:62-378
               
               
               Cow position:chr22:34726869-34726554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):65, 29

               
               
               Conread position:62-384
               
               
               Cow position:chr22:25221709-25222026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):202, 79

               
               
               Conread position:63-348
               
               
               Cow position:chr22:13866861-13866571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):83, 124

               
               
               Conread position:63-384
               
               
               Cow position:chr22:32480274-32480606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):73, 96

               
               
               Conread position:64-241
               
               
               Cow position:chr22:3540928-3541102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):109, 27

               
               
               Conread position:64-249
               
               
               Cow position:chr22:45104073-45104263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 121

               
               
               Conread position:64-265
               
               
               Cow position:chr22:1523414-1523210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):60, 118

               
               
               Conread position:64-297
               
               
               Cow position:chr22:14141149-14141383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):199, 0

               
               
               Conread position:64-300
               
               
               Cow position:chr22:23675781-23676008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):200, 78

               
               
               Conread position:64-368
               
               
               Cow position:chr22:12892169-12892477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):70, 284

               
               
               Conread position:64-374
               
               
               Cow position:chr22:899030-898730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):200, 63

               
               
               Conread position:64-383
               
               
               Cow position:chr22:21012577-21012264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):51, 31

               
               
               Conread position:64-383
               
               
               Cow position:chr22:25361669-25361361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):207, 59

               
               
               Conread position:64-385
               
               
               Cow position:chr22:19827669-19827993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:65-384
               
               
               Cow position:chr22:14245247-14245561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):62, 123

               
               
               Conread position:65-384
               
               
               Cow position:chr22:45796535-45796216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):44, 83

               
               
               Conread position:67-256
               
               
               Cow position:chr22:29135144-29134954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):30, 75

               
               
               Conread position:68-218
               
               
               Cow position:chr22:26931049-26930901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:68-250
               
               
               Cow position:chr22:2436435-2436611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:68-251
               
               
               Cow position:chr22:28493093-28493273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):88, 120

               
               
               Conread position:68-252
               
               
               Cow position:chr22:18145723-18145543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:68-440
               
               
               Cow position:chr22:27066571-27066207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 165

               
               
               Conread position:69-233
               
               
               Cow position:chr22:15006925-15007087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:69-377
               
               
               Cow position:chr22:6600488-6600801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):67, 25

               
               
               Conread position:69-378
               
               
               Cow position:chr22:16053500-16053191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 113

               
               
               Conread position:69-378
               
               
               Cow position:chr22:21325549-21325852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):188, 39

               
               
               Conread position:70-347
               
               
               Cow position:chr22:4315822-4315538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):34, 158

               
               
               Conread position:70-377
               
               
               Cow position:chr22:40120687-40120995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):64, 112

               
               
               Conread position:70-384
               
               
               Cow position:chr22:17258976-17259286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):93, 187

               
               
               Conread position:71-360
               
               
               Cow position:chr22:9597400-9597683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):181, 57

               
               
               Conread position:72-235
               
               
               Cow position:chr22:12853919-12854083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 114

               
               
               Conread position:72-237
               
               
               Cow position:chr22:11497679-11497513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):75, 33

               
               
               Conread position:72-246
               
               
               Cow position:chr22:1819347-1819526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:72-255
               
               
               Cow position:chr22:6793696-6793872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:72-272
               
               
               Cow position:chr22:2644117-2643914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):63, 191

               
               
               Conread position:72-346
               
               
               Cow position:chr22:25690094-25690370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):120, 66

               
               
               Conread position:72-371
               
               
               Cow position:chr22:23180862-23181154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):192, 44

               
               
               Conread position:72-378
               
               
               Cow position:chr22:12389286-12388976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):75, 105

               
               
               Conread position:72-378
               
               
               Cow position:chr22:13669983-13670292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):74, 109

               
               
               Conread position:72-383
               
               
               Cow position:chr22:17581238-17581551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):71, 114

               
               
               Conread position:72-384
               
               
               Cow position:chr22:14378508-14378806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):77, 116

               
               
               Conread position:72-384
               
               
               Cow position:chr22:20627017-20626714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):120, 56

               
               
               Conread position:72-401
               
               
               Cow position:chr22:10631572-10631234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 45

               
               
               Conread position:72-411
               
               
               Cow position:chr22:17126631-17126300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):92, 64

               
               
               Conread position:72-442
               
               
               Cow position:chr22:10609541-10609170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):82, 7

               
               
               Conread position:73-220
               
               
               Cow position:chr22:33565912-33566057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:73-270
               
               
               Cow position:chr22:8331183-8330985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):71, 6

               
               
               Conread position:74-383
               
               
               Cow position:chr22:28057860-28058179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):47, 33

               
               
               Conread position:74-384
               
               
               Cow position:chr22:30094425-30094118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):86, 110

               
               
               Conread position:74-384
               
               
               Cow position:chr22:30484086-30483790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:74-384
               
               
               Cow position:chr22:31646665-31646366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 31

               
               
               Conread position:74-385
               
               
               Cow position:chr22:29014066-29013749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 103

               
               
               Conread position:79-345
               
               
               Cow position:chr22:18933534-18933808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):67, 265

               
               
               Conread position:79-384
               
               
               Cow position:chr22:14365775-14366077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):42, 219

               
               
               Conread position:79-384
               
               
               Cow position:chr22:15068606-15068298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):94, 65

               
               
               Conread position:79-384
               
               
               Cow position:chr22:45513347-45513642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):57, 79

               
               
               Conread position:80-249
               
               
               Cow position:chr22:19786519-19786348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):69, 98

               
               
               Conread position:80-300
               
               
               Cow position:chr22:32514472-32514247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):69, 104

               
               
               Conread position:80-349
               
               
               Cow position:chr22:43321527-43321256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):69, 97

               
               
               Conread position:80-388
               
               
               Cow position:chr22:30515446-30515121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 65

               
               
               Conread position:81-233
               
               
               Cow position:chr22:16655564-16655714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:86-384
               
               
               Cow position:chr22:15024939-15025236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):48, 68

               
               
               Conread position:87-384
               
               
               Cow position:chr22:29289980-29290260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):177, 29

               
               
               Conread position:90-384
               
               
               Cow position:chr22:10936680-10936956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):68, 152

               
               
               Conread position:90-384
               
               
               Cow position:chr22:32892865-32892572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):54, 215

               
               
               Conread position:92-384
               
               
               Cow position:chr22:4119399-4119692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 54

               
               
               Conread position:94-384
               
               
               Cow position:chr22:1591180-1590896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 27

               
               
               Conread position:96-384
               
               
               Cow position:chr22:1067754-1068040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):175, 6

               
               
               Conread position:97-331
               
               
               Cow position:chr22:9171566-9171331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):167, 31

               
               
               Conread position:98-352
               
               
               Cow position:chr22:24915997-24915742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):48, 29

               
               
               Conread position:98-384
               
               
               Cow position:chr22:17224511-17224791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):172, 57

               
               
               Conread position:105-283
               
               
               Cow position:chr22:8710222-8710399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:108-384
               
               
               Cow position:chr22:15039036-15039309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 38

               
               
               Conread position:127-274
               
               
               Cow position:chr22:10324009-10323862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:127-320
               
               
               Cow position:chr22:21235308-21235497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):137, 20

               
               
               Conread position:128-332
               
               
               Cow position:chr22:1026017-1025812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):102, 19

               
               
               Conread position:128-347
               
               
               Cow position:chr22:10286099-10285876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):100, 59

               
               
               Conread position:128-363
               
               
               Cow position:chr22:13222246-13222006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:128-378
               
               
               Cow position:chr22:2627714-2627454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 174

               
               
               Conread position:128-378
               
               
               Cow position:chr22:27328764-27329009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 134

               
               
               Conread position:128-384
               
               
               Cow position:chr22:10315205-10314948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):136, 93

               
               
               Conread position:128-384
               
               
               Cow position:chr22:17764503-17764253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):136, 18

               
               
               Conread position:128-384
               
               
               Cow position:chr22:37324672-37324419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):16, 63

               
               
               Conread position:129-329
               
               
               Cow position:chr22:26706681-26706880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 15

               
               
               Conread position:129-377
               
               
               Cow position:chr22:6936384-6936145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:129-378
               
               
               Cow position:chr22:23176314-23176558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):135, 22

               
               
               Conread position:129-383
               
               
               Cow position:chr22:28351541-28351777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):135, 49

               
               
               Conread position:129-384
               
               
               Cow position:chr22:4017599-4017350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:198
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):63, 17

               
               
               Conread position:129-384
               
               
               Cow position:chr22:27431579-27431814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):130, 23

               
               
               Conread position:129-384
               
               
               Cow position:chr22:31154083-31153829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 158

               
               
               Conread position:130-384
               
               
               Cow position:chr22:30049441-30049696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):129, 22

               
               
               Conread position:131-348
               
               
               Cow position:chr22:34104546-34104766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):133, 164

               
               
               Conread position:131-378
               
               
               Cow position:chr22:3965312-3965066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):133, 154

               
               
               Conread position:131-378
               
               
               Cow position:chr22:24175772-24176002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:131-378
               
               
               Cow position:chr22:25540123-25539873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:131-379
               
               
               Cow position:chr22:16044292-16044541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:131-384
               
               
               Cow position:chr22:877641-877386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:131-384
               
               
               Cow position:chr22:2502950-2502708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):133, 30

               
               
               Conread position:131-384
               
               
               Cow position:chr22:19173826-19173572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):69, 21

               
               
               Conread position:131-384
               
               
               Cow position:chr22:21295599-21295851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):133, 91

               
               
               Conread position:131-384
               
               
               Cow position:chr22:21530233-21530479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 145

               
               
               Conread position:131-384
               
               
               Cow position:chr22:25387453-25387197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):133, 216

               
               
               Conread position:131-384
               
               
               Cow position:chr22:43119605-43119855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):132, 21

               
               
               Conread position:131-387
               
               
               Cow position:chr22:3950378-3950120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):115, 91

               
               
               Conread position:132-345
               
               
               Cow position:chr22:26123023-26122809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 160

               
               
               Conread position:132-383
               
               
               Cow position:chr22:32895342-32895091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:132-384
               
               
               Cow position:chr22:2216933-2216696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):169, 9

               
               
               Conread position:132-384
               
               
               Cow position:chr22:2912465-2912709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):132, 51

               
               
               Conread position:132-384
               
               
               Cow position:chr22:10421158-10420904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):63, 207

               
               
               Conread position:132-384
               
               
               Cow position:chr22:12967945-12968198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):132, 19

               
               
               Conread position:132-384
               
               
               Cow position:chr22:13841263-13841010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):132, 19

               
               
               Conread position:132-384
               
               
               Cow position:chr22:23857170-23856922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):143, 19

               
               
               Conread position:132-384
               
               
               Cow position:chr22:34750798-34750551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):137, 69

               
               
               Conread position:133-364
               
               
               Cow position:chr22:8115964-8116195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):123, 162

               
               
               Conread position:133-368
               
               
               Cow position:chr22:1265800-1266039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 51

               
               
               Conread position:133-377
               
               
               Cow position:chr22:35753185-35753428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:133-384
               
               
               Cow position:chr22:3317244-3316995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):131, 59

               
               
               Conread position:133-384
               
               
               Cow position:chr22:26659163-26658928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):172, 14

               
               
               Conread position:134-265
               
               
               Cow position:chr22:22606346-22606217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:134-272
               
               
               Cow position:chr22:1838430-1838292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:134-342
               
               
               Cow position:chr22:10553564-10553770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:134-378
               
               
               Cow position:chr22:17814353-17814105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):129, 18

               
               
               Conread position:135-296
               
               
               Cow position:chr22:23036287-23036126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 12

               
               
               Conread position:135-384
               
               
               Cow position:chr22:17294815-17295057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):129, 16

               
               
               Conread position:136-383
               
               
               Cow position:chr22:14924613-14924858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):130, 16

               
               
               Conread position:136-384
               
               
               Cow position:chr22:21502863-21502616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):128, 16

               
               
               Conread position:138-296
               
               
               Cow position:chr22:4149536-4149384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):126, 14

               
               
               Conread position:138-326
               
               
               Cow position:chr22:4137528-4137720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):9, 151

               
               
               Conread position:140-368
               
               
               Cow position:chr22:34712840-34712613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):124, 21

               
               
               Conread position:146-382
               
               
               Cow position:chr22:44180704-44180466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):118, 149

               
               
               Conread position:146-384
               
               
               Cow position:chr22:24734206-24734439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:146-384
               
               
               Cow position:chr22:26141385-26141149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):120, 34

               
               
               Conread position:146-384
               
               
               Cow position:chr22:45846252-45846019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):118, 15

               
               
               Conread position:147-283
               
               
               Cow position:chr22:1977859-1977722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:147-378
               
               
               Cow position:chr22:4011294-4011063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:147-378
               
               
               Cow position:chr22:12341306-12341074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):118, 70

               
               
               Conread position:147-384
               
               
               Cow position:chr22:5337488-5337724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:147-384
               
               
               Cow position:chr22:10633024-10632792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):115, 92

               
               
               Conread position:147-384
               
               
               Cow position:chr22:13861686-13861462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):137, 43

               
               
               Conread position:148-368
               
               
               Cow position:chr22:46567785-46567999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):118, 31

               
               
               Conread position:148-379
               
               
               Cow position:chr22:12527013-12527247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 74

               
               
               Conread position:148-383
               
               
               Cow position:chr22:5384761-5384525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):117, 42

               
               
               Conread position:148-384
               
               
               Cow position:chr22:590448-590212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):115, 188

               
               
               Conread position:148-384
               
               
               Cow position:chr22:21355032-21355265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):116, 137

               
               
               Conread position:151-382
               
               
               Cow position:chr22:8481750-8481518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:151-384
               
               
               Cow position:chr22:7852070-7851836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 36

               
               
               Conread position:151-384
               
               
               Cow position:chr22:15090848-15090613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):113, 134

               
               
               Conread position:152-383
               
               
               Cow position:chr22:13300516-13300287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):112, 137

               
               
               Conread position:152-384
               
               
               Cow position:chr22:4645876-4645646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 17

               
               
               Conread position:153-383
               
               
               Cow position:chr22:7838694-7838468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):110, 74

               
               
               Conread position:153-384
               
               
               Cow position:chr22:846007-845775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):111, 200

               
               
               Conread position:155-333
               
               
               Cow position:chr22:12686584-12686755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):146, 66

               
               
               Conread position:155-349
               
               
               Cow position:chr22:10669372-10669566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):110, 13

               
               
               Conread position:155-383
               
               
               Cow position:chr22:19047714-19047944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 62

               
               
               Conread position:156-384
               
               
               Cow position:chr22:14638376-14638609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:156-384
               
               
               Cow position:chr22:26184060-26184289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):108, 94

               
               
               Conread position:156-385
               
               
               Cow position:chr22:3269387-3269604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:161-379
               
               
               Cow position:chr22:24628562-24628771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):103, 72

               
               
               Conread position:161-385
               
               
               Cow position:chr22:9283502-9283727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):103, 127

               
               
               Conread position:165-384
               
               
               Cow position:chr22:7885082-7884862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:168-384
               
               
               Cow position:chr22:22160815-22160597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:171-345
               
               
               Cow position:chr22:28290203-28290031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:172-384
               
               
               Cow position:chr22:6960935-6960732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 77

               
               
               Conread position:180-348
               
               
               Cow position:chr22:41979769-41979934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:180-381
               
               
               Cow position:chr22:40720218-40720408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:180-384
               
               
               Cow position:chr22:31592779-31592986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):84, 53

               
               
               Conread position:182-378
               
               
               Cow position:chr22:10919776-10919974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):10, 113

               
               
               Conread position:185-384
               
               
               Cow position:chr22:17992959-17993159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):86, 130

               
               
               Conread position:185-384
               
               
               Cow position:chr22:34398384-34398585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:187-384
               
               
               Cow position:chr22:15731264-15731073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):112, 87

               
               
               Conread position:187-384
               
               
               Cow position:chr22:19775362-19775558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):79, 136

               
               
               Conread position:187-385
               
               
               Cow position:chr22:30964198-30963993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:188-384
               
               
               Cow position:chr22:912167-911971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):76, 85

               
               
               Conread position:190-384
               
               
               Cow position:chr22:3993677-3993485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):74, 92

               
               
               Conread position:191-384
               
               
               Cow position:chr22:5675115-5675301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):75, 16

               
               
               Conread position:191-384
               
               
               Cow position:chr22:14882050-14882236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):73, 28

               
               
               Conread position:191-384
               
               
               Cow position:chr22:27835599-27835403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):73, 29

               
               
               Conread position:194-382
               
               
               Cow position:chr22:1279322-1279511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):74, 100

               
               
               Conread position:194-384
               
               
               Cow position:chr22:10983413-10983221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):73, 159

               
               
               Conread position:194-384
               
               
               Cow position:chr22:15760425-15760242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 60

               
               
               Conread position:196-384
               
               
               Cow position:chr22:1874754-1874566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:196-384
               
               
               Cow position:chr22:26097559-26097747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):70, 21

               
               
               Conread position:197-349
               
               
               Cow position:chr22:15753444-15753291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 97

               
               
               Conread position:198-384
               
               
               Cow position:chr22:45019785-45019962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:207-378
               
               
               Cow position:chr22:45579017-45578843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:207-384
               
               
               Cow position:chr22:226404-226579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 117

               
               
               Conread position:223-381
               
               
               Cow position:chr22:27292125-27291971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):20, 61

               
               
               Conread position:224-384
               
               
               Cow position:chr22:41270968-41271126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 61

               
               
               Conread position:237-383
               
               
               Cow position:chr22:36569531-36569675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 56

               
               
               Conread position:254-384
               
               
               Cow position:chr22:9734858-9734727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 36

               
               
               Conread position:1-235
               
               
               Cow position:chr23:21638636-21638404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):65, 145

               
               
               Conread position:1-252
               
               
               Cow position:chr23:6672364-6672625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):56, 22

               
               
               Conread position:1-256
               
               
               Cow position:chr23:17462605-17462355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):20, 53

               
               
               Conread position:1-325
               
               
               Cow position:chr23:1614395-1614721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):20, 65

               
               
               Conread position:1-384
               
               
               Cow position:chr23:187438-187056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 52

               
               
               Conread position:1-384
               
               
               Cow position:chr23:31494127-31493750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:266
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):77, 25

               
               
               Conread position:2-248
               
               
               Cow position:chr23:21628424-21628174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:3-384
               
               
               Cow position:chr23:7361357-7360995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):22, 105

               
               
               Conread position:4-327
               
               
               Cow position:chr23:7710040-7709727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):257, 123

               
               
               Conread position:4-384
               
               
               Cow position:chr23:3890312-3890688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:261
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:7-307
               
               
               Cow position:chr23:25990185-25990483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):28, 45

               
               
               Conread position:12-361
               
               
               Cow position:chr23:34314701-34315056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):17, 182

               
               
               Conread position:13-262
               
               
               Cow position:chr23:27849241-27848997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:13-270
               
               
               Cow position:chr23:40737765-40738027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):51, 173

               
               
               Conread position:13-378
               
               
               Cow position:chr23:31601203-31601567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:238
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):141, 40

               
               
               Conread position:18-368
               
               
               Cow position:chr23:16848218-16847863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):9, 128

               
               
               Conread position:20-349
               
               
               Cow position:chr23:17486583-17486913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 9

               
               
               Conread position:21-343
               
               
               Cow position:chr23:24966222-24966545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 32

               
               
               Conread position:22-230
               
               
               Cow position:chr23:15099686-15099897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:23-348
               
               
               Cow position:chr23:39524323-39524652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):63, 25

               
               
               Conread position:23-384
               
               
               Cow position:chr23:24929829-24930191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:23-384
               
               
               Cow position:chr23:39813739-39813383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):121, 30

               
               
               Conread position:25-384
               
               
               Cow position:chr23:29801672-29801310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):140, 101

               
               
               Conread position:26-281
               
               
               Cow position:chr23:3234536-3234801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 158

               
               
               Conread position:27-274
               
               
               Cow position:chr23:39202838-39203081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):100, 37

               
               
               Conread position:27-378
               
               
               Cow position:chr23:21788542-21788880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):122, 25

               
               
               Conread position:27-384
               
               
               Cow position:chr23:5869956-5870304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):127, 37

               
               
               Conread position:27-384
               
               
               Cow position:chr23:15286915-15287252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):13, 101

               
               
               Conread position:28-220
               
               
               Cow position:chr23:11053663-11053851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):8, 77

               
               
               Conread position:28-290
               
               
               Cow position:chr23:2471232-2470974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):115, 18

               
               
               Conread position:28-383
               
               
               Cow position:chr23:35239583-35239228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):154, 24

               
               
               Conread position:29-265
               
               
               Cow position:chr23:5395249-5395478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):30, 100

               
               
               Conread position:29-274
               
               
               Cow position:chr23:1653232-1652989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):88, 23

               
               
               Conread position:29-364
               
               
               Cow position:chr23:3522976-3522651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 123

               
               
               Conread position:29-368
               
               
               Cow position:chr23:19173125-19173458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):101, 24

               
               
               Conread position:29-378
               
               
               Cow position:chr23:5436410-5436756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):110, 24

               
               
               Conread position:29-384
               
               
               Cow position:chr23:34611263-34611592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):11, 25

               
               
               Conread position:30-249
               
               
               Cow position:chr23:39109166-39108946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 35

               
               
               Conread position:30-282
               
               
               Cow position:chr23:37041355-37041607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):124, 75

               
               
               Conread position:30-365
               
               
               Cow position:chr23:18036419-18036760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):44, 134

               
               
               Conread position:31-216
               
               
               Cow position:chr23:40965748-40965935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):116, 156

               
               
               Conread position:31-229
               
               
               Cow position:chr23:35527316-35527112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):30, 56

               
               
               Conread position:31-238
               
               
               Cow position:chr23:1510699-1510902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:31-272
               
               
               Cow position:chr23:4003882-4003634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):29, 141

               
               
               Conread position:31-373
               
               
               Cow position:chr23:30585419-30585772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:31-378
               
               
               Cow position:chr23:4968299-4968636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):35, 62

               
               
               Conread position:31-379
               
               
               Cow position:chr23:307687-307341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):115, 22

               
               
               Conread position:31-384
               
               
               Cow position:chr23:1290538-1290174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 251

               
               
               Conread position:31-384
               
               
               Cow position:chr23:2317013-2316674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):17, 36

               
               
               Conread position:32-248
               
               
               Cow position:chr23:39864885-39864667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):90, 33

               
               
               Conread position:32-271
               
               
               Cow position:chr23:32621517-32621274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):95, 33

               
               
               Conread position:32-282
               
               
               Cow position:chr23:25676391-25676641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):114, 21

               
               
               Conread position:32-349
               
               
               Cow position:chr23:16780330-16780636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):112, 18

               
               
               Conread position:32-378
               
               
               Cow position:chr23:36244574-36244234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):140, 33

               
               
               Conread position:32-384
               
               
               Cow position:chr23:10829353-10829704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):156, 17

               
               
               Conread position:32-384
               
               
               Cow position:chr23:11081493-11081136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):28, 170

               
               
               Conread position:33-265
               
               
               Cow position:chr23:25968642-25968422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:33-291
               
               
               Cow position:chr23:7312055-7311791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:33-331
               
               
               Cow position:chr23:11771204-11770914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):226, 20

               
               
               Conread position:33-378
               
               
               Cow position:chr23:1656121-1655779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:241
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:34-315
               
               
               Cow position:chr23:14140841-14140554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):52, 134

               
               
               Conread position:34-381
               
               
               Cow position:chr23:26986042-26986390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 60

               
               
               Conread position:34-384
               
               
               Cow position:chr23:8063750-8063434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):229, 20

               
               
               Conread position:34-384
               
               
               Cow position:chr23:9226494-9226152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:35-246
               
               
               Cow position:chr23:28814603-28814392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):96, 27

               
               
               Conread position:35-326
               
               
               Cow position:chr23:10377128-10377408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 18

               
               
               Conread position:36-273
               
               
               Cow position:chr23:26741263-26741502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):28, 48

               
               
               Conread position:36-347
               
               
               Cow position:chr23:38264305-38264618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):118, 17

               
               
               Conread position:36-384
               
               
               Cow position:chr23:26794688-26795031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):226, 28

               
               
               Conread position:37-257
               
               
               Cow position:chr23:24809217-24809432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):173, 17

               
               
               Conread position:37-368
               
               
               Cow position:chr23:40329928-40330260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):109, 27

               
               
               Conread position:37-384
               
               
               Cow position:chr23:16744768-16744426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:37-384
               
               
               Cow position:chr23:34416788-34416439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):121, 39

               
               
               Conread position:38-238
               
               
               Cow position:chr23:4416063-4416263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:38-282
               
               
               Cow position:chr23:39268006-39267764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):133, 13

               
               
               Conread position:38-289
               
               
               Cow position:chr23:8698649-8698394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 251

               
               
               Conread position:38-346
               
               
               Cow position:chr23:18238302-18238610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):116, 15

               
               
               Conread position:38-378
               
               
               Cow position:chr23:3244693-3245031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:39-262
               
               
               Cow position:chr23:1480865-1480639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 138

               
               
               Conread position:39-271
               
               
               Cow position:chr23:35656633-35656402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):16, 179

               
               
               Conread position:39-339
               
               
               Cow position:chr23:33629144-33628849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):130, 25

               
               
               Conread position:39-368
               
               
               Cow position:chr23:25363795-25363477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):115, 13

               
               
               Conread position:39-384
               
               
               Cow position:chr23:29626655-29626293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 144

               
               
               Conread position:40-243
               
               
               Cow position:chr23:23104268-23104467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:161
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):21, 13

               
               
               Conread position:40-256
               
               
               Cow position:chr23:22530213-22530432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:40-344
               
               
               Cow position:chr23:22297806-22298117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):13, 189

               
               
               Conread position:40-384
               
               
               Cow position:chr23:3247809-3247463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):114, 13

               
               
               Conread position:40-384
               
               
               Cow position:chr23:6244379-6244705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 88

               
               
               Conread position:41-282
               
               
               Cow position:chr23:22238599-22238842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):98, 51

               
               
               Conread position:41-378
               
               
               Cow position:chr23:7175837-7175507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:41-383
               
               
               Cow position:chr23:15743312-15742971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 76

               
               
               Conread position:42-382
               
               
               Cow position:chr23:1585179-1585505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):198, 101

               
               
               Conread position:42-384
               
               
               Cow position:chr23:2281969-2282296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 15

               
               
               Conread position:42-385
               
               
               Cow position:chr23:7845512-7845169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 53

               
               
               Conread position:43-286
               
               
               Cow position:chr23:22668291-22668531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):14, 86

               
               
               Conread position:43-332
               
               
               Cow position:chr23:26841641-26841356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 108

               
               
               Conread position:43-384
               
               
               Cow position:chr23:3394277-3394615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 99

               
               
               Conread position:43-384
               
               
               Cow position:chr23:25864475-25864809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):101, 126

               
               
               Conread position:44-238
               
               
               Cow position:chr23:29330532-29330332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):13, 147

               
               
               Conread position:45-244
               
               
               Cow position:chr23:20596373-20596576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):75, 19

               
               
               Conread position:45-384
               
               
               Cow position:chr23:33152981-33153311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):89, 10

               
               
               Conread position:46-257
               
               
               Cow position:chr23:38854371-38854584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 108

               
               
               Conread position:46-350
               
               
               Cow position:chr23:29521689-29521384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):136, 18

               
               
               Conread position:46-384
               
               
               Cow position:chr23:1536535-1536202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 19

               
               
               Conread position:47-348
               
               
               Cow position:chr23:27860005-27859710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:47-384
               
               
               Cow position:chr23:4727006-4726665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):164, 18

               
               
               Conread position:47-384
               
               
               Cow position:chr23:12471144-12470816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):130, 17

               
               
               Conread position:47-384
               
               
               Cow position:chr23:39340217-39339886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 210

               
               
               Conread position:48-258
               
               
               Cow position:chr23:18221841-18222052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:48-273
               
               
               Cow position:chr23:37660881-37660661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:48-331
               
               
               Cow position:chr23:18384932-18384653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:48-348
               
               
               Cow position:chr23:10416213-10416504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):18, 82

               
               
               Conread position:48-378
               
               
               Cow position:chr23:8837477-8837801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:48-378
               
               
               Cow position:chr23:14394881-14394555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):102, 17

               
               
               Conread position:49-251
               
               
               Cow position:chr23:10815741-10815945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):11, 64

               
               
               Conread position:49-282
               
               
               Cow position:chr23:23197538-23197326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):215, 15

               
               
               Conread position:49-377
               
               
               Cow position:chr23:11129449-11129123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 64

               
               
               Conread position:49-378
               
               
               Cow position:chr23:34356855-34356528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):10, 148

               
               
               Conread position:49-384
               
               
               Cow position:chr23:1337094-1337423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):97, 128

               
               
               Conread position:49-384
               
               
               Cow position:chr23:1883605-1883272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 15

               
               
               Conread position:49-384
               
               
               Cow position:chr23:1884961-1885294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):215, 8

               
               
               Conread position:49-384
               
               
               Cow position:chr23:5723740-5723422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):82, 16

               
               
               Conread position:49-384
               
               
               Cow position:chr23:39778610-39778284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):215, 40

               
               
               Conread position:50-241
               
               
               Cow position:chr23:665568-665764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 140

               
               
               Conread position:50-245
               
               
               Cow position:chr23:18417289-18417110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:50-258
               
               
               Cow position:chr23:33434874-33434667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:50-272
               
               
               Cow position:chr23:14895476-14895684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):214, 69

               
               
               Conread position:50-291
               
               
               Cow position:chr23:28574919-28574680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:50-329
               
               
               Cow position:chr23:18823196-18822925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):211, 72

               
               
               Conread position:50-376
               
               
               Cow position:chr23:11212717-11212392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):14, 92

               
               
               Conread position:50-377
               
               
               Cow position:chr23:25884177-25883838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):97, 14

               
               
               Conread position:50-378
               
               
               Cow position:chr23:35149964-35149637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 214

               
               
               Conread position:50-383
               
               
               Cow position:chr23:12091148-12091480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):121, 33

               
               
               Conread position:50-383
               
               
               Cow position:chr23:29243144-29242829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):106, 73

               
               
               Conread position:50-384
               
               
               Cow position:chr23:534438-534107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 96

               
               
               Conread position:50-384
               
               
               Cow position:chr23:1438490-1438175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 84

               
               
               Conread position:50-384
               
               
               Cow position:chr23:1942946-1942606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:226
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):99, 30

               
               
               Conread position:50-384
               
               
               Cow position:chr23:5162654-5162304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):74, 194

               
               
               Conread position:50-384
               
               
               Cow position:chr23:13520655-13520328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):128, 15

               
               
               Conread position:50-384
               
               
               Cow position:chr23:16689853-16690179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):104, 136

               
               
               Conread position:50-384
               
               
               Cow position:chr23:18901853-18902169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):11, 73

               
               
               Conread position:50-384
               
               
               Cow position:chr23:37898129-37897794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):190, 117

               
               
               Conread position:50-387
               
               
               Cow position:chr23:799454-799792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):96, 183

               
               
               Conread position:50-390
               
               
               Cow position:chr23:25675486-25675831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:52-218
               
               
               Cow position:chr23:41478088-41477923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):15, 95

               
               
               Conread position:52-232
               
               
               Cow position:chr23:33702181-33702364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):94, 168

               
               
               Conread position:52-238
               
               
               Cow position:chr23:1429622-1429801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):12, 75

               
               
               Conread position:52-327
               
               
               Cow position:chr23:40995372-40995107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:205
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):212, 12

               
               
               Conread position:52-330
               
               
               Cow position:chr23:1863670-1863404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):64, 39

               
               
               Conread position:52-341
               
               
               Cow position:chr23:20539589-20539304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 77

               
               
               Conread position:52-345
               
               
               Cow position:chr23:14524206-14523901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):75, 12

               
               
               Conread position:52-371
               
               
               Cow position:chr23:40095392-40095089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):45, 88

               
               
               Conread position:52-384
               
               
               Cow position:chr23:3967342-3967673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):9, 23

               
               
               Conread position:53-204
               
               
               Cow position:chr23:2511355-2511204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 91

               
               
               Conread position:53-225
               
               
               Cow position:chr23:85297-85131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:53-230
               
               
               Cow position:chr23:20725482-20725655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:53-272
               
               
               Cow position:chr23:41348419-41348634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):211, 75

               
               
               Conread position:53-274
               
               
               Cow position:chr23:17597631-17597414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):211, 38

               
               
               Conread position:53-281
               
               
               Cow position:chr23:28798299-28798058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):74, 200

               
               
               Conread position:53-282
               
               
               Cow position:chr23:4844821-4844586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):147, 113

               
               
               Conread position:53-317
               
               
               Cow position:chr23:7956643-7956906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):71, 11

               
               
               Conread position:53-332
               
               
               Cow position:chr23:32167240-32166950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):65, 75

               
               
               Conread position:53-347
               
               
               Cow position:chr23:26848686-26848992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:53-348
               
               
               Cow position:chr23:3293898-3293606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 74

               
               
               Conread position:53-373
               
               
               Cow position:chr23:22573698-22574027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):85, 11

               
               
               Conread position:53-383
               
               
               Cow position:chr23:22414100-22414414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):62, 85

               
               
               Conread position:53-384
               
               
               Cow position:chr23:18802058-18802395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):81, 107

               
               
               Conread position:53-384
               
               
               Cow position:chr23:24704493-24704159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:53-384
               
               
               Cow position:chr23:40778474-40778144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):7, 40

               
               
               Conread position:53-387
               
               
               Cow position:chr23:40790174-40789853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):118, 73

               
               
               Conread position:54-234
               
               
               Cow position:chr23:18822224-18822404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):90, 170

               
               
               Conread position:54-235
               
               
               Cow position:chr23:16647533-16647350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):93, 133

               
               
               Conread position:54-271
               
               
               Cow position:chr23:39330085-39330302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:54-377
               
               
               Cow position:chr23:16582701-16583024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:54-378
               
               
               Cow position:chr23:10853255-10852936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):92, 47

               
               
               Conread position:54-384
               
               
               Cow position:chr23:5426645-5426309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:54-384
               
               
               Cow position:chr23:16880962-16881284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 73

               
               
               Conread position:55-233
               
               
               Cow position:chr23:5215705-5215887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):101, 139

               
               
               Conread position:55-300
               
               
               Cow position:chr23:20093034-20093278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 116

               
               
               Conread position:56-252
               
               
               Cow position:chr23:3204992-3204789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 139

               
               
               Conread position:56-262
               
               
               Cow position:chr23:9131758-9131961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):204, 54

               
               
               Conread position:56-346
               
               
               Cow position:chr23:19872494-19872758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):208, 35

               
               
               Conread position:57-240
               
               
               Cow position:chr23:35930153-35929973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:57-244
               
               
               Cow position:chr23:2395393-2395579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:57-244
               
               
               Cow position:chr23:4979078-4979263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 90

               
               
               Conread position:57-244
               
               
               Cow position:chr23:15056371-15056553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:57-246
               
               
               Cow position:chr23:1490559-1490378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):31, 72

               
               
               Conread position:57-247
               
               
               Cow position:chr23:9387825-9388013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):79, 126

               
               
               Conread position:57-260
               
               
               Cow position:chr23:7155496-7155690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:57-274
               
               
               Cow position:chr23:1877692-1877908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):129, 95

               
               
               Conread position:57-274
               
               
               Cow position:chr23:40500891-40501110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):9, 113

               
               
               Conread position:57-280
               
               
               Cow position:chr23:4090626-4090409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 150

               
               
               Conread position:57-283
               
               
               Cow position:chr23:1760628-1760867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:57-324
               
               
               Cow position:chr23:1533105-1532844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:57-329
               
               
               Cow position:chr23:1981468-1981721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):207, 35

               
               
               Conread position:57-348
               
               
               Cow position:chr23:3223237-3223522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):63, 162

               
               
               Conread position:57-382
               
               
               Cow position:chr23:26949396-26949079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):251, 65

               
               
               Conread position:57-384
               
               
               Cow position:chr23:4505017-4504709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:57-384
               
               
               Cow position:chr23:4646712-4646395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):207, 64

               
               
               Conread position:57-384
               
               
               Cow position:chr23:9734625-9734292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):85, 180

               
               
               Conread position:57-384
               
               
               Cow position:chr23:18286388-18286076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 79

               
               
               Conread position:57-384
               
               
               Cow position:chr23:33601328-33601650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):68, 171

               
               
               Conread position:57-384
               
               
               Cow position:chr23:37066061-37065719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:57-384
               
               
               Cow position:chr23:38454958-38455304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):71, 260

               
               
               Conread position:57-384
               
               
               Cow position:chr23:39753306-39752996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):207, 17

               
               
               Conread position:58-249
               
               
               Cow position:chr23:13137735-13137922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):113, 84

               
               
               Conread position:58-250
               
               
               Cow position:chr23:5685992-5686184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:58-252
               
               
               Cow position:chr23:36200603-36200415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:58-272
               
               
               Cow position:chr23:18739257-18739475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:58-275
               
               
               Cow position:chr23:1719859-1719649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):86, 68

               
               
               Conread position:58-348
               
               
               Cow position:chr23:24927030-24926726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):80, 46

               
               
               Conread position:58-372
               
               
               Cow position:chr23:1222037-1222349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 44

               
               
               Conread position:58-384
               
               
               Cow position:chr23:38234-37915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 48

               
               
               Conread position:58-384
               
               
               Cow position:chr23:5451526-5451203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 203

               
               
               Conread position:58-384
               
               
               Cow position:chr23:12334426-12334085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):58, 165

               
               
               Conread position:58-384
               
               
               Cow position:chr23:32479813-32480158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:58-387
               
               
               Cow position:chr23:29786139-29786475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):89, 118

               
               
               Conread position:59-231
               
               
               Cow position:chr23:4291560-4291386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):90, 128

               
               
               Conread position:59-331
               
               
               Cow position:chr23:35965352-35965074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:59-341
               
               
               Cow position:chr23:11225057-11224779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):112, 90

               
               
               Conread position:59-368
               
               
               Cow position:chr23:33570334-33570030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):106, 69

               
               
               Conread position:59-383
               
               
               Cow position:chr23:1583720-1583410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):203, 62

               
               
               Conread position:59-383
               
               
               Cow position:chr23:14164173-14164522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:59-383
               
               
               Cow position:chr23:20248491-20248817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):90, 73

               
               
               Conread position:59-384
               
               
               Cow position:chr23:4498929-4499254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):45, 118

               
               
               Conread position:59-384
               
               
               Cow position:chr23:8293713-8293382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):77, 125

               
               
               Conread position:59-384
               
               
               Cow position:chr23:24509887-24509580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 83

               
               
               Conread position:59-384
               
               
               Cow position:chr23:29345574-29345878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):205, 69

               
               
               Conread position:59-386
               
               
               Cow position:chr23:6147850-6148181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):117, 63

               
               
               Conread position:59-387
               
               
               Cow position:chr23:16246942-16246609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):16, 70

               
               
               Conread position:60-249
               
               
               Cow position:chr23:30867097-30867285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):104, 125

               
               
               Conread position:60-252
               
               
               Cow position:chr23:809709-809516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 126

               
               
               Conread position:60-256
               
               
               Cow position:chr23:24718601-24718795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:60-259
               
               
               Cow position:chr23:10888470-10888278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 100

               
               
               Conread position:60-261
               
               
               Cow position:chr23:6179346-6179545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):194, 34

               
               
               Conread position:60-274
               
               
               Cow position:chr23:1194293-1194504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):204, 81

               
               
               Conread position:60-305
               
               
               Cow position:chr23:30244727-30244496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):204, 76

               
               
               Conread position:60-309
               
               
               Cow position:chr23:3279267-3279506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):120, 79

               
               
               Conread position:60-332
               
               
               Cow position:chr23:16961488-16961226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):204, 61

               
               
               Conread position:60-332
               
               
               Cow position:chr23:18748874-18749135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):131, 59

               
               
               Conread position:60-351
               
               
               Cow position:chr23:40391677-40391388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):202, 85

               
               
               Conread position:60-367
               
               
               Cow position:chr23:24685442-24685147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 86

               
               
               Conread position:60-382
               
               
               Cow position:chr23:33711964-33711642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):86, 128

               
               
               Conread position:60-384
               
               
               Cow position:chr23:1776451-1776751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):89, 48

               
               
               Conread position:60-384
               
               
               Cow position:chr23:2501655-2501975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 86

               
               
               Conread position:60-384
               
               
               Cow position:chr23:5617777-5617454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):89, 126

               
               
               Conread position:60-384
               
               
               Cow position:chr23:5732739-5732428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 31

               
               
               Conread position:60-384
               
               
               Cow position:chr23:20744380-20744713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 250

               
               
               Conread position:61-234
               
               
               Cow position:chr23:13410560-13410727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:61-240
               
               
               Cow position:chr23:16664202-16664379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:61-244
               
               
               Cow position:chr23:33232499-33232683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):88, 115

               
               
               Conread position:61-339
               
               
               Cow position:chr23:5881320-5881595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 80

               
               
               Conread position:61-368
               
               
               Cow position:chr23:20557641-20557951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):85, 110

               
               
               Conread position:61-382
               
               
               Cow position:chr23:3281909-3282235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):66, 281

               
               
               Conread position:61-384
               
               
               Cow position:chr23:12363418-12363740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 91

               
               
               Conread position:62-328
               
               
               Cow position:chr23:39049240-39049501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:62-361
               
               
               Cow position:chr23:3190927-3191225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):208, 17

               
               
               Conread position:62-365
               
               
               Cow position:chr23:10497896-10497606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):59, 74

               
               
               Conread position:62-384
               
               
               Cow position:chr23:5795676-5795356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 84

               
               
               Conread position:62-384
               
               
               Cow position:chr23:8923799-8923485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):103, 64

               
               
               Conread position:62-384
               
               
               Cow position:chr23:35938528-35938220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):202, 17

               
               
               Conread position:63-251
               
               
               Cow position:chr23:32126504-32126316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):83, 120

               
               
               Conread position:64-236
               
               
               Cow position:chr23:5603549-5603719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:64-267
               
               
               Cow position:chr23:12405623-12405825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):200, 49

               
               
               Conread position:64-366
               
               
               Cow position:chr23:22804920-22804622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):102, 15

               
               
               Conread position:64-377
               
               
               Cow position:chr23:283204-283502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):200, 28

               
               
               Conread position:64-384
               
               
               Cow position:chr23:20194732-20195039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):310, 48

               
               
               Conread position:65-384
               
               
               Cow position:chr23:11314820-11315145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):71, 265

               
               
               Conread position:68-331
               
               
               Cow position:chr23:40637458-40637187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):59, 50

               
               
               Conread position:68-332
               
               
               Cow position:chr23:24700882-24701160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 160

               
               
               Conread position:68-384
               
               
               Cow position:chr23:41472819-41472492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):66, 98

               
               
               Conread position:69-255
               
               
               Cow position:chr23:5927429-5927608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 77

               
               
               Conread position:69-258
               
               
               Cow position:chr23:4343677-4343486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):75, 111

               
               
               Conread position:69-269
               
               
               Cow position:chr23:21423959-21423761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:69-378
               
               
               Cow position:chr23:18415864-18416162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):77, 22

               
               
               Conread position:69-384
               
               
               Cow position:chr23:5436808-5437120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):77, 115

               
               
               Conread position:70-309
               
               
               Cow position:chr23:2160450-2160682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):196, 59

               
               
               Conread position:72-255
               
               
               Cow position:chr23:36022602-36022777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:72-261
               
               
               Cow position:chr23:5447935-5448124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:72-281
               
               
               Cow position:chr23:14351015-14350806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 23

               
               
               Conread position:72-290
               
               
               Cow position:chr23:22587068-22586852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):192, 69

               
               
               Conread position:72-325
               
               
               Cow position:chr23:13202181-13202424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):191, 35

               
               
               Conread position:72-366
               
               
               Cow position:chr23:15280305-15280602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:72-376
               
               
               Cow position:chr23:40348456-40348755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):187, 65

               
               
               Conread position:72-378
               
               
               Cow position:chr23:349531-349840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):82, 114

               
               
               Conread position:72-382
               
               
               Cow position:chr23:2286014-2285728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):131, 42

               
               
               Conread position:72-383
               
               
               Cow position:chr23:26779484-26779790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):92, 103

               
               
               Conread position:73-280
               
               
               Cow position:chr23:4501931-4501734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):191, 16

               
               
               Conread position:73-384
               
               
               Cow position:chr23:26632989-26632681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):164, 22

               
               
               Conread position:74-348
               
               
               Cow position:chr23:2359064-2358806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):142, 28

               
               
               Conread position:74-351
               
               
               Cow position:chr23:19221453-19221732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):114, 133

               
               
               Conread position:75-368
               
               
               Cow position:chr23:33599120-33599401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):177, 93

               
               
               Conread position:76-384
               
               
               Cow position:chr23:9599674-9599374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):21, 37

               
               
               Conread position:76-384
               
               
               Cow position:chr23:21452546-21452853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:79-331
               
               
               Cow position:chr23:29021850-29021597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):63, 49

               
               
               Conread position:79-384
               
               
               Cow position:chr23:468281-468582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:81-350
               
               
               Cow position:chr23:24944462-24944737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 74

               
               
               Conread position:83-384
               
               
               Cow position:chr23:16631451-16631146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):64, 93

               
               
               Conread position:86-384
               
               
               Cow position:chr23:6768085-6767769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:89-332
               
               
               Cow position:chr23:26825235-26825008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):175, 48

               
               
               Conread position:89-378
               
               
               Cow position:chr23:21446286-21446004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):175, 52

               
               
               Conread position:90-346
               
               
               Cow position:chr23:14462686-14462429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):64, 86

               
               
               Conread position:90-382
               
               
               Cow position:chr23:1701346-1701051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:91-384
               
               
               Cow position:chr23:8006417-8006118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):37, 69

               
               
               Conread position:92-384
               
               
               Cow position:chr23:20056712-20056988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):172, 59

               
               
               Conread position:95-256
               
               
               Cow position:chr23:14191937-14191780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:95-378
               
               
               Cow position:chr23:7835317-7835606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):77, 48

               
               
               Conread position:95-388
               
               
               Cow position:chr23:1490205-1489925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 82

               
               
               Conread position:96-237
               
               
               Cow position:chr23:14753396-14753261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:96-366
               
               
               Cow position:chr23:6367763-6367502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):168, 30

               
               
               Conread position:98-378
               
               
               Cow position:chr23:306689-306409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 252

               
               
               Conread position:98-381
               
               
               Cow position:chr23:16797639-16797929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):58, 39

               
               
               Conread position:99-384
               
               
               Cow position:chr23:39775888-39775608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:105-292
               
               
               Cow position:chr23:5786001-5785816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):22, 48

               
               
               Conread position:109-384
               
               
               Cow position:chr23:5540298-5540040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):155, 33

               
               
               Conread position:112-383
               
               
               Cow position:chr23:21765066-21764797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 33

               
               
               Conread position:124-345
               
               
               Cow position:chr23:26722113-26721890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:128-282
               
               
               Cow position:chr23:3814146-3814301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:128-334
               
               
               Cow position:chr23:22105693-22105489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):137, 24

               
               
               Conread position:128-365
               
               
               Cow position:chr23:18404138-18403904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):134, 19

               
               
               Conread position:128-375
               
               
               Cow position:chr23:39276029-39275777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:128-378
               
               
               Cow position:chr23:33622017-33622266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 31

               
               
               Conread position:128-384
               
               
               Cow position:chr23:11473369-11473626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):27, 47

               
               
               Conread position:128-384
               
               
               Cow position:chr23:16076032-16076281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):112, 23

               
               
               Conread position:128-385
               
               
               Cow position:chr23:3408770-3409027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):68, 204

               
               
               Conread position:129-383
               
               
               Cow position:chr23:18402157-18402410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):135, 22

               
               
               Conread position:129-384
               
               
               Cow position:chr23:1923704-1923958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):135, 26

               
               
               Conread position:129-384
               
               
               Cow position:chr23:9268713-9268471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):135, 92

               
               
               Conread position:130-378
               
               
               Cow position:chr23:1397908-1398150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):134, 22

               
               
               Conread position:130-384
               
               
               Cow position:chr23:24867438-24867184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):134, 16

               
               
               Conread position:131-280
               
               
               Cow position:chr23:5449837-5449687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 49

               
               
               Conread position:131-290
               
               
               Cow position:chr23:17231278-17231121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):134, 20

               
               
               Conread position:131-318
               
               
               Cow position:chr23:3244339-3244522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:131-345
               
               
               Cow position:chr23:21439871-21440084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-348
               
               
               Cow position:chr23:20002383-20002169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):133, 14

               
               
               Conread position:131-378
               
               
               Cow position:chr23:1254819-1254574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 45

               
               
               Conread position:131-378
               
               
               Cow position:chr23:13946169-13945920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):133, 86

               
               
               Conread position:131-378
               
               
               Cow position:chr23:21336352-21336602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):11, 21

               
               
               Conread position:131-378
               
               
               Cow position:chr23:38208856-38208608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-379
               
               
               Cow position:chr23:18296937-18296692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):134, 20

               
               
               Conread position:131-382
               
               
               Cow position:chr23:4336198-4335958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:131-382
               
               
               Cow position:chr23:33717413-33717660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):169, 20

               
               
               Conread position:131-383
               
               
               Cow position:chr23:13511855-13511615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):87, 28

               
               
               Conread position:131-384
               
               
               Cow position:chr23:1701020-1700792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):131, 16

               
               
               Conread position:131-384
               
               
               Cow position:chr23:21502499-21502759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 218

               
               
               Conread position:132-268
               
               
               Cow position:chr23:18605276-18605413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:132-384
               
               
               Cow position:chr23:2487862-2488103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:132-384
               
               
               Cow position:chr23:3433784-3434032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:132-384
               
               
               Cow position:chr23:4528751-4529005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):132, 14

               
               
               Conread position:132-384
               
               
               Cow position:chr23:5707124-5706878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):135, 167

               
               
               Conread position:132-384
               
               
               Cow position:chr23:29034443-29034195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:186
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):133, 27

               
               
               Conread position:132-384
               
               
               Cow position:chr23:30951084-30950838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:133-384
               
               
               Cow position:chr23:1767960-1767707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):29, 50

               
               
               Conread position:134-384
               
               
               Cow position:chr23:4104522-4104282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:134-384
               
               
               Cow position:chr23:10553880-10554130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):166, 143

               
               
               Conread position:134-384
               
               
               Cow position:chr23:36172651-36172400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):67, 17

               
               
               Conread position:136-384
               
               
               Cow position:chr23:23409858-23409617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):128, 15

               
               
               Conread position:136-404
               
               
               Cow position:chr23:40844778-40844512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 53

               
               
               Conread position:137-331
               
               
               Cow position:chr23:35368923-35369114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):127, 7

               
               
               Conread position:138-348
               
               
               Cow position:chr23:2799708-2799496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):18, 153

               
               
               Conread position:138-384
               
               
               Cow position:chr23:13599465-13599223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):126, 101

               
               
               Conread position:140-354
               
               
               Cow position:chr23:1697796-1697585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 82

               
               
               Conread position:145-378
               
               
               Cow position:chr23:4966936-4966705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):117, 73

               
               
               Conread position:146-330
               
               
               Cow position:chr23:348831-349018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:146-345
               
               
               Cow position:chr23:3830084-3830282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):118, 22

               
               
               Conread position:146-376
               
               
               Cow position:chr23:1876828-1876597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):118, 148

               
               
               Conread position:146-378
               
               
               Cow position:chr23:16699925-16700154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):118, 137

               
               
               Conread position:146-384
               
               
               Cow position:chr23:1742470-1742234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):122, 65

               
               
               Conread position:146-384
               
               
               Cow position:chr23:17404955-17404717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):123, 41

               
               
               Conread position:146-384
               
               
               Cow position:chr23:29458982-29459211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:183
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):118, 132

               
               
               Conread position:147-325
               
               
               Cow position:chr23:1589705-1589523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:147-355
               
               
               Cow position:chr23:29069325-29069535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:147-378
               
               
               Cow position:chr23:6592593-6592815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):120, 8

               
               
               Conread position:147-384
               
               
               Cow position:chr23:1720867-1721106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):39, 31

               
               
               Conread position:147-384
               
               
               Cow position:chr23:11045602-11045364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):48, 74

               
               
               Conread position:147-384
               
               
               Cow position:chr23:19774884-19774652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:147-384
               
               
               Cow position:chr23:40891478-40891238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:151-384
               
               
               Cow position:chr23:10014638-10014417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:152-346
               
               
               Cow position:chr23:5237309-5237512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):98, 193

               
               
               Conread position:152-369
               
               
               Cow position:chr23:4795280-4795066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):115, 64

               
               
               Conread position:153-352
               
               
               Cow position:chr23:1403696-1403894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):111, 132

               
               
               Conread position:155-384
               
               
               Cow position:chr23:20171688-20171454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 20

               
               
               Conread position:155-397
               
               
               Cow position:chr23:26051146-26050903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):109, 237

               
               
               Conread position:156-384
               
               
               Cow position:chr23:27544934-27544707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):110, 129

               
               
               Conread position:156-397
               
               
               Cow position:chr23:11845382-11845141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):126, 27

               
               
               Conread position:161-332
               
               
               Cow position:chr23:4470398-4470571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):104, 66

               
               
               Conread position:165-366
               
               
               Cow position:chr23:4562983-4562782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):99, 120

               
               
               Conread position:167-385
               
               
               Cow position:chr23:39806965-39806746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):95, 52

               
               
               Conread position:174-378
               
               
               Cow position:chr23:15709983-15710188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 118

               
               
               Conread position:174-382
               
               
               Cow position:chr23:19370986-19371190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):90, 115

               
               
               Conread position:179-384
               
               
               Cow position:chr23:4329591-4329803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:179-384
               
               
               Cow position:chr23:4980463-4980667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):82, 32

               
               
               Conread position:180-384
               
               
               Cow position:chr23:25378729-25378532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 38

               
               
               Conread position:181-384
               
               
               Cow position:chr23:1647699-1647497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:183-382
               
               
               Cow position:chr23:16563918-16563721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):64, 107

               
               
               Conread position:186-325
               
               
               Cow position:chr23:5400745-5400603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 100

               
               
               Conread position:186-384
               
               
               Cow position:chr23:1634758-1634563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):78, 44

               
               
               Conread position:191-384
               
               
               Cow position:chr23:1921155-1921349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):73, 94

               
               
               Conread position:194-384
               
               
               Cow position:chr23:28945000-28945186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):71, 91

               
               
               Conread position:205-383
               
               
               Cow position:chr23:3918037-3918218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):14, 44

               
               
               Conread position:209-384
               
               
               Cow position:chr23:2055758-2055584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:215-384
               
               
               Cow position:chr23:2801635-2801806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 70

               
               
               Conread position:224-348
               
               
               Cow position:chr23:23104678-23104805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:228-384
               
               
               Cow position:chr23:16664535-16664688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 120

               
               
               Conread position:1-274
               
               
               Cow position:chr24:42226497-42226234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):263, 26

               
               
               Conread position:1-347
               
               
               Cow position:chr24:14551021-14550682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):258, 48

               
               
               Conread position:2-362
               
               
               Cow position:chr24:13626514-13626159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):132, 52

               
               
               Conread position:2-384
               
               
               Cow position:chr24:6928319-6928694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:248
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):152, 174

               
               
               Conread position:2-384
               
               
               Cow position:chr24:22689336-22689730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):20, 189

               
               
               Conread position:3-355
               
               
               Cow position:chr24:37267892-37267542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):18, 45

               
               
               Conread position:4-252
               
               
               Cow position:chr24:27553336-27553079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:4-340
               
               
               Cow position:chr24:230515-230172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 122

               
               
               Conread position:8-235
               
               
               Cow position:chr24:30325561-30325783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):27, 43

               
               
               Conread position:8-373
               
               
               Cow position:chr24:28690912-28690551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):11, 30

               
               
               Conread position:10-347
               
               
               Cow position:chr24:15353667-15353343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):144, 13

               
               
               Conread position:10-388
               
               
               Cow position:chr24:23863402-23863786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:260
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):14, 18

               
               
               Conread position:11-238
               
               
               Cow position:chr24:25082655-25082899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:11-384
               
               
               Cow position:chr24:37025242-37024875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 55

               
               
               Conread position:12-239
               
               
               Cow position:chr24:22420180-22419957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):125, 36

               
               
               Conread position:12-240
               
               
               Cow position:chr24:24165767-24165537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:12-384
               
               
               Cow position:chr24:37650890-37650522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:17-272
               
               
               Cow position:chr24:35310944-35310684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:17-384
               
               
               Cow position:chr24:38347892-38347534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):109, 39

               
               
               Conread position:18-384
               
               
               Cow position:chr24:39483678-39483329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 5

               
               
               Conread position:25-384
               
               
               Cow position:chr24:18356846-18357201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 55

               
               
               Conread position:26-257
               
               
               Cow position:chr24:35029852-35030082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:26-365
               
               
               Cow position:chr24:26880967-26880637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):40, 140

               
               
               Conread position:27-272
               
               
               Cow position:chr24:11028477-11028722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):32, 145

               
               
               Conread position:27-384
               
               
               Cow position:chr24:5142148-5141796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 61

               
               
               Conread position:27-384
               
               
               Cow position:chr24:19179227-19179595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):37, 159

               
               
               Conread position:28-272
               
               
               Cow position:chr24:34896499-34896735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:28-273
               
               
               Cow position:chr24:34079126-34079377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 180

               
               
               Conread position:28-342
               
               
               Cow position:chr24:18615224-18614893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 168

               
               
               Conread position:28-343
               
               
               Cow position:chr24:21606471-21606778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):118, 25

               
               
               Conread position:28-371
               
               
               Cow position:chr24:19000252-18999919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):32, 142

               
               
               Conread position:29-231
               
               
               Cow position:chr24:34772096-34772308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:29-265
               
               
               Cow position:chr24:36286771-36286540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:29-305
               
               
               Cow position:chr24:2380163-2379888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):29, 21

               
               
               Conread position:29-333
               
               
               Cow position:chr24:9222179-9222482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):120, 45

               
               
               Conread position:29-384
               
               
               Cow position:chr24:18344268-18343901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):125, 20

               
               
               Conread position:29-384
               
               
               Cow position:chr24:18484785-18485145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 145

               
               
               Conread position:30-272
               
               
               Cow position:chr24:29539723-29539965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:30-328
               
               
               Cow position:chr24:33372751-33372466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):234, 109

               
               
               Conread position:30-332
               
               
               Cow position:chr24:25756095-25756393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):119, 23

               
               
               Conread position:31-241
               
               
               Cow position:chr24:28775353-28775563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):116, 34

               
               
               Conread position:31-275
               
               
               Cow position:chr24:13888914-13888664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 145

               
               
               Conread position:31-340
               
               
               Cow position:chr24:41406098-41405793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):107, 61

               
               
               Conread position:31-368
               
               
               Cow position:chr24:44809441-44809117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):229, 22

               
               
               Conread position:31-385
               
               
               Cow position:chr24:27149587-27149245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:31-404
               
               
               Cow position:chr24:36711396-36711036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:244
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):109, 19

               
               
               Conread position:32-330
               
               
               Cow position:chr24:13948323-13948027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 18

               
               
               Conread position:32-348
               
               
               Cow position:chr24:17407589-17407276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):122, 39

               
               
               Conread position:32-378
               
               
               Cow position:chr24:25321188-25320854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):227, 141

               
               
               Conread position:32-384
               
               
               Cow position:chr24:18731903-18732271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):20, 62

               
               
               Conread position:32-384
               
               
               Cow position:chr24:31812388-31812040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):20, 26

               
               
               Conread position:32-384
               
               
               Cow position:chr24:40301365-40301011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):23, 150

               
               
               Conread position:33-250
               
               
               Cow position:chr24:27940421-27940635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):25, 112

               
               
               Conread position:33-255
               
               
               Cow position:chr24:29677709-29677935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:33-308
               
               
               Cow position:chr24:7846495-7846768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):153, 31

               
               
               Conread position:33-317
               
               
               Cow position:chr24:10536557-10536272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):133, 141

               
               
               Conread position:33-332
               
               
               Cow position:chr24:28303159-28303463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):28, 113

               
               
               Conread position:33-383
               
               
               Cow position:chr24:32054849-32054512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):16, 62

               
               
               Conread position:33-384
               
               
               Cow position:chr24:1269978-1269650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 24

               
               
               Conread position:33-384
               
               
               Cow position:chr24:43371440-43371099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):232, 18

               
               
               Conread position:34-272
               
               
               Cow position:chr24:18750911-18750667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):110, 143

               
               
               Conread position:34-378
               
               
               Cow position:chr24:35332928-35332579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):128, 31

               
               
               Conread position:34-383
               
               
               Cow position:chr24:6131690-6132020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:255
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):230, 16

               
               
               Conread position:36-241
               
               
               Cow position:chr24:18021068-18021277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):24, 153

               
               
               Conread position:36-380
               
               
               Cow position:chr24:38006513-38006849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):101, 187

               
               
               Conread position:36-384
               
               
               Cow position:chr24:38815171-38814820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:37-347
               
               
               Cow position:chr24:3656168-3656477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):117, 16

               
               
               Conread position:37-369
               
               
               Cow position:chr24:17311032-17311344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):227, 16

               
               
               Conread position:38-240
               
               
               Cow position:chr24:15557143-15557346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:38-296
               
               
               Cow position:chr24:27202281-27202026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:38-335
               
               
               Cow position:chr24:38613083-38612788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 15

               
               
               Conread position:38-344
               
               
               Cow position:chr24:15246461-15246752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):225, 60

               
               
               Conread position:38-366
               
               
               Cow position:chr24:25263536-25263869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 27

               
               
               Conread position:38-384
               
               
               Cow position:chr24:18281437-18281783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):21, 114

               
               
               Conread position:39-331
               
               
               Cow position:chr24:39290241-39289948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):112, 17

               
               
               Conread position:39-382
               
               
               Cow position:chr24:16510168-16509824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:247
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):27, 45

               
               
               Conread position:39-384
               
               
               Cow position:chr24:352407-352753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):25, 173

               
               
               Conread position:39-384
               
               
               Cow position:chr24:16089425-16089088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):89, 53

               
               
               Conread position:40-301
               
               
               Cow position:chr24:1816491-1816231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):150, 13

               
               
               Conread position:40-343
               
               
               Cow position:chr24:30229669-30229364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):125, 98

               
               
               Conread position:40-384
               
               
               Cow position:chr24:15057578-15057253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):151, 13

               
               
               Conread position:40-384
               
               
               Cow position:chr24:28063144-28062804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 24

               
               
               Conread position:40-384
               
               
               Cow position:chr24:28722072-28721743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):222, 87

               
               
               Conread position:41-384
               
               
               Cow position:chr24:24755623-24755296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:250
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):223, 45

               
               
               Conread position:43-262
               
               
               Cow position:chr24:21715159-21715377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):104, 10

               
               
               Conread position:43-293
               
               
               Cow position:chr24:39238954-39238715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):9, 87

               
               
               Conread position:43-378
               
               
               Cow position:chr24:7914201-7913862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):116, 126

               
               
               Conread position:43-396
               
               
               Cow position:chr24:33621287-33621643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:256
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):134, 21

               
               
               Conread position:44-355
               
               
               Cow position:chr24:43832714-43832404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):23, 95

               
               
               Conread position:44-384
               
               
               Cow position:chr24:34762087-34761749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 82

               
               
               Conread position:45-368
               
               
               Cow position:chr24:29587189-29586863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):201, 19

               
               
               Conread position:45-384
               
               
               Cow position:chr24:24457050-24457394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):21, 49

               
               
               Conread position:47-249
               
               
               Cow position:chr24:3542489-3542286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:47-289
               
               
               Cow position:chr24:8677012-8676769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):90, 17

               
               
               Conread position:47-378
               
               
               Cow position:chr24:33098286-33098631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):219, 9

               
               
               Conread position:47-384
               
               
               Cow position:chr24:20249701-20250048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 114

               
               
               Conread position:47-384
               
               
               Cow position:chr24:27725821-27726163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 10

               
               
               Conread position:47-387
               
               
               Cow position:chr24:28234230-28233898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 78

               
               
               Conread position:48-251
               
               
               Cow position:chr24:12121085-12120881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):88, 16

               
               
               Conread position:48-283
               
               
               Cow position:chr24:21834777-21835007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):216, 9

               
               
               Conread position:48-289
               
               
               Cow position:chr24:37651907-37651671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):49, 5

               
               
               Conread position:48-293
               
               
               Cow position:chr24:19730968-19730723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):128, 16

               
               
               Conread position:48-317
               
               
               Cow position:chr24:13586805-13587069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):163, 16

               
               
               Conread position:48-332
               
               
               Cow position:chr24:37823711-37823432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 98

               
               
               Conread position:48-378
               
               
               Cow position:chr24:39143798-39143469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):219, 16

               
               
               Conread position:48-378
               
               
               Cow position:chr24:44987185-44987519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):98, 331

               
               
               Conread position:48-384
               
               
               Cow position:chr24:12200223-12200561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):103, 5

               
               
               Conread position:48-384
               
               
               Cow position:chr24:18474543-18474893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 16

               
               
               Conread position:49-251
               
               
               Cow position:chr24:37252343-37252142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):117, 95

               
               
               Conread position:49-268
               
               
               Cow position:chr24:7757956-7757740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):17, 80

               
               
               Conread position:49-373
               
               
               Cow position:chr24:40537147-40537469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:49-378
               
               
               Cow position:chr24:19465723-19466063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):57, 139

               
               
               Conread position:49-382
               
               
               Cow position:chr24:17860075-17860401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):8, 80

               
               
               Conread position:49-384
               
               
               Cow position:chr24:27219902-27220239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):100, 137

               
               
               Conread position:50-241
               
               
               Cow position:chr24:20017241-20017433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:50-245
               
               
               Cow position:chr24:11921724-11921920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:50-255
               
               
               Cow position:chr24:34301852-34302055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):84, 30

               
               
               Conread position:50-279
               
               
               Cow position:chr24:42688025-42687804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):214, 14

               
               
               Conread position:50-314
               
               
               Cow position:chr24:19624051-19623780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 197

               
               
               Conread position:50-325
               
               
               Cow position:chr24:43028143-43028419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):93, 190

               
               
               Conread position:50-331
               
               
               Cow position:chr24:27958282-27958571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):106, 118

               
               
               Conread position:50-344
               
               
               Cow position:chr24:13353212-13352930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):13, 79

               
               
               Conread position:50-371
               
               
               Cow position:chr24:34273004-34272677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):64, 241

               
               
               Conread position:50-376
               
               
               Cow position:chr24:10242600-10242921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):127, 42

               
               
               Conread position:50-377
               
               
               Cow position:chr24:27040235-27039910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):77, 113

               
               
               Conread position:50-378
               
               
               Cow position:chr24:11840368-11840044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):214, 7

               
               
               Conread position:50-383
               
               
               Cow position:chr24:3166004-3165674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 34

               
               
               Conread position:50-383
               
               
               Cow position:chr24:27607926-27608245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 90

               
               
               Conread position:50-384
               
               
               Cow position:chr24:11887339-11887013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 45

               
               
               Conread position:50-384
               
               
               Cow position:chr24:15861406-15861749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):83, 168

               
               
               Conread position:50-384
               
               
               Cow position:chr24:31159814-31159469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr24:32204598-32204942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):25, 248

               
               
               Conread position:50-384
               
               
               Cow position:chr24:41001450-41001112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):124, 14

               
               
               Conread position:51-230
               
               
               Cow position:chr24:7275883-7275709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:51-230
               
               
               Cow position:chr24:28255880-28256053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:51-240
               
               
               Cow position:chr24:6159458-6159643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 109

               
               
               Conread position:51-248
               
               
               Cow position:chr24:23046711-23046910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):93, 138

               
               
               Conread position:51-384
               
               
               Cow position:chr24:10499401-10499066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 6

               
               
               Conread position:51-384
               
               
               Cow position:chr24:16895241-16895584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 243

               
               
               Conread position:52-217
               
               
               Cow position:chr24:21656592-21656425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):101, 13

               
               
               Conread position:52-225
               
               
               Cow position:chr24:26588402-26588231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 92

               
               
               Conread position:52-332
               
               
               Cow position:chr24:39910848-39911133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):92, 127

               
               
               Conread position:52-347
               
               
               Cow position:chr24:27348993-27349290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):80, 22

               
               
               Conread position:52-384
               
               
               Cow position:chr24:2402193-2402522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 54

               
               
               Conread position:52-384
               
               
               Cow position:chr24:27906621-27906290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):95, 53

               
               
               Conread position:52-384
               
               
               Cow position:chr24:32609834-32609494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):8, 136

               
               
               Conread position:52-384
               
               
               Cow position:chr24:36403974-36404292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):214, 13

               
               
               Conread position:53-217
               
               
               Cow position:chr24:6488387-6488227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:53-249
               
               
               Cow position:chr24:11155481-11155682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):96, 134

               
               
               Conread position:53-255
               
               
               Cow position:chr24:6739992-6740187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 110

               
               
               Conread position:53-255
               
               
               Cow position:chr24:33238072-33238284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:53-255
               
               
               Cow position:chr24:39903826-39904023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 74

               
               
               Conread position:53-257
               
               
               Cow position:chr24:18730529-18730323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 123

               
               
               Conread position:53-258
               
               
               Cow position:chr24:6887187-6886989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:53-268
               
               
               Cow position:chr24:32890863-32891076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:53-297
               
               
               Cow position:chr24:5360893-5360657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):211, 89

               
               
               Conread position:53-326
               
               
               Cow position:chr24:23574978-23575247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:53-329
               
               
               Cow position:chr24:20364234-20364503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 60

               
               
               Conread position:53-335
               
               
               Cow position:chr24:27285006-27284721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):82, 173

               
               
               Conread position:53-378
               
               
               Cow position:chr24:42103543-42103234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):77, 41

               
               
               Conread position:53-382
               
               
               Cow position:chr24:19187114-19186815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):326, 87

               
               
               Conread position:53-382
               
               
               Cow position:chr24:37395026-37395354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:53-383
               
               
               Cow position:chr24:5632846-5633180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):94, 120

               
               
               Conread position:53-384
               
               
               Cow position:chr24:27844352-27844670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 11

               
               
               Conread position:53-384
               
               
               Cow position:chr24:30483763-30484099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):152, 11

               
               
               Conread position:53-384
               
               
               Cow position:chr24:42825333-42825642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):212, 52

               
               
               Conread position:54-264
               
               
               Cow position:chr24:3412862-3412655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:54-332
               
               
               Cow position:chr24:20807705-20807439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):43, 69

               
               
               Conread position:54-384
               
               
               Cow position:chr24:28553391-28553695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):210, 38

               
               
               Conread position:55-384
               
               
               Cow position:chr24:17104391-17104720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 37

               
               
               Conread position:56-207
               
               
               Cow position:chr24:41925995-41925851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:56-377
               
               
               Cow position:chr24:390279-389960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):109, 72

               
               
               Conread position:56-390
               
               
               Cow position:chr24:39849713-39850037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):208, 89

               
               
               Conread position:57-257
               
               
               Cow position:chr24:22129466-22129662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):172, 29

               
               
               Conread position:57-282
               
               
               Cow position:chr24:28510969-28510750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):207, 81

               
               
               Conread position:57-325
               
               
               Cow position:chr24:175330-175586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):210, 51

               
               
               Conread position:57-332
               
               
               Cow position:chr24:28600260-28600535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):95, 35

               
               
               Conread position:57-332
               
               
               Cow position:chr24:43537137-43536856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):70, 37

               
               
               Conread position:57-368
               
               
               Cow position:chr24:27713232-27713536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):207, 63

               
               
               Conread position:57-378
               
               
               Cow position:chr24:29595622-29595952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):79, 236

               
               
               Conread position:57-384
               
               
               Cow position:chr24:2675514-2675174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):70, 229

               
               
               Conread position:57-384
               
               
               Cow position:chr24:3494059-3493744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):87, 61

               
               
               Conread position:57-384
               
               
               Cow position:chr24:11119472-11119137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):41, 235

               
               
               Conread position:57-384
               
               
               Cow position:chr24:30313851-30314180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 84

               
               
               Conread position:57-384
               
               
               Cow position:chr24:34396012-34396322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:57-384
               
               
               Cow position:chr24:34742927-34742607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:58-219
               
               
               Cow position:chr24:27719353-27719510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:58-257
               
               
               Cow position:chr24:36775594-36775798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):68, 58

               
               
               Conread position:58-273
               
               
               Cow position:chr24:23666948-23667155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:58-321
               
               
               Cow position:chr24:2992703-2992963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):80, 117

               
               
               Conread position:58-330
               
               
               Cow position:chr24:15289004-15288726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):128, 93

               
               
               Conread position:58-369
               
               
               Cow position:chr24:29605856-29606176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):86, 32

               
               
               Conread position:58-384
               
               
               Cow position:chr24:25194443-25194121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):78, 128

               
               
               Conread position:58-384
               
               
               Cow position:chr24:28496406-28496731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 18

               
               
               Conread position:59-217
               
               
               Cow position:chr24:38427934-38428094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:59-220
               
               
               Cow position:chr24:27412939-27413095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:59-231
               
               
               Cow position:chr24:25947683-25947857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):68, 119

               
               
               Conread position:59-235
               
               
               Cow position:chr24:32429586-32429764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 128

               
               
               Conread position:59-252
               
               
               Cow position:chr24:39304735-39304937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):60, 135

               
               
               Conread position:59-265
               
               
               Cow position:chr24:11836225-11836433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 128

               
               
               Conread position:59-274
               
               
               Cow position:chr24:42984571-42984352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):87, 112

               
               
               Conread position:59-297
               
               
               Cow position:chr24:18137124-18137369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 127

               
               
               Conread position:59-331
               
               
               Cow position:chr24:18755936-18755661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):61, 128

               
               
               Conread position:59-352
               
               
               Cow position:chr24:37974807-37975097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:59-364
               
               
               Cow position:chr24:17943001-17943302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 115

               
               
               Conread position:59-366
               
               
               Cow position:chr24:2359009-2359306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):105, 83

               
               
               Conread position:59-368
               
               
               Cow position:chr24:41980484-41980794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):211, 167

               
               
               Conread position:59-379
               
               
               Cow position:chr24:19801015-19800704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):200, 68

               
               
               Conread position:59-384
               
               
               Cow position:chr24:35675707-35675397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 80

               
               
               Conread position:60-231
               
               
               Cow position:chr24:21524240-21524069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):87, 58

               
               
               Conread position:60-232
               
               
               Cow position:chr24:24091159-24091336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:60-274
               
               
               Cow position:chr24:22133341-22133132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):20, 36

               
               
               Conread position:60-274
               
               
               Cow position:chr24:29984815-29985023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):204, 68

               
               
               Conread position:60-282
               
               
               Cow position:chr24:26001562-26001340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):97, 34

               
               
               Conread position:60-362
               
               
               Cow position:chr24:39523275-39523573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 92

               
               
               Conread position:60-379
               
               
               Cow position:chr24:20801170-20801488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):111, 125

               
               
               Conread position:60-382
               
               
               Cow position:chr24:212145-211839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):204, 68

               
               
               Conread position:60-383
               
               
               Cow position:chr24:23694736-23695040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):137, 34

               
               
               Conread position:60-383
               
               
               Cow position:chr24:30236047-30235726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 94

               
               
               Conread position:60-383
               
               
               Cow position:chr24:32739088-32739419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):84, 127

               
               
               Conread position:60-384
               
               
               Cow position:chr24:16995053-16994739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):104, 82

               
               
               Conread position:60-384
               
               
               Cow position:chr24:17284808-17285142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:60-384
               
               
               Cow position:chr24:24490851-24491158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):204, 13

               
               
               Conread position:60-384
               
               
               Cow position:chr24:26928766-26929093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):84, 123

               
               
               Conread position:61-235
               
               
               Cow position:chr24:26569633-26569458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):120, 98

               
               
               Conread position:61-249
               
               
               Cow position:chr24:18874646-18874834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):85, 107

               
               
               Conread position:62-244
               
               
               Cow position:chr24:10219213-10219393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:62-261
               
               
               Cow position:chr24:13610474-13610286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):107, 60

               
               
               Conread position:62-278
               
               
               Cow position:chr24:33244559-33244353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:62-297
               
               
               Cow position:chr24:42175698-42175469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):168, 83

               
               
               Conread position:62-384
               
               
               Cow position:chr24:25884975-25885309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 161

               
               
               Conread position:62-384
               
               
               Cow position:chr24:27630572-27630255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):69, 115

               
               
               Conread position:62-384
               
               
               Cow position:chr24:33944579-33944256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):77, 167

               
               
               Conread position:63-332
               
               
               Cow position:chr24:28043164-28042876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):53, 7

               
               
               Conread position:64-384
               
               
               Cow position:chr24:18374935-18374630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):50, 91

               
               
               Conread position:64-384
               
               
               Cow position:chr24:37038062-37037751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 81

               
               
               Conread position:65-219
               
               
               Cow position:chr24:24540322-24540474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 78

               
               
               Conread position:68-274
               
               
               Cow position:chr24:25122504-25122306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:69-268
               
               
               Cow position:chr24:32230338-32230541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 107

               
               
               Conread position:69-383
               
               
               Cow position:chr24:36008652-36008338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):85, 36

               
               
               Conread position:69-384
               
               
               Cow position:chr24:36173613-36173929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):80, 109

               
               
               Conread position:71-297
               
               
               Cow position:chr24:41916421-41916191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):165, 73

               
               
               Conread position:71-329
               
               
               Cow position:chr24:31816739-31816483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 23

               
               
               Conread position:72-231
               
               
               Cow position:chr24:43358858-43358703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:72-282
               
               
               Cow position:chr24:28344543-28344338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):121, 50

               
               
               Conread position:72-363
               
               
               Cow position:chr24:29561416-29561701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 23

               
               
               Conread position:72-378
               
               
               Cow position:chr24:40130299-40129985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:72-383
               
               
               Cow position:chr24:23556174-23556474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):92, 55

               
               
               Conread position:72-383
               
               
               Cow position:chr24:38841270-38841551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):302, 51

               
               
               Conread position:72-384
               
               
               Cow position:chr24:18741402-18741719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):54, 219

               
               
               Conread position:72-384
               
               
               Cow position:chr24:41423759-41423461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):157, 55

               
               
               Conread position:73-247
               
               
               Cow position:chr24:6008008-6008181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:73-247
               
               
               Cow position:chr24:17073103-17073268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:73-255
               
               
               Cow position:chr24:162168-161984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):71, 116

               
               
               Conread position:73-321
               
               
               Cow position:chr24:6912196-6912453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):68, 32

               
               
               Conread position:73-339
               
               
               Cow position:chr24:28342524-28342247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:73-368
               
               
               Cow position:chr24:35632143-35631855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):48, 102

               
               
               Conread position:73-384
               
               
               Cow position:chr24:22225353-22225033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 35

               
               
               Conread position:74-384
               
               
               Cow position:chr24:7476189-7476501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):73, 113

               
               
               Conread position:75-382
               
               
               Cow position:chr24:41756010-41755717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):189, 53

               
               
               Conread position:76-384
               
               
               Cow position:chr24:44040852-44041161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):125, 65

               
               
               Conread position:79-377
               
               
               Cow position:chr24:6102983-6102688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):185, 38

               
               
               Conread position:80-384
               
               
               Cow position:chr24:20943315-20943019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):184, 67

               
               
               Conread position:83-367
               
               
               Cow position:chr24:20594700-20594407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):66, 92

               
               
               Conread position:85-384
               
               
               Cow position:chr24:29782314-29782016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):51, 100

               
               
               Conread position:86-384
               
               
               Cow position:chr24:17294046-17294340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):58, 91

               
               
               Conread position:86-384
               
               
               Cow position:chr24:28990711-28990416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):58, 50

               
               
               Conread position:87-386
               
               
               Cow position:chr24:16645170-16645473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:95-383
               
               
               Cow position:chr24:20874820-20874533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 51

               
               
               Conread position:96-384
               
               
               Cow position:chr24:5754967-5754690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 24

               
               
               Conread position:96-384
               
               
               Cow position:chr24:31359457-31359178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 43

               
               
               Conread position:98-347
               
               
               Cow position:chr24:16895010-16895241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):166, 29

               
               
               Conread position:98-367
               
               
               Cow position:chr24:26554457-26554729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):56, 78

               
               
               Conread position:98-384
               
               
               Cow position:chr24:42344857-42345153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):56, 78

               
               
               Conread position:99-383
               
               
               Cow position:chr24:17832684-17832961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):165, 134

               
               
               Conread position:116-382
               
               
               Cow position:chr24:2095760-2096035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):15, 268

               
               
               Conread position:128-297
               
               
               Cow position:chr24:28689776-28689605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):108, 151

               
               
               Conread position:128-384
               
               
               Cow position:chr24:17955339-17955591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-384
               
               
               Cow position:chr24:18017337-18017079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:128-384
               
               
               Cow position:chr24:23186810-23187065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):27, 225

               
               
               Conread position:128-384
               
               
               Cow position:chr24:28326972-28327232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):16, 122

               
               
               Conread position:128-384
               
               
               Cow position:chr24:43200168-43200424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):136, 31

               
               
               Conread position:129-282
               
               
               Cow position:chr24:17375742-17375591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):135, 16

               
               
               Conread position:129-343
               
               
               Cow position:chr24:19769600-19769381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):23, 152

               
               
               Conread position:129-348
               
               
               Cow position:chr24:14457619-14457834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):171, 22

               
               
               Conread position:129-348
               
               
               Cow position:chr24:39791647-39791427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):135, 22

               
               
               Conread position:129-362
               
               
               Cow position:chr24:35150625-35150396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):135, 103

               
               
               Conread position:129-383
               
               
               Cow position:chr24:33153882-33153630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):138, 22

               
               
               Conread position:129-384
               
               
               Cow position:chr24:201531-201782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):135, 32

               
               
               Conread position:129-384
               
               
               Cow position:chr24:34008466-34008726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:131-281
               
               
               Cow position:chr24:42981657-42981805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):133, 88

               
               
               Conread position:131-343
               
               
               Cow position:chr24:29679208-29679416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:131-378
               
               
               Cow position:chr24:27290976-27290729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):133, 154

               
               
               Conread position:131-384
               
               
               Cow position:chr24:14171589-14171842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):140, 56

               
               
               Conread position:131-384
               
               
               Cow position:chr24:18331825-18331576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):61, 156

               
               
               Conread position:131-384
               
               
               Cow position:chr24:18970404-18970656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):109, 22

               
               
               Conread position:131-384
               
               
               Cow position:chr24:29673625-29673371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-384
               
               
               Cow position:chr24:33221829-33222090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:131-384
               
               
               Cow position:chr24:33465519-33465756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:132-384
               
               
               Cow position:chr24:15373509-15373262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):132, 165

               
               
               Conread position:134-343
               
               
               Cow position:chr24:8887014-8886803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 155

               
               
               Conread position:134-379
               
               
               Cow position:chr24:8006406-8006168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:134-384
               
               
               Cow position:chr24:32071063-32070818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):129, 92

               
               
               Conread position:135-384
               
               
               Cow position:chr24:28289153-28289396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):129, 26

               
               
               Conread position:136-384
               
               
               Cow position:chr24:43432888-43432644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):128, 32

               
               
               Conread position:142-384
               
               
               Cow position:chr24:43364451-43364211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):122, 9

               
               
               Conread position:146-320
               
               
               Cow position:chr24:16268039-16268212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):116, 98

               
               
               Conread position:146-379
               
               
               Cow position:chr24:24662041-24662272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):118, 141

               
               
               Conread position:146-383
               
               
               Cow position:chr24:33230764-33230528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:146-384
               
               
               Cow position:chr24:18975299-18975052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 41

               
               
               Conread position:147-382
               
               
               Cow position:chr24:28319120-28319346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):117, 171

               
               
               Conread position:147-383
               
               
               Cow position:chr24:29063570-29063795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):117, 76

               
               
               Conread position:147-383
               
               
               Cow position:chr24:30897449-30897685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:147-384
               
               
               Cow position:chr24:24250812-24250580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 86

               
               
               Conread position:148-368
               
               
               Cow position:chr24:27824550-27824321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):116, 198

               
               
               Conread position:148-410
               
               
               Cow position:chr24:32369827-32370092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):92, 138

               
               
               Conread position:151-332
               
               
               Cow position:chr24:28045843-28045655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:151-378
               
               
               Cow position:chr24:29171046-29170828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):113, 57

               
               
               Conread position:151-397
               
               
               Cow position:chr24:27748725-27748488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:152-384
               
               
               Cow position:chr24:43927249-43927470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):110, 69

               
               
               Conread position:153-339
               
               
               Cow position:chr24:30308475-30308660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):111, 25

               
               
               Conread position:153-383
               
               
               Cow position:chr24:19736252-19736476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):109, 8

               
               
               Conread position:153-383
               
               
               Cow position:chr24:33723762-33723992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):32, 97

               
               
               Conread position:153-384
               
               
               Cow position:chr24:39227077-39226854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):119, 68

               
               
               Conread position:155-384
               
               
               Cow position:chr24:31324365-31324133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):107, 32

               
               
               Conread position:155-384
               
               
               Cow position:chr24:43967423-43967649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):112, 40

               
               
               Conread position:156-378
               
               
               Cow position:chr24:3430813-3430591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):108, 81

               
               
               Conread position:171-378
               
               
               Cow position:chr24:15707380-15707582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):89, 52

               
               
               Conread position:180-378
               
               
               Cow position:chr24:40837828-40837635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:185-378
               
               
               Cow position:chr24:41986046-41985848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):79, 41

               
               
               Conread position:185-384
               
               
               Cow position:chr24:27340968-27341168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):29, 77

               
               
               Conread position:187-364
               
               
               Cow position:chr24:32194561-32194380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:187-384
               
               
               Cow position:chr24:6150072-6149877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):80, 101

               
               
               Conread position:191-384
               
               
               Cow position:chr24:29180931-29180740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 35

               
               
               Conread position:193-412
               
               
               Cow position:chr24:24061765-24061989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):71, 18

               
               
               Conread position:194-380
               
               
               Cow position:chr24:39841807-39841993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):77, 20

               
               
               Conread position:195-384
               
               
               Cow position:chr24:7001028-7001212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):70, 27

               
               
               Conread position:199-378
               
               
               Cow position:chr24:20024650-20024474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 81

               
               
               Conread position:202-384
               
               
               Cow position:chr24:6487950-6487775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 17

               
               
               Conread position:203-380
               
               
               Cow position:chr24:39833482-39833656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):64, 80

               
               
               Conread position:220-384
               
               
               Cow position:chr24:27052478-27052644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 79

               
               
               Conread position:233-384
               
               
               Cow position:chr24:35794732-35794884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):31, 104

               
               
               Conread position:243-384
               
               
               Cow position:chr24:4615527-4615667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 43

               
               
               Conread position:2-384
               
               
               Cow position:chr25:21289604-21289218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):71, 175

               
               
               Conread position:4-284
               
               
               Cow position:chr25:36873084-36873360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:4-335
               
               
               Cow position:chr25:8345744-8346079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):29, 178

               
               
               Conread position:5-368
               
               
               Cow position:chr25:18487923-18487561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:6-384
               
               
               Cow position:chr25:18201682-18202052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):143, 44

               
               
               Conread position:7-328
               
               
               Cow position:chr25:26160778-26160448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):42, 166

               
               
               Conread position:7-348
               
               
               Cow position:chr25:17725283-17724966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):139, 46

               
               
               Conread position:7-383
               
               
               Cow position:chr25:33686433-33686804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:255
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):138, 19

               
               
               Conread position:8-384
               
               
               Cow position:chr25:1838488-1838111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:266
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:9-330
               
               
               Cow position:chr25:33555860-33555536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 204

               
               
               Conread position:9-384
               
               
               Cow position:chr25:7750687-7750330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 40

               
               
               Conread position:10-365
               
               
               Cow position:chr25:36555452-36555796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):56, 26

               
               
               Conread position:15-384
               
               
               Cow position:chr25:7008164-7007789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:264
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):48, 28

               
               
               Conread position:17-285
               
               
               Cow position:chr25:13826669-13826408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):249, 40

               
               
               Conread position:22-243
               
               
               Cow position:chr25:3141733-3141518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):162, 14

               
               
               Conread position:23-203
               
               
               Cow position:chr25:7441239-7441064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:24-418
               
               
               Cow position:chr25:36020643-36020246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):104, 40

               
               
               Conread position:26-384
               
               
               Cow position:chr25:13272804-13272447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 129

               
               
               Conread position:27-254
               
               
               Cow position:chr25:24115088-24115312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):7, 27

               
               
               Conread position:27-384
               
               
               Cow position:chr25:26655120-26654783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):229, 23

               
               
               Conread position:27-413
               
               
               Cow position:chr25:7035789-7035399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):142, 37

               
               
               Conread position:28-250
               
               
               Cow position:chr25:5791487-5791709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):116, 21

               
               
               Conread position:28-347
               
               
               Cow position:chr25:26578373-26578700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):226, 25

               
               
               Conread position:28-384
               
               
               Cow position:chr25:11316131-11315784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):236, 133

               
               
               Conread position:29-274
               
               
               Cow position:chr25:5637163-5637402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):235, 20

               
               
               Conread position:29-361
               
               
               Cow position:chr25:33959022-33959356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):93, 134

               
               
               Conread position:29-384
               
               
               Cow position:chr25:6463802-6464160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):125, 24

               
               
               Conread position:31-207
               
               
               Cow position:chr25:26643038-26642858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:31-251
               
               
               Cow position:chr25:21443142-21443362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:31-273
               
               
               Cow position:chr25:26236284-26236527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 36

               
               
               Conread position:31-383
               
               
               Cow position:chr25:22179132-22178796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:253
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):233, 18

               
               
               Conread position:31-384
               
               
               Cow position:chr25:20349097-20348733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 22

               
               
               Conread position:32-292
               
               
               Cow position:chr25:28423372-28423107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):89, 32

               
               
               Conread position:33-240
               
               
               Cow position:chr25:4192233-4192022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 156

               
               
               Conread position:33-326
               
               
               Cow position:chr25:21184109-21183813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):142, 31

               
               
               Conread position:33-344
               
               
               Cow position:chr25:12807263-12806958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):114, 38

               
               
               Conread position:33-362
               
               
               Cow position:chr25:24207190-24207524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):123, 38

               
               
               Conread position:33-384
               
               
               Cow position:chr25:22347008-22346647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 33

               
               
               Conread position:34-288
               
               
               Cow position:chr25:9769646-9769385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):16, 157

               
               
               Conread position:34-384
               
               
               Cow position:chr25:6469988-6470344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):104, 18

               
               
               Conread position:34-389
               
               
               Cow position:chr25:6292793-6292436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):27, 150

               
               
               Conread position:35-241
               
               
               Cow position:chr25:5808170-5807962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):109, 152

               
               
               Conread position:35-289
               
               
               Cow position:chr25:12194998-12195259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):101, 153

               
               
               Conread position:35-366
               
               
               Cow position:chr25:17915006-17914675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):100, 142

               
               
               Conread position:36-412
               
               
               Cow position:chr25:20157073-20157452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):117, 28

               
               
               Conread position:37-212
               
               
               Cow position:chr25:17141318-17141148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:37-238
               
               
               Cow position:chr25:24147737-24147926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:37-251
               
               
               Cow position:chr25:33100796-33100580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 105

               
               
               Conread position:37-255
               
               
               Cow position:chr25:36370039-36369822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:37-255
               
               
               Cow position:chr25:36375730-36375513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:37-274
               
               
               Cow position:chr25:3744512-3744762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:37-340
               
               
               Cow position:chr25:41130449-41130146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 27

               
               
               Conread position:37-378
               
               
               Cow position:chr25:30817110-30816766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):112, 16

               
               
               Conread position:37-384
               
               
               Cow position:chr25:2415020-2414693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 117

               
               
               Conread position:37-384
               
               
               Cow position:chr25:5921164-5920812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):117, 16

               
               
               Conread position:38-273
               
               
               Cow position:chr25:31514403-31514166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):106, 152

               
               
               Conread position:38-348
               
               
               Cow position:chr25:9316242-9315930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):155, 15

               
               
               Conread position:39-256
               
               
               Cow position:chr25:18551117-18551332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:39-383
               
               
               Cow position:chr25:9843394-9843052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 12

               
               
               Conread position:39-384
               
               
               Cow position:chr25:11065922-11066274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):81, 14

               
               
               Conread position:40-280
               
               
               Cow position:chr25:18928993-18929215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):222, 12

               
               
               Conread position:40-326
               
               
               Cow position:chr25:5646292-5646581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):219, 104

               
               
               Conread position:40-383
               
               
               Cow position:chr25:18720911-18721239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):234, 30

               
               
               Conread position:40-397
               
               
               Cow position:chr25:9989888-9990229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 26

               
               
               Conread position:41-246
               
               
               Cow position:chr25:31926169-31926365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:41-272
               
               
               Cow position:chr25:14107052-14106817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 11

               
               
               Conread position:42-207
               
               
               Cow position:chr25:28939925-28940090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:43-289
               
               
               Cow position:chr25:9616054-9615805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:45-368
               
               
               Cow position:chr25:8157299-8157620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):99, 30

               
               
               Conread position:45-378
               
               
               Cow position:chr25:40904613-40904940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):25, 144

               
               
               Conread position:45-384
               
               
               Cow position:chr25:35612086-35612429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):15, 257

               
               
               Conread position:45-385
               
               
               Cow position:chr25:12293533-12293873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):137, 31

               
               
               Conread position:46-384
               
               
               Cow position:chr25:41150754-41151086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 11

               
               
               Conread position:47-295
               
               
               Cow position:chr25:35109067-35109306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):13, 76

               
               
               Conread position:47-368
               
               
               Cow position:chr25:8485274-8485602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):110, 17

               
               
               Conread position:47-384
               
               
               Cow position:chr25:7217029-7216705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:47-384
               
               
               Cow position:chr25:22315413-22315077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 6

               
               
               Conread position:47-384
               
               
               Cow position:chr25:30852974-30852631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):224, 10

               
               
               Conread position:48-217
               
               
               Cow position:chr25:21082197-21082366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):5, 17

               
               
               Conread position:48-343
               
               
               Cow position:chr25:7673515-7673205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):49, 17

               
               
               Conread position:48-368
               
               
               Cow position:chr25:1823881-1824205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):12, 246

               
               
               Conread position:48-378
               
               
               Cow position:chr25:17991385-17991700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 36

               
               
               Conread position:48-434
               
               
               Cow position:chr25:20664070-20664469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):140, 358

               
               
               Conread position:49-260
               
               
               Cow position:chr25:14944920-14945124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 35

               
               
               Conread position:49-273
               
               
               Cow position:chr25:2111245-2111033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:49-274
               
               
               Cow position:chr25:19584577-19584347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):109, 91

               
               
               Conread position:49-384
               
               
               Cow position:chr25:26136612-26136949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):107, 119

               
               
               Conread position:50-213
               
               
               Cow position:chr25:30709138-30709303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:50-215
               
               
               Cow position:chr25:13565127-13565280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:50-231
               
               
               Cow position:chr25:12223771-12223598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:50-238
               
               
               Cow position:chr25:20085784-20085597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:50-250
               
               
               Cow position:chr25:15349702-15349897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:50-255
               
               
               Cow position:chr25:11060342-11060135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:50-269
               
               
               Cow position:chr25:2362032-2361825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):214, 77

               
               
               Conread position:50-298
               
               
               Cow position:chr25:4157040-4157282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):205, 96

               
               
               Conread position:50-305
               
               
               Cow position:chr25:28597397-28597658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):62, 242

               
               
               Conread position:50-307
               
               
               Cow position:chr25:9025331-9025078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):11, 106

               
               
               Conread position:50-308
               
               
               Cow position:chr25:38958152-38957911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):19, 43

               
               
               Conread position:50-312
               
               
               Cow position:chr25:7726872-7726611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):94, 140

               
               
               Conread position:50-331
               
               
               Cow position:chr25:11957011-11956733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):94, 77

               
               
               Conread position:50-345
               
               
               Cow position:chr25:12305485-12305189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):86, 23

               
               
               Conread position:50-355
               
               
               Cow position:chr25:33773561-33773877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):11, 136

               
               
               Conread position:50-377
               
               
               Cow position:chr25:11432740-11433072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 75

               
               
               Conread position:50-378
               
               
               Cow position:chr25:21245386-21245722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):42, 248

               
               
               Conread position:50-383
               
               
               Cow position:chr25:21191683-21191366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 7

               
               
               Conread position:50-384
               
               
               Cow position:chr25:447954-448293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 44

               
               
               Conread position:50-384
               
               
               Cow position:chr25:3992989-3992668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):16, 172

               
               
               Conread position:50-384
               
               
               Cow position:chr25:23053770-23053433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):94, 131

               
               
               Conread position:50-384
               
               
               Cow position:chr25:24573266-24572943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:50-384
               
               
               Cow position:chr25:26089620-26089940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 41

               
               
               Conread position:50-384
               
               
               Cow position:chr25:26524168-26523839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):109, 7

               
               
               Conread position:51-221
               
               
               Cow position:chr25:32750282-32750112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):105, 35

               
               
               Conread position:51-252
               
               
               Cow position:chr25:18491242-18491044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):114, 6

               
               
               Conread position:51-270
               
               
               Cow position:chr25:1802819-1802596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):16, 102

               
               
               Conread position:52-344
               
               
               Cow position:chr25:10156759-10156488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:52-382
               
               
               Cow position:chr25:36082074-36081753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 77

               
               
               Conread position:53-254
               
               
               Cow position:chr25:14102872-14102670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):116, 11

               
               
               Conread position:53-255
               
               
               Cow position:chr25:2662598-2662402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:53-269
               
               
               Cow position:chr25:20203112-20202901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):211, 67

               
               
               Conread position:53-270
               
               
               Cow position:chr25:36872852-36873069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):211, 11

               
               
               Conread position:53-274
               
               
               Cow position:chr25:17919182-17918957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 55

               
               
               Conread position:53-309
               
               
               Cow position:chr25:40682941-40682687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):211, 103

               
               
               Conread position:53-321
               
               
               Cow position:chr25:19478894-19478610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:53-324
               
               
               Cow position:chr25:1840525-1840255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):211, 88

               
               
               Conread position:53-327
               
               
               Cow position:chr25:36073795-36074069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):93, 153

               
               
               Conread position:53-364
               
               
               Cow position:chr25:26224832-26225131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):112, 69

               
               
               Conread position:53-366
               
               
               Cow position:chr25:17474309-17474619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 23

               
               
               Conread position:53-368
               
               
               Cow position:chr25:12260683-12261000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:53-371
               
               
               Cow position:chr25:22317887-22317568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):101, 20

               
               
               Conread position:53-373
               
               
               Cow position:chr25:7817189-7816869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):116, 30

               
               
               Conread position:53-383
               
               
               Cow position:chr25:8120985-8120656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 74

               
               
               Conread position:53-384
               
               
               Cow position:chr25:4489107-4488794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):209, 61

               
               
               Conread position:53-384
               
               
               Cow position:chr25:7010766-7011099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):131, 104

               
               
               Conread position:53-384
               
               
               Cow position:chr25:9002873-9002549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):73, 63

               
               
               Conread position:53-384
               
               
               Cow position:chr25:12755286-12755618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):14, 108

               
               
               Conread position:53-384
               
               
               Cow position:chr25:20008339-20008009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 237

               
               
               Conread position:53-384
               
               
               Cow position:chr25:21893539-21893210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 70

               
               
               Conread position:53-384
               
               
               Cow position:chr25:24669248-24669562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:53-384
               
               
               Cow position:chr25:26701224-26700911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):211, 78

               
               
               Conread position:53-385
               
               
               Cow position:chr25:33457930-33457603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 31

               
               
               Conread position:54-303
               
               
               Cow position:chr25:18810535-18810297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):7, 71

               
               
               Conread position:54-303
               
               
               Cow position:chr25:22298835-22298590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):212, 91

               
               
               Conread position:54-383
               
               
               Cow position:chr25:27869014-27868677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 40

               
               
               Conread position:55-235
               
               
               Cow position:chr25:18934434-18934612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:55-382
               
               
               Cow position:chr25:20069915-20069600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):116, 48

               
               
               Conread position:56-202
               
               
               Cow position:chr25:13470510-13470658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:56-248
               
               
               Cow position:chr25:22734207-22734018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:56-381
               
               
               Cow position:chr25:26338661-26338327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:56-383
               
               
               Cow position:chr25:12509820-12510134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 71

               
               
               Conread position:57-208
               
               
               Cow position:chr25:18131171-18131328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:57-247
               
               
               Cow position:chr25:7684699-7684887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:57-249
               
               
               Cow position:chr25:22565766-22565947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:57-265
               
               
               Cow position:chr25:11841499-11841290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):53, 114

               
               
               Conread position:57-301
               
               
               Cow position:chr25:22348258-22348508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:57-344
               
               
               Cow position:chr25:13621162-13621445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):209, 84

               
               
               Conread position:57-355
               
               
               Cow position:chr25:13768158-13767871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):208, 34

               
               
               Conread position:57-376
               
               
               Cow position:chr25:14152388-14152070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):87, 121

               
               
               Conread position:57-379
               
               
               Cow position:chr25:22731025-22730714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):173, 82

               
               
               Conread position:57-379
               
               
               Cow position:chr25:33557466-33557153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):248, 88

               
               
               Conread position:57-383
               
               
               Cow position:chr25:33550712-33550384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 71

               
               
               Conread position:57-384
               
               
               Cow position:chr25:4245865-4245564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):207, 88

               
               
               Conread position:57-384
               
               
               Cow position:chr25:16921593-16921916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):90, 104

               
               
               Conread position:57-384
               
               
               Cow position:chr25:18294111-18294443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):97, 119

               
               
               Conread position:57-384
               
               
               Cow position:chr25:20523038-20523356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):244, 37

               
               
               Conread position:57-384
               
               
               Cow position:chr25:21668448-21668120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 90

               
               
               Conread position:57-384
               
               
               Cow position:chr25:26679427-26679102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 240

               
               
               Conread position:57-384
               
               
               Cow position:chr25:32453231-32453520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:58-220
               
               
               Cow position:chr25:15999351-15999514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):72, 105

               
               
               Conread position:58-225
               
               
               Cow position:chr25:14949614-14949777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):95, 16

               
               
               Conread position:58-254
               
               
               Cow position:chr25:35902945-35902751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:58-265
               
               
               Cow position:chr25:14419893-14419694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):151, 33

               
               
               Conread position:58-270
               
               
               Cow position:chr25:9573936-9574143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):206, 98

               
               
               Conread position:58-343
               
               
               Cow position:chr25:37331846-37332130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):206, 36

               
               
               Conread position:58-355
               
               
               Cow position:chr25:5846606-5846905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):69, 130

               
               
               Conread position:58-384
               
               
               Cow position:chr25:14791953-14791628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):208, 93

               
               
               Conread position:58-384
               
               
               Cow position:chr25:21192742-21193066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):225, 88

               
               
               Conread position:58-384
               
               
               Cow position:chr25:30278998-30279330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):82, 33

               
               
               Conread position:58-384
               
               
               Cow position:chr25:36746249-36746568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 130

               
               
               Conread position:58-391
               
               
               Cow position:chr25:26134245-26133909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:59-244
               
               
               Cow position:chr25:22373288-22373476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):50, 131

               
               
               Conread position:59-249
               
               
               Cow position:chr25:15423423-15423616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):90, 129

               
               
               Conread position:59-260
               
               
               Cow position:chr25:13542785-13542990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):78, 119

               
               
               Conread position:59-275
               
               
               Cow position:chr25:23519839-23520046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):200, 36

               
               
               Conread position:59-305
               
               
               Cow position:chr25:18760513-18760754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):200, 68

               
               
               Conread position:59-308
               
               
               Cow position:chr25:7551171-7551410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):205, 81

               
               
               Conread position:59-335
               
               
               Cow position:chr25:35762786-35762513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):141, 163

               
               
               Conread position:59-366
               
               
               Cow position:chr25:11585727-11585409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):85, 237

               
               
               Conread position:59-368
               
               
               Cow position:chr25:38135951-38135637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:59-384
               
               
               Cow position:chr25:6996983-6996656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 99

               
               
               Conread position:59-384
               
               
               Cow position:chr25:7306488-7306176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):114, 68

               
               
               Conread position:59-384
               
               
               Cow position:chr25:12609541-12609219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:243
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):83, 43

               
               
               Conread position:59-388
               
               
               Cow position:chr25:1763282-1762966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):105, 73

               
               
               Conread position:60-237
               
               
               Cow position:chr25:26269517-26269696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):94, 118

               
               
               Conread position:60-238
               
               
               Cow position:chr25:20487238-20487418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 134

               
               
               Conread position:60-299
               
               
               Cow position:chr25:13823522-13823760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):206, 118

               
               
               Conread position:60-332
               
               
               Cow position:chr25:14720929-14720672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):204, 81

               
               
               Conread position:60-341
               
               
               Cow position:chr25:432851-433132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):87, 31

               
               
               Conread position:60-342
               
               
               Cow position:chr25:35052421-35052705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):33, 192

               
               
               Conread position:60-373
               
               
               Cow position:chr25:27532476-27532786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):97, 37

               
               
               Conread position:60-382
               
               
               Cow position:chr25:37448624-37448312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):243, 80

               
               
               Conread position:60-383
               
               
               Cow position:chr25:34978660-34978992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):65, 45

               
               
               Conread position:60-384
               
               
               Cow position:chr25:4521644-4521960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 81

               
               
               Conread position:60-384
               
               
               Cow position:chr25:13380401-13380738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:60-384
               
               
               Cow position:chr25:14833471-14833784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):153, 81

               
               
               Conread position:60-384
               
               
               Cow position:chr25:19130051-19129727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 107

               
               
               Conread position:60-384
               
               
               Cow position:chr25:19679549-19679220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 87

               
               
               Conread position:60-384
               
               
               Cow position:chr25:32277419-32277725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:60-385
               
               
               Cow position:chr25:20785390-20785712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:60-391
               
               
               Cow position:chr25:17119941-17119608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):77, 117

               
               
               Conread position:61-262
               
               
               Cow position:chr25:31657084-31657281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:157
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:61-265
               
               
               Cow position:chr25:23998743-23998931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:61-274
               
               
               Cow position:chr25:14225563-14225345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):85, 128

               
               
               Conread position:61-348
               
               
               Cow position:chr25:13567180-13566872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):63, 34

               
               
               Conread position:61-379
               
               
               Cow position:chr25:27801475-27801166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 86

               
               
               Conread position:61-382
               
               
               Cow position:chr25:22296817-22297142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 171

               
               
               Conread position:61-384
               
               
               Cow position:chr25:7641259-7641576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 68

               
               
               Conread position:61-384
               
               
               Cow position:chr25:22756808-22756483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):93, 117

               
               
               Conread position:61-384
               
               
               Cow position:chr25:35348102-35347782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 65

               
               
               Conread position:62-235
               
               
               Cow position:chr25:14210171-14210006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:62-282
               
               
               Cow position:chr25:28667855-28668075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):174, 29

               
               
               Conread position:62-319
               
               
               Cow position:chr25:15273859-15273612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):200, 60

               
               
               Conread position:62-384
               
               
               Cow position:chr25:16318955-16319256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):202, 48

               
               
               Conread position:62-384
               
               
               Cow position:chr25:17658807-17658487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):103, 107

               
               
               Conread position:62-384
               
               
               Cow position:chr25:24651262-24651577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):102, 62

               
               
               Conread position:62-385
               
               
               Cow position:chr25:17704935-17704626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):8, 81

               
               
               Conread position:62-425
               
               
               Cow position:chr25:6928321-6928673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):37, 61

               
               
               Conread position:63-243
               
               
               Cow position:chr25:14849458-14849637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 8

               
               
               Conread position:63-288
               
               
               Cow position:chr25:21317224-21317459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):93, 115

               
               
               Conread position:64-288
               
               
               Cow position:chr25:18288577-18288800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):200, 83

               
               
               Conread position:64-332
               
               
               Cow position:chr25:11276740-11276478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:64-383
               
               
               Cow position:chr25:11051715-11051405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 27

               
               
               Conread position:64-384
               
               
               Cow position:chr25:9269533-9269230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):198, 82

               
               
               Conread position:64-384
               
               
               Cow position:chr25:14513299-14512985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):183, 77

               
               
               Conread position:65-232
               
               
               Cow position:chr25:10856524-10856688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:65-384
               
               
               Cow position:chr25:6682858-6683188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 288

               
               
               Conread position:68-244
               
               
               Cow position:chr25:11857797-11857973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):126, 84

               
               
               Conread position:68-247
               
               
               Cow position:chr25:7005704-7005523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):88, 119

               
               
               Conread position:68-282
               
               
               Cow position:chr25:16372742-16372526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:68-283
               
               
               Cow position:chr25:13223086-13222874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 7

               
               
               Conread position:68-378
               
               
               Cow position:chr25:19363871-19364181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 79

               
               
               Conread position:68-382
               
               
               Cow position:chr25:10504146-10504461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):62, 118

               
               
               Conread position:68-397
               
               
               Cow position:chr25:7380649-7380977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):73, 25

               
               
               Conread position:69-247
               
               
               Cow position:chr25:26061536-26061716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):80, 118

               
               
               Conread position:69-282
               
               
               Cow position:chr25:35339002-35339215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):140, 76

               
               
               Conread position:71-252
               
               
               Cow position:chr25:23323683-23323496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:71-353
               
               
               Cow position:chr25:16100772-16100490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):67, 121

               
               
               Conread position:71-384
               
               
               Cow position:chr25:20402523-20402842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):80, 23

               
               
               Conread position:72-262
               
               
               Cow position:chr25:11760275-11760454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:72-283
               
               
               Cow position:chr25:26072378-26072583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):192, 73

               
               
               Conread position:72-328
               
               
               Cow position:chr25:26306018-26306276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:191
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):113, 106

               
               
               Conread position:72-364
               
               
               Cow position:chr25:13443222-13443519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:72-382
               
               
               Cow position:chr25:36835247-36835548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):93, 55

               
               
               Conread position:72-384
               
               
               Cow position:chr25:17566776-17566459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):75, 38

               
               
               Conread position:72-384
               
               
               Cow position:chr25:20023209-20023515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):192, 45

               
               
               Conread position:73-363
               
               
               Cow position:chr25:23828946-23829233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):62, 73

               
               
               Conread position:73-366
               
               
               Cow position:chr25:25716829-25716544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):191, 72

               
               
               Conread position:74-217
               
               
               Cow position:chr25:22571142-22570999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-347
               
               
               Cow position:chr25:23244821-23245091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 71

               
               
               Conread position:74-378
               
               
               Cow position:chr25:36872546-36872242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 205

               
               
               Conread position:75-378
               
               
               Cow position:chr25:23779151-23779441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):173, 70

               
               
               Conread position:76-261
               
               
               Cow position:chr25:8347834-8347649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:76-384
               
               
               Cow position:chr25:2624975-2624683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:76-384
               
               
               Cow position:chr25:17190573-17190866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):185, 51

               
               
               Conread position:79-342
               
               
               Cow position:chr25:7806146-7805880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):75, 97

               
               
               Conread position:79-388
               
               
               Cow position:chr25:17342639-17342323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):61, 97

               
               
               Conread position:80-384
               
               
               Cow position:chr25:22369563-22369267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):67, 51

               
               
               Conread position:81-230
               
               
               Cow position:chr25:6782036-6781890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:82-292
               
               
               Cow position:chr25:37637486-37637703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:83-384
               
               
               Cow position:chr25:18075840-18075546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 75

               
               
               Conread position:87-384
               
               
               Cow position:chr25:788427-788139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):177, 71

               
               
               Conread position:89-384
               
               
               Cow position:chr25:16065050-16064763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):170, 16

               
               
               Conread position:90-274
               
               
               Cow position:chr25:9107363-9107541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):174, 38

               
               
               Conread position:90-343
               
               
               Cow position:chr25:15715039-15714788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):174, 54

               
               
               Conread position:90-345
               
               
               Cow position:chr25:7799721-7799466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):37, 117

               
               
               Conread position:90-378
               
               
               Cow position:chr25:15634299-15634593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):61, 86

               
               
               Conread position:90-382
               
               
               Cow position:chr25:11661660-11661940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):77, 37

               
               
               Conread position:95-255
               
               
               Cow position:chr25:15573551-15573391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:96-352
               
               
               Cow position:chr25:8102834-8102574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):8, 81

               
               
               Conread position:105-368
               
               
               Cow position:chr25:25861192-25861467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 88

               
               
               Conread position:117-384
               
               
               Cow position:chr25:5474091-5474352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):142, 29

               
               
               Conread position:127-381
               
               
               Cow position:chr25:38982224-38981980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):139, 96

               
               
               Conread position:127-384
               
               
               Cow position:chr25:3145976-3145718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):22, 51

               
               
               Conread position:127-384
               
               
               Cow position:chr25:26238996-26238745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 166

               
               
               Conread position:128-332
               
               
               Cow position:chr25:23505180-23504973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):136, 31

               
               
               Conread position:128-345
               
               
               Cow position:chr25:26052031-26051814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):102, 23

               
               
               Conread position:128-355
               
               
               Cow position:chr25:34241973-34242194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 61

               
               
               Conread position:128-368
               
               
               Cow position:chr25:61778-61551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-384
               
               
               Cow position:chr25:18906013-18905759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:129-326
               
               
               Cow position:chr25:7012552-7012360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):53, 18

               
               
               Conread position:129-344
               
               
               Cow position:chr25:23745387-23745171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):98, 23

               
               
               Conread position:129-352
               
               
               Cow position:chr25:36120625-36120408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:129-384
               
               
               Cow position:chr25:7581297-7581550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 156

               
               
               Conread position:129-384
               
               
               Cow position:chr25:30619190-30618940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:130-332
               
               
               Cow position:chr25:12116871-12117076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:130-378
               
               
               Cow position:chr25:10217921-10218167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):36, 57

               
               
               Conread position:131-283
               
               
               Cow position:chr25:15463712-15463561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):133, 24

               
               
               Conread position:131-283
               
               
               Cow position:chr25:30624956-30625110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:131-339
               
               
               Cow position:chr25:40931398-40931194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):136, 25

               
               
               Conread position:131-377
               
               
               Cow position:chr25:28187818-28188065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:131-378
               
               
               Cow position:chr25:13569051-13569290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):133, 30

               
               
               Conread position:131-382
               
               
               Cow position:chr25:22531408-22531161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):133, 111

               
               
               Conread position:131-383
               
               
               Cow position:chr25:17144563-17144299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 92

               
               
               Conread position:131-383
               
               
               Cow position:chr25:34170073-34169829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):135, 91

               
               
               Conread position:131-384
               
               
               Cow position:chr25:14196986-14196734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 21

               
               
               Conread position:131-384
               
               
               Cow position:chr25:23917967-23917717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):131, 20

               
               
               Conread position:132-337
               
               
               Cow position:chr25:5920205-5920005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):132, 15

               
               
               Conread position:132-382
               
               
               Cow position:chr25:15254222-15254455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):132, 143

               
               
               Conread position:132-384
               
               
               Cow position:chr25:21894758-21895012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:134-366
               
               
               Cow position:chr25:12252687-12252920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):130, 17

               
               
               Conread position:135-271
               
               
               Cow position:chr25:30064789-30064927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:136-384
               
               
               Cow position:chr25:36762227-36761980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):128, 141

               
               
               Conread position:137-348
               
               
               Cow position:chr25:22341647-22341437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 68

               
               
               Conread position:137-384
               
               
               Cow position:chr25:8961891-8961648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):126, 95

               
               
               Conread position:137-384
               
               
               Cow position:chr25:27531152-27531398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):101, 22

               
               
               Conread position:138-383
               
               
               Cow position:chr25:14157745-14157497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):126, 139

               
               
               Conread position:141-333
               
               
               Cow position:chr25:6227154-6226961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):24, 138

               
               
               Conread position:141-382
               
               
               Cow position:chr25:20133200-20133436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):126, 21

               
               
               Conread position:141-384
               
               
               Cow position:chr25:4681343-4681111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:142-384
               
               
               Cow position:chr25:18564602-18564363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 46

               
               
               Conread position:146-262
               
               
               Cow position:chr25:34967397-34967513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:146-321
               
               
               Cow position:chr25:6133979-6134155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):119, 68

               
               
               Conread position:146-334
               
               
               Cow position:chr25:7379035-7379226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):118, 139

               
               
               Conread position:146-352
               
               
               Cow position:chr25:4948074-4947869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):120, 162

               
               
               Conread position:146-378
               
               
               Cow position:chr25:12840606-12840842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):25, 37

               
               
               Conread position:147-383
               
               
               Cow position:chr25:20076608-20076368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):117, 210

               
               
               Conread position:147-384
               
               
               Cow position:chr25:22750896-22751135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:148-384
               
               
               Cow position:chr25:12319243-12319473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):116, 26

               
               
               Conread position:151-385
               
               
               Cow position:chr25:6688052-6687822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):113, 86

               
               
               Conread position:152-383
               
               
               Cow position:chr25:2136456-2136229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):153, 102

               
               
               Conread position:152-384
               
               
               Cow position:chr25:11436701-11436932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):112, 201

               
               
               Conread position:152-384
               
               
               Cow position:chr25:12778435-12778654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):112, 69

               
               
               Conread position:153-384
               
               
               Cow position:chr25:6961048-6961280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:153-384
               
               
               Cow position:chr25:17975273-17975493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):111, 122

               
               
               Conread position:153-384
               
               
               Cow position:chr25:25051272-25051507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):33, 137

               
               
               Conread position:155-321
               
               
               Cow position:chr25:36019566-36019731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):107, 60

               
               
               Conread position:155-345
               
               
               Cow position:chr25:23817737-23817935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:155-384
               
               
               Cow position:chr25:4547615-4547842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):110, 133

               
               
               Conread position:156-366
               
               
               Cow position:chr25:24066564-24066765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:156-385
               
               
               Cow position:chr25:36036677-36036907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):110, 169

               
               
               Conread position:161-332
               
               
               Cow position:chr25:14809370-14809206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):103, 123

               
               
               Conread position:161-378
               
               
               Cow position:chr25:16714173-16714387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):142, 29

               
               
               Conread position:161-394
               
               
               Cow position:chr25:40321191-40321433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):103, 61

               
               
               Conread position:165-367
               
               
               Cow position:chr25:5407835-5407631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):98, 188

               
               
               Conread position:168-283
               
               
               Cow position:chr25:14211719-14211603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:168-384
               
               
               Cow position:chr25:15377416-15377202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):96, 54

               
               
               Conread position:174-375
               
               
               Cow position:chr25:14118175-14117976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):92, 32

               
               
               Conread position:179-378
               
               
               Cow position:chr25:19317344-19317141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):85, 44

               
               
               Conread position:190-384
               
               
               Cow position:chr25:24052034-24051837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):74, 136

               
               
               Conread position:191-368
               
               
               Cow position:chr25:38425428-38425252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:192-381
               
               
               Cow position:chr25:12081256-12081443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):72, 51

               
               
               Conread position:193-384
               
               
               Cow position:chr25:32191725-32191545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:196-384
               
               
               Cow position:chr25:5836895-5837088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):61, 162

               
               
               Conread position:198-379
               
               
               Cow position:chr25:26642647-26642462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:199-385
               
               
               Cow position:chr25:7449859-7449681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):65, 85

               
               
               Conread position:240-389
               
               
               Cow position:chr25:36033456-36033307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:1-303
               
               
               Cow position:chr26:30127727-30128027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):126, 45

               
               
               Conread position:1-341
               
               
               Cow position:chr26:830091-829740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):19, 336

               
               
               Conread position:2-258
               
               
               Cow position:chr26:15132921-15132656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):40, 172

               
               
               Conread position:2-321
               
               
               Cow position:chr26:5836541-5836864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 287

               
               
               Conread position:3-297
               
               
               Cow position:chr26:29663885-29664178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 22

               
               
               Conread position:5-235
               
               
               Cow position:chr26:1041271-1041041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):139, 20

               
               
               Conread position:5-249
               
               
               Cow position:chr26:30298742-30298984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):147, 22

               
               
               Conread position:5-378
               
               
               Cow position:chr26:23096928-23097278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):277, 21

               
               
               Conread position:6-229
               
               
               Cow position:chr26:31711802-31712020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):138, 17

               
               
               Conread position:6-393
               
               
               Cow position:chr26:30861484-30861860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:260
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):82, 25

               
               
               Conread position:6-411
               
               
               Cow position:chr26:6037148-6037570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:284
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):15, 194

               
               
               Conread position:7-352
               
               
               Cow position:chr26:15212063-15211727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):15, 123

               
               
               Conread position:8-421
               
               
               Cow position:chr26:34026770-34027185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:274
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):136, 14

               
               
               Conread position:9-332
               
               
               Cow position:chr26:33201804-33202124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 16

               
               
               Conread position:10-246
               
               
               Cow position:chr26:31062693-31062446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 41

               
               
               Conread position:11-142
               
               
               Cow position:chr26:31205353-31205222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 16

               
               
               Conread position:14-373
               
               
               Cow position:chr26:11964376-11964027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:242
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):101, 39

               
               
               Conread position:16-384
               
               
               Cow position:chr26:17057928-17057576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):200, 43

               
               
               Conread position:21-378
               
               
               Cow position:chr26:7642317-7642675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):7, 137

               
               
               Conread position:25-361
               
               
               Cow position:chr26:3707050-3706711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):102, 67

               
               
               Conread position:26-244
               
               
               Cow position:chr26:23481006-23481218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):138, 23

               
               
               Conread position:27-373
               
               
               Cow position:chr26:33096308-33096655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):127, 29

               
               
               Conread position:29-318
               
               
               Cow position:chr26:18763494-18763780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):117, 24

               
               
               Conread position:29-347
               
               
               Cow position:chr26:23623797-23624115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):149, 132

               
               
               Conread position:29-363
               
               
               Cow position:chr26:5715078-5714752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 148

               
               
               Conread position:29-410
               
               
               Cow position:chr26:34256539-34256169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:268
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):70, 22

               
               
               Conread position:30-234
               
               
               Cow position:chr26:5233212-5233017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:30-378
               
               
               Cow position:chr26:4807801-4807461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:246
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):117, 23

               
               
               Conread position:31-177
               
               
               Cow position:chr26:18651889-18651746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):120, 26

               
               
               Conread position:31-321
               
               
               Cow position:chr26:22237055-22236773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 215

               
               
               Conread position:31-378
               
               
               Cow position:chr26:5102578-5102920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:31-378
               
               
               Cow position:chr26:8035106-8034764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):10, 36

               
               
               Conread position:31-384
               
               
               Cow position:chr26:23141860-23142212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:31-384
               
               
               Cow position:chr26:35449302-35448954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 62

               
               
               Conread position:32-384
               
               
               Cow position:chr26:32670254-32670598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):59, 116

               
               
               Conread position:32-386
               
               
               Cow position:chr26:6794389-6794041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):139, 21

               
               
               Conread position:33-252
               
               
               Cow position:chr26:9661987-9662203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):94, 31

               
               
               Conread position:33-355
               
               
               Cow position:chr26:17212440-17212110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):22, 269

               
               
               Conread position:33-378
               
               
               Cow position:chr26:33253074-33253420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 119

               
               
               Conread position:33-387
               
               
               Cow position:chr26:23000796-23001151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 32

               
               
               Conread position:34-341
               
               
               Cow position:chr26:20824882-20825173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):230, 30

               
               
               Conread position:34-368
               
               
               Cow position:chr26:27163692-27163363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):120, 19

               
               
               Conread position:37-241
               
               
               Cow position:chr26:5833174-5832972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):134, 16

               
               
               Conread position:37-374
               
               
               Cow position:chr26:7687003-7687337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 119

               
               
               Conread position:37-384
               
               
               Cow position:chr26:23671655-23671306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 34

               
               
               Conread position:37-384
               
               
               Cow position:chr26:25394278-25393924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 14

               
               
               Conread position:37-384
               
               
               Cow position:chr26:29333327-29332983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):28, 55

               
               
               Conread position:38-316
               
               
               Cow position:chr26:19636522-19636251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):173, 13

               
               
               Conread position:38-340
               
               
               Cow position:chr26:218221-218520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):120, 15

               
               
               Conread position:38-358
               
               
               Cow position:chr26:13974902-13975213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 86

               
               
               Conread position:39-291
               
               
               Cow position:chr26:33242127-33241873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):62, 17

               
               
               Conread position:39-368
               
               
               Cow position:chr26:26322425-26322102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):220, 14

               
               
               Conread position:39-384
               
               
               Cow position:chr26:31856942-31856596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):223, 14

               
               
               Conread position:40-234
               
               
               Cow position:chr26:27482326-27482523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 138

               
               
               Conread position:41-251
               
               
               Cow position:chr26:8341721-8341522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):22, 51

               
               
               Conread position:41-252
               
               
               Cow position:chr26:9099300-9099507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:42-296
               
               
               Cow position:chr26:2701751-2702004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):104, 114

               
               
               Conread position:43-384
               
               
               Cow position:chr26:25526478-25526140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:44-255
               
               
               Cow position:chr26:16585661-16585457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:46-251
               
               
               Cow position:chr26:10700674-10700876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:46-262
               
               
               Cow position:chr26:13862808-13863019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):15, 100

               
               
               Conread position:46-378
               
               
               Cow position:chr26:8306630-8306295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):19, 80

               
               
               Conread position:47-343
               
               
               Cow position:chr26:31892269-31891979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):107, 26

               
               
               Conread position:47-384
               
               
               Cow position:chr26:12144888-12145226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 300

               
               
               Conread position:48-258
               
               
               Cow position:chr26:3192222-3192426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):192, 5

               
               
               Conread position:48-297
               
               
               Cow position:chr26:1328637-1328877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:48-320
               
               
               Cow position:chr26:5168620-5168349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):216, 97

               
               
               Conread position:48-384
               
               
               Cow position:chr26:21243314-21242993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):116, 79

               
               
               Conread position:48-384
               
               
               Cow position:chr26:34314904-34314582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):118, 5

               
               
               Conread position:49-230
               
               
               Cow position:chr26:754683-754864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 103

               
               
               Conread position:49-311
               
               
               Cow position:chr26:12940635-12940368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:204
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):13, 44

               
               
               Conread position:49-384
               
               
               Cow position:chr26:586646-586982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):71, 142

               
               
               Conread position:49-384
               
               
               Cow position:chr26:3758015-3757687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):12, 101

               
               
               Conread position:49-384
               
               
               Cow position:chr26:6714072-6714400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 134

               
               
               Conread position:49-384
               
               
               Cow position:chr26:18825057-18825388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):209, 97

               
               
               Conread position:49-385
               
               
               Cow position:chr26:19110400-19110076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):222, 34

               
               
               Conread position:50-202
               
               
               Cow position:chr26:13800735-13800585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 96

               
               
               Conread position:50-235
               
               
               Cow position:chr26:28444666-28444853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):94, 137

               
               
               Conread position:50-252
               
               
               Cow position:chr26:33466223-33466413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:50-268
               
               
               Cow position:chr26:32517243-32517448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):214, 7

               
               
               Conread position:50-286
               
               
               Cow position:chr26:25225505-25225743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 14

               
               
               Conread position:50-296
               
               
               Cow position:chr26:6487566-6487820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):192, 96

               
               
               Conread position:50-329
               
               
               Cow position:chr26:28423511-28423234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):214, 95

               
               
               Conread position:50-332
               
               
               Cow position:chr26:21617022-21616737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):10, 202

               
               
               Conread position:50-346
               
               
               Cow position:chr26:19591704-19591412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 78

               
               
               Conread position:50-378
               
               
               Cow position:chr26:20260807-20260480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):123, 101

               
               
               Conread position:50-379
               
               
               Cow position:chr26:19459922-19459584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):45, 93

               
               
               Conread position:50-379
               
               
               Cow position:chr26:33074269-33074599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):16, 103

               
               
               Conread position:50-383
               
               
               Cow position:chr26:12964456-12964802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 185

               
               
               Conread position:50-384
               
               
               Cow position:chr26:12893202-12893528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):16, 88

               
               
               Conread position:50-384
               
               
               Cow position:chr26:19446364-19446020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 167

               
               
               Conread position:50-384
               
               
               Cow position:chr26:24240905-24240569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 26

               
               
               Conread position:50-384
               
               
               Cow position:chr26:28251380-28251039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 62

               
               
               Conread position:50-384
               
               
               Cow position:chr26:34108969-34108656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):205, 59

               
               
               Conread position:50-386
               
               
               Cow position:chr26:4854771-4854430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):11, 116

               
               
               Conread position:51-210
               
               
               Cow position:chr26:13292897-13292738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):110, 6

               
               
               Conread position:51-384
               
               
               Cow position:chr26:4584987-4585315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):213, 160

               
               
               Conread position:52-220
               
               
               Cow position:chr26:21320168-21320003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:52-230
               
               
               Cow position:chr26:10502947-10502776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):124, 12

               
               
               Conread position:52-241
               
               
               Cow position:chr26:21822825-21823009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):113, 12

               
               
               Conread position:52-256
               
               
               Cow position:chr26:13022688-13022483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 92

               
               
               Conread position:52-384
               
               
               Cow position:chr26:9492142-9491819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 93

               
               
               Conread position:52-384
               
               
               Cow position:chr26:26887914-26888237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 99

               
               
               Conread position:53-197
               
               
               Cow position:chr26:5307341-5307196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:53-239
               
               
               Cow position:chr26:26244946-26245132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):94, 131

               
               
               Conread position:53-332
               
               
               Cow position:chr26:7148078-7148358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):103, 233

               
               
               Conread position:53-344
               
               
               Cow position:chr26:21636829-21637107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):211, 74

               
               
               Conread position:53-345
               
               
               Cow position:chr26:14481344-14481621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):214, 69

               
               
               Conread position:53-373
               
               
               Cow position:chr26:13828277-13827977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):245, 33

               
               
               Conread position:53-383
               
               
               Cow position:chr26:647500-647826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 192

               
               
               Conread position:53-384
               
               
               Cow position:chr26:8811353-8811023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):75, 250

               
               
               Conread position:53-384
               
               
               Cow position:chr26:13978908-13979237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):111, 73

               
               
               Conread position:54-241
               
               
               Cow position:chr26:29900839-29901025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:54-246
               
               
               Cow position:chr26:12807084-12807269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:54-268
               
               
               Cow position:chr26:5407201-5406988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:54-289
               
               
               Cow position:chr26:107262-107012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):80, 38

               
               
               Conread position:54-379
               
               
               Cow position:chr26:34060557-34060232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):82, 239

               
               
               Conread position:54-384
               
               
               Cow position:chr26:3071758-3072069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):21, 75

               
               
               Conread position:55-238
               
               
               Cow position:chr26:16801205-16801019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:56-238
               
               
               Cow position:chr26:31382534-31382359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:56-348
               
               
               Cow position:chr26:23112258-23111971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 132

               
               
               Conread position:56-348
               
               
               Cow position:chr26:35686614-35686327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):101, 30

               
               
               Conread position:56-378
               
               
               Cow position:chr26:22348791-22349107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):110, 128

               
               
               Conread position:57-241
               
               
               Cow position:chr26:13705550-13705741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 112

               
               
               Conread position:57-252
               
               
               Cow position:chr26:12028016-12028212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):97, 131

               
               
               Conread position:57-270
               
               
               Cow position:chr26:16795994-16796200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):207, 61

               
               
               Conread position:57-309
               
               
               Cow position:chr26:34559953-34560202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):207, 89

               
               
               Conread position:57-310
               
               
               Cow position:chr26:7314847-7314585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:57-339
               
               
               Cow position:chr26:22033696-22033420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:57-342
               
               
               Cow position:chr26:18530006-18529715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):70, 164

               
               
               Conread position:57-361
               
               
               Cow position:chr26:23925062-23924764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 64

               
               
               Conread position:57-363
               
               
               Cow position:chr26:8307313-8307608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 33

               
               
               Conread position:57-365
               
               
               Cow position:chr26:32815570-32815880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):89, 143

               
               
               Conread position:57-369
               
               
               Cow position:chr26:6515051-6514750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):208, 71

               
               
               Conread position:57-377
               
               
               Cow position:chr26:4513353-4513662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):89, 37

               
               
               Conread position:57-384
               
               
               Cow position:chr26:14905598-14905918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):212, 81

               
               
               Conread position:57-384
               
               
               Cow position:chr26:20291474-20291789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 95

               
               
               Conread position:57-384
               
               
               Cow position:chr26:21913021-21912680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):90, 21

               
               
               Conread position:57-384
               
               
               Cow position:chr26:34724656-34724982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 90

               
               
               Conread position:57-387
               
               
               Cow position:chr26:32566228-32565906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:57-390
               
               
               Cow position:chr26:32955427-32955745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):173, 75

               
               
               Conread position:58-280
               
               
               Cow position:chr26:34610969-34611185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 69

               
               
               Conread position:58-316
               
               
               Cow position:chr26:30283989-30284250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):84, 68

               
               
               Conread position:59-238
               
               
               Cow position:chr26:28247065-28246886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):125, 106

               
               
               Conread position:59-249
               
               
               Cow position:chr26:8811691-8811500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):87, 135

               
               
               Conread position:59-252
               
               
               Cow position:chr26:25407598-25407417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):176, 68

               
               
               Conread position:59-282
               
               
               Cow position:chr26:18872829-18872603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):97, 128

               
               
               Conread position:59-325
               
               
               Cow position:chr26:11538752-11538483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):77, 130

               
               
               Conread position:59-344
               
               
               Cow position:chr26:10764431-10764148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:59-376
               
               
               Cow position:chr26:31854449-31854133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):192, 92

               
               
               Conread position:59-383
               
               
               Cow position:chr26:16550204-16549879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 36

               
               
               Conread position:59-384
               
               
               Cow position:chr26:9604772-9604452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):37, 70

               
               
               Conread position:59-384
               
               
               Cow position:chr26:26293963-26294303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):65, 46

               
               
               Conread position:59-384
               
               
               Cow position:chr26:31137249-31137556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:59-387
               
               
               Cow position:chr26:32834357-32834684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):79, 195

               
               
               Conread position:60-212
               
               
               Cow position:chr26:12891756-12891906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 91

               
               
               Conread position:60-253
               
               
               Cow position:chr26:33038010-33038199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:60-255
               
               
               Cow position:chr26:34114480-34114284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):92, 80

               
               
               Conread position:60-301
               
               
               Cow position:chr26:5666256-5666024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):125, 31

               
               
               Conread position:60-318
               
               
               Cow position:chr26:32830299-32830042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):87, 134

               
               
               Conread position:60-384
               
               
               Cow position:chr26:9535729-9535411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 74

               
               
               Conread position:60-384
               
               
               Cow position:chr26:14175509-14175173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):67, 31

               
               
               Conread position:60-384
               
               
               Cow position:chr26:20770066-20769748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 92

               
               
               Conread position:60-384
               
               
               Cow position:chr26:22892232-22892549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 81

               
               
               Conread position:60-384
               
               
               Cow position:chr26:23848580-23848909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):65, 59

               
               
               Conread position:61-245
               
               
               Cow position:chr26:3930316-3930502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 126

               
               
               Conread position:61-274
               
               
               Cow position:chr26:11672515-11672299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):84, 126

               
               
               Conread position:61-274
               
               
               Cow position:chr26:31888944-31888735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):201, 65

               
               
               Conread position:61-280
               
               
               Cow position:chr26:28100252-28100040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 62

               
               
               Conread position:61-283
               
               
               Cow position:chr26:11875010-11875228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):203, 31

               
               
               Conread position:61-379
               
               
               Cow position:chr26:31633946-31633627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):83, 226

               
               
               Conread position:61-382
               
               
               Cow position:chr26:33112171-33112487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 83

               
               
               Conread position:61-384
               
               
               Cow position:chr26:798093-798405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):149, 67

               
               
               Conread position:63-367
               
               
               Cow position:chr26:4167137-4167446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):84, 122

               
               
               Conread position:63-383
               
               
               Cow position:chr26:26950249-26950551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):200, 35

               
               
               Conread position:63-384
               
               
               Cow position:chr26:16784039-16783717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):9, 82

               
               
               Conread position:64-257
               
               
               Cow position:chr26:6823371-6823179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 41

               
               
               Conread position:64-268
               
               
               Cow position:chr26:16435439-16435648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 20

               
               
               Conread position:64-280
               
               
               Cow position:chr26:19671689-19671474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 108

               
               
               Conread position:64-384
               
               
               Cow position:chr26:22249278-22249585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):202, 76

               
               
               Conread position:68-262
               
               
               Cow position:chr26:32353514-32353705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:68-272
               
               
               Cow position:chr26:9501917-9501713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):76, 26

               
               
               Conread position:68-366
               
               
               Cow position:chr26:2994492-2994779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:68-384
               
               
               Cow position:chr26:32897672-32897978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 71

               
               
               Conread position:72-249
               
               
               Cow position:chr26:28244035-28243857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):74, 114

               
               
               Conread position:72-322
               
               
               Cow position:chr26:10146100-10145856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 111

               
               
               Conread position:72-366
               
               
               Cow position:chr26:29889311-29889586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:72-377
               
               
               Cow position:chr26:14950943-14951246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):110, 19

               
               
               Conread position:72-382
               
               
               Cow position:chr26:35704577-35704285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):192, 49

               
               
               Conread position:72-384
               
               
               Cow position:chr26:14174507-14174193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):74, 104

               
               
               Conread position:72-384
               
               
               Cow position:chr26:32601559-32601246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):65, 226

               
               
               Conread position:73-369
               
               
               Cow position:chr26:10965383-10965681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):69, 219

               
               
               Conread position:73-379
               
               
               Cow position:chr26:13802311-13802012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):191, 68

               
               
               Conread position:74-365
               
               
               Cow position:chr26:3559004-3559304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 113

               
               
               Conread position:74-373
               
               
               Cow position:chr26:22132009-22131709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):80, 102

               
               
               Conread position:74-378
               
               
               Cow position:chr26:3554307-3554611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):186, 12

               
               
               Conread position:74-385
               
               
               Cow position:chr26:33736357-33736659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):112, 18

               
               
               Conread position:75-384
               
               
               Cow position:chr26:27491295-27491608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 151

               
               
               Conread position:79-378
               
               
               Cow position:chr26:34661045-34660745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 67

               
               
               Conread position:90-229
               
               
               Cow position:chr26:29897372-29897235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:90-332
               
               
               Cow position:chr26:18677056-18677307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:95-384
               
               
               Cow position:chr26:31903350-31903057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):59, 90

               
               
               Conread position:97-254
               
               
               Cow position:chr26:7525030-7525180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:105-384
               
               
               Cow position:chr26:24629906-24629633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 147

               
               
               Conread position:114-384
               
               
               Cow position:chr26:32652571-32652833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 12

               
               
               Conread position:119-384
               
               
               Cow position:chr26:23582786-23583053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):15, 38

               
               
               Conread position:128-368
               
               
               Cow position:chr26:677831-678070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):16, 24

               
               
               Conread position:128-383
               
               
               Cow position:chr26:13020998-13021251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):136, 18

               
               
               Conread position:129-282
               
               
               Cow position:chr26:13292667-13292513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:129-332
               
               
               Cow position:chr26:33392540-33392337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):57, 23

               
               
               Conread position:129-352
               
               
               Cow position:chr26:7212438-7212661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):111, 23

               
               
               Conread position:129-366
               
               
               Cow position:chr26:32836386-32836152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):135, 22

               
               
               Conread position:129-378
               
               
               Cow position:chr26:9104134-9104380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):133, 22

               
               
               Conread position:130-384
               
               
               Cow position:chr26:23315921-23315663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:131-302
               
               
               Cow position:chr26:34154278-34154108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):133, 28

               
               
               Conread position:131-332
               
               
               Cow position:chr26:26537377-26537581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:131-348
               
               
               Cow position:chr26:8699900-8700118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):13, 155

               
               
               Conread position:131-368
               
               
               Cow position:chr26:32776365-32776598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):6, 54

               
               
               Conread position:131-377
               
               
               Cow position:chr26:30254488-30254727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):133, 88

               
               
               Conread position:131-383
               
               
               Cow position:chr26:16922082-16921833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):135, 22

               
               
               Conread position:131-384
               
               
               Cow position:chr26:19774154-19774410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:131-384
               
               
               Cow position:chr26:31605552-31605299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 147

               
               
               Conread position:132-283
               
               
               Cow position:chr26:6337930-6337785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:132-289
               
               
               Cow position:chr26:26329052-26328900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):132, 42

               
               
               Conread position:132-383
               
               
               Cow position:chr26:8353114-8352856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):132, 240

               
               
               Conread position:132-384
               
               
               Cow position:chr26:2739310-2739565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):54, 41

               
               
               Conread position:134-383
               
               
               Cow position:chr26:22354557-22354307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):47, 152

               
               
               Conread position:134-384
               
               
               Cow position:chr26:22152368-22152118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:137-368
               
               
               Cow position:chr26:6865165-6864925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:142-383
               
               
               Cow position:chr26:8643076-8642837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):122, 79

               
               
               Conread position:146-271
               
               
               Cow position:chr26:32362106-32361979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:146-315
               
               
               Cow position:chr26:18740926-18741098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:146-384
               
               
               Cow position:chr26:33566913-33567154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):125, 113

               
               
               Conread position:147-383
               
               
               Cow position:chr26:613543-613784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):99, 62

               
               
               Conread position:148-384
               
               
               Cow position:chr26:12237900-12238129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):116, 100

               
               
               Conread position:148-384
               
               
               Cow position:chr26:17148833-17148597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):157, 46

               
               
               Conread position:151-384
               
               
               Cow position:chr26:16721990-16721760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):87, 132

               
               
               Conread position:152-355
               
               
               Cow position:chr26:34106518-34106321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):112, 67

               
               
               Conread position:153-332
               
               
               Cow position:chr26:28339298-28339477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):111, 8

               
               
               Conread position:153-378
               
               
               Cow position:chr26:15200392-15200614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):112, 64

               
               
               Conread position:153-384
               
               
               Cow position:chr26:26466608-26466828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):112, 79

               
               
               Conread position:155-352
               
               
               Cow position:chr26:1325879-1325694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:155-378
               
               
               Cow position:chr26:5246356-5246581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):108, 145

               
               
               Conread position:155-384
               
               
               Cow position:chr26:6475307-6475537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):114, 50

               
               
               Conread position:155-384
               
               
               Cow position:chr26:34847866-34847635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:156-282
               
               
               Cow position:chr26:17652081-17651954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:179-332
               
               
               Cow position:chr26:22602940-22603094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):89, 106

               
               
               Conread position:181-384
               
               
               Cow position:chr26:32832281-32832080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 74

               
               
               Conread position:182-384
               
               
               Cow position:chr26:18651541-18651741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):62, 40

               
               
               Conread position:185-355
               
               
               Cow position:chr26:15857826-15857654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):59, 77

               
               
               Conread position:185-384
               
               
               Cow position:chr26:25299691-25299492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):81, 103

               
               
               Conread position:188-384
               
               
               Cow position:chr26:16179651-16179456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):69, 100

               
               
               Conread position:191-384
               
               
               Cow position:chr26:21992188-21991995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):73, 94

               
               
               Conread position:193-378
               
               
               Cow position:chr26:6486567-6486755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:203-384
               
               
               Cow position:chr26:35302147-35302336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:206-384
               
               
               Cow position:chr26:10747563-10747733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):95, 21

               
               
               Conread position:222-384
               
               
               Cow position:chr26:32013688-32013521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:223-384
               
               
               Cow position:chr26:5307197-5307029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:1-248
               
               
               Cow position:chr27:18791816-18791565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):148, 177

               
               
               Conread position:1-378
               
               
               Cow position:chr27:1353280-1353661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:261
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):28, 22

               
               
               Conread position:4-257
               
               
               Cow position:chr27:10581239-10581482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:4-304
               
               
               Cow position:chr27:20718986-20719289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 34

               
               
               Conread position:5-248
               
               
               Cow position:chr27:27529106-27528876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):181, 19

               
               
               Conread position:6-332
               
               
               Cow position:chr27:7304899-7304588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):148, 20

               
               
               Conread position:8-229
               
               
               Cow position:chr27:11528633-11528856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):25, 19

               
               
               Conread position:8-384
               
               
               Cow position:chr27:15865314-15865686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):23, 16

               
               
               Conread position:8-412
               
               
               Cow position:chr27:21393786-21393395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):163, 59

               
               
               Conread position:9-258
               
               
               Cow position:chr27:9504263-9504505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):137, 12

               
               
               Conread position:10-238
               
               
               Cow position:chr27:21201898-21202127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):136, 54

               
               
               Conread position:12-385
               
               
               Cow position:chr27:26434100-26433729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):122, 12

               
               
               Conread position:19-383
               
               
               Cow position:chr27:20354317-20354663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):120, 54

               
               
               Conread position:20-384
               
               
               Cow position:chr27:28896597-28896954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):126, 33

               
               
               Conread position:21-344
               
               
               Cow position:chr27:4720408-4720072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:22-332
               
               
               Cow position:chr27:13255079-13254775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):27, 86

               
               
               Conread position:22-384
               
               
               Cow position:chr27:27554961-27554602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 54

               
               
               Conread position:23-341
               
               
               Cow position:chr27:23507375-23507687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):127, 34

               
               
               Conread position:26-321
               
               
               Cow position:chr27:236997-237287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):83, 17

               
               
               Conread position:26-384
               
               
               Cow position:chr27:22171027-22171380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 10

               
               
               Conread position:27-224
               
               
               Cow position:chr27:6330357-6330557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 161

               
               
               Conread position:27-329
               
               
               Cow position:chr27:2886109-2885807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):161, 49

               
               
               Conread position:28-224
               
               
               Cow position:chr27:22583468-22583667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):126, 160

               
               
               Conread position:28-384
               
               
               Cow position:chr27:13875453-13875811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:29-250
               
               
               Cow position:chr27:24358065-24358279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):32, 99

               
               
               Conread position:29-279
               
               
               Cow position:chr27:7425460-7425212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):234, 8

               
               
               Conread position:29-403
               
               
               Cow position:chr27:11480909-11480532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:259
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):107, 33

               
               
               Conread position:30-305
               
               
               Cow position:chr27:30483576-30483296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):119, 23

               
               
               Conread position:30-366
               
               
               Cow position:chr27:23128193-23128518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):117, 43

               
               
               Conread position:31-220
               
               
               Cow position:chr27:22748057-22748244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:31-263
               
               
               Cow position:chr27:26400988-26400762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):161, 33

               
               
               Conread position:31-282
               
               
               Cow position:chr27:23918301-23918055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):76, 20

               
               
               Conread position:31-378
               
               
               Cow position:chr27:15870889-15871234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:31-378
               
               
               Cow position:chr27:22427103-22426758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):95, 19

               
               
               Conread position:31-384
               
               
               Cow position:chr27:426699-427049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 26

               
               
               Conread position:31-384
               
               
               Cow position:chr27:6787679-6788036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):29, 22

               
               
               Conread position:31-384
               
               
               Cow position:chr27:16284215-16284549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:254
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):26, 94

               
               
               Conread position:31-384
               
               
               Cow position:chr27:26226562-26226209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 123

               
               
               Conread position:31-394
               
               
               Cow position:chr27:22220276-22220648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:32-253
               
               
               Cow position:chr27:24356762-24356987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):31, 49

               
               
               Conread position:32-290
               
               
               Cow position:chr27:24240081-24240351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 59

               
               
               Conread position:32-343
               
               
               Cow position:chr27:7649863-7649545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):26, 78

               
               
               Conread position:32-352
               
               
               Cow position:chr27:20869953-20869644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:32-365
               
               
               Cow position:chr27:20514558-20514882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):122, 16

               
               
               Conread position:32-380
               
               
               Cow position:chr27:19546796-19546430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:246
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):34, 133

               
               
               Conread position:32-389
               
               
               Cow position:chr27:10658909-10659271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):105, 21

               
               
               Conread position:33-289
               
               
               Cow position:chr27:31386904-31386644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 115

               
               
               Conread position:33-367
               
               
               Cow position:chr27:23582606-23582927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):78, 20

               
               
               Conread position:33-384
               
               
               Cow position:chr27:6499789-6500141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):104, 40

               
               
               Conread position:34-235
               
               
               Cow position:chr27:23477679-23477877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:34-271
               
               
               Cow position:chr27:15926527-15926764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):13, 111

               
               
               Conread position:34-382
               
               
               Cow position:chr27:30914740-30915084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):110, 19

               
               
               Conread position:34-384
               
               
               Cow position:chr27:23929708-23930054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):22, 89

               
               
               Conread position:34-384
               
               
               Cow position:chr27:29431203-29431537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:251
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):13, 97

               
               
               Conread position:35-342
               
               
               Cow position:chr27:16704990-16705290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):222, 15

               
               
               Conread position:35-377
               
               
               Cow position:chr27:25809785-25809449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):18, 71

               
               
               Conread position:35-384
               
               
               Cow position:chr27:26509423-26509080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):122, 38

               
               
               Conread position:36-199
               
               
               Cow position:chr27:23527766-23527606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:36-236
               
               
               Cow position:chr27:27606559-27606364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:37-216
               
               
               Cow position:chr27:672400-672579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:37-257
               
               
               Cow position:chr27:11208823-11208602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):109, 150

               
               
               Conread position:37-282
               
               
               Cow position:chr27:26121493-26121739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):112, 33

               
               
               Conread position:37-355
               
               
               Cow position:chr27:23859898-23860220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):112, 43

               
               
               Conread position:37-368
               
               
               Cow position:chr27:27405335-27405005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):112, 194

               
               
               Conread position:37-373
               
               
               Cow position:chr27:10979594-10979928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):110, 253

               
               
               Conread position:37-384
               
               
               Cow position:chr27:7412128-7412459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 109

               
               
               Conread position:37-384
               
               
               Cow position:chr27:30869015-30868662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):110, 20

               
               
               Conread position:38-218
               
               
               Cow position:chr27:21143340-21143154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):100, 25

               
               
               Conread position:38-269
               
               
               Cow position:chr27:22401219-22401452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):139, 26

               
               
               Conread position:38-348
               
               
               Cow position:chr27:26852846-26852548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):108, 35

               
               
               Conread position:38-363
               
               
               Cow position:chr27:1190739-1190416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):109, 19

               
               
               Conread position:38-384
               
               
               Cow position:chr27:20078602-20078947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:39-264
               
               
               Cow position:chr27:29614779-29615002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:39-269
               
               
               Cow position:chr27:26323176-26323413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):28, 223

               
               
               Conread position:39-283
               
               
               Cow position:chr27:29319141-29319391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:39-335
               
               
               Cow position:chr27:12564691-12564392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):97, 25

               
               
               Conread position:39-384
               
               
               Cow position:chr27:18558093-18558441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):18, 130

               
               
               Conread position:40-384
               
               
               Cow position:chr27:26428396-26428052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:209
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):16, 70

               
               
               Conread position:41-309
               
               
               Cow position:chr27:31004676-31004947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):15, 53

               
               
               Conread position:41-316
               
               
               Cow position:chr27:28478324-28478594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:200
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):221, 12

               
               
               Conread position:43-332
               
               
               Cow position:chr27:10436987-10436702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):210, 21

               
               
               Conread position:43-378
               
               
               Cow position:chr27:22513940-22513605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):96, 21

               
               
               Conread position:43-384
               
               
               Cow position:chr27:18031329-18030980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:44-384
               
               
               Cow position:chr27:8353237-8353553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 13

               
               
               Conread position:45-252
               
               
               Cow position:chr27:11507521-11507315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):114, 19

               
               
               Conread position:45-368
               
               
               Cow position:chr27:7935416-7935094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):172, 241

               
               
               Conread position:45-384
               
               
               Cow position:chr27:2957159-2957481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):222, 77

               
               
               Conread position:46-332
               
               
               Cow position:chr27:19932810-19933093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):98, 18

               
               
               Conread position:47-365
               
               
               Cow position:chr27:7346416-7346725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 10

               
               
               Conread position:47-366
               
               
               Cow position:chr27:16965320-16965635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):82, 6

               
               
               Conread position:47-384
               
               
               Cow position:chr27:23594061-23594396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 144

               
               
               Conread position:47-384
               
               
               Cow position:chr27:30872311-30871979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):100, 6

               
               
               Conread position:48-231
               
               
               Cow position:chr27:31153811-31153630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 44

               
               
               Conread position:48-248
               
               
               Cow position:chr27:18752594-18752800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):90, 5

               
               
               Conread position:48-269
               
               
               Cow position:chr27:6162657-6162445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:48-316
               
               
               Cow position:chr27:20897278-20897011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):14, 100

               
               
               Conread position:48-317
               
               
               Cow position:chr27:26437373-26437105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):130, 5

               
               
               Conread position:48-332
               
               
               Cow position:chr27:6290220-6290500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:48-341
               
               
               Cow position:chr27:12425033-12425325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):96, 130

               
               
               Conread position:48-355
               
               
               Cow position:chr27:8962498-8962205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):17, 48

               
               
               Conread position:48-378
               
               
               Cow position:chr27:29831964-29831616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):5, 254

               
               
               Conread position:48-384
               
               
               Cow position:chr27:20828960-20828632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:49-255
               
               
               Cow position:chr27:18688666-18688458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):98, 138

               
               
               Conread position:49-272
               
               
               Cow position:chr27:6241446-6241223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):216, 34

               
               
               Conread position:49-291
               
               
               Cow position:chr27:10598733-10598977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):100, 137

               
               
               Conread position:49-367
               
               
               Cow position:chr27:20749256-20748944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):215, 92

               
               
               Conread position:49-368
               
               
               Cow position:chr27:26112171-26111845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):97, 8

               
               
               Conread position:49-384
               
               
               Cow position:chr27:2592283-2592629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):78, 109

               
               
               Conread position:49-384
               
               
               Cow position:chr27:19500491-19500154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):11, 139

               
               
               Conread position:50-170
               
               
               Cow position:chr27:26315393-26315275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:50-210
               
               
               Cow position:chr27:4487032-4486871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:50-220
               
               
               Cow position:chr27:21660884-21661052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:50-223
               
               
               Cow position:chr27:25000222-25000041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:50-235
               
               
               Cow position:chr27:23232660-23232847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:50-237
               
               
               Cow position:chr27:27450135-27449952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-251
               
               
               Cow position:chr27:4398738-4398544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):100, 73

               
               
               Conread position:50-255
               
               
               Cow position:chr27:12284741-12284945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):63, 106

               
               
               Conread position:50-255
               
               
               Cow position:chr27:27828109-27827900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):109, 200

               
               
               Conread position:50-258
               
               
               Cow position:chr27:11133835-11134040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:50-264
               
               
               Cow position:chr27:19576577-19576363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):12, 98

               
               
               Conread position:50-265
               
               
               Cow position:chr27:3518249-3518466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):94, 137

               
               
               Conread position:50-270
               
               
               Cow position:chr27:19452747-19452969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 17

               
               
               Conread position:50-271
               
               
               Cow position:chr27:8790996-8790773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):6, 65

               
               
               Conread position:50-274
               
               
               Cow position:chr27:7343682-7343457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:50-274
               
               
               Cow position:chr27:30455740-30455965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):96, 71

               
               
               Conread position:50-317
               
               
               Cow position:chr27:11982900-11982635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):96, 15

               
               
               Conread position:50-332
               
               
               Cow position:chr27:29798699-29798982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):94, 133

               
               
               Conread position:50-344
               
               
               Cow position:chr27:18882403-18882695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:50-348
               
               
               Cow position:chr27:5553219-5553509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):104, 41

               
               
               Conread position:50-365
               
               
               Cow position:chr27:28922147-28921836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:50-366
               
               
               Cow position:chr27:22560081-22559762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 68

               
               
               Conread position:50-377
               
               
               Cow position:chr27:15925090-15925414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):87, 36

               
               
               Conread position:50-377
               
               
               Cow position:chr27:27438760-27438436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:50-378
               
               
               Cow position:chr27:18543735-18544068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):184, 133

               
               
               Conread position:50-379
               
               
               Cow position:chr27:19387768-19388089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 44

               
               
               Conread position:50-382
               
               
               Cow position:chr27:11435579-11435243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:50-382
               
               
               Cow position:chr27:29185098-29184760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):129, 234

               
               
               Conread position:50-383
               
               
               Cow position:chr27:7212982-7212638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:248
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):88, 7

               
               
               Conread position:50-384
               
               
               Cow position:chr27:15453959-15454291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 45

               
               
               Conread position:50-384
               
               
               Cow position:chr27:17472562-17472893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 15

               
               
               Conread position:50-384
               
               
               Cow position:chr27:22035625-22035297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 79

               
               
               Conread position:50-384
               
               
               Cow position:chr27:28002056-28001729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):142, 77

               
               
               Conread position:50-384
               
               
               Cow position:chr27:30890048-30890367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):214, 77

               
               
               Conread position:51-366
               
               
               Cow position:chr27:8062605-8062292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):13, 119

               
               
               Conread position:51-411
               
               
               Cow position:chr27:21990890-21991264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):15, 133

               
               
               Conread position:52-268
               
               
               Cow position:chr27:6106456-6106664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:52-274
               
               
               Cow position:chr27:31169355-31169139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):212, 12

               
               
               Conread position:52-343
               
               
               Cow position:chr27:13940801-13940520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):207, 41

               
               
               Conread position:52-378
               
               
               Cow position:chr27:16088540-16088883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):74, 131

               
               
               Conread position:52-382
               
               
               Cow position:chr27:26424827-26424508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:52-382
               
               
               Cow position:chr27:31231326-31231015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:52-384
               
               
               Cow position:chr27:8630125-8629793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):16, 62

               
               
               Conread position:52-384
               
               
               Cow position:chr27:15867142-15867478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):116, 75

               
               
               Conread position:52-384
               
               
               Cow position:chr27:27460829-27460495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 155

               
               
               Conread position:53-198
               
               
               Cow position:chr27:24952203-24952060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 42

               
               
               Conread position:53-238
               
               
               Cow position:chr27:20127548-20127363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 77

               
               
               Conread position:53-248
               
               
               Cow position:chr27:20048387-20048578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:53-265
               
               
               Cow position:chr27:24223705-24223913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):177, 33

               
               
               Conread position:53-274
               
               
               Cow position:chr27:19681699-19681923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):135, 210

               
               
               Conread position:53-324
               
               
               Cow position:chr27:11561523-11561796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 35

               
               
               Conread position:53-326
               
               
               Cow position:chr27:29597997-29597727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):9, 69

               
               
               Conread position:53-339
               
               
               Cow position:chr27:23560279-23559995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 93

               
               
               Conread position:53-368
               
               
               Cow position:chr27:8168672-8168366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):27, 43

               
               
               Conread position:53-370
               
               
               Cow position:chr27:29164525-29164831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):211, 61

               
               
               Conread position:53-378
               
               
               Cow position:chr27:15315273-15315579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):211, 40

               
               
               Conread position:53-378
               
               
               Cow position:chr27:27020344-27020029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):96, 11

               
               
               Conread position:53-382
               
               
               Cow position:chr27:591018-590687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):85, 20

               
               
               Conread position:53-382
               
               
               Cow position:chr27:6541385-6541707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):213, 87

               
               
               Conread position:53-382
               
               
               Cow position:chr27:6924833-6925167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):84, 11

               
               
               Conread position:53-383
               
               
               Cow position:chr27:16514100-16513804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):13, 52

               
               
               Conread position:53-384
               
               
               Cow position:chr27:14670631-14670304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 73

               
               
               Conread position:53-384
               
               
               Cow position:chr27:19896513-19896833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:53-384
               
               
               Cow position:chr27:20101116-20101447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 126

               
               
               Conread position:53-384
               
               
               Cow position:chr27:28190441-28190137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:53-385
               
               
               Cow position:chr27:30407297-30406955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 178

               
               
               Conread position:53-398
               
               
               Cow position:chr27:24440467-24440135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:54-209
               
               
               Cow position:chr27:22150942-22150789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:54-214
               
               
               Cow position:chr27:28062443-28062288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:54-237
               
               
               Cow position:chr27:3498307-3498484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:54-315
               
               
               Cow position:chr27:31210300-31210559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 90

               
               
               Conread position:54-366
               
               
               Cow position:chr27:10582122-10582435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):85, 26

               
               
               Conread position:54-368
               
               
               Cow position:chr27:13411620-13411299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 96

               
               
               Conread position:54-384
               
               
               Cow position:chr27:14343684-14343386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):159, 48

               
               
               Conread position:54-384
               
               
               Cow position:chr27:16780611-16780948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):73, 29

               
               
               Conread position:55-343
               
               
               Cow position:chr27:212703-213003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 103

               
               
               Conread position:55-384
               
               
               Cow position:chr27:26865356-26865040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):209, 90

               
               
               Conread position:55-385
               
               
               Cow position:chr27:19717650-19718003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:253
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):81, 262

               
               
               Conread position:56-231
               
               
               Cow position:chr27:31183323-31183503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:56-260
               
               
               Cow position:chr27:13204218-13204415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:56-384
               
               
               Cow position:chr27:16103564-16103887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 131

               
               
               Conread position:56-385
               
               
               Cow position:chr27:13251783-13252088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):136, 15

               
               
               Conread position:56-387
               
               
               Cow position:chr27:20283397-20283725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):184, 71

               
               
               Conread position:57-206
               
               
               Cow position:chr27:2934262-2934406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:57-231
               
               
               Cow position:chr27:11145636-11145806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:57-240
               
               
               Cow position:chr27:21951226-21951042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:57-271
               
               
               Cow position:chr27:18435376-18435165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):207, 71

               
               
               Conread position:57-275
               
               
               Cow position:chr27:23957272-23957488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):92, 185

               
               
               Conread position:57-280
               
               
               Cow position:chr27:789053-788820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):64, 20

               
               
               Conread position:57-343
               
               
               Cow position:chr27:17646399-17646128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):207, 17

               
               
               Conread position:57-348
               
               
               Cow position:chr27:23484970-23485257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 37

               
               
               Conread position:57-380
               
               
               Cow position:chr27:4944752-4944442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):208, 69

               
               
               Conread position:57-384
               
               
               Cow position:chr27:15409271-15408963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 63

               
               
               Conread position:57-384
               
               
               Cow position:chr27:17397697-17397370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 84

               
               
               Conread position:57-384
               
               
               Cow position:chr27:22547634-22547328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:57-384
               
               
               Cow position:chr27:23510729-23511070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):87, 165

               
               
               Conread position:57-384
               
               
               Cow position:chr27:26643457-26643758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):244, 39

               
               
               Conread position:57-384
               
               
               Cow position:chr27:27245608-27245273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):87, 29

               
               
               Conread position:57-384
               
               
               Cow position:chr27:27389273-27388943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):70, 99

               
               
               Conread position:57-384
               
               
               Cow position:chr27:27856093-27856411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):205, 29

               
               
               Conread position:57-384
               
               
               Cow position:chr27:28206558-28206874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):207, 71

               
               
               Conread position:58-238
               
               
               Cow position:chr27:31515798-31515615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 94

               
               
               Conread position:58-241
               
               
               Cow position:chr27:6282588-6282771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):92, 116

               
               
               Conread position:58-250
               
               
               Cow position:chr27:21677675-21677478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):62, 132

               
               
               Conread position:58-251
               
               
               Cow position:chr27:9253357-9253169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):128, 87

               
               
               Conread position:58-299
               
               
               Cow position:chr27:26617170-26617399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):206, 37

               
               
               Conread position:58-309
               
               
               Cow position:chr27:17933678-17933934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):68, 94

               
               
               Conread position:58-381
               
               
               Cow position:chr27:28932047-28931716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):191, 179

               
               
               Conread position:58-382
               
               
               Cow position:chr27:24446385-24446080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):19, 84

               
               
               Conread position:58-383
               
               
               Cow position:chr27:15669019-15668691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 257

               
               
               Conread position:59-225
               
               
               Cow position:chr27:18813788-18813618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):118, 112

               
               
               Conread position:59-250
               
               
               Cow position:chr27:19805940-19805750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):90, 119

               
               
               Conread position:59-273
               
               
               Cow position:chr27:10404361-10404147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):103, 135

               
               
               Conread position:59-274
               
               
               Cow position:chr27:6319679-6319890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):127, 69

               
               
               Conread position:59-319
               
               
               Cow position:chr27:19508768-19509030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 95

               
               
               Conread position:59-326
               
               
               Cow position:chr27:26794028-26793766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):106, 117

               
               
               Conread position:59-333
               
               
               Cow position:chr27:22550014-22549742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):107, 141

               
               
               Conread position:59-361
               
               
               Cow position:chr27:31151140-31151434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):90, 20

               
               
               Conread position:59-377
               
               
               Cow position:chr27:17995185-17994870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):85, 33

               
               
               Conread position:59-378
               
               
               Cow position:chr27:12515950-12516265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):90, 51

               
               
               Conread position:59-381
               
               
               Cow position:chr27:26087076-26087371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:59-384
               
               
               Cow position:chr27:4390501-4390177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):90, 35

               
               
               Conread position:59-384
               
               
               Cow position:chr27:7971317-7971650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):118, 67

               
               
               Conread position:59-384
               
               
               Cow position:chr27:16786587-16786903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):200, 74

               
               
               Conread position:59-384
               
               
               Cow position:chr27:28496614-28496298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):205, 15

               
               
               Conread position:59-384
               
               
               Cow position:chr27:29494142-29493832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:60-220
               
               
               Cow position:chr27:178620-178779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:60-221
               
               
               Cow position:chr27:20561345-20561498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:60-238
               
               
               Cow position:chr27:9956677-9956497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):96, 129

               
               
               Conread position:60-244
               
               
               Cow position:chr27:28476351-28476172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):171, 19

               
               
               Conread position:60-254
               
               
               Cow position:chr27:2949559-2949377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:60-262
               
               
               Cow position:chr27:27531881-27532098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:60-267
               
               
               Cow position:chr27:24693175-24693377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):204, 81

               
               
               Conread position:60-274
               
               
               Cow position:chr27:27740536-27740320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):89, 123

               
               
               Conread position:60-286
               
               
               Cow position:chr27:15003222-15002995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:60-301
               
               
               Cow position:chr27:23994658-23994422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):94, 122

               
               
               Conread position:60-304
               
               
               Cow position:chr27:27055053-27055286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):204, 67

               
               
               Conread position:60-340
               
               
               Cow position:chr27:26853594-26853321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):204, 46

               
               
               Conread position:60-348
               
               
               Cow position:chr27:2644341-2644047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):86, 230

               
               
               Conread position:60-366
               
               
               Cow position:chr27:18507402-18507704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):31, 132

               
               
               Conread position:60-368
               
               
               Cow position:chr27:10307546-10307240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):75, 114

               
               
               Conread position:60-368
               
               
               Cow position:chr27:11151427-11151737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):7, 129

               
               
               Conread position:60-369
               
               
               Cow position:chr27:23452220-23452524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 86

               
               
               Conread position:60-383
               
               
               Cow position:chr27:22602931-22603250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):7, 167

               
               
               Conread position:60-384
               
               
               Cow position:chr27:16478565-16478260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):204, 26

               
               
               Conread position:60-384
               
               
               Cow position:chr27:17331249-17331579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):70, 124

               
               
               Conread position:60-384
               
               
               Cow position:chr27:26999666-26999339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 82

               
               
               Conread position:61-265
               
               
               Cow position:chr27:20770758-20770567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):125, 43

               
               
               Conread position:61-354
               
               
               Cow position:chr27:20628817-20629112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):31, 221

               
               
               Conread position:61-378
               
               
               Cow position:chr27:21978385-21978065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):85, 230

               
               
               Conread position:61-384
               
               
               Cow position:chr27:21669353-21669043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 13

               
               
               Conread position:61-384
               
               
               Cow position:chr27:22386646-22386950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):244, 85

               
               
               Conread position:62-250
               
               
               Cow position:chr27:20324898-20325090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:62-329
               
               
               Cow position:chr27:12459047-12459310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):59, 85

               
               
               Conread position:62-341
               
               
               Cow position:chr27:20517411-20517696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):48, 66

               
               
               Conread position:62-383
               
               
               Cow position:chr27:24331473-24331799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):57, 206

               
               
               Conread position:62-384
               
               
               Cow position:chr27:28518052-28518370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:63-247
               
               
               Cow position:chr27:1067336-1067511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:63-375
               
               
               Cow position:chr27:2901505-2901195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):127, 42

               
               
               Conread position:63-377
               
               
               Cow position:chr27:18646389-18646073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):177, 77

               
               
               Conread position:63-383
               
               
               Cow position:chr27:299614-299308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):201, 51

               
               
               Conread position:63-384
               
               
               Cow position:chr27:27632833-27632530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):204, 51

               
               
               Conread position:64-261
               
               
               Cow position:chr27:17102661-17102853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:64-325
               
               
               Cow position:chr27:25151850-25152103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):73, 125

               
               
               Conread position:64-347
               
               
               Cow position:chr27:29593867-29593585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):77, 27

               
               
               Conread position:64-384
               
               
               Cow position:chr27:3306547-3306852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):109, 58

               
               
               Conread position:64-408
               
               
               Cow position:chr27:15204475-15204132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):80, 134

               
               
               Conread position:67-255
               
               
               Cow position:chr27:1184409-1184226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:68-258
               
               
               Cow position:chr27:15859532-15859343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):59, 155

               
               
               Conread position:68-378
               
               
               Cow position:chr27:18739139-18739458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:69-243
               
               
               Cow position:chr27:31031233-31031394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:69-255
               
               
               Cow position:chr27:232317-232505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:69-255
               
               
               Cow position:chr27:26504070-26504253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:69-376
               
               
               Cow position:chr27:20637292-20636994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):167, 69

               
               
               Conread position:69-383
               
               
               Cow position:chr27:4858853-4858567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):195, 58

               
               
               Conread position:69-384
               
               
               Cow position:chr27:30764799-30765118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):85, 108

               
               
               Conread position:70-384
               
               
               Cow position:chr27:434999-435315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):86, 204

               
               
               Conread position:71-384
               
               
               Cow position:chr27:26490137-26489825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):111, 56

               
               
               Conread position:72-239
               
               
               Cow position:chr27:23177543-23177376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):91, 71

               
               
               Conread position:72-331
               
               
               Cow position:chr27:11994098-11993835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):72, 41

               
               
               Conread position:72-368
               
               
               Cow position:chr27:22489041-22489342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):72, 113

               
               
               Conread position:72-368
               
               
               Cow position:chr27:23554560-23554266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):65, 114

               
               
               Conread position:72-378
               
               
               Cow position:chr27:19660697-19661009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:72-384
               
               
               Cow position:chr27:12596551-12596845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):190, 70

               
               
               Conread position:72-384
               
               
               Cow position:chr27:22735825-22735522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):82, 114

               
               
               Conread position:73-282
               
               
               Cow position:chr27:13318207-13317995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):73, 111

               
               
               Conread position:74-347
               
               
               Cow position:chr27:23108131-23107858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 70

               
               
               Conread position:74-384
               
               
               Cow position:chr27:19685939-19685631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 26

               
               
               Conread position:74-384
               
               
               Cow position:chr27:27695004-27694691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 103

               
               
               Conread position:76-384
               
               
               Cow position:chr27:23890706-23891021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 213

               
               
               Conread position:79-384
               
               
               Cow position:chr27:26238800-26239105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 96

               
               
               Conread position:80-343
               
               
               Cow position:chr27:29613714-29613449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):57, 97

               
               
               Conread position:81-334
               
               
               Cow position:chr27:22553100-22552852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):178, 46

               
               
               Conread position:82-384
               
               
               Cow position:chr27:20068196-20067898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):49, 70

               
               
               Conread position:87-293
               
               
               Cow position:chr27:6674052-6674269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 147

               
               
               Conread position:88-378
               
               
               Cow position:chr27:21408781-21408487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):66, 88

               
               
               Conread position:89-388
               
               
               Cow position:chr27:11536321-11536016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):65, 275

               
               
               Conread position:90-288
               
               
               Cow position:chr27:12710027-12710235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 95

               
               
               Conread position:90-384
               
               
               Cow position:chr27:30582524-30582820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):167, 62

               
               
               Conread position:92-384
               
               
               Cow position:chr27:31219057-31219332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:92-394
               
               
               Cow position:chr27:1768833-1768529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):192, 54

               
               
               Conread position:97-384
               
               
               Cow position:chr27:20481562-20481297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):166, 44

               
               
               Conread position:98-320
               
               
               Cow position:chr27:15825928-15825708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):51, 92

               
               
               Conread position:104-373
               
               
               Cow position:chr27:26506544-26506794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:104-384
               
               
               Cow position:chr27:22418963-22418687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):162, 35

               
               
               Conread position:105-378
               
               
               Cow position:chr27:15866021-15866292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):151, 68

               
               
               Conread position:105-384
               
               
               Cow position:chr27:30261093-30260812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):42, 183

               
               
               Conread position:113-384
               
               
               Cow position:chr27:26959804-26959538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):83, 34

               
               
               Conread position:126-378
               
               
               Cow position:chr27:25276966-25277212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):140, 25

               
               
               Conread position:127-369
               
               
               Cow position:chr27:26407334-26407100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):135, 27

               
               
               Conread position:128-270
               
               
               Cow position:chr27:11466637-11466498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):136, 16

               
               
               Conread position:128-331
               
               
               Cow position:chr27:18767239-18767035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):33, 41

               
               
               Conread position:128-371
               
               
               Cow position:chr27:28271328-28271084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 159

               
               
               Conread position:128-378
               
               
               Cow position:chr27:4386237-4385988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):136, 167

               
               
               Conread position:128-378
               
               
               Cow position:chr27:15215053-15215307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):54, 44

               
               
               Conread position:128-382
               
               
               Cow position:chr27:20758207-20757974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):27, 60

               
               
               Conread position:128-382
               
               
               Cow position:chr27:23483050-23483303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):21, 94

               
               
               Conread position:128-383
               
               
               Cow position:chr27:6073757-6074000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):143, 33

               
               
               Conread position:129-282
               
               
               Cow position:chr27:22348317-22348469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:129-326
               
               
               Cow position:chr27:30846484-30846681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):135, 118

               
               
               Conread position:129-346
               
               
               Cow position:chr27:17918488-17918273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):135, 156

               
               
               Conread position:129-362
               
               
               Cow position:chr27:4155823-4156060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 41

               
               
               Conread position:129-368
               
               
               Cow position:chr27:7974001-7974238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 46

               
               
               Conread position:130-285
               
               
               Cow position:chr27:22179940-22179787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):133, 91

               
               
               Conread position:130-343
               
               
               Cow position:chr27:20812735-20812950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):134, 16

               
               
               Conread position:130-368
               
               
               Cow position:chr27:27641182-27640938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:130-382
               
               
               Cow position:chr27:27136692-27136441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):140, 24

               
               
               Conread position:130-384
               
               
               Cow position:chr27:23882541-23882297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):134, 75

               
               
               Conread position:131-282
               
               
               Cow position:chr27:30489581-30489431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):133, 25

               
               
               Conread position:131-328
               
               
               Cow position:chr27:24305265-24305462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):133, 81

               
               
               Conread position:131-339
               
               
               Cow position:chr27:22423344-22423545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-348
               
               
               Cow position:chr27:6302640-6302417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):133, 75

               
               
               Conread position:131-382
               
               
               Cow position:chr27:30359236-30359482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):133, 16

               
               
               Conread position:131-382
               
               
               Cow position:chr27:30988625-30988875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):47, 53

               
               
               Conread position:131-382
               
               
               Cow position:chr27:31148589-31148839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):133, 34

               
               
               Conread position:131-384
               
               
               Cow position:chr27:6550291-6550537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):152, 102

               
               
               Conread position:131-384
               
               
               Cow position:chr27:15378644-15378398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):136, 10

               
               
               Conread position:131-384
               
               
               Cow position:chr27:15643002-15643252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):133, 70

               
               
               Conread position:131-384
               
               
               Cow position:chr27:16589875-16589635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):133, 154

               
               
               Conread position:131-384
               
               
               Cow position:chr27:20795620-20795867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):136, 88

               
               
               Conread position:132-384
               
               
               Cow position:chr27:4819885-4819625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):34, 70

               
               
               Conread position:133-382
               
               
               Cow position:chr27:22454947-22454700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 168

               
               
               Conread position:133-384
               
               
               Cow position:chr27:4672843-4673099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:135-378
               
               
               Cow position:chr27:8942858-8942609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):98, 153

               
               
               Conread position:139-384
               
               
               Cow position:chr27:29504812-29504567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):125, 20

               
               
               Conread position:141-373
               
               
               Cow position:chr27:25721113-25720872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):8, 73

               
               
               Conread position:141-384
               
               
               Cow position:chr27:24321025-24321266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):25, 59

               
               
               Conread position:146-383
               
               
               Cow position:chr27:29380697-29380938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):32, 45

               
               
               Conread position:146-384
               
               
               Cow position:chr27:4813038-4812800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):118, 10

               
               
               Conread position:146-384
               
               
               Cow position:chr27:26413412-26413173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):121, 148

               
               
               Conread position:146-388
               
               
               Cow position:chr27:27038995-27038755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):116, 72

               
               
               Conread position:147-384
               
               
               Cow position:chr27:12246497-12246737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):122, 84

               
               
               Conread position:148-366
               
               
               Cow position:chr27:8405978-8405763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):15, 27

               
               
               Conread position:148-367
               
               
               Cow position:chr27:31017981-31017771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:148-382
               
               
               Cow position:chr27:20641489-20641263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):115, 22

               
               
               Conread position:148-382
               
               
               Cow position:chr27:26581592-26581357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):75, 68

               
               
               Conread position:150-384
               
               
               Cow position:chr27:24014893-24014660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):114, 169

               
               
               Conread position:152-383
               
               
               Cow position:chr27:1122880-1123110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):115, 81

               
               
               Conread position:152-384
               
               
               Cow position:chr27:4835759-4835531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):14, 30

               
               
               Conread position:152-384
               
               
               Cow position:chr27:22569633-22569852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:153-373
               
               
               Cow position:chr27:22225743-22225526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):111, 73

               
               
               Conread position:153-384
               
               
               Cow position:chr27:18593122-18593347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):112, 79

               
               
               Conread position:153-384
               
               
               Cow position:chr27:29312825-29312593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):113, 199

               
               
               Conread position:153-404
               
               
               Cow position:chr27:20092985-20092740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):114, 133

               
               
               Conread position:154-382
               
               
               Cow position:chr27:30354494-30354265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):110, 139

               
               
               Conread position:155-384
               
               
               Cow position:chr27:26150869-26151101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):83, 172

               
               
               Conread position:156-384
               
               
               Cow position:chr27:20553584-20553800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:161-384
               
               
               Cow position:chr27:1498172-1498397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):25, 89

               
               
               Conread position:162-367
               
               
               Cow position:chr27:28245661-28245863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):61, 110

               
               
               Conread position:163-384
               
               
               Cow position:chr27:715361-715583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 5

               
               
               Conread position:174-384
               
               
               Cow position:chr27:16625770-16625978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 53

               
               
               Conread position:178-366
               
               
               Cow position:chr27:21975927-21976111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 123

               
               
               Conread position:178-382
               
               
               Cow position:chr27:25379862-25380071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:187-339
               
               
               Cow position:chr27:21130189-21130344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:187-381
               
               
               Cow position:chr27:706836-707028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):80, 26

               
               
               Conread position:187-384
               
               
               Cow position:chr27:815245-815446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:187-384
               
               
               Cow position:chr27:23472142-23472332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:191-384
               
               
               Cow position:chr27:3784-3966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):73, 63

               
               
               Conread position:191-384
               
               
               Cow position:chr27:4829924-4829723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 10

               
               
               Conread position:194-384
               
               
               Cow position:chr27:30389407-30389215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:195-378
               
               
               Cow position:chr27:8263446-8263263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):69, 88

               
               
               Conread position:198-384
               
               
               Cow position:chr27:30804237-30804420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):72, 35

               
               
               Conread position:199-384
               
               
               Cow position:chr27:20789484-20789297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):66, 135

               
               
               Conread position:203-364
               
               
               Cow position:chr27:24306728-24306888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 19

               
               
               Conread position:214-378
               
               
               Cow position:chr27:2683235-2683070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):50, 73

               
               
               Conread position:245-384
               
               
               Cow position:chr27:16871975-16871833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1-255
               
               
               Cow position:chr28:32015045-32014794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:1-378
               
               
               Cow position:chr28:5144251-5144630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:261
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):22, 53

               
               
               Conread position:1-384
               
               
               Cow position:chr28:7697721-7698099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):146, 25

               
               
               Conread position:1-386
               
               
               Cow position:chr28:4307635-4308023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):143, 24

               
               
               Conread position:2-247
               
               
               Cow position:chr28:3424040-3423795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 150

               
               
               Conread position:2-336
               
               
               Cow position:chr28:12662126-12662472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):17, 65

               
               
               Conread position:2-379
               
               
               Cow position:chr28:19262320-19262701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):59, 23

               
               
               Conread position:3-384
               
               
               Cow position:chr28:22332788-22332417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 54

               
               
               Conread position:5-378
               
               
               Cow position:chr28:30293327-30293698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):20, 60

               
               
               Conread position:5-384
               
               
               Cow position:chr28:22371414-22371795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:275
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):50, 18

               
               
               Conread position:6-368
               
               
               Cow position:chr28:15263462-15263819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):176, 24

               
               
               Conread position:7-214
               
               
               Cow position:chr28:9070141-9069939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:7-283
               
               
               Cow position:chr28:26943899-26944177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 42

               
               
               Conread position:9-283
               
               
               Cow position:chr28:19127919-19128188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:9-378
               
               
               Cow position:chr28:24367688-24368045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):137, 44

               
               
               Conread position:11-214
               
               
               Cow position:chr28:2737272-2737467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 118

               
               
               Conread position:11-348
               
               
               Cow position:chr28:7350904-7350575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:15-383
               
               
               Cow position:chr28:8347982-8347613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 38

               
               
               Conread position:20-317
               
               
               Cow position:chr28:11059729-11059451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):239, 30

               
               
               Conread position:22-378
               
               
               Cow position:chr28:27313485-27313854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 156

               
               
               Conread position:23-195
               
               
               Cow position:chr28:10140345-10140513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 6

               
               
               Conread position:24-225
               
               
               Cow position:chr28:6301322-6301121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):122, 29

               
               
               Conread position:26-257
               
               
               Cow position:chr28:3137787-3137551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):113, 26

               
               
               Conread position:28-234
               
               
               Cow position:chr28:26867917-26868120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):26, 113

               
               
               Conread position:28-266
               
               
               Cow position:chr28:7557493-7557735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:28-271
               
               
               Cow position:chr28:21207142-21207374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):158, 36

               
               
               Conread position:28-348
               
               
               Cow position:chr28:2524178-2523858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):121, 63

               
               
               Conread position:29-205
               
               
               Cow position:chr28:16177484-16177314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:29-240
               
               
               Cow position:chr28:2077733-2077525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:29-318
               
               
               Cow position:chr28:10964640-10964369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):233, 23

               
               
               Conread position:29-347
               
               
               Cow position:chr28:4810006-4809706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):32, 58

               
               
               Conread position:29-378
               
               
               Cow position:chr28:26982508-26982849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):100, 24

               
               
               Conread position:29-384
               
               
               Cow position:chr28:11079533-11079188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:30-220
               
               
               Cow position:chr28:4866347-4866528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:30-274
               
               
               Cow position:chr28:1532240-1531997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):99, 104

               
               
               Conread position:30-279
               
               
               Cow position:chr28:9705890-9705638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):73, 196

               
               
               Conread position:30-384
               
               
               Cow position:chr28:10863566-10863900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):234, 62

               
               
               Conread position:31-207
               
               
               Cow position:chr28:3257227-3257046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:31-249
               
               
               Cow position:chr28:34655240-34655021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:31-373
               
               
               Cow position:chr28:2801462-2801132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 36

               
               
               Conread position:31-378
               
               
               Cow position:chr28:3011038-3011385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):116, 20

               
               
               Conread position:31-379
               
               
               Cow position:chr28:1315320-1315678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):116, 19

               
               
               Conread position:31-384
               
               
               Cow position:chr28:26328186-26327841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):202, 19

               
               
               Conread position:32-241
               
               
               Cow position:chr28:2892486-2892276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):114, 21

               
               
               Conread position:32-270
               
               
               Cow position:chr28:16879799-16879567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):232, 41

               
               
               Conread position:32-272
               
               
               Cow position:chr28:15362810-15362571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):134, 107

               
               
               Conread position:32-344
               
               
               Cow position:chr28:11348657-11348351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):88, 24

               
               
               Conread position:32-383
               
               
               Cow position:chr28:31841121-31841452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):232, 17

               
               
               Conread position:32-384
               
               
               Cow position:chr28:751462-751110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):11, 153

               
               
               Conread position:32-384
               
               
               Cow position:chr28:14998294-14997946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 37

               
               
               Conread position:32-384
               
               
               Cow position:chr28:29416497-29416831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 20

               
               
               Conread position:33-347
               
               
               Cow position:chr28:13245794-13245478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):107, 31

               
               
               Conread position:33-383
               
               
               Cow position:chr28:11866440-11866782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:249
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):133, 10

               
               
               Conread position:34-215
               
               
               Cow position:chr28:24238258-24238427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:34-233
               
               
               Cow position:chr28:29500638-29500435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):27, 194

               
               
               Conread position:34-241
               
               
               Cow position:chr28:28602981-28602776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):119, 19

               
               
               Conread position:34-272
               
               
               Cow position:chr28:10615719-10615954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):27, 58

               
               
               Conread position:34-285
               
               
               Cow position:chr28:7014683-7014432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):132, 30

               
               
               Conread position:34-302
               
               
               Cow position:chr28:8827390-8827127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 15

               
               
               Conread position:34-379
               
               
               Cow position:chr28:22813479-22813152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):9, 95

               
               
               Conread position:34-382
               
               
               Cow position:chr28:33884625-33884292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):85, 18

               
               
               Conread position:34-384
               
               
               Cow position:chr28:1632422-1632774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):27, 15

               
               
               Conread position:34-384
               
               
               Cow position:chr28:10845333-10845000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 74

               
               
               Conread position:35-254
               
               
               Cow position:chr28:7132152-7132371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):153, 18

               
               
               Conread position:35-381
               
               
               Cow position:chr28:25129118-25128768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 117

               
               
               Conread position:36-378
               
               
               Cow position:chr28:8359134-8358793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 146

               
               
               Conread position:37-272
               
               
               Cow position:chr28:5630325-5630090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):109, 27

               
               
               Conread position:37-280
               
               
               Cow position:chr28:12991362-12991120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):203, 90

               
               
               Conread position:37-314
               
               
               Cow position:chr28:34843339-34843623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 116

               
               
               Conread position:37-379
               
               
               Cow position:chr28:9426126-9426463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):219, 16

               
               
               Conread position:37-382
               
               
               Cow position:chr28:4834617-4834958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 20

               
               
               Conread position:37-384
               
               
               Cow position:chr28:5193554-5193201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:250
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):13, 62

               
               
               Conread position:37-384
               
               
               Cow position:chr28:9100154-9099817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:234
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):115, 27

               
               
               Conread position:38-241
               
               
               Cow position:chr28:3678585-3678386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:38-345
               
               
               Cow position:chr28:28765677-28765984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:38-378
               
               
               Cow position:chr28:10057363-10057701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:38-379
               
               
               Cow position:chr28:5577758-5577412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 64

               
               
               Conread position:38-384
               
               
               Cow position:chr28:3449534-3449181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):137, 26

               
               
               Conread position:38-386
               
               
               Cow position:chr28:28631979-28631611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 152

               
               
               Conread position:39-257
               
               
               Cow position:chr28:12974107-12973889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):105, 14

               
               
               Conread position:39-270
               
               
               Cow position:chr28:21008446-21008671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):225, 54

               
               
               Conread position:39-272
               
               
               Cow position:chr28:6563671-6563906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):115, 14

               
               
               Conread position:39-274
               
               
               Cow position:chr28:13133858-13133622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:39-334
               
               
               Cow position:chr28:7805195-7805492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 65

               
               
               Conread position:39-384
               
               
               Cow position:chr28:5818062-5817724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):153, 25

               
               
               Conread position:40-378
               
               
               Cow position:chr28:23410108-23410437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):26, 84

               
               
               Conread position:40-384
               
               
               Cow position:chr28:4016742-4016420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 11

               
               
               Conread position:40-384
               
               
               Cow position:chr28:6091582-6091245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):16, 83

               
               
               Conread position:41-212
               
               
               Cow position:chr28:8384097-8383914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:42-384
               
               
               Cow position:chr28:5236373-5236717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):96, 151

               
               
               Conread position:45-283
               
               
               Cow position:chr28:5232161-5231919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 119

               
               
               Conread position:45-342
               
               
               Cow position:chr28:3741086-3740804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):219, 20

               
               
               Conread position:45-348
               
               
               Cow position:chr28:1099458-1099742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):252, 82

               
               
               Conread position:45-384
               
               
               Cow position:chr28:7008761-7009093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):14, 84

               
               
               Conread position:46-378
               
               
               Cow position:chr28:23460361-23460039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):98, 24

               
               
               Conread position:46-384
               
               
               Cow position:chr28:14720567-14720895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:46-384
               
               
               Cow position:chr28:16204112-16204447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 241

               
               
               Conread position:47-310
               
               
               Cow position:chr28:11987382-11987126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 46

               
               
               Conread position:47-310
               
               
               Cow position:chr28:12055620-12055364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 46

               
               
               Conread position:47-339
               
               
               Cow position:chr28:3410772-3411066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):147, 96

               
               
               Conread position:47-384
               
               
               Cow position:chr28:5074303-5074628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):19, 122

               
               
               Conread position:47-413
               
               
               Cow position:chr28:11346272-11346630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:250
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):212, 95

               
               
               Conread position:48-217
               
               
               Cow position:chr28:27787779-27787614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:48-228
               
               
               Cow position:chr28:26960697-26960872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:48-257
               
               
               Cow position:chr28:9109427-9109224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:48-309
               
               
               Cow position:chr28:28561113-28560852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):120, 16

               
               
               Conread position:48-368
               
               
               Cow position:chr28:11307303-11307610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:48-368
               
               
               Cow position:chr28:16416859-16416543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:48-384
               
               
               Cow position:chr28:16918958-16919278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 84

               
               
               Conread position:48-404
               
               
               Cow position:chr28:5684917-5684574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 98

               
               
               Conread position:49-236
               
               
               Cow position:chr28:17943939-17943759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:49-249
               
               
               Cow position:chr28:26530653-26530850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:49-271
               
               
               Cow position:chr28:17948902-17949120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):215, 79

               
               
               Conread position:49-273
               
               
               Cow position:chr28:8396540-8396326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):215, 31

               
               
               Conread position:49-376
               
               
               Cow position:chr28:34247826-34248133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:49-381
               
               
               Cow position:chr28:11527044-11527374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 78

               
               
               Conread position:49-384
               
               
               Cow position:chr28:5436871-5437206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 142

               
               
               Conread position:49-384
               
               
               Cow position:chr28:21845166-21844841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 42

               
               
               Conread position:49-442
               
               
               Cow position:chr28:10588818-10589195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 78

               
               
               Conread position:50-241
               
               
               Cow position:chr28:13370925-13371123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:50-244
               
               
               Cow position:chr28:10959013-10958823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):116, 91

               
               
               Conread position:50-247
               
               
               Cow position:chr28:1654876-1655076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 137

               
               
               Conread position:50-249
               
               
               Cow position:chr28:7644960-7644756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):23, 129

               
               
               Conread position:50-251
               
               
               Cow position:chr28:7964465-7964663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:50-252
               
               
               Cow position:chr28:659073-659282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):75, 142

               
               
               Conread position:50-254
               
               
               Cow position:chr28:5674086-5673886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:50-257
               
               
               Cow position:chr28:16362325-16362526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:50-260
               
               
               Cow position:chr28:3759211-3758997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):83, 194

               
               
               Conread position:50-271
               
               
               Cow position:chr28:19217027-19216815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):16, 72

               
               
               Conread position:50-274
               
               
               Cow position:chr28:11743613-11743829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 56

               
               
               Conread position:50-274
               
               
               Cow position:chr28:13048065-13048293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 129

               
               
               Conread position:50-299
               
               
               Cow position:chr28:11816469-11816702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:50-368
               
               
               Cow position:chr28:4881035-4881339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):215, 35

               
               
               Conread position:50-376
               
               
               Cow position:chr28:19564019-19564338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 93

               
               
               Conread position:50-377
               
               
               Cow position:chr28:5200040-5199711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:50-378
               
               
               Cow position:chr28:4643556-4643876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):107, 72

               
               
               Conread position:50-378
               
               
               Cow position:chr28:23447621-23447936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:50-381
               
               
               Cow position:chr28:10606424-10606743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):115, 57

               
               
               Conread position:50-383
               
               
               Cow position:chr28:1838211-1837876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):11, 170

               
               
               Conread position:50-383
               
               
               Cow position:chr28:23296532-23296206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):114, 15

               
               
               Conread position:50-384
               
               
               Cow position:chr28:4071172-4070851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 36

               
               
               Conread position:50-384
               
               
               Cow position:chr28:4159178-4158840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 234

               
               
               Conread position:50-384
               
               
               Cow position:chr28:4884039-4884381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 95

               
               
               Conread position:50-384
               
               
               Cow position:chr28:8140699-8140364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 46

               
               
               Conread position:50-384
               
               
               Cow position:chr28:11584994-11585323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 89

               
               
               Conread position:50-384
               
               
               Cow position:chr28:11828745-11829056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 178

               
               
               Conread position:50-384
               
               
               Cow position:chr28:12598550-12598231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):114, 76

               
               
               Conread position:50-384
               
               
               Cow position:chr28:12964797-12964451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):16, 143

               
               
               Conread position:50-385
               
               
               Cow position:chr28:23531077-23530749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):214, 41

               
               
               Conread position:50-395
               
               
               Cow position:chr28:3484800-3484449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):74, 103

               
               
               Conread position:51-235
               
               
               Cow position:chr28:21744926-21744745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 77

               
               
               Conread position:51-331
               
               
               Cow position:chr28:4823815-4823541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 45

               
               
               Conread position:51-365
               
               
               Cow position:chr28:10053120-10053432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):190, 6

               
               
               Conread position:51-384
               
               
               Cow position:chr28:11884318-11884638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 35

               
               
               Conread position:51-384
               
               
               Cow position:chr28:22346236-22345901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 41

               
               
               Conread position:52-209
               
               
               Cow position:chr28:7750809-7750960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:52-249
               
               
               Cow position:chr28:2777742-2777546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:52-249
               
               
               Cow position:chr28:11398581-11398781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:52-249
               
               
               Cow position:chr28:11411327-11411517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):112, 69

               
               
               Conread position:52-272
               
               
               Cow position:chr28:19038804-19039027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):14, 101

               
               
               Conread position:52-292
               
               
               Cow position:chr28:8304454-8304221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):191, 77

               
               
               Conread position:52-303
               
               
               Cow position:chr28:2279390-2279626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):212, 68

               
               
               Conread position:52-328
               
               
               Cow position:chr28:3445267-3445545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 100

               
               
               Conread position:52-378
               
               
               Cow position:chr28:18625449-18625117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):104, 131

               
               
               Conread position:52-383
               
               
               Cow position:chr28:30937471-30937780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 34

               
               
               Conread position:52-384
               
               
               Cow position:chr28:20124992-20124665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 12

               
               
               Conread position:53-230
               
               
               Cow position:chr28:8681226-8681395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:53-270
               
               
               Cow position:chr28:26826435-26826217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):23, 120

               
               
               Conread position:53-274
               
               
               Cow position:chr28:4006994-4006776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):9, 76

               
               
               Conread position:53-282
               
               
               Cow position:chr28:4101724-4101502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 61

               
               
               Conread position:53-314
               
               
               Cow position:chr28:3725997-3726262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 92

               
               
               Conread position:53-327
               
               
               Cow position:chr28:12088435-12088708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 86

               
               
               Conread position:53-351
               
               
               Cow position:chr28:777887-777580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 98

               
               
               Conread position:53-352
               
               
               Cow position:chr28:3143673-3143972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):12, 75

               
               
               Conread position:53-368
               
               
               Cow position:chr28:7371898-7372224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 53

               
               
               Conread position:53-381
               
               
               Cow position:chr28:4089850-4090163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):214, 18

               
               
               Conread position:53-383
               
               
               Cow position:chr28:25727580-25727260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):8, 34

               
               
               Conread position:53-384
               
               
               Cow position:chr28:3078485-3078799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):111, 58

               
               
               Conread position:53-384
               
               
               Cow position:chr28:4440509-4440185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):87, 11

               
               
               Conread position:53-384
               
               
               Cow position:chr28:8787750-8787421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 92

               
               
               Conread position:53-384
               
               
               Cow position:chr28:16085530-16085205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 59

               
               
               Conread position:53-384
               
               
               Cow position:chr28:27218535-27218206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):96, 12

               
               
               Conread position:53-390
               
               
               Cow position:chr28:9740669-9740341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):44, 71

               
               
               Conread position:53-394
               
               
               Cow position:chr28:11422608-11422947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 39

               
               
               Conread position:54-240
               
               
               Cow position:chr28:8936358-8936175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:54-274
               
               
               Cow position:chr28:20174049-20173826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):7, 105

               
               
               Conread position:54-333
               
               
               Cow position:chr28:4013293-4013019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 98

               
               
               Conread position:54-352
               
               
               Cow position:chr28:4182211-4181917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 65

               
               
               Conread position:54-366
               
               
               Cow position:chr28:34877762-34878070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 171

               
               
               Conread position:54-384
               
               
               Cow position:chr28:16369879-16370194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 56

               
               
               Conread position:55-245
               
               
               Cow position:chr28:2151230-2151420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:55-384
               
               
               Cow position:chr28:12951626-12951310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):9, 91

               
               
               Conread position:55-384
               
               
               Cow position:chr28:26719540-26719232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):5, 72

               
               
               Conread position:55-386
               
               
               Cow position:chr28:3492577-3492905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 72

               
               
               Conread position:56-230
               
               
               Cow position:chr28:11305427-11305598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:56-384
               
               
               Cow position:chr28:13527406-13527085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):93, 30

               
               
               Conread position:57-250
               
               
               Cow position:chr28:10203319-10203134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:57-253
               
               
               Cow position:chr28:17680832-17680634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:57-263
               
               
               Cow position:chr28:28501449-28501235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 179

               
               
               Conread position:57-274
               
               
               Cow position:chr28:8259839-8259618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):92, 131

               
               
               Conread position:57-290
               
               
               Cow position:chr28:7131884-7132112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):150, 84

               
               
               Conread position:57-296
               
               
               Cow position:chr28:5255078-5254845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 82

               
               
               Conread position:57-328
               
               
               Cow position:chr28:7618953-7619215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):207, 48

               
               
               Conread position:57-382
               
               
               Cow position:chr28:25057163-25056854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 35

               
               
               Conread position:57-383
               
               
               Cow position:chr28:5204392-5204075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 35

               
               
               Conread position:57-383
               
               
               Cow position:chr28:20409598-20409275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):87, 71

               
               
               Conread position:57-384
               
               
               Cow position:chr28:5273220-5273556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 121

               
               
               Conread position:57-384
               
               
               Cow position:chr28:11426341-11426660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 71

               
               
               Conread position:57-384
               
               
               Cow position:chr28:13474506-13474182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 90

               
               
               Conread position:57-384
               
               
               Cow position:chr28:30746531-30746846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):114, 50

               
               
               Conread position:57-406
               
               
               Cow position:chr28:662307-661972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):123, 63

               
               
               Conread position:58-213
               
               
               Cow position:chr28:4588520-4588370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:58-241
               
               
               Cow position:chr28:22085340-22085518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 12

               
               
               Conread position:58-244
               
               
               Cow position:chr28:5609712-5609896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):107, 87

               
               
               Conread position:58-272
               
               
               Cow position:chr28:5236080-5235873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):206, 87

               
               
               Conread position:58-275
               
               
               Cow position:chr28:4364617-4364833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):18, 36

               
               
               Conread position:58-325
               
               
               Cow position:chr28:20759487-20759761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):77, 146

               
               
               Conread position:58-332
               
               
               Cow position:chr28:17012099-17012358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):206, 33

               
               
               Conread position:58-332
               
               
               Cow position:chr28:19361945-19361673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):96, 128

               
               
               Conread position:58-377
               
               
               Cow position:chr28:11762904-11762586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):91, 116

               
               
               Conread position:58-384
               
               
               Cow position:chr28:30326895-30327209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):208, 70

               
               
               Conread position:59-247
               
               
               Cow position:chr28:10196665-10196847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 62

               
               
               Conread position:59-262
               
               
               Cow position:chr28:24996413-24996610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:59-268
               
               
               Cow position:chr28:30902326-30902122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):205, 81

               
               
               Conread position:59-272
               
               
               Cow position:chr28:32358309-32358100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):205, 74

               
               
               Conread position:59-383
               
               
               Cow position:chr28:21103615-21103952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):77, 118

               
               
               Conread position:59-384
               
               
               Cow position:chr28:4282284-4282608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):90, 122

               
               
               Conread position:59-384
               
               
               Cow position:chr28:25973747-25973415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):88, 128

               
               
               Conread position:59-384
               
               
               Cow position:chr28:34230436-34230112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):87, 136

               
               
               Conread position:60-214
               
               
               Cow position:chr28:4077133-4077295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:60-265
               
               
               Cow position:chr28:4876642-4876443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:60-273
               
               
               Cow position:chr28:5805866-5805662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):132, 31

               
               
               Conread position:60-274
               
               
               Cow position:chr28:26810885-26810669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):89, 66

               
               
               Conread position:60-279
               
               
               Cow position:chr28:29850618-29850830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):39, 31

               
               
               Conread position:60-282
               
               
               Cow position:chr28:11016608-11016390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):159, 80

               
               
               Conread position:60-304
               
               
               Cow position:chr28:17740029-17739785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):84, 177

               
               
               Conread position:60-321
               
               
               Cow position:chr28:6934972-6935238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 130

               
               
               Conread position:60-347
               
               
               Cow position:chr28:5138795-5139078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 67

               
               
               Conread position:60-364
               
               
               Cow position:chr28:11197468-11197771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:60-368
               
               
               Cow position:chr28:21502586-21502293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):199, 35

               
               
               Conread position:60-384
               
               
               Cow position:chr28:9636253-9636571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:60-384
               
               
               Cow position:chr28:21868661-21868337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 91

               
               
               Conread position:60-384
               
               
               Cow position:chr28:23616609-23616289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):199, 88

               
               
               Conread position:61-262
               
               
               Cow position:chr28:16856903-16857104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):104, 124

               
               
               Conread position:61-303
               
               
               Cow position:chr28:4186106-4185867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):221, 81

               
               
               Conread position:61-382
               
               
               Cow position:chr28:3746400-3746089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):185, 81

               
               
               Conread position:61-382
               
               
               Cow position:chr28:12672258-12672577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 127

               
               
               Conread position:61-384
               
               
               Cow position:chr28:12430808-12430489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 12

               
               
               Conread position:61-384
               
               
               Cow position:chr28:23007539-23007852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):201, 66

               
               
               Conread position:62-262
               
               
               Cow position:chr28:19994744-19994943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):82, 126

               
               
               Conread position:62-272
               
               
               Cow position:chr28:18797512-18797312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):202, 60

               
               
               Conread position:62-273
               
               
               Cow position:chr28:24646785-24646584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):200, 24

               
               
               Conread position:62-384
               
               
               Cow position:chr28:3023714-3024030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 80

               
               
               Conread position:62-384
               
               
               Cow position:chr28:9285175-9285492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 71

               
               
               Conread position:62-384
               
               
               Cow position:chr28:24672470-24672146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:62-384
               
               
               Cow position:chr28:33163274-33163582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):202, 66

               
               
               Conread position:62-384
               
               
               Cow position:chr28:34430221-34430541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):87, 115

               
               
               Conread position:63-258
               
               
               Cow position:chr28:10890541-10890728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:63-289
               
               
               Cow position:chr28:6975435-6975216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):201, 63

               
               
               Conread position:64-255
               
               
               Cow position:chr28:20968376-20968570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):80, 100

               
               
               Conread position:64-378
               
               
               Cow position:chr28:25806797-25806460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):68, 242

               
               
               Conread position:64-384
               
               
               Cow position:chr28:22308844-22308530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):85, 114

               
               
               Conread position:64-384
               
               
               Cow position:chr28:24082470-24082149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 89

               
               
               Conread position:65-384
               
               
               Cow position:chr28:7267750-7268054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):199, 76

               
               
               Conread position:65-384
               
               
               Cow position:chr28:34134052-34133744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):197, 14

               
               
               Conread position:68-220
               
               
               Cow position:chr28:4166771-4166619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):86, 23

               
               
               Conread position:69-373
               
               
               Cow position:chr28:12362965-12363268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):46, 89

               
               
               Conread position:71-275
               
               
               Cow position:chr28:5711818-5712012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:72-265
               
               
               Cow position:chr28:4877240-4877431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):82, 26

               
               
               Conread position:72-289
               
               
               Cow position:chr28:26531089-26531300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):66, 19

               
               
               Conread position:72-290
               
               
               Cow position:chr28:27721888-27721676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):210, 76

               
               
               Conread position:72-330
               
               
               Cow position:chr28:9684145-9684398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):192, 57

               
               
               Conread position:72-348
               
               
               Cow position:chr28:4046036-4045770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:72-367
               
               
               Cow position:chr28:17071532-17071232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):75, 104

               
               
               Conread position:72-379
               
               
               Cow position:chr28:12933544-12933844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):174, 20

               
               
               Conread position:72-381
               
               
               Cow position:chr28:3914897-3914596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 50

               
               
               Conread position:72-384
               
               
               Cow position:chr28:4913900-4914216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):130, 86

               
               
               Conread position:72-384
               
               
               Cow position:chr28:16346346-16346645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 14

               
               
               Conread position:72-384
               
               
               Cow position:chr28:21363932-21363628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):75, 19

               
               
               Conread position:73-361
               
               
               Cow position:chr28:26743822-26743528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):61, 224

               
               
               Conread position:74-214
               
               
               Cow position:chr28:4100574-4100708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:74-325
               
               
               Cow position:chr28:20397176-20397430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 212

               
               
               Conread position:75-384
               
               
               Cow position:chr28:22323448-22323149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 73

               
               
               Conread position:76-290
               
               
               Cow position:chr28:3200650-3200433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):70, 111

               
               
               Conread position:79-366
               
               
               Cow position:chr28:34442571-34442856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):75, 96

               
               
               Conread position:79-382
               
               
               Cow position:chr28:7512396-7512704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):73, 97

               
               
               Conread position:79-384
               
               
               Cow position:chr28:657280-657567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):186, 49

               
               
               Conread position:80-368
               
               
               Cow position:chr28:10745399-10745110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):76, 94

               
               
               Conread position:83-348
               
               
               Cow position:chr28:30237933-30238189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 73

               
               
               Conread position:83-368
               
               
               Cow position:chr28:26055659-26055373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):176, 58

               
               
               Conread position:83-378
               
               
               Cow position:chr28:4138486-4138783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):64, 96

               
               
               Conread position:88-267
               
               
               Cow position:chr28:27429202-27429028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):175, 34

               
               
               Conread position:94-369
               
               
               Cow position:chr28:3408052-3408311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):170, 34

               
               
               Conread position:95-348
               
               
               Cow position:chr28:7927338-7927092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):170, 44

               
               
               Conread position:95-384
               
               
               Cow position:chr28:26103867-26103592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):154, 46

               
               
               Conread position:97-384
               
               
               Cow position:chr28:11686851-11687147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):44, 110

               
               
               Conread position:101-378
               
               
               Cow position:chr28:4355709-4355443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):181, 8

               
               
               Conread position:102-256
               
               
               Cow position:chr28:10212266-10212418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:105-373
               
               
               Cow position:chr28:26533705-26533442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):48, 71

               
               
               Conread position:116-383
               
               
               Cow position:chr28:25728342-25728081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):148, 37

               
               
               Conread position:128-378
               
               
               Cow position:chr28:12619712-12619454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):27, 60

               
               
               Conread position:128-384
               
               
               Cow position:chr28:28164220-28163968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):143, 25

               
               
               Conread position:129-347
               
               
               Cow position:chr28:12070365-12070154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):163, 27

               
               
               Conread position:129-358
               
               
               Cow position:chr28:7388636-7388860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):135, 89

               
               
               Conread position:129-378
               
               
               Cow position:chr28:2899123-2898886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:129-378
               
               
               Cow position:chr28:20313413-20313163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):135, 164

               
               
               Conread position:129-383
               
               
               Cow position:chr28:6971212-6971461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):135, 219

               
               
               Conread position:129-392
               
               
               Cow position:chr28:32174763-32174503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):111, 27

               
               
               Conread position:129-394
               
               
               Cow position:chr28:19222014-19222278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):25, 170

               
               
               Conread position:130-383
               
               
               Cow position:chr28:13865975-13865725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):26, 60

               
               
               Conread position:130-384
               
               
               Cow position:chr28:11752008-11752259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):134, 15

               
               
               Conread position:131-303
               
               
               Cow position:chr28:7498013-7498186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:131-377
               
               
               Cow position:chr28:2752360-2752605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):128, 152

               
               
               Conread position:131-378
               
               
               Cow position:chr28:27161195-27161440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):133, 15

               
               
               Conread position:131-383
               
               
               Cow position:chr28:26220392-26220138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):18, 75

               
               
               Conread position:131-384
               
               
               Cow position:chr28:2131790-2132039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:191
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):133, 155

               
               
               Conread position:131-384
               
               
               Cow position:chr28:14649479-14649230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 75

               
               
               Conread position:131-384
               
               
               Cow position:chr28:19025871-19026130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:131-384
               
               
               Cow position:chr28:19079709-19079963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 64

               
               
               Conread position:131-384
               
               
               Cow position:chr28:21355363-21355106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:131-384
               
               
               Cow position:chr28:25249486-25249236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:131-384
               
               
               Cow position:chr28:31109869-31110124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):28, 58

               
               
               Conread position:132-272
               
               
               Cow position:chr28:8149501-8149640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:132-381
               
               
               Cow position:chr28:2960696-2960947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):15, 164

               
               
               Conread position:132-384
               
               
               Cow position:chr28:33052169-33051910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):103, 29

               
               
               Conread position:133-352
               
               
               Cow position:chr28:25677209-25677433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:133-384
               
               
               Cow position:chr28:2873048-2872799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):131, 17

               
               
               Conread position:134-358
               
               
               Cow position:chr28:30865548-30865327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):132, 81

               
               
               Conread position:134-384
               
               
               Cow position:chr28:10172286-10172528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):130, 69

               
               
               Conread position:134-384
               
               
               Cow position:chr28:25596761-25596514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):20, 90

               
               
               Conread position:140-373
               
               
               Cow position:chr28:13608022-13607778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:146-320
               
               
               Cow position:chr28:4438831-4438655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):34, 152

               
               
               Conread position:146-397
               
               
               Cow position:chr28:6059351-6059598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):118, 139

               
               
               Conread position:147-286
               
               
               Cow position:chr28:3147597-3147459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):117, 74

               
               
               Conread position:147-372
               
               
               Cow position:chr28:16245947-16246169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):113, 75

               
               
               Conread position:147-384
               
               
               Cow position:chr28:7865447-7865206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:148-383
               
               
               Cow position:chr28:18354210-18354441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 80

               
               
               Conread position:148-384
               
               
               Cow position:chr28:21598133-21598372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):19, 148

               
               
               Conread position:151-270
               
               
               Cow position:chr28:25675391-25675511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:151-380
               
               
               Cow position:chr28:4188668-4188416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):89, 237

               
               
               Conread position:151-384
               
               
               Cow position:chr28:2862982-2862747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:152-316
               
               
               Cow position:chr28:2762308-2762143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):112, 129

               
               
               Conread position:152-380
               
               
               Cow position:chr28:4841277-4841506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 179

               
               
               Conread position:152-384
               
               
               Cow position:chr28:18591383-18591155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):112, 70

               
               
               Conread position:152-384
               
               
               Cow position:chr28:26614986-26614766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):112, 125

               
               
               Conread position:152-385
               
               
               Cow position:chr28:3169076-3169314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):119, 101

               
               
               Conread position:153-337
               
               
               Cow position:chr28:4179663-4179482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):111, 81

               
               
               Conread position:153-384
               
               
               Cow position:chr28:12892325-12892552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):183, 90

               
               
               Conread position:153-384
               
               
               Cow position:chr28:32365955-32365728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):111, 8

               
               
               Conread position:153-385
               
               
               Cow position:chr28:15043750-15043981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):111, 66

               
               
               Conread position:154-384
               
               
               Cow position:chr28:8021992-8022227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):110, 57

               
               
               Conread position:155-383
               
               
               Cow position:chr28:14512643-14512405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 231

               
               
               Conread position:155-384
               
               
               Cow position:chr28:5128618-5128844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):36, 140

               
               
               Conread position:161-378
               
               
               Cow position:chr28:26922264-26922479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):103, 127

               
               
               Conread position:161-379
               
               
               Cow position:chr28:24018088-24017884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):193, 93

               
               
               Conread position:161-384
               
               
               Cow position:chr28:11786613-11786831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 132

               
               
               Conread position:162-383
               
               
               Cow position:chr28:23676241-23676023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):102, 123

               
               
               Conread position:165-384
               
               
               Cow position:chr28:18186656-18186436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):139, 107

               
               
               Conread position:172-384
               
               
               Cow position:chr28:8408827-8408616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):92, 117

               
               
               Conread position:174-384
               
               
               Cow position:chr28:13267881-13267667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):6, 49

               
               
               Conread position:181-384
               
               
               Cow position:chr28:21380966-21380760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):5, 105

               
               
               Conread position:182-384
               
               
               Cow position:chr28:4536542-4536338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):49, 106

               
               
               Conread position:190-384
               
               
               Cow position:chr28:10533860-10534050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):115, 70

               
               
               Conread position:195-378
               
               
               Cow position:chr28:12947019-12946836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 66

               
               
               Conread position:196-385
               
               
               Cow position:chr28:7548989-7549179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):68, 96

               
               
               Conread position:199-384
               
               
               Cow position:chr28:4588163-4587981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):66, 21

               
               
               Conread position:203-384
               
               
               Cow position:chr28:7751239-7751415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):63, 24

               
               
               Conread position:204-384
               
               
               Cow position:chr28:2737745-2737926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):60, 80

               
               
               Conread position:205-383
               
               
               Cow position:chr28:3256858-3256680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):63, 77

               
               
               Conread position:217-384
               
               
               Cow position:chr28:5904780-5904614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:236-384
               
               
               Cow position:chr28:7607947-7608098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 49

               
               
               Conread position:1-235
               
               
               Cow position:chr29:16735488-16735247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):20, 191

               
               
               Conread position:1-267
               
               
               Cow position:chr29:22729829-22729558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):38, 156

               
               
               Conread position:1-346
               
               
               Cow position:chr29:3237093-3237442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 21

               
               
               Conread position:1-384
               
               
               Cow position:chr29:11397662-11398048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:260
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):56, 25

               
               
               Conread position:1-384
               
               
               Cow position:chr29:21706146-21706515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):122, 26

               
               
               Conread position:3-352
               
               
               Cow position:chr29:3549869-3549520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):22, 178

               
               
               Conread position:5-328
               
               
               Cow position:chr29:16290977-16290655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):31, 110

               
               
               Conread position:6-343
               
               
               Cow position:chr29:25814586-25814922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):148, 24

               
               
               Conread position:7-368
               
               
               Cow position:chr29:15738097-15738447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):18, 107

               
               
               Conread position:8-274
               
               
               Cow position:chr29:38754688-38754956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:8-383
               
               
               Cow position:chr29:35458512-35458899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):16, 224

               
               
               Conread position:12-271
               
               
               Cow position:chr29:8163581-8163841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 12

               
               
               Conread position:14-338
               
               
               Cow position:chr29:36249282-36248956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):15, 51

               
               
               Conread position:19-376
               
               
               Cow position:chr29:1933330-1933671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:20-271
               
               
               Cow position:chr29:27524599-27524849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):126, 23

               
               
               Conread position:21-220
               
               
               Cow position:chr29:22018948-22019149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 9

               
               
               Conread position:22-244
               
               
               Cow position:chr29:14747008-14746794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):144, 25

               
               
               Conread position:23-252
               
               
               Cow position:chr29:17436983-17436757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 83

               
               
               Conread position:23-384
               
               
               Cow position:chr29:38581230-38580852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):30, 215

               
               
               Conread position:25-373
               
               
               Cow position:chr29:20673577-20673913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):112, 28

               
               
               Conread position:26-248
               
               
               Cow position:chr29:40350850-40351065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:26-383
               
               
               Cow position:chr29:18878251-18878620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):121, 30

               
               
               Conread position:26-384
               
               
               Cow position:chr29:27652413-27652757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):189, 22

               
               
               Conread position:26-384
               
               
               Cow position:chr29:35677306-35677675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):28, 160

               
               
               Conread position:26-394
               
               
               Cow position:chr29:19949532-19949170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 25

               
               
               Conread position:27-265
               
               
               Cow position:chr29:19125561-19125315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):23, 30

               
               
               Conread position:28-272
               
               
               Cow position:chr29:9310834-9310585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):14, 128

               
               
               Conread position:28-352
               
               
               Cow position:chr29:23845068-23844742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):118, 25

               
               
               Conread position:28-384
               
               
               Cow position:chr29:16272970-16272600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):116, 22

               
               
               Conread position:29-215
               
               
               Cow position:chr29:40112605-40112425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:29-273
               
               
               Cow position:chr29:33511498-33511745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):106, 123

               
               
               Conread position:29-317
               
               
               Cow position:chr29:42630344-42630063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):163, 24

               
               
               Conread position:29-384
               
               
               Cow position:chr29:21932892-21933240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):49, 55

               
               
               Conread position:30-194
               
               
               Cow position:chr29:38010669-38010509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:30-237
               
               
               Cow position:chr29:17282294-17282089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):25, 67

               
               
               Conread position:30-367
               
               
               Cow position:chr29:5830791-5831144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):107, 23

               
               
               Conread position:30-378
               
               
               Cow position:chr29:20910464-20910813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):124, 23

               
               
               Conread position:31-241
               
               
               Cow position:chr29:21018519-21018729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):97, 22

               
               
               Conread position:31-373
               
               
               Cow position:chr29:4121081-4120734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):118, 12

               
               
               Conread position:31-384
               
               
               Cow position:chr29:11667172-11666836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:31-384
               
               
               Cow position:chr29:17297369-17297006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 150

               
               
               Conread position:31-384
               
               
               Cow position:chr29:37618535-37618181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):113, 159

               
               
               Conread position:33-232
               
               
               Cow position:chr29:42646274-42646076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):144, 112

               
               
               Conread position:33-232
               
               
               Cow position:chr29:42798180-42797982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):144, 112

               
               
               Conread position:33-241
               
               
               Cow position:chr29:34274147-34274359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 195

               
               
               Conread position:33-373
               
               
               Cow position:chr29:29188871-29189204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):33, 42

               
               
               Conread position:33-384
               
               
               Cow position:chr29:1022518-1022168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):231, 31

               
               
               Conread position:34-220
               
               
               Cow position:chr29:2219610-2219425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:34-302
               
               
               Cow position:chr29:28478554-28478283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:34-378
               
               
               Cow position:chr29:23874684-23874343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:34-379
               
               
               Cow position:chr29:30227061-30227393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):120, 20

               
               
               Conread position:35-261
               
               
               Cow position:chr29:43088531-43088308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):31, 119

               
               
               Conread position:35-301
               
               
               Cow position:chr29:5568713-5568445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):127, 18

               
               
               Conread position:35-303
               
               
               Cow position:chr29:44991207-44991469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:35-330
               
               
               Cow position:chr29:25874247-25874538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):98, 29

               
               
               Conread position:35-384
               
               
               Cow position:chr29:22777960-22778303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):136, 20

               
               
               Conread position:36-268
               
               
               Cow position:chr29:19363928-19363701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:36-384
               
               
               Cow position:chr29:25092332-25091987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 114

               
               
               Conread position:36-384
               
               
               Cow position:chr29:29769132-29769476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:37-368
               
               
               Cow position:chr29:41531074-41530738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 153

               
               
               Conread position:37-383
               
               
               Cow position:chr29:35084007-35084347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):222, 17

               
               
               Conread position:37-384
               
               
               Cow position:chr29:26259697-26259351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:38-254
               
               
               Cow position:chr29:25288700-25288919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):89, 35

               
               
               Conread position:38-270
               
               
               Cow position:chr29:36781092-36781317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):226, 14

               
               
               Conread position:38-384
               
               
               Cow position:chr29:17222636-17222287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):116, 74

               
               
               Conread position:38-384
               
               
               Cow position:chr29:31674850-31674505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 26

               
               
               Conread position:39-252
               
               
               Cow position:chr29:25432675-25432457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):33, 66

               
               
               Conread position:39-282
               
               
               Cow position:chr29:30827628-30827381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):25, 134

               
               
               Conread position:39-302
               
               
               Cow position:chr29:23824992-23825256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 114

               
               
               Conread position:39-384
               
               
               Cow position:chr29:465177-465522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:39-388
               
               
               Cow position:chr29:29057392-29057052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):115, 25

               
               
               Conread position:40-329
               
               
               Cow position:chr29:4492648-4492370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):265, 13

               
               
               Conread position:41-366
               
               
               Cow position:chr29:26477760-26477432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):110, 16

               
               
               Conread position:41-384
               
               
               Cow position:chr29:12025260-12025596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):24, 53

               
               
               Conread position:41-384
               
               
               Cow position:chr29:36220758-36220402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):65, 11

               
               
               Conread position:42-229
               
               
               Cow position:chr29:24605114-24604925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):18, 147

               
               
               Conread position:43-282
               
               
               Cow position:chr29:4423235-4423464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):221, 84

               
               
               Conread position:43-384
               
               
               Cow position:chr29:28805969-28805635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):145, 10

               
               
               Conread position:45-247
               
               
               Cow position:chr29:26602411-26602210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 18

               
               
               Conread position:45-321
               
               
               Cow position:chr29:501413-501137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:45-326
               
               
               Cow position:chr29:20167636-20167355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):104, 50

               
               
               Conread position:46-345
               
               
               Cow position:chr29:32894467-32894182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):218, 7

               
               
               Conread position:46-367
               
               
               Cow position:chr29:26017287-26017610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):20, 133

               
               
               Conread position:46-384
               
               
               Cow position:chr29:2744057-2744397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):218, 113

               
               
               Conread position:47-272
               
               
               Cow position:chr29:31982032-31981816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):212, 23

               
               
               Conread position:47-378
               
               
               Cow position:chr29:10018778-10018458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):140, 17

               
               
               Conread position:48-252
               
               
               Cow position:chr29:26211261-26211058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 5

               
               
               Conread position:48-331
               
               
               Cow position:chr29:32656645-32656359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:48-366
               
               
               Cow position:chr29:28674493-28674814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:48-384
               
               
               Cow position:chr29:22613632-22613301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:49-255
               
               
               Cow position:chr29:19420412-19420610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):117, 16

               
               
               Conread position:49-348
               
               
               Cow position:chr29:21666294-21665998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 7

               
               
               Conread position:49-415
               
               
               Cow position:chr29:7624374-7624026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 42

               
               
               Conread position:50-220
               
               
               Cow position:chr29:7414703-7414539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 36

               
               
               Conread position:50-220
               
               
               Cow position:chr29:24660887-24660723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 87

               
               
               Conread position:50-224
               
               
               Cow position:chr29:6774701-6774867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:50-235
               
               
               Cow position:chr29:8798804-8798992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 21

               
               
               Conread position:50-238
               
               
               Cow position:chr29:22735239-22735428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 136

               
               
               Conread position:50-252
               
               
               Cow position:chr29:32215913-32215713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):11, 65

               
               
               Conread position:50-255
               
               
               Cow position:chr29:14577065-14576862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:50-302
               
               
               Cow position:chr29:31651610-31651365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):165, 77

               
               
               Conread position:50-315
               
               
               Cow position:chr29:22166878-22167138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):11, 74

               
               
               Conread position:50-321
               
               
               Cow position:chr29:38396572-38396301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):94, 45

               
               
               Conread position:50-324
               
               
               Cow position:chr29:17462570-17462851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 94

               
               
               Conread position:50-328
               
               
               Cow position:chr29:26275809-26275537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):102, 77

               
               
               Conread position:50-332
               
               
               Cow position:chr29:38347817-38348104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):24, 130

               
               
               Conread position:50-332
               
               
               Cow position:chr29:41112681-41112948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):11, 58

               
               
               Conread position:50-344
               
               
               Cow position:chr29:20770553-20770258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:50-348
               
               
               Cow position:chr29:20925116-20924814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:50-368
               
               
               Cow position:chr29:1008027-1007707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):26, 14

               
               
               Conread position:50-369
               
               
               Cow position:chr29:1615135-1614815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:218
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):246, 96

               
               
               Conread position:50-383
               
               
               Cow position:chr29:24624449-24624126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):216, 44

               
               
               Conread position:50-383
               
               
               Cow position:chr29:34773540-34773858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 73

               
               
               Conread position:50-384
               
               
               Cow position:chr29:6337858-6337535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):225, 20

               
               
               Conread position:50-384
               
               
               Cow position:chr29:12680367-12680033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 238

               
               
               Conread position:50-384
               
               
               Cow position:chr29:42363809-42364139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):17, 97

               
               
               Conread position:51-378
               
               
               Cow position:chr29:15947377-15947056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 127

               
               
               Conread position:52-225
               
               
               Cow position:chr29:33143150-33143321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:52-272
               
               
               Cow position:chr29:4070826-4070613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):212, 76

               
               
               Conread position:52-383
               
               
               Cow position:chr29:43099542-43099869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):14, 72

               
               
               Conread position:53-214
               
               
               Cow position:chr29:22776281-22776123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:53-215
               
               
               Cow position:chr29:36546577-36546739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:53-219
               
               
               Cow position:chr29:25981798-25981963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):145, 115

               
               
               Conread position:53-249
               
               
               Cow position:chr29:9078325-9078520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):103, 52

               
               
               Conread position:53-250
               
               
               Cow position:chr29:13558541-13558341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):124, 11

               
               
               Conread position:53-262
               
               
               Cow position:chr29:15798156-15797948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):81, 32

               
               
               Conread position:53-273
               
               
               Cow position:chr29:16200272-16200494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:53-275
               
               
               Cow position:chr29:16279182-16278970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):211, 87

               
               
               Conread position:53-275
               
               
               Cow position:chr29:39038063-39038287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:53-280
               
               
               Cow position:chr29:22032441-22032664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):141, 39

               
               
               Conread position:53-282
               
               
               Cow position:chr29:28420962-28420730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 177

               
               
               Conread position:53-309
               
               
               Cow position:chr29:23155440-23155177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):68, 202

               
               
               Conread position:53-378
               
               
               Cow position:chr29:29942521-29942849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):73, 56

               
               
               Conread position:53-378
               
               
               Cow position:chr29:36586774-36586463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):101, 133

               
               
               Conread position:53-384
               
               
               Cow position:chr29:732816-732494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):8, 55

               
               
               Conread position:53-384
               
               
               Cow position:chr29:4520535-4520210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 19

               
               
               Conread position:53-384
               
               
               Cow position:chr29:16609955-16609616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):91, 133

               
               
               Conread position:53-384
               
               
               Cow position:chr29:25737215-25737543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 20

               
               
               Conread position:53-384
               
               
               Cow position:chr29:35292291-35291965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):88, 102

               
               
               Conread position:54-272
               
               
               Cow position:chr29:34359619-34359835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 83

               
               
               Conread position:54-378
               
               
               Cow position:chr29:13028654-13028319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):86, 188

               
               
               Conread position:54-381
               
               
               Cow position:chr29:16657895-16657568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):203, 91

               
               
               Conread position:54-384
               
               
               Cow position:chr29:36531070-36530742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 97

               
               
               Conread position:54-384
               
               
               Cow position:chr29:40891503-40891823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):90, 37

               
               
               Conread position:55-272
               
               
               Cow position:chr29:40791500-40791295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):209, 87

               
               
               Conread position:55-329
               
               
               Cow position:chr29:18449935-18450205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):109, 130

               
               
               Conread position:55-365
               
               
               Cow position:chr29:26779080-26778774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):11, 87

               
               
               Conread position:55-376
               
               
               Cow position:chr29:5063347-5063031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 91

               
               
               Conread position:56-248
               
               
               Cow position:chr29:4441003-4441195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):179, 125

               
               
               Conread position:56-270
               
               
               Cow position:chr29:32655892-32656104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):109, 84

               
               
               Conread position:56-333
               
               
               Cow position:chr29:31786876-31786596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:56-378
               
               
               Cow position:chr29:28775264-28775575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):115, 40

               
               
               Conread position:56-384
               
               
               Cow position:chr29:11562828-11562490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):88, 51

               
               
               Conread position:57-228
               
               
               Cow position:chr29:38732356-38732183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:57-251
               
               
               Cow position:chr29:7443866-7444054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:57-272
               
               
               Cow position:chr29:9378836-9378622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:167
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):207, 95

               
               
               Conread position:57-325
               
               
               Cow position:chr29:38979879-38980137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):187, 66

               
               
               Conread position:57-332
               
               
               Cow position:chr29:23220289-23220575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:57-353
               
               
               Cow position:chr29:22028760-22029051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):199, 80

               
               
               Conread position:57-364
               
               
               Cow position:chr29:8926249-8926568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 35

               
               
               Conread position:57-377
               
               
               Cow position:chr29:23698171-23697861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):169, 32

               
               
               Conread position:57-383
               
               
               Cow position:chr29:35501464-35501775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 58

               
               
               Conread position:57-384
               
               
               Cow position:chr29:4479966-4480297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 195

               
               
               Conread position:57-384
               
               
               Cow position:chr29:9709894-9709571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 72

               
               
               Conread position:57-384
               
               
               Cow position:chr29:19762464-19762151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 37

               
               
               Conread position:57-384
               
               
               Cow position:chr29:22162063-22162378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 34

               
               
               Conread position:57-384
               
               
               Cow position:chr29:40583986-40583668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:57-384
               
               
               Cow position:chr29:40763495-40763803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):136, 88

               
               
               Conread position:58-183
               
               
               Cow position:chr29:659481-659357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:58-252
               
               
               Cow position:chr29:35259181-35258991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):120, 36

               
               
               Conread position:58-265
               
               
               Cow position:chr29:26540340-26540547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):100, 89

               
               
               Conread position:58-282
               
               
               Cow position:chr29:22734906-22735130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):60, 28

               
               
               Conread position:58-321
               
               
               Cow position:chr29:31944066-31943802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):139, 14

               
               
               Conread position:58-331
               
               
               Cow position:chr29:36952112-36952372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):206, 82

               
               
               Conread position:58-344
               
               
               Cow position:chr29:14501795-14501506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):130, 240

               
               
               Conread position:58-347
               
               
               Cow position:chr29:28994056-28993772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):146, 68

               
               
               Conread position:58-373
               
               
               Cow position:chr29:11612047-11611725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 120

               
               
               Conread position:58-384
               
               
               Cow position:chr29:699428-699744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):193, 99

               
               
               Conread position:58-384
               
               
               Cow position:chr29:28196820-28197129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):209, 33

               
               
               Conread position:59-219
               
               
               Cow position:chr29:43311343-43311509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:59-238
               
               
               Cow position:chr29:26631248-26631061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:59-249
               
               
               Cow position:chr29:9800858-9800659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):85, 143

               
               
               Conread position:59-249
               
               
               Cow position:chr29:17085482-17085673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):90, 127

               
               
               Conread position:59-257
               
               
               Cow position:chr29:27812161-27811968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):71, 18

               
               
               Conread position:59-272
               
               
               Cow position:chr29:24187864-24188080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):85, 130

               
               
               Conread position:59-308
               
               
               Cow position:chr29:31200474-31200207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:59-325
               
               
               Cow position:chr29:44139046-44139312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):205, 86

               
               
               Conread position:59-337
               
               
               Cow position:chr29:21645516-21645246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):68, 143

               
               
               Conread position:59-364
               
               
               Cow position:chr29:29183922-29183619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):88, 124

               
               
               Conread position:59-377
               
               
               Cow position:chr29:24293069-24292753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 50

               
               
               Conread position:59-377
               
               
               Cow position:chr29:28813773-28814097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):97, 128

               
               
               Conread position:59-378
               
               
               Cow position:chr29:22068542-22068865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):85, 112

               
               
               Conread position:59-378
               
               
               Cow position:chr29:32799504-32799827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):85, 177

               
               
               Conread position:59-379
               
               
               Cow position:chr29:11916020-11915701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:59-379
               
               
               Cow position:chr29:21196453-21196770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):112, 81

               
               
               Conread position:59-383
               
               
               Cow position:chr29:26672700-26673030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):67, 230

               
               
               Conread position:59-384
               
               
               Cow position:chr29:2056259-2055932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):32, 77

               
               
               Conread position:59-384
               
               
               Cow position:chr29:4874691-4875018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:239
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):187, 63

               
               
               Conread position:59-384
               
               
               Cow position:chr29:14112578-14112253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:59-384
               
               
               Cow position:chr29:16309920-16309617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):206, 35

               
               
               Conread position:59-384
               
               
               Cow position:chr29:24035211-24035528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):181, 16

               
               
               Conread position:59-384
               
               
               Cow position:chr29:25268337-25267996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):78, 119

               
               
               Conread position:59-384
               
               
               Cow position:chr29:31929185-31928856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):205, 62

               
               
               Conread position:59-385
               
               
               Cow position:chr29:1325645-1325314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):53, 100

               
               
               Conread position:60-238
               
               
               Cow position:chr29:936401-936227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:60-238
               
               
               Cow position:chr29:24065883-24065706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):107, 111

               
               
               Conread position:60-255
               
               
               Cow position:chr29:5953658-5953856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):70, 130

               
               
               Conread position:60-256
               
               
               Cow position:chr29:36697955-36697759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):100, 34

               
               
               Conread position:60-262
               
               
               Cow position:chr29:12890874-12890681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:60-271
               
               
               Cow position:chr29:29308384-29308586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):204, 62

               
               
               Conread position:60-272
               
               
               Cow position:chr29:36357326-36357114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):69, 161

               
               
               Conread position:60-289
               
               
               Cow position:chr29:396600-396381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):204, 80

               
               
               Conread position:60-365
               
               
               Cow position:chr29:3685323-3685618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):150, 78

               
               
               Conread position:60-366
               
               
               Cow position:chr29:5520286-5520612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):76, 99

               
               
               Conread position:60-368
               
               
               Cow position:chr29:5408944-5409249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):204, 113

               
               
               Conread position:60-381
               
               
               Cow position:chr29:28195335-28195635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):204, 68

               
               
               Conread position:60-384
               
               
               Cow position:chr29:10058345-10058661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 31

               
               
               Conread position:60-384
               
               
               Cow position:chr29:10839137-10838825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:60-384
               
               
               Cow position:chr29:17110151-17109843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 29

               
               
               Conread position:60-384
               
               
               Cow position:chr29:20626768-20626450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):44, 130

               
               
               Conread position:60-384
               
               
               Cow position:chr29:22690425-22690098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):86, 118

               
               
               Conread position:60-384
               
               
               Cow position:chr29:28734849-28735170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):74, 126

               
               
               Conread position:60-384
               
               
               Cow position:chr29:31489522-31489196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):67, 230

               
               
               Conread position:60-384
               
               
               Cow position:chr29:35405592-35405919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:60-384
               
               
               Cow position:chr29:38440455-38440117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:61-274
               
               
               Cow position:chr29:6686454-6686650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):203, 66

               
               
               Conread position:61-274
               
               
               Cow position:chr29:28066677-28066474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):203, 30

               
               
               Conread position:61-285
               
               
               Cow position:chr29:25944097-25944331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 118

               
               
               Conread position:61-349
               
               
               Cow position:chr29:23812851-23813126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):198, 34

               
               
               Conread position:61-370
               
               
               Cow position:chr29:5046850-5046541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):88, 30

               
               
               Conread position:61-381
               
               
               Cow position:chr29:40117762-40117446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 81

               
               
               Conread position:61-384
               
               
               Cow position:chr29:12783758-12784082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):80, 146

               
               
               Conread position:61-384
               
               
               Cow position:chr29:43328829-43328515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):214, 46

               
               
               Conread position:62-224
               
               
               Cow position:chr29:42405145-42404981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):84, 122

               
               
               Conread position:62-384
               
               
               Cow position:chr29:22714514-22714849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):82, 203

               
               
               Conread position:62-406
               
               
               Cow position:chr29:34745465-34745805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:63-271
               
               
               Cow position:chr29:3293138-3292934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):105, 79

               
               
               Conread position:64-252
               
               
               Cow position:chr29:8634846-8634660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):64, 49

               
               
               Conread position:64-252
               
               
               Cow position:chr29:22335031-22335223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 51

               
               
               Conread position:64-254
               
               
               Cow position:chr29:26539425-26539239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):108, 82

               
               
               Conread position:64-343
               
               
               Cow position:chr29:40874222-40873924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):51, 240

               
               
               Conread position:64-384
               
               
               Cow position:chr29:5893040-5892723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):64, 27

               
               
               Conread position:64-384
               
               
               Cow position:chr29:24952881-24952563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):80, 137

               
               
               Conread position:65-318
               
               
               Cow position:chr29:30681510-30681771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):79, 170

               
               
               Conread position:66-378
               
               
               Cow position:chr29:21443149-21443460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):83, 26

               
               
               Conread position:68-332
               
               
               Cow position:chr29:28840363-28840080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:69-379
               
               
               Cow position:chr29:30441128-30440811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):80, 199

               
               
               Conread position:71-280
               
               
               Cow position:chr29:7290956-7290753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):194, 20

               
               
               Conread position:71-282
               
               
               Cow position:chr29:23114813-23115026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):76, 118

               
               
               Conread position:71-335
               
               
               Cow position:chr29:29324233-29324490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 131

               
               
               Conread position:72-262
               
               
               Cow position:chr29:15796670-15796482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:72-282
               
               
               Cow position:chr29:17804716-17804510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):192, 67

               
               
               Conread position:72-290
               
               
               Cow position:chr29:32197880-32197664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):192, 74

               
               
               Conread position:72-348
               
               
               Cow position:chr29:7955802-7956075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):77, 121

               
               
               Conread position:72-383
               
               
               Cow position:chr29:39111138-39111439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 68

               
               
               Conread position:72-384
               
               
               Cow position:chr29:24046184-24045865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):81, 104

               
               
               Conread position:72-384
               
               
               Cow position:chr29:34358793-34359105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 7

               
               
               Conread position:74-318
               
               
               Cow position:chr29:43544421-43544661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):93, 67

               
               
               Conread position:79-220
               
               
               Cow position:chr29:41223343-41223203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 53

               
               
               Conread position:79-378
               
               
               Cow position:chr29:19253650-19253939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):75, 34

               
               
               Conread position:79-378
               
               
               Cow position:chr29:19389659-19389368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):72, 97

               
               
               Conread position:79-384
               
               
               Cow position:chr29:38582149-38581850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):67, 168

               
               
               Conread position:80-366
               
               
               Cow position:chr29:17168583-17168298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):180, 64

               
               
               Conread position:81-252
               
               
               Cow position:chr29:11116486-11116655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:82-336
               
               
               Cow position:chr29:40633829-40633569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):56, 205

               
               
               Conread position:82-384
               
               
               Cow position:chr29:29795204-29795513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):100, 209

               
               
               Conread position:83-336
               
               
               Cow position:chr29:22184436-22184181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):71, 94

               
               
               Conread position:83-384
               
               
               Cow position:chr29:5275076-5275380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 180

               
               
               Conread position:89-230
               
               
               Cow position:chr29:34688741-34688878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:89-384
               
               
               Cow position:chr29:86835-87143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 174

               
               
               Conread position:89-384
               
               
               Cow position:chr29:3100096-3100383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):28, 56

               
               
               Conread position:90-283
               
               
               Cow position:chr29:22723767-22723575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:157
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):174, 62

               
               
               Conread position:90-330
               
               
               Cow position:chr29:30548944-30548702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:91-384
               
               
               Cow position:chr29:1557094-1556807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:91-384
               
               
               Cow position:chr29:45005458-45005750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:95-325
               
               
               Cow position:chr29:32176831-32176613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):169, 33

               
               
               Conread position:98-383
               
               
               Cow position:chr29:29975199-29974920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):84, 180

               
               
               Conread position:102-384
               
               
               Cow position:chr29:11647245-11646970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):179, 10

               
               
               Conread position:106-384
               
               
               Cow position:chr29:8176809-8176523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 70

               
               
               Conread position:106-384
               
               
               Cow position:chr29:28166072-28166338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):158, 46

               
               
               Conread position:127-333
               
               
               Cow position:chr29:742523-742722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):140, 19

               
               
               Conread position:127-378
               
               
               Cow position:chr29:6844501-6844747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):103, 166

               
               
               Conread position:128-318
               
               
               Cow position:chr29:30708493-30708680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 50

               
               
               Conread position:128-352
               
               
               Cow position:chr29:2262865-2263090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):135, 88

               
               
               Conread position:128-366
               
               
               Cow position:chr29:32290736-32290501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):136, 20

               
               
               Conread position:128-380
               
               
               Cow position:chr29:25333331-25333582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):135, 90

               
               
               Conread position:128-382
               
               
               Cow position:chr29:10156178-10156428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):138, 26

               
               
               Conread position:128-382
               
               
               Cow position:chr29:13639238-13639493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:128-384
               
               
               Cow position:chr29:27589051-27588798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):172, 28

               
               
               Conread position:129-326
               
               
               Cow position:chr29:38978660-38978462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):26, 66

               
               
               Conread position:129-368
               
               
               Cow position:chr29:11705242-11705014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 89

               
               
               Conread position:129-384
               
               
               Cow position:chr29:24252364-24252113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 28

               
               
               Conread position:131-251
               
               
               Cow position:chr29:17022277-17022157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:131-347
               
               
               Cow position:chr29:18085699-18085482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):133, 212

               
               
               Conread position:131-377
               
               
               Cow position:chr29:26559119-26559358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):55, 47

               
               
               Conread position:131-377
               
               
               Cow position:chr29:40959721-40959965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):25, 137

               
               
               Conread position:131-381
               
               
               Cow position:chr29:40853055-40852814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):133, 161

               
               
               Conread position:131-382
               
               
               Cow position:chr29:19339126-19338865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):95, 21

               
               
               Conread position:132-301
               
               
               Cow position:chr29:30918675-30918506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):132, 162

               
               
               Conread position:132-368
               
               
               Cow position:chr29:847518-847750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 20

               
               
               Conread position:132-384
               
               
               Cow position:chr29:29314536-29314780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:132-384
               
               
               Cow position:chr29:32210947-32211181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:132-394
               
               
               Cow position:chr29:17409459-17409202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:133-339
               
               
               Cow position:chr29:22519004-22519210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):63, 19

               
               
               Conread position:133-373
               
               
               Cow position:chr29:6286036-6286272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):131, 144

               
               
               Conread position:133-381
               
               
               Cow position:chr29:26653920-26654159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:133-384
               
               
               Cow position:chr29:23243755-23244005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):162, 19

               
               
               Conread position:135-383
               
               
               Cow position:chr29:22175802-22175563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:137-384
               
               
               Cow position:chr29:36217233-36216992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):127, 85

               
               
               Conread position:138-384
               
               
               Cow position:chr29:4003010-4002771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):81, 9

               
               
               Conread position:140-384
               
               
               Cow position:chr29:41811472-41811707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):52, 38

               
               
               Conread position:141-378
               
               
               Cow position:chr29:12625859-12626098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:141-384
               
               
               Cow position:chr29:11053743-11053985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):123, 89

               
               
               Conread position:146-381
               
               
               Cow position:chr29:13372775-13372543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):20, 25

               
               
               Conread position:146-382
               
               
               Cow position:chr29:22936383-22936145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:146-384
               
               
               Cow position:chr29:20903178-20903409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):149, 110

               
               
               Conread position:147-366
               
               
               Cow position:chr29:6015237-6015015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):108, 102

               
               
               Conread position:147-377
               
               
               Cow position:chr29:39567792-39567569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):117, 14

               
               
               Conread position:147-378
               
               
               Cow position:chr29:6293369-6293593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:147-382
               
               
               Cow position:chr29:4367837-4367597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 41

               
               
               Conread position:147-382
               
               
               Cow position:chr29:29176506-29176738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):117, 80

               
               
               Conread position:147-383
               
               
               Cow position:chr29:17607527-17607296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):115, 31

               
               
               Conread position:147-384
               
               
               Cow position:chr29:9912287-9912047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 28

               
               
               Conread position:147-384
               
               
               Cow position:chr29:26615605-26615847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 149

               
               
               Conread position:148-345
               
               
               Cow position:chr29:26416460-26416265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):116, 7

               
               
               Conread position:150-339
               
               
               Cow position:chr29:18012666-18012474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:150-383
               
               
               Cow position:chr29:28446148-28446380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):114, 48

               
               
               Conread position:150-384
               
               
               Cow position:chr29:28868751-28868511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 141

               
               
               Conread position:151-384
               
               
               Cow position:chr29:27329999-27329767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):116, 23

               
               
               Conread position:152-383
               
               
               Cow position:chr29:17154884-17154643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):112, 74

               
               
               Conread position:153-343
               
               
               Cow position:chr29:463547-463742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 21

               
               
               Conread position:155-384
               
               
               Cow position:chr29:1229710-1229486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):151, 166

               
               
               Conread position:155-384
               
               
               Cow position:chr29:44008682-44008907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):219, 53

               
               
               Conread position:156-362
               
               
               Cow position:chr29:24578965-24578755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:156-384
               
               
               Cow position:chr29:27826622-27826401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):108, 65

               
               
               Conread position:158-384
               
               
               Cow position:chr29:10235034-10235254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):117, 74

               
               
               Conread position:160-384
               
               
               Cow position:chr29:23983857-23984084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):104, 125

               
               
               Conread position:161-378
               
               
               Cow position:chr29:2984987-2984769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):107, 52

               
               
               Conread position:161-383
               
               
               Cow position:chr29:5186396-5186619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):103, 127

               
               
               Conread position:174-378
               
               
               Cow position:chr29:868859-868656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):90, 114

               
               
               Conread position:179-384
               
               
               Cow position:chr29:44682025-44682222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):114, 85

               
               
               Conread position:180-384
               
               
               Cow position:chr29:15940552-15940758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):84, 198

               
               
               Conread position:184-384
               
               
               Cow position:chr29:10456491-10456684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):80, 38

               
               
               Conread position:187-382
               
               
               Cow position:chr29:40166315-40166123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):77, 146

               
               
               Conread position:189-384
               
               
               Cow position:chr29:6926074-6925887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 33

               
               
               Conread position:191-319
               
               
               Cow position:chr29:31477046-31477177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 92

               
               
               Conread position:191-384
               
               
               Cow position:chr29:43009017-43009207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):76, 84

               
               
               Conread position:193-382
               
               
               Cow position:chr29:24103476-24103668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):71, 40

               
               
               Conread position:195-368
               
               
               Cow position:chr29:21941664-21941490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:201-384
               
               
               Cow position:chr29:17301591-17301404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:214-384
               
               
               Cow position:chr29:42849269-42849098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:224-384
               
               
               Cow position:chr29:31594093-31594255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):40, 57

               
               
               Conread position:1-220
               
               
               Cow position:chr3:3262590-3262818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):126, 30

               
               
               Conread position:1-332
               
               
               Cow position:chr3:39912451-39912782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 95

               
               
               Conread position:1-373
               
               
               Cow position:chr3:175176-174811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):181, 63

               
               
               Conread position:1-384
               
               
               Cow position:chr3:4319946-4319567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:272
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):109, 19

               
               
               Conread position:1-384
               
               
               Cow position:chr3:68880898-68881259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:264
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):263, 56

               
               
               Conread position:2-235
               
               
               Cow position:chr3:4071529-4071769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):28, 184

               
               
               Conread position:2-304
               
               
               Cow position:chr3:46792621-46792318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):67, 131

               
               
               Conread position:2-378
               
               
               Cow position:chr3:65969406-65969020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 65

               
               
               Conread position:3-255
               
               
               Cow position:chr3:70402866-70402625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:3-347
               
               
               Cow position:chr3:58527608-58527282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):45, 22

               
               
               Conread position:4-378
               
               
               Cow position:chr3:3556775-3556410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:255
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):139, 39

               
               
               Conread position:4-384
               
               
               Cow position:chr3:2675259-2674880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 19

               
               
               Conread position:6-368
               
               
               Cow position:chr3:67929027-67929392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):19, 116

               
               
               Conread position:7-249
               
               
               Cow position:chr3:65308229-65308467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):137, 18

               
               
               Conread position:7-384
               
               
               Cow position:chr3:39661228-39661600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:252
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):147, 14

               
               
               Conread position:8-238
               
               
               Cow position:chr3:83934952-83934723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 132

               
               
               Conread position:9-272
               
               
               Cow position:chr3:84137587-84137852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 139

               
               
               Conread position:9-384
               
               
               Cow position:chr3:2518315-2518680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:9-384
               
               
               Cow position:chr3:77271064-77271420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):255, 41

               
               
               Conread position:10-331
               
               
               Cow position:chr3:5706987-5707309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:10-384
               
               
               Cow position:chr3:2396565-2396926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:264
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):15, 140

               
               
               Conread position:12-241
               
               
               Cow position:chr3:79398363-79398137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 36

               
               
               Conread position:12-384
               
               
               Cow position:chr3:53592464-53592844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):142, 61

               
               
               Conread position:13-378
               
               
               Cow position:chr3:2648290-2648653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):18, 7

               
               
               Conread position:15-366
               
               
               Cow position:chr3:49460706-49461059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):167, 93

               
               
               Conread position:19-344
               
               
               Cow position:chr3:1037241-1036918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:19-383
               
               
               Cow position:chr3:10372470-10372134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):240, 18

               
               
               Conread position:20-246
               
               
               Cow position:chr3:19641279-19641050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):116, 37

               
               
               Conread position:22-230
               
               
               Cow position:chr3:8147307-8147520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 98

               
               
               Conread position:22-383
               
               
               Cow position:chr3:53428711-53429042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:257
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:23-325
               
               
               Cow position:chr3:73961476-73961788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:23-384
               
               
               Cow position:chr3:80565172-80564816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 27

               
               
               Conread position:24-270
               
               
               Cow position:chr3:18831629-18831386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):9, 42

               
               
               Conread position:24-352
               
               
               Cow position:chr3:55094019-55094350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):40, 71

               
               
               Conread position:24-383
               
               
               Cow position:chr3:55970728-55970359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:251
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):36, 182

               
               
               Conread position:25-378
               
               
               Cow position:chr3:48851761-48852102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):122, 24

               
               
               Conread position:26-233
               
               
               Cow position:chr3:18471511-18471304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):128, 30

               
               
               Conread position:26-247
               
               
               Cow position:chr3:35802723-35802952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):29, 167

               
               
               Conread position:26-329
               
               
               Cow position:chr3:22845113-22844810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):153, 38

               
               
               Conread position:26-373
               
               
               Cow position:chr3:67519964-67520308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 113

               
               
               Conread position:26-378
               
               
               Cow position:chr3:1517308-1517655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):238, 31

               
               
               Conread position:26-384
               
               
               Cow position:chr3:13301644-13301996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):118, 24

               
               
               Conread position:27-247
               
               
               Cow position:chr3:59317904-59317691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):127, 22

               
               
               Conread position:27-268
               
               
               Cow position:chr3:32317623-32317864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):140, 26

               
               
               Conread position:27-342
               
               
               Cow position:chr3:22165208-22165523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):237, 26

               
               
               Conread position:27-368
               
               
               Cow position:chr3:83491290-83490955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):23, 97

               
               
               Conread position:27-378
               
               
               Cow position:chr3:68587226-68586879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:243
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):48, 37

               
               
               Conread position:27-384
               
               
               Cow position:chr3:31297949-31298303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:243
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):119, 143

               
               
               Conread position:28-255
               
               
               Cow position:chr3:12669345-12669117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):103, 29

               
               
               Conread position:28-383
               
               
               Cow position:chr3:48241812-48241470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):256, 36

               
               
               Conread position:28-384
               
               
               Cow position:chr3:51578114-51578467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):24, 9

               
               
               Conread position:28-384
               
               
               Cow position:chr3:55712636-55712282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):234, 25

               
               
               Conread position:29-206
               
               
               Cow position:chr3:8540706-8540537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:29-227
               
               
               Cow position:chr3:68624422-68624226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):104, 22

               
               
               Conread position:29-232
               
               
               Cow position:chr3:74050507-74050698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:29-342
               
               
               Cow position:chr3:15671949-15672265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):134, 24

               
               
               Conread position:29-350
               
               
               Cow position:chr3:73837510-73837830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):20, 158

               
               
               Conread position:29-355
               
               
               Cow position:chr3:26992773-26992448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):118, 18

               
               
               Conread position:29-377
               
               
               Cow position:chr3:71496924-71497282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):106, 27

               
               
               Conread position:29-378
               
               
               Cow position:chr3:83727040-83727385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):57, 35

               
               
               Conread position:29-378
               
               
               Cow position:chr3:83797616-83797976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):35, 289

               
               
               Conread position:29-384
               
               
               Cow position:chr3:26488873-26489232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):140, 24

               
               
               Conread position:29-384
               
               
               Cow position:chr3:69144906-69144558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):24, 151

               
               
               Conread position:29-384
               
               
               Cow position:chr3:72474123-72473764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):125, 19

               
               
               Conread position:29-384
               
               
               Cow position:chr3:77582310-77581961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):115, 22

               
               
               Conread position:29-384
               
               
               Cow position:chr3:78945615-78945980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:259
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):37, 234

               
               
               Conread position:31-154
               
               
               Cow position:chr3:478622-478740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:31-231
               
               
               Cow position:chr3:24774841-24774658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:31-255
               
               
               Cow position:chr3:27286720-27286499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):31, 112

               
               
               Conread position:31-273
               
               
               Cow position:chr3:7860042-7860291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 149

               
               
               Conread position:31-273
               
               
               Cow position:chr3:45822817-45823060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):115, 22

               
               
               Conread position:31-275
               
               
               Cow position:chr3:79272372-79272613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):233, 111

               
               
               Conread position:31-314
               
               
               Cow position:chr3:80709668-80709948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 22

               
               
               Conread position:31-321
               
               
               Cow position:chr3:18001392-18001116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 65

               
               
               Conread position:31-328
               
               
               Cow position:chr3:52487829-52487534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):96, 20

               
               
               Conread position:31-329
               
               
               Cow position:chr3:80597929-80597630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):116, 22

               
               
               Conread position:31-343
               
               
               Cow position:chr3:69785413-69785730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 307

               
               
               Conread position:31-378
               
               
               Cow position:chr3:79902699-79902365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:31-383
               
               
               Cow position:chr3:8591164-8591504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):115, 146

               
               
               Conread position:31-383
               
               
               Cow position:chr3:50768883-50768536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 120

               
               
               Conread position:31-384
               
               
               Cow position:chr3:24548627-24548993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:31-384
               
               
               Cow position:chr3:26739220-26739567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 35

               
               
               Conread position:31-384
               
               
               Cow position:chr3:57754270-57754627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):19, 96

               
               
               Conread position:31-384
               
               
               Cow position:chr3:74234379-74234049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 22

               
               
               Conread position:31-410
               
               
               Cow position:chr3:18426498-18426875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 20

               
               
               Conread position:31-440
               
               
               Cow position:chr3:3656718-3656311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):113, 22

               
               
               Conread position:32-343
               
               
               Cow position:chr3:54049828-54050132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):156, 21

               
               
               Conread position:32-373
               
               
               Cow position:chr3:30026573-30026240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:32-378
               
               
               Cow position:chr3:53384080-53384424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):117, 17

               
               
               Conread position:32-384
               
               
               Cow position:chr3:12705349-12705693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 15

               
               
               Conread position:32-384
               
               
               Cow position:chr3:32787661-32787313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:32-384
               
               
               Cow position:chr3:53094724-53095083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:32-384
               
               
               Cow position:chr3:60933616-60933269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):134, 17

               
               
               Conread position:33-330
               
               
               Cow position:chr3:79824718-79825015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):114, 31

               
               
               Conread position:33-345
               
               
               Cow position:chr3:57704535-57704214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):28, 110

               
               
               Conread position:33-366
               
               
               Cow position:chr3:11199775-11200110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):132, 31

               
               
               Conread position:33-366
               
               
               Cow position:chr3:18143913-18144251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):15, 32

               
               
               Conread position:33-379
               
               
               Cow position:chr3:83215472-83215117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:33-383
               
               
               Cow position:chr3:74601311-74600965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 32

               
               
               Conread position:33-384
               
               
               Cow position:chr3:53318608-53318256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):101, 18

               
               
               Conread position:33-384
               
               
               Cow position:chr3:67698479-67698132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:33-384
               
               
               Cow position:chr3:68145657-68145990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):233, 19

               
               
               Conread position:33-442
               
               
               Cow position:chr3:51033574-51033163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):108, 62

               
               
               Conread position:34-244
               
               
               Cow position:chr3:29334214-29334422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):110, 18

               
               
               Conread position:34-266
               
               
               Cow position:chr3:9718042-9718281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 150

               
               
               Conread position:34-339
               
               
               Cow position:chr3:36240310-36240003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):120, 60

               
               
               Conread position:34-376
               
               
               Cow position:chr3:17235001-17235348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):27, 261

               
               
               Conread position:34-384
               
               
               Cow position:chr3:30462976-30463313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):212, 19

               
               
               Conread position:34-394
               
               
               Cow position:chr3:15953882-15954243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):54, 30

               
               
               Conread position:35-241
               
               
               Cow position:chr3:81616248-81616458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:35-325
               
               
               Cow position:chr3:48477844-48478121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):249, 38

               
               
               Conread position:35-378
               
               
               Cow position:chr3:73237383-73237053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 92

               
               
               Conread position:35-384
               
               
               Cow position:chr3:29891200-29891560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):26, 160

               
               
               Conread position:35-384
               
               
               Cow position:chr3:56476873-56476533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 35

               
               
               Conread position:36-216
               
               
               Cow position:chr3:48537563-48537382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):110, 17

               
               
               Conread position:36-271
               
               
               Cow position:chr3:73421283-73421528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:36-277
               
               
               Cow position:chr3:44960141-44959900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:36-282
               
               
               Cow position:chr3:16505284-16505522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):55, 39

               
               
               Conread position:36-384
               
               
               Cow position:chr3:71478793-71478444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):25, 60

               
               
               Conread position:36-388
               
               
               Cow position:chr3:36375341-36375695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):96, 17

               
               
               Conread position:36-424
               
               
               Cow position:chr3:15443534-15443918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:271
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):110, 15

               
               
               Conread position:37-241
               
               
               Cow position:chr3:15859181-15859384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 104

               
               
               Conread position:37-249
               
               
               Cow position:chr3:68566010-68565806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):204, 44

               
               
               Conread position:37-313
               
               
               Cow position:chr3:10591314-10591595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):26, 92

               
               
               Conread position:37-348
               
               
               Cow position:chr3:22668609-22668303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):99, 27

               
               
               Conread position:37-355
               
               
               Cow position:chr3:58134487-58134806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):117, 28

               
               
               Conread position:37-376
               
               
               Cow position:chr3:55318702-55319041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):155, 16

               
               
               Conread position:37-384
               
               
               Cow position:chr3:3985513-3985180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):227, 20

               
               
               Conread position:37-384
               
               
               Cow position:chr3:17221936-17222291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 19

               
               
               Conread position:38-230
               
               
               Cow position:chr3:44782535-44782345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:38-252
               
               
               Cow position:chr3:47198932-47199143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):109, 15

               
               
               Conread position:38-378
               
               
               Cow position:chr3:25690995-25690651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):106, 15

               
               
               Conread position:38-384
               
               
               Cow position:chr3:210521-210169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):37, 307

               
               
               Conread position:39-256
               
               
               Cow position:chr3:21050469-21050692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):21, 124

               
               
               Conread position:39-289
               
               
               Cow position:chr3:9121037-9120791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):89, 14

               
               
               Conread position:39-344
               
               
               Cow position:chr3:9117227-9116920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:39-384
               
               
               Cow position:chr3:58960399-58960736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):225, 17

               
               
               Conread position:40-227
               
               
               Cow position:chr3:40957933-40958118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:40-241
               
               
               Cow position:chr3:15795416-15795214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):106, 136

               
               
               Conread position:40-241
               
               
               Cow position:chr3:80958314-80958516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):104, 173

               
               
               Conread position:40-321
               
               
               Cow position:chr3:19682902-19682607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:40-341
               
               
               Cow position:chr3:44624984-44625268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):115, 53

               
               
               Conread position:40-345
               
               
               Cow position:chr3:56583039-56582729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):148, 12

               
               
               Conread position:40-368
               
               
               Cow position:chr3:11253969-11254290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):17, 147

               
               
               Conread position:40-384
               
               
               Cow position:chr3:68707827-68708151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 82

               
               
               Conread position:41-255
               
               
               Cow position:chr3:35075069-35074859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):19, 89

               
               
               Conread position:41-301
               
               
               Cow position:chr3:84174498-84174235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 222

               
               
               Conread position:41-365
               
               
               Cow position:chr3:73299260-73298958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 46

               
               
               Conread position:41-384
               
               
               Cow position:chr3:73467820-73467475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):132, 50

               
               
               Conread position:42-355
               
               
               Cow position:chr3:48459135-48459448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 127

               
               
               Conread position:43-241
               
               
               Cow position:chr3:55730274-55730474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):106, 135

               
               
               Conread position:43-282
               
               
               Cow position:chr3:68004515-68004749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):21, 10

               
               
               Conread position:43-285
               
               
               Cow position:chr3:25904847-25905099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:43-378
               
               
               Cow position:chr3:71238668-71238332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):45, 186

               
               
               Conread position:43-384
               
               
               Cow position:chr3:26681617-26681945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):9, 109

               
               
               Conread position:44-378
               
               
               Cow position:chr3:18185266-18184932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):93, 23

               
               
               Conread position:45-249
               
               
               Cow position:chr3:32436828-32436627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 99

               
               
               Conread position:45-317
               
               
               Cow position:chr3:47316186-47316461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 100

               
               
               Conread position:45-365
               
               
               Cow position:chr3:79884289-79884610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):21, 143

               
               
               Conread position:45-384
               
               
               Cow position:chr3:16333998-16333653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):8, 150

               
               
               Conread position:45-384
               
               
               Cow position:chr3:45279658-45279317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):109, 19

               
               
               Conread position:46-368
               
               
               Cow position:chr3:29596583-29596262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):92, 18

               
               
               Conread position:46-384
               
               
               Cow position:chr3:5044622-5044953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):101, 7

               
               
               Conread position:46-384
               
               
               Cow position:chr3:15153878-15153545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):8, 94

               
               
               Conread position:46-384
               
               
               Cow position:chr3:54903755-54903425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):123, 19

               
               
               Conread position:47-241
               
               
               Cow position:chr3:70333043-70333226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:47-272
               
               
               Cow position:chr3:8813917-8814149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):84, 10

               
               
               Conread position:47-326
               
               
               Cow position:chr3:71474220-71474498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):218, 18

               
               
               Conread position:47-343
               
               
               Cow position:chr3:30008719-30009020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:47-369
               
               
               Cow position:chr3:18059890-18059569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):130, 6

               
               
               Conread position:47-378
               
               
               Cow position:chr3:76156175-76155846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 100

               
               
               Conread position:47-382
               
               
               Cow position:chr3:48253065-48252738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):117, 6

               
               
               Conread position:47-384
               
               
               Cow position:chr3:15786757-15786419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 191

               
               
               Conread position:47-384
               
               
               Cow position:chr3:22675919-22676238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 24

               
               
               Conread position:47-404
               
               
               Cow position:chr3:29359975-29360305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 56

               
               
               Conread position:48-257
               
               
               Cow position:chr3:27246780-27246980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:48-270
               
               
               Cow position:chr3:18249141-18248917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):103, 16

               
               
               Conread position:48-272
               
               
               Cow position:chr3:20841691-20841910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):11, 75

               
               
               Conread position:48-296
               
               
               Cow position:chr3:14770700-14770942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):211, 16

               
               
               Conread position:48-360
               
               
               Cow position:chr3:48468362-48468059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:48-368
               
               
               Cow position:chr3:49482528-49482838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):92, 16

               
               
               Conread position:48-373
               
               
               Cow position:chr3:79221039-79220718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):98, 16

               
               
               Conread position:48-378
               
               
               Cow position:chr3:54100525-54100862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):18, 250

               
               
               Conread position:48-378
               
               
               Cow position:chr3:61539984-61539662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):85, 5

               
               
               Conread position:48-378
               
               
               Cow position:chr3:79098286-79097962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:48-381
               
               
               Cow position:chr3:30180268-30179936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):212, 5

               
               
               Conread position:48-384
               
               
               Cow position:chr3:29946573-29946247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):99, 22

               
               
               Conread position:48-384
               
               
               Cow position:chr3:71161975-71161647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):75, 49

               
               
               Conread position:49-238
               
               
               Cow position:chr3:11027463-11027272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):100, 137

               
               
               Conread position:49-255
               
               
               Cow position:chr3:50350792-50350988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):160, 78

               
               
               Conread position:49-262
               
               
               Cow position:chr3:32248199-32247986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):97, 24

               
               
               Conread position:49-327
               
               
               Cow position:chr3:23203043-23203325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):98, 144

               
               
               Conread position:49-378
               
               
               Cow position:chr3:6299644-6299328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):107, 43

               
               
               Conread position:49-378
               
               
               Cow position:chr3:39066514-39066197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):122, 16

               
               
               Conread position:49-383
               
               
               Cow position:chr3:45882083-45881763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 8

               
               
               Conread position:49-384
               
               
               Cow position:chr3:17936661-17936982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 92

               
               
               Conread position:49-384
               
               
               Cow position:chr3:18067316-18066988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):122, 43

               
               
               Conread position:49-384
               
               
               Cow position:chr3:53910292-53909966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):116, 42

               
               
               Conread position:50-220
               
               
               Cow position:chr3:57641990-57641816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 162

               
               
               Conread position:50-231
               
               
               Cow position:chr3:21959850-21959664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):92, 62

               
               
               Conread position:50-233
               
               
               Cow position:chr3:26977723-26977537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:50-235
               
               
               Cow position:chr3:77654105-77653929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:50-238
               
               
               Cow position:chr3:2016618-2016433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):11, 89

               
               
               Conread position:50-239
               
               
               Cow position:chr3:46259897-46259707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):94, 107

               
               
               Conread position:50-241
               
               
               Cow position:chr3:28905157-28904965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):70, 15

               
               
               Conread position:50-241
               
               
               Cow position:chr3:37641511-37641320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):177, 93

               
               
               Conread position:50-241
               
               
               Cow position:chr3:44594808-44594619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):99, 23

               
               
               Conread position:50-244
               
               
               Cow position:chr3:56943745-56943934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:50-246
               
               
               Cow position:chr3:23818674-23818481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):8, 76

               
               
               Conread position:50-247
               
               
               Cow position:chr3:26337832-26338031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:50-247
               
               
               Cow position:chr3:38331423-38331623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):10, 138

               
               
               Conread position:50-248
               
               
               Cow position:chr3:28883977-28884173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):85, 97

               
               
               Conread position:50-248
               
               
               Cow position:chr3:43388941-43389140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:50-249
               
               
               Cow position:chr3:13882334-13882534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:50-249
               
               
               Cow position:chr3:63860423-63860624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):14, 128

               
               
               Conread position:50-252
               
               
               Cow position:chr3:16710612-16710815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):58, 14

               
               
               Conread position:50-252
               
               
               Cow position:chr3:23037323-23037525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 60

               
               
               Conread position:50-255
               
               
               Cow position:chr3:53604559-53604765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):96, 136

               
               
               Conread position:50-257
               
               
               Cow position:chr3:51150314-51150107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:50-257
               
               
               Cow position:chr3:73589580-73589792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:50-267
               
               
               Cow position:chr3:5703361-5703146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):209, 94

               
               
               Conread position:50-267
               
               
               Cow position:chr3:78071607-78071823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):198, 106

               
               
               Conread position:50-271
               
               
               Cow position:chr3:35624356-35624581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 137

               
               
               Conread position:50-272
               
               
               Cow position:chr3:40212849-40213070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 78

               
               
               Conread position:50-276
               
               
               Cow position:chr3:22924195-22924416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):214, 92

               
               
               Conread position:50-285
               
               
               Cow position:chr3:82366314-82366079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):83, 97

               
               
               Conread position:50-316
               
               
               Cow position:chr3:76270073-76269817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:50-323
               
               
               Cow position:chr3:59299759-59299489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:205
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):13, 96

               
               
               Conread position:50-326
               
               
               Cow position:chr3:51608997-51609276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):19, 138

               
               
               Conread position:50-329
               
               
               Cow position:chr3:19900841-19900566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):199, 76

               
               
               Conread position:50-343
               
               
               Cow position:chr3:7763842-7763550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 24

               
               
               Conread position:50-343
               
               
               Cow position:chr3:45211490-45211188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:50-347
               
               
               Cow position:chr3:55124099-55124395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:50-348
               
               
               Cow position:chr3:21866853-21867149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):97, 67

               
               
               Conread position:50-348
               
               
               Cow position:chr3:51403080-51402797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):47, 7

               
               
               Conread position:50-352
               
               
               Cow position:chr3:59605028-59604735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 103

               
               
               Conread position:50-372
               
               
               Cow position:chr3:72342433-72342109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):96, 133

               
               
               Conread position:50-373
               
               
               Cow position:chr3:14553057-14552742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 72

               
               
               Conread position:50-374
               
               
               Cow position:chr3:5696544-5696867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):89, 63

               
               
               Conread position:50-378
               
               
               Cow position:chr3:26982235-26981925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):5, 37

               
               
               Conread position:50-378
               
               
               Cow position:chr3:54551526-54551865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):103, 14

               
               
               Conread position:50-378
               
               
               Cow position:chr3:55819932-55819609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):214, 13

               
               
               Conread position:50-379
               
               
               Cow position:chr3:33330019-33329671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):76, 150

               
               
               Conread position:50-380
               
               
               Cow position:chr3:22232483-22232795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 42

               
               
               Conread position:50-382
               
               
               Cow position:chr3:55177565-55177898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 77

               
               
               Conread position:50-382
               
               
               Cow position:chr3:66631159-66631503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 7

               
               
               Conread position:50-382
               
               
               Cow position:chr3:75480184-75479857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 82

               
               
               Conread position:50-383
               
               
               Cow position:chr3:31309169-31309501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):97, 41

               
               
               Conread position:50-383
               
               
               Cow position:chr3:53738998-53739332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):60, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr3:14601526-14601860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:50-384
               
               
               Cow position:chr3:15057457-15057754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:50-384
               
               
               Cow position:chr3:15388405-15388068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 42

               
               
               Conread position:50-384
               
               
               Cow position:chr3:20663358-20663681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):93, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr3:23168883-23169213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 41

               
               
               Conread position:50-384
               
               
               Cow position:chr3:27274713-27274384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 96

               
               
               Conread position:50-384
               
               
               Cow position:chr3:27696780-27697126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr3:29813413-29813097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):11, 74

               
               
               Conread position:50-384
               
               
               Cow position:chr3:44837181-44837528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):87, 273

               
               
               Conread position:50-384
               
               
               Cow position:chr3:48810451-48810784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):10, 235

               
               
               Conread position:50-384
               
               
               Cow position:chr3:49118845-49119174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):94, 128

               
               
               Conread position:50-384
               
               
               Cow position:chr3:54946306-54945981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 36

               
               
               Conread position:50-384
               
               
               Cow position:chr3:57764398-57764080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):104, 45

               
               
               Conread position:50-384
               
               
               Cow position:chr3:62046858-62046515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):11, 232

               
               
               Conread position:50-384
               
               
               Cow position:chr3:71247199-71246877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:50-384
               
               
               Cow position:chr3:73764030-73764343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):214, 72

               
               
               Conread position:50-384
               
               
               Cow position:chr3:75080937-75080623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 60

               
               
               Conread position:50-384
               
               
               Cow position:chr3:76713126-76713473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:252
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):16, 194

               
               
               Conread position:50-384
               
               
               Cow position:chr3:77188625-77188290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):99, 136

               
               
               Conread position:50-385
               
               
               Cow position:chr3:83474939-83474597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):93, 244

               
               
               Conread position:50-387
               
               
               Cow position:chr3:43233688-43233357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):113, 77

               
               
               Conread position:50-394
               
               
               Cow position:chr3:14465530-14465872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):216, 41

               
               
               Conread position:51-275
               
               
               Cow position:chr3:71703643-71703438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):10, 34

               
               
               Conread position:51-382
               
               
               Cow position:chr3:71238337-71238011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):11, 91

               
               
               Conread position:51-382
               
               
               Cow position:chr3:79093875-79094193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):12, 42

               
               
               Conread position:51-383
               
               
               Cow position:chr3:83454972-83455294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):15, 36

               
               
               Conread position:51-384
               
               
               Cow position:chr3:8061304-8060980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 44

               
               
               Conread position:51-384
               
               
               Cow position:chr3:13353548-13353214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 173

               
               
               Conread position:51-384
               
               
               Cow position:chr3:23471276-23471611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):15, 74

               
               
               Conread position:51-384
               
               
               Cow position:chr3:57274242-57273919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 51

               
               
               Conread position:52-215
               
               
               Cow position:chr3:22903575-22903732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:52-257
               
               
               Cow position:chr3:31115097-31115291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:52-257
               
               
               Cow position:chr3:75966600-75966802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:52-305
               
               
               Cow position:chr3:13240891-13241149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:52-378
               
               
               Cow position:chr3:71231581-71231258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 168

               
               
               Conread position:52-379
               
               
               Cow position:chr3:2392787-2393105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):150, 13

               
               
               Conread position:52-384
               
               
               Cow position:chr3:7337604-7337917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:52-384
               
               
               Cow position:chr3:9641737-9641418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 12

               
               
               Conread position:52-384
               
               
               Cow position:chr3:12978431-12978764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):17, 126

               
               
               Conread position:52-384
               
               
               Cow position:chr3:68156911-68156591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 44

               
               
               Conread position:52-384
               
               
               Cow position:chr3:74754498-74754181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):250, 69

               
               
               Conread position:53-230
               
               
               Cow position:chr3:4518000-4518177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 105

               
               
               Conread position:53-247
               
               
               Cow position:chr3:21694411-21694211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):7, 65

               
               
               Conread position:53-249
               
               
               Cow position:chr3:23640522-23640330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 76

               
               
               Conread position:53-267
               
               
               Cow position:chr3:64909913-64910125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):191, 179

               
               
               Conread position:53-272
               
               
               Cow position:chr3:11229188-11229402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):13, 34

               
               
               Conread position:53-272
               
               
               Cow position:chr3:79271528-79271749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:53-273
               
               
               Cow position:chr3:83770915-83770693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:53-274
               
               
               Cow position:chr3:15973753-15973527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 136

               
               
               Conread position:53-282
               
               
               Cow position:chr3:8349389-8349612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):185, 32

               
               
               Conread position:53-283
               
               
               Cow position:chr3:5305985-5305750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):83, 39

               
               
               Conread position:53-289
               
               
               Cow position:chr3:5040120-5040361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):14, 179

               
               
               Conread position:53-303
               
               
               Cow position:chr3:59933562-59933303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):80, 238

               
               
               Conread position:53-321
               
               
               Cow position:chr3:64197006-64196739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 11

               
               
               Conread position:53-330
               
               
               Cow position:chr3:79813800-79813512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:53-332
               
               
               Cow position:chr3:32310232-32310515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:53-335
               
               
               Cow position:chr3:75777887-75778160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):165, 69

               
               
               Conread position:53-342
               
               
               Cow position:chr3:59945311-59945020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 102

               
               
               Conread position:53-346
               
               
               Cow position:chr3:44234889-44234610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):84, 69

               
               
               Conread position:53-355
               
               
               Cow position:chr3:80740734-80740445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):211, 11

               
               
               Conread position:53-365
               
               
               Cow position:chr3:54739718-54740017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):188, 40

               
               
               Conread position:53-377
               
               
               Cow position:chr3:4050363-4050054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):59, 70

               
               
               Conread position:53-378
               
               
               Cow position:chr3:13890665-13890334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):33, 251

               
               
               Conread position:53-378
               
               
               Cow position:chr3:17331901-17331585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 61

               
               
               Conread position:53-378
               
               
               Cow position:chr3:48900147-48900479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):13, 181

               
               
               Conread position:53-379
               
               
               Cow position:chr3:70333787-70334106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):93, 115

               
               
               Conread position:53-383
               
               
               Cow position:chr3:3883638-3883965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 93

               
               
               Conread position:53-383
               
               
               Cow position:chr3:64280757-64281078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 12

               
               
               Conread position:53-384
               
               
               Cow position:chr3:4461308-4461638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):212, 38

               
               
               Conread position:53-384
               
               
               Cow position:chr3:15051769-15052099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 107

               
               
               Conread position:53-384
               
               
               Cow position:chr3:24852407-24852730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 38

               
               
               Conread position:53-384
               
               
               Cow position:chr3:26904281-26903968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):118, 68

               
               
               Conread position:53-384
               
               
               Cow position:chr3:30940988-30940668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):8, 34

               
               
               Conread position:53-384
               
               
               Cow position:chr3:39969681-39970015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 92

               
               
               Conread position:53-384
               
               
               Cow position:chr3:59597355-59597036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:53-384
               
               
               Cow position:chr3:61893999-61894317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):7, 35

               
               
               Conread position:53-384
               
               
               Cow position:chr3:78077373-78077046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:53-394
               
               
               Cow position:chr3:3649057-3649374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):328, 68

               
               
               Conread position:54-183
               
               
               Cow position:chr3:61190352-61190478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:54-238
               
               
               Cow position:chr3:24220399-24220580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:54-317
               
               
               Cow position:chr3:54067977-54067711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 39

               
               
               Conread position:54-325
               
               
               Cow position:chr3:31349928-31350194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):210, 17

               
               
               Conread position:54-328
               
               
               Cow position:chr3:81087456-81087724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):90, 20

               
               
               Conread position:54-342
               
               
               Cow position:chr3:3316627-3316918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 166

               
               
               Conread position:54-343
               
               
               Cow position:chr3:31361604-31361312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):186, 75

               
               
               Conread position:54-351
               
               
               Cow position:chr3:45700983-45700692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):113, 91

               
               
               Conread position:54-378
               
               
               Cow position:chr3:17957642-17957324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):134, 73

               
               
               Conread position:54-378
               
               
               Cow position:chr3:47417390-47417707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):228, 181

               
               
               Conread position:54-384
               
               
               Cow position:chr3:16752073-16752400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):90, 172

               
               
               Conread position:54-384
               
               
               Cow position:chr3:25477973-25477669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):208, 86

               
               
               Conread position:54-384
               
               
               Cow position:chr3:36418306-36418613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:54-384
               
               
               Cow position:chr3:52608354-52608040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 21

               
               
               Conread position:54-384
               
               
               Cow position:chr3:67744459-67744770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):15, 38

               
               
               Conread position:54-384
               
               
               Cow position:chr3:77365111-77365446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):93, 31

               
               
               Conread position:55-233
               
               
               Cow position:chr3:43895883-43896057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:55-287
               
               
               Cow position:chr3:44960838-44961056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):210, 59

               
               
               Conread position:55-383
               
               
               Cow position:chr3:48363249-48362938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):209, 86

               
               
               Conread position:55-384
               
               
               Cow position:chr3:11987510-11987180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 93

               
               
               Conread position:55-384
               
               
               Cow position:chr3:23105185-23105513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 73

               
               
               Conread position:55-384
               
               
               Cow position:chr3:51233924-51234244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):211, 63

               
               
               Conread position:55-384
               
               
               Cow position:chr3:54506886-54506562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 97

               
               
               Conread position:56-216
               
               
               Cow position:chr3:49787735-49787578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):108, 71

               
               
               Conread position:56-221
               
               
               Cow position:chr3:77665375-77665536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):64, 85

               
               
               Conread position:56-245
               
               
               Cow position:chr3:22868537-22868729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:56-272
               
               
               Cow position:chr3:54905785-54905581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):208, 65

               
               
               Conread position:56-282
               
               
               Cow position:chr3:75107951-75107727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 77

               
               
               Conread position:56-294
               
               
               Cow position:chr3:49344871-49344634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):99, 29

               
               
               Conread position:56-378
               
               
               Cow position:chr3:44102148-44101830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):32, 90

               
               
               Conread position:56-382
               
               
               Cow position:chr3:54781814-54782162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):65, 122

               
               
               Conread position:56-384
               
               
               Cow position:chr3:2506296-2506624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):17, 143

               
               
               Conread position:56-384
               
               
               Cow position:chr3:11063542-11063235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):20, 40

               
               
               Conread position:56-384
               
               
               Cow position:chr3:38864298-38863968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 66

               
               
               Conread position:57-247
               
               
               Cow position:chr3:41510756-41510565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:57-257
               
               
               Cow position:chr3:8522976-8523171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):70, 90

               
               
               Conread position:57-258
               
               
               Cow position:chr3:77171496-77171293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):90, 130

               
               
               Conread position:57-262
               
               
               Cow position:chr3:46559538-46559741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:57-262
               
               
               Cow position:chr3:67407189-67407392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:57-272
               
               
               Cow position:chr3:41863800-41863587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):208, 71

               
               
               Conread position:57-272
               
               
               Cow position:chr3:74644738-74644520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):87, 187

               
               
               Conread position:57-282
               
               
               Cow position:chr3:3947214-3946991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):68, 30

               
               
               Conread position:57-289
               
               
               Cow position:chr3:6182055-6182276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):207, 13

               
               
               Conread position:57-289
               
               
               Cow position:chr3:59920219-59919977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):69, 206

               
               
               Conread position:57-324
               
               
               Cow position:chr3:63845118-63844841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):90, 130

               
               
               Conread position:57-326
               
               
               Cow position:chr3:31804592-31804851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):168, 70

               
               
               Conread position:57-355
               
               
               Cow position:chr3:19711159-19711453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):98, 22

               
               
               Conread position:57-378
               
               
               Cow position:chr3:5365843-5365536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):248, 70

               
               
               Conread position:57-378
               
               
               Cow position:chr3:76267795-76268120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:57-382
               
               
               Cow position:chr3:60264544-60264860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 23

               
               
               Conread position:57-383
               
               
               Cow position:chr3:26066165-26065857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):40, 80

               
               
               Conread position:57-383
               
               
               Cow position:chr3:54435146-54434829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):207, 86

               
               
               Conread position:57-383
               
               
               Cow position:chr3:82019664-82019985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:231
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):207, 69

               
               
               Conread position:57-384
               
               
               Cow position:chr3:18687079-18686760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):207, 71

               
               
               Conread position:57-384
               
               
               Cow position:chr3:48072708-48073021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 34

               
               
               Conread position:57-384
               
               
               Cow position:chr3:58764908-58765224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):207, 71

               
               
               Conread position:57-384
               
               
               Cow position:chr3:59474298-59473973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):87, 65

               
               
               Conread position:57-384
               
               
               Cow position:chr3:65413088-65413427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):32, 111

               
               
               Conread position:57-384
               
               
               Cow position:chr3:70761945-70762270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 96

               
               
               Conread position:57-392
               
               
               Cow position:chr3:22221504-22221163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):207, 105

               
               
               Conread position:58-224
               
               
               Cow position:chr3:3453759-3453591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:58-246
               
               
               Cow position:chr3:562612-562804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:58-246
               
               
               Cow position:chr3:19611176-19611360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:58-265
               
               
               Cow position:chr3:52845732-52845522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 88

               
               
               Conread position:58-267
               
               
               Cow position:chr3:48483354-48483146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):88, 12

               
               
               Conread position:58-343
               
               
               Cow position:chr3:17694825-17695111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):88, 118

               
               
               Conread position:58-345
               
               
               Cow position:chr3:65019676-65019974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 238

               
               
               Conread position:58-377
               
               
               Cow position:chr3:65058876-65058563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):26, 94

               
               
               Conread position:58-382
               
               
               Cow position:chr3:83441716-83442027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:58-384
               
               
               Cow position:chr3:3032586-3032257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):83, 112

               
               
               Conread position:58-384
               
               
               Cow position:chr3:38035411-38035739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):96, 126

               
               
               Conread position:58-384
               
               
               Cow position:chr3:45667166-45667500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):98, 69

               
               
               Conread position:58-384
               
               
               Cow position:chr3:52651903-52652222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):155, 93

               
               
               Conread position:58-384
               
               
               Cow position:chr3:53790365-53790684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 47

               
               
               Conread position:58-384
               
               
               Cow position:chr3:61857685-61857353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):111, 15

               
               
               Conread position:58-384
               
               
               Cow position:chr3:63316304-63315988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):207, 117

               
               
               Conread position:58-384
               
               
               Cow position:chr3:80072320-80071979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):86, 47

               
               
               Conread position:58-422
               
               
               Cow position:chr3:7662035-7661667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):10, 168

               
               
               Conread position:59-180
               
               
               Cow position:chr3:3887463-3887584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-214
               
               
               Cow position:chr3:16867999-16867845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):97, 112

               
               
               Conread position:59-215
               
               
               Cow position:chr3:22078254-22078096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:59-224
               
               
               Cow position:chr3:12090853-12090685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 130

               
               
               Conread position:59-225
               
               
               Cow position:chr3:77098648-77098812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:59-231
               
               
               Cow position:chr3:11023630-11023449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):61, 115

               
               
               Conread position:59-247
               
               
               Cow position:chr3:54350258-54350452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):67, 113

               
               
               Conread position:59-247
               
               
               Cow position:chr3:78258574-78258766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):71, 121

               
               
               Conread position:59-248
               
               
               Cow position:chr3:64800371-64800562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):118, 67

               
               
               Conread position:59-252
               
               
               Cow position:chr3:61680493-61680301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):87, 119

               
               
               Conread position:59-258
               
               
               Cow position:chr3:59681731-59681926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:59-262
               
               
               Cow position:chr3:18479120-18479324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):87, 119

               
               
               Conread position:59-274
               
               
               Cow position:chr3:75173424-75173619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):205, 32

               
               
               Conread position:59-282
               
               
               Cow position:chr3:23131992-23132216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 0

               
               
               Conread position:59-283
               
               
               Cow position:chr3:2638109-2637878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:59-348
               
               
               Cow position:chr3:15950741-15951023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:59-350
               
               
               Cow position:chr3:4268398-4268696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):90, 122

               
               
               Conread position:59-366
               
               
               Cow position:chr3:35055800-35056108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):90, 108

               
               
               Conread position:59-366
               
               
               Cow position:chr3:42796342-42796638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):90, 106

               
               
               Conread position:59-368
               
               
               Cow position:chr3:64527022-64526716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):95, 19

               
               
               Conread position:59-372
               
               
               Cow position:chr3:18180139-18179810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):61, 121

               
               
               Conread position:59-373
               
               
               Cow position:chr3:53209832-53210157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:59-376
               
               
               Cow position:chr3:15228665-15228958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):205, 44

               
               
               Conread position:59-378
               
               
               Cow position:chr3:33252716-33253018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:59-382
               
               
               Cow position:chr3:18459361-18459667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):105, 32

               
               
               Conread position:59-383
               
               
               Cow position:chr3:19586040-19585715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 163

               
               
               Conread position:59-383
               
               
               Cow position:chr3:78092335-78092652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 95

               
               
               Conread position:59-384
               
               
               Cow position:chr3:189051-188713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):17, 11

               
               
               Conread position:59-384
               
               
               Cow position:chr3:17456091-17456412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):99, 133

               
               
               Conread position:59-384
               
               
               Cow position:chr3:18393224-18393535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):13, 70

               
               
               Conread position:59-384
               
               
               Cow position:chr3:23920250-23920577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):68, 106

               
               
               Conread position:59-384
               
               
               Cow position:chr3:24468208-24468526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):87, 35

               
               
               Conread position:59-384
               
               
               Cow position:chr3:36569862-36570193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):75, 39

               
               
               Conread position:59-384
               
               
               Cow position:chr3:38828927-38828620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):311, 46

               
               
               Conread position:59-384
               
               
               Cow position:chr3:55189574-55189903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 309

               
               
               Conread position:59-438
               
               
               Cow position:chr3:58317767-58318151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):79, 304

               
               
               Conread position:60-216
               
               
               Cow position:chr3:621616-621454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:60-220
               
               
               Cow position:chr3:2637120-2636965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:60-229
               
               
               Cow position:chr3:26393124-26393293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):98, 64

               
               
               Conread position:60-240
               
               
               Cow position:chr3:66884855-66885031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:60-244
               
               
               Cow position:chr3:29234503-29234690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):87, 26

               
               
               Conread position:60-245
               
               
               Cow position:chr3:19709280-19709101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:60-249
               
               
               Cow position:chr3:76168454-76168645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):86, 127

               
               
               Conread position:60-258
               
               
               Cow position:chr3:59947843-59947643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):74, 111

               
               
               Conread position:60-262
               
               
               Cow position:chr3:45314527-45314318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:60-272
               
               
               Cow position:chr3:61023846-61024060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):87, 10

               
               
               Conread position:60-274
               
               
               Cow position:chr3:11281944-11281727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):101, 118

               
               
               Conread position:60-293
               
               
               Cow position:chr3:83699693-83699925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):104, 125

               
               
               Conread position:60-297
               
               
               Cow position:chr3:68303493-68303253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):86, 128

               
               
               Conread position:60-304
               
               
               Cow position:chr3:49996542-49996793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:60-316
               
               
               Cow position:chr3:27976347-27976606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):57, 70

               
               
               Conread position:60-331
               
               
               Cow position:chr3:4549192-4548920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):204, 34

               
               
               Conread position:60-331
               
               
               Cow position:chr3:47753412-47753129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:60-352
               
               
               Cow position:chr3:37041591-37041299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):94, 26

               
               
               Conread position:60-378
               
               
               Cow position:chr3:21112467-21112783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):104, 116

               
               
               Conread position:60-380
               
               
               Cow position:chr3:68648352-68648021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):86, 111

               
               
               Conread position:60-382
               
               
               Cow position:chr3:53875587-53875904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):89, 227

               
               
               Conread position:60-383
               
               
               Cow position:chr3:32585328-32585007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):42, 90

               
               
               Conread position:60-383
               
               
               Cow position:chr3:54373682-54374006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 127

               
               
               Conread position:60-384
               
               
               Cow position:chr3:7330963-7331260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):204, 32

               
               
               Conread position:60-384
               
               
               Cow position:chr3:9662994-9663319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):86, 225

               
               
               Conread position:60-384
               
               
               Cow position:chr3:20257395-20257057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):180, 96

               
               
               Conread position:60-384
               
               
               Cow position:chr3:23408189-23408499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 35

               
               
               Conread position:60-384
               
               
               Cow position:chr3:44932687-44932365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 96

               
               
               Conread position:60-384
               
               
               Cow position:chr3:53222187-53221867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 92

               
               
               Conread position:60-384
               
               
               Cow position:chr3:59610544-59610868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 88

               
               
               Conread position:60-384
               
               
               Cow position:chr3:61224574-61224889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):204, 67

               
               
               Conread position:60-384
               
               
               Cow position:chr3:70609800-70609479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 47

               
               
               Conread position:60-384
               
               
               Cow position:chr3:73395290-73394973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):204, 53

               
               
               Conread position:60-384
               
               
               Cow position:chr3:75687262-75687586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):94, 35

               
               
               Conread position:60-403
               
               
               Cow position:chr3:74584365-74584050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):204, 62

               
               
               Conread position:60-411
               
               
               Cow position:chr3:81039571-81039922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:247
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):43, 26

               
               
               Conread position:61-262
               
               
               Cow position:chr3:15160691-15160494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:61-274
               
               
               Cow position:chr3:39996720-39996930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):110, 9

               
               
               Conread position:61-382
               
               
               Cow position:chr3:49328108-49327796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:61-384
               
               
               Cow position:chr3:20674705-20675022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):72, 30

               
               
               Conread position:62-233
               
               
               Cow position:chr3:34164115-34164281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):121, 92

               
               
               Conread position:62-331
               
               
               Cow position:chr3:49363280-49363020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):92, 60

               
               
               Conread position:62-377
               
               
               Cow position:chr3:78093220-78093524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 33

               
               
               Conread position:62-378
               
               
               Cow position:chr3:59040743-59040426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):87, 110

               
               
               Conread position:62-384
               
               
               Cow position:chr3:65237196-65236876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):202, 83

               
               
               Conread position:62-384
               
               
               Cow position:chr3:68616162-68616472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 80

               
               
               Conread position:62-384
               
               
               Cow position:chr3:76922500-76922810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:62-385
               
               
               Cow position:chr3:10958071-10958392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 30

               
               
               Conread position:63-265
               
               
               Cow position:chr3:20021440-20021240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:63-363
               
               
               Cow position:chr3:21014784-21015087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):86, 31

               
               
               Conread position:63-378
               
               
               Cow position:chr3:59035215-59034896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):106, 63

               
               
               Conread position:64-328
               
               
               Cow position:chr3:75608659-75608405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):200, 63

               
               
               Conread position:64-329
               
               
               Cow position:chr3:14547170-14546909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):200, 62

               
               
               Conread position:64-365
               
               
               Cow position:chr3:17058376-17058669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:64-369
               
               
               Cow position:chr3:64010637-64010955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 121

               
               
               Conread position:64-380
               
               
               Cow position:chr3:74533505-74533209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):202, 57

               
               
               Conread position:64-382
               
               
               Cow position:chr3:53150504-53150183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 228

               
               
               Conread position:64-384
               
               
               Cow position:chr3:26970982-26970680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:64-384
               
               
               Cow position:chr3:60597708-60597395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):101, 78

               
               
               Conread position:64-384
               
               
               Cow position:chr3:70896210-70895903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):36, 44

               
               
               Conread position:64-384
               
               
               Cow position:chr3:75158526-75158212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):85, 27

               
               
               Conread position:64-388
               
               
               Cow position:chr3:3889406-3889719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):190, 63

               
               
               Conread position:65-315
               
               
               Cow position:chr3:10668709-10668958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 79

               
               
               Conread position:65-384
               
               
               Cow position:chr3:15159202-15158894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):63, 24

               
               
               Conread position:65-384
               
               
               Cow position:chr3:45647836-45647533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):32, 64

               
               
               Conread position:65-384
               
               
               Cow position:chr3:63269404-63269076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):41, 109

               
               
               Conread position:67-325
               
               
               Cow position:chr3:84250381-84250633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):184, 60

               
               
               Conread position:67-340
               
               
               Cow position:chr3:75238628-75238354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):80, 110

               
               
               Conread position:68-384
               
               
               Cow position:chr3:58540350-58540676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):76, 130

               
               
               Conread position:69-252
               
               
               Cow position:chr3:62370223-62370039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):81, 118

               
               
               Conread position:69-261
               
               
               Cow position:chr3:82195650-82195461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:69-282
               
               
               Cow position:chr3:26603380-26603602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:69-384
               
               
               Cow position:chr3:49679300-49678978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):78, 119

               
               
               Conread position:69-384
               
               
               Cow position:chr3:53270999-53270681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):78, 108

               
               
               Conread position:71-255
               
               
               Cow position:chr3:40145631-40145445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):78, 107

               
               
               Conread position:71-318
               
               
               Cow position:chr3:53083819-53084070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):62, 241

               
               
               Conread position:71-368
               
               
               Cow position:chr3:66900563-66900867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):73, 15

               
               
               Conread position:71-384
               
               
               Cow position:chr3:74079474-74079786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 80

               
               
               Conread position:72-220
               
               
               Cow position:chr3:10115458-10115314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:72-282
               
               
               Cow position:chr3:1028484-1028693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):92, 104

               
               
               Conread position:72-361
               
               
               Cow position:chr3:59000600-59000876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):203, 56

               
               
               Conread position:72-376
               
               
               Cow position:chr3:57577859-57577560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):187, 33

               
               
               Conread position:72-379
               
               
               Cow position:chr3:53046495-53046799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):66, 164

               
               
               Conread position:72-383
               
               
               Cow position:chr3:34871731-34871422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):74, 120

               
               
               Conread position:72-383
               
               
               Cow position:chr3:69416615-69416930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):54, 121

               
               
               Conread position:72-384
               
               
               Cow position:chr3:2036467-2036151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):170, 77

               
               
               Conread position:72-384
               
               
               Cow position:chr3:19793427-19793740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):91, 103

               
               
               Conread position:72-384
               
               
               Cow position:chr3:55434494-55434180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):105, 72

               
               
               Conread position:73-363
               
               
               Cow position:chr3:13380116-13380413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):119, 65

               
               
               Conread position:73-384
               
               
               Cow position:chr3:7566259-7566567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):103, 65

               
               
               Conread position:73-384
               
               
               Cow position:chr3:74119268-74119589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):91, 21

               
               
               Conread position:74-332
               
               
               Cow position:chr3:18607824-18607566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):190, 53

               
               
               Conread position:74-368
               
               
               Cow position:chr3:70334531-70334826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):90, 213

               
               
               Conread position:74-384
               
               
               Cow position:chr3:56612523-56612212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):92, 22

               
               
               Conread position:74-384
               
               
               Cow position:chr3:79196924-79196612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 242

               
               
               Conread position:75-230
               
               
               Cow position:chr3:5737906-5737757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:75-237
               
               
               Cow position:chr3:17531576-17531739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:75-277
               
               
               Cow position:chr3:70756479-70756683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 81

               
               
               Conread position:76-384
               
               
               Cow position:chr3:68627528-68627828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 131

               
               
               Conread position:79-364
               
               
               Cow position:chr3:56678191-56678481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 97

               
               
               Conread position:80-270
               
               
               Cow position:chr3:35239166-35238979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):42, 50

               
               
               Conread position:80-294
               
               
               Cow position:chr3:74787581-74787372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:80-324
               
               
               Cow position:chr3:1889951-1890200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 107

               
               
               Conread position:82-384
               
               
               Cow position:chr3:60265100-60265389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):182, 143

               
               
               Conread position:83-280
               
               
               Cow position:chr3:82123401-82123593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):181, 16

               
               
               Conread position:86-387
               
               
               Cow position:chr3:25945244-25944931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):58, 26

               
               
               Conread position:87-384
               
               
               Cow position:chr3:23877148-23876847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 22

               
               
               Conread position:87-384
               
               
               Cow position:chr3:74134855-74134558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):52, 29

               
               
               Conread position:89-260
               
               
               Cow position:chr3:19788685-19788854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:89-377
               
               
               Cow position:chr3:72391234-72390945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):48, 201

               
               
               Conread position:90-378
               
               
               Cow position:chr3:73820217-73820511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):49, 208

               
               
               Conread position:93-251
               
               
               Cow position:chr3:28870949-28870792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:95-378
               
               
               Cow position:chr3:53572609-53572891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):34, 55

               
               
               Conread position:98-252
               
               
               Cow position:chr3:25037857-25038008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:98-373
               
               
               Cow position:chr3:6690140-6689865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 79

               
               
               Conread position:98-378
               
               
               Cow position:chr3:38783745-38783475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 78

               
               
               Conread position:98-383
               
               
               Cow position:chr3:15751577-15751868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 27

               
               
               Conread position:99-329
               
               
               Cow position:chr3:32409356-32409118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:100-384
               
               
               Cow position:chr3:70565599-70565885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:102-339
               
               
               Cow position:chr3:19626374-19626612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):51, 87

               
               
               Conread position:107-384
               
               
               Cow position:chr3:73709175-73708901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):156, 54

               
               
               Conread position:112-384
               
               
               Cow position:chr3:79645304-79645591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 42

               
               
               Conread position:113-384
               
               
               Cow position:chr3:82461298-82461030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):154, 30

               
               
               Conread position:117-343
               
               
               Cow position:chr3:73461083-73460857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):147, 29

               
               
               Conread position:123-384
               
               
               Cow position:chr3:24935477-24935223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):141, 36

               
               
               Conread position:128-282
               
               
               Cow position:chr3:20334115-20333960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:128-286
               
               
               Cow position:chr3:38100249-38100090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):83, 19

               
               
               Conread position:128-368
               
               
               Cow position:chr3:22510133-22509895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 59

               
               
               Conread position:128-383
               
               
               Cow position:chr3:17934833-17935080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):136, 19

               
               
               Conread position:128-383
               
               
               Cow position:chr3:57760604-57760352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):136, 33

               
               
               Conread position:128-384
               
               
               Cow position:chr3:3738587-3738341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-384
               
               
               Cow position:chr3:15506555-15506304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:192
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):136, 23

               
               
               Conread position:128-384
               
               
               Cow position:chr3:73442990-73443234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:195
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-384
               
               
               Cow position:chr3:74243098-74242848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):138, 24

               
               
               Conread position:129-257
               
               
               Cow position:chr3:76415795-76415924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:129-300
               
               
               Cow position:chr3:21997683-21997851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:129-307
               
               
               Cow position:chr3:74801961-74802139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:129-324
               
               
               Cow position:chr3:74900536-74900726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):135, 50

               
               
               Conread position:129-378
               
               
               Cow position:chr3:14263501-14263253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):15, 56

               
               
               Conread position:129-383
               
               
               Cow position:chr3:12711808-12712065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:129-383
               
               
               Cow position:chr3:62789070-62789326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:191
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:129-384
               
               
               Cow position:chr3:13507573-13507319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:129-384
               
               
               Cow position:chr3:52863074-52863332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 155

               
               
               Conread position:129-384
               
               
               Cow position:chr3:56059916-56059659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 22

               
               
               Conread position:130-384
               
               
               Cow position:chr3:45648236-45647985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):139, 92

               
               
               Conread position:130-384
               
               
               Cow position:chr3:67704652-67704395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:131-282
               
               
               Cow position:chr3:82629420-82629269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):133, 30

               
               
               Conread position:131-316
               
               
               Cow position:chr3:4481045-4480860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):133, 15

               
               
               Conread position:131-321
               
               
               Cow position:chr3:22716193-22716386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):61, 22

               
               
               Conread position:131-329
               
               
               Cow position:chr3:15173186-15172987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):133, 194

               
               
               Conread position:131-344
               
               
               Cow position:chr3:54290407-54290623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:131-345
               
               
               Cow position:chr3:55984203-55983986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):133, 78

               
               
               Conread position:131-355
               
               
               Cow position:chr3:33693922-33693699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:131-360
               
               
               Cow position:chr3:10104143-10103924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:131-363
               
               
               Cow position:chr3:35621405-35621176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):136, 20

               
               
               Conread position:131-366
               
               
               Cow position:chr3:70402001-70401772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):133, 91

               
               
               Conread position:131-368
               
               
               Cow position:chr3:59621543-59621776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):129, 154

               
               
               Conread position:131-368
               
               
               Cow position:chr3:84175719-84175957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:131-373
               
               
               Cow position:chr3:32457296-32457064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:131-380
               
               
               Cow position:chr3:1785139-1785385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):23, 155

               
               
               Conread position:131-382
               
               
               Cow position:chr3:55835717-55835970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:131-384
               
               
               Cow position:chr3:2680618-2680369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):129, 87

               
               
               Conread position:131-384
               
               
               Cow position:chr3:17447510-17447756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):132, 90

               
               
               Conread position:131-384
               
               
               Cow position:chr3:26874696-26874442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):23, 108

               
               
               Conread position:131-384
               
               
               Cow position:chr3:50069868-50069617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):135, 121

               
               
               Conread position:131-384
               
               
               Cow position:chr3:53508714-53508474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):133, 15

               
               
               Conread position:131-384
               
               
               Cow position:chr3:67930082-67930329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):133, 67

               
               
               Conread position:131-384
               
               
               Cow position:chr3:70899995-70899748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 36

               
               
               Conread position:131-411
               
               
               Cow position:chr3:48296803-48296535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):266, 94

               
               
               Conread position:132-294
               
               
               Cow position:chr3:64648594-64648434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:132-319
               
               
               Cow position:chr3:44330335-44330521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:132-352
               
               
               Cow position:chr3:63177586-63177363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):131, 26

               
               
               Conread position:132-378
               
               
               Cow position:chr3:57624566-57624324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):132, 14

               
               
               Conread position:132-378
               
               
               Cow position:chr3:80053440-80053680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):132, 19

               
               
               Conread position:132-384
               
               
               Cow position:chr3:20677740-20677982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:132-384
               
               
               Cow position:chr3:49790706-49790958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 143

               
               
               Conread position:132-384
               
               
               Cow position:chr3:59883964-59884220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):12, 52

               
               
               Conread position:132-384
               
               
               Cow position:chr3:67543764-67544016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):17, 56

               
               
               Conread position:132-384
               
               
               Cow position:chr3:80581759-80581516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):132, 90

               
               
               Conread position:132-387
               
               
               Cow position:chr3:5100670-5100917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):132, 14

               
               
               Conread position:133-347
               
               
               Cow position:chr3:6519866-6520084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):132, 51

               
               
               Conread position:133-384
               
               
               Cow position:chr3:14626049-14626305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:133-384
               
               
               Cow position:chr3:49650490-49650238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):33, 18

               
               
               Conread position:133-384
               
               
               Cow position:chr3:75045773-75046025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 91

               
               
               Conread position:134-384
               
               
               Cow position:chr3:116290-116050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):44, 10

               
               
               Conread position:134-427
               
               
               Cow position:chr3:72503796-72504083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 12

               
               
               Conread position:135-269
               
               
               Cow position:chr3:24372020-24371889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:136-384
               
               
               Cow position:chr3:55271947-55272194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 10

               
               
               Conread position:136-404
               
               
               Cow position:chr3:38691308-38691574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):113, 16

               
               
               Conread position:138-331
               
               
               Cow position:chr3:58767361-58767165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:141-332
               
               
               Cow position:chr3:64135813-64135619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:141-384
               
               
               Cow position:chr3:46541734-46541975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 157

               
               
               Conread position:141-384
               
               
               Cow position:chr3:69750617-69750848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):12, 29

               
               
               Conread position:143-384
               
               
               Cow position:chr3:79292920-79292682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):121, 8

               
               
               Conread position:145-384
               
               
               Cow position:chr3:28908112-28908349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:145-384
               
               
               Cow position:chr3:66292086-66292324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:181
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):119, 6

               
               
               Conread position:146-297
               
               
               Cow position:chr3:51349913-51349761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:146-316
               
               
               Cow position:chr3:3478165-3478336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:146-379
               
               
               Cow position:chr3:30222281-30222045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):90, 144

               
               
               Conread position:146-384
               
               
               Cow position:chr3:26960498-26960738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 47

               
               
               Conread position:146-384
               
               
               Cow position:chr3:62826529-62826766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):97, 65

               
               
               Conread position:146-385
               
               
               Cow position:chr3:34271004-34270767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 29

               
               
               Conread position:147-281
               
               
               Cow position:chr3:41652465-41652330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:147-332
               
               
               Cow position:chr3:3472129-3471942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:147-368
               
               
               Cow position:chr3:61116764-61116989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):117, 137

               
               
               Conread position:147-387
               
               
               Cow position:chr3:19006747-19006513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 73

               
               
               Conread position:147-442
               
               
               Cow position:chr3:74846620-74846913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):117, 130

               
               
               Conread position:148-267
               
               
               Cow position:chr3:16601530-16601411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:148-377
               
               
               Cow position:chr3:83815700-83815930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):116, 50

               
               
               Conread position:148-384
               
               
               Cow position:chr3:525434-525203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):148, 129

               
               
               Conread position:148-384
               
               
               Cow position:chr3:10347443-10347208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):38, 78

               
               
               Conread position:149-384
               
               
               Cow position:chr3:23444803-23445041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):115, 15

               
               
               Conread position:151-384
               
               
               Cow position:chr3:26920995-26920761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):45, 108

               
               
               Conread position:152-378
               
               
               Cow position:chr3:5097291-5097065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):112, 147

               
               
               Conread position:152-384
               
               
               Cow position:chr3:5374412-5374187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):112, 64

               
               
               Conread position:152-384
               
               
               Cow position:chr3:29887336-29887569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):98, 49

               
               
               Conread position:152-384
               
               
               Cow position:chr3:59799332-59799100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):112, 148

               
               
               Conread position:152-411
               
               
               Cow position:chr3:73915724-73915977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):203, 46

               
               
               Conread position:153-280
               
               
               Cow position:chr3:50593832-50593957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):112, 68

               
               
               Conread position:153-321
               
               
               Cow position:chr3:29828064-29828230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):43, 133

               
               
               Conread position:155-378
               
               
               Cow position:chr3:74502244-74502461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):109, 138

               
               
               Conread position:155-381
               
               
               Cow position:chr3:20993894-20993667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):141, 164

               
               
               Conread position:155-382
               
               
               Cow position:chr3:25755101-25754881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 57

               
               
               Conread position:155-384
               
               
               Cow position:chr3:8394023-8393789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:155-384
               
               
               Cow position:chr3:34669652-34669875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):148, 99

               
               
               Conread position:155-384
               
               
               Cow position:chr3:50614722-50614490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:155-384
               
               
               Cow position:chr3:53113256-53113026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):11, 20

               
               
               Conread position:155-408
               
               
               Cow position:chr3:55109532-55109789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:156-384
               
               
               Cow position:chr3:61840355-61840130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):110, 76

               
               
               Conread position:156-384
               
               
               Cow position:chr3:72676171-72675945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):109, 133

               
               
               Conread position:157-343
               
               
               Cow position:chr3:27545740-27545928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:158-384
               
               
               Cow position:chr3:45534218-45534443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):104, 67

               
               
               Conread position:159-384
               
               
               Cow position:chr3:26218974-26219197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):105, 127

               
               
               Conread position:161-364
               
               
               Cow position:chr3:56302-56504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):83, 66

               
               
               Conread position:161-384
               
               
               Cow position:chr3:3638253-3638039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):105, 57

               
               
               Conread position:161-384
               
               
               Cow position:chr3:58968828-58969047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):103, 124

               
               
               Conread position:161-384
               
               
               Cow position:chr3:59101902-59101681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):102, 71

               
               
               Conread position:161-384
               
               
               Cow position:chr3:76015367-76015143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):103, 150

               
               
               Conread position:162-384
               
               
               Cow position:chr3:7940483-7940703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):122, 70

               
               
               Conread position:163-384
               
               
               Cow position:chr3:75711379-75711164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):99, 114

               
               
               Conread position:165-384
               
               
               Cow position:chr3:26553644-26553863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):135, 98

               
               
               Conread position:168-324
               
               
               Cow position:chr3:70614419-70614574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):96, 54

               
               
               Conread position:173-348
               
               
               Cow position:chr3:12670552-12670725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):91, 31

               
               
               Conread position:174-319
               
               
               Cow position:chr3:478738-478883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):90, 48

               
               
               Conread position:174-384
               
               
               Cow position:chr3:39171423-39171630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 73

               
               
               Conread position:178-384
               
               
               Cow position:chr3:66609786-66609990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):88, 58

               
               
               Conread position:179-384
               
               
               Cow position:chr3:34937901-34937696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):67, 39

               
               
               Conread position:180-384
               
               
               Cow position:chr3:78896703-78896501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 114

               
               
               Conread position:181-384
               
               
               Cow position:chr3:81277637-81277846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):32, 110

               
               
               Conread position:182-332
               
               
               Cow position:chr3:54030335-54030183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):82, 112

               
               
               Conread position:185-383
               
               
               Cow position:chr3:31046901-31047097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):79, 38

               
               
               Conread position:187-378
               
               
               Cow position:chr3:11712014-11711820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:187-379
               
               
               Cow position:chr3:14632934-14633128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):77, 170

               
               
               Conread position:187-384
               
               
               Cow position:chr3:34294219-34294432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:187-384
               
               
               Cow position:chr3:65800634-65800448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 32

               
               
               Conread position:190-384
               
               
               Cow position:chr3:73759471-73759663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):76, 33

               
               
               Conread position:191-378
               
               
               Cow position:chr3:74878544-74878730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):73, 108

               
               
               Conread position:191-384
               
               
               Cow position:chr3:79092347-79092542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):61, 95

               
               
               Conread position:191-385
               
               
               Cow position:chr3:56523401-56523579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):73, 22

               
               
               Conread position:191-411
               
               
               Cow position:chr3:79270912-79271133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 107

               
               
               Conread position:193-384
               
               
               Cow position:chr3:22820614-22820421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):73, 25

               
               
               Conread position:194-343
               
               
               Cow position:chr3:75090518-75090369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 43

               
               
               Conread position:194-379
               
               
               Cow position:chr3:2216410-2216223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):60, 67

               
               
               Conread position:194-384
               
               
               Cow position:chr3:31206918-31206725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):72, 115

               
               
               Conread position:197-384
               
               
               Cow position:chr3:32183979-32184168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:200-384
               
               
               Cow position:chr3:36446682-36446864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 63

               
               
               Conread position:206-384
               
               
               Cow position:chr3:21340931-21341109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):60, 32

               
               
               Conread position:1-244
               
               
               Cow position:chr4:58045385-58045626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):135, 19

               
               
               Conread position:1-271
               
               
               Cow position:chr4:34983259-34983515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):263, 70

               
               
               Conread position:1-384
               
               
               Cow position:chr4:20026857-20027232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 51

               
               
               Conread position:1-384
               
               
               Cow position:chr4:54927176-54927571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 355

               
               
               Conread position:2-368
               
               
               Cow position:chr4:34383097-34383458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:2-379
               
               
               Cow position:chr4:10905196-10905591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:258
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:4-384
               
               
               Cow position:chr4:4320749-4321133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:268
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):218, 18

               
               
               Conread position:4-384
               
               
               Cow position:chr4:15905356-15904967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:262
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):34, 176

               
               
               Conread position:4-384
               
               
               Cow position:chr4:19435496-19435128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:5-373
               
               
               Cow position:chr4:52780094-52779732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):37, 15

               
               
               Conread position:5-378
               
               
               Cow position:chr4:47041168-47041546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):31, 272

               
               
               Conread position:6-230
               
               
               Cow position:chr4:46656378-46656152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:6-272
               
               
               Cow position:chr4:13919227-13918961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):54, 160

               
               
               Conread position:6-384
               
               
               Cow position:chr4:45250210-45249845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):141, 56

               
               
               Conread position:7-301
               
               
               Cow position:chr4:13131722-13131425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:197
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):139, 50

               
               
               Conread position:8-384
               
               
               Cow position:chr4:54191346-54190957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 12

               
               
               Conread position:12-383
               
               
               Cow position:chr4:16814630-16814261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:15-282
               
               
               Cow position:chr4:12048114-12047842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):172, 79

               
               
               Conread position:15-338
               
               
               Cow position:chr4:21866712-21866383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:18-381
               
               
               Cow position:chr4:31004176-31004536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 130

               
               
               Conread position:19-383
               
               
               Cow position:chr4:59785552-59785187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:255
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):152, 119

               
               
               Conread position:20-320
               
               
               Cow position:chr4:49800923-49800626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):40, 17

               
               
               Conread position:20-384
               
               
               Cow position:chr4:34022354-34022718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 108

               
               
               Conread position:21-384
               
               
               Cow position:chr4:13693444-13693805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 132

               
               
               Conread position:22-282
               
               
               Cow position:chr4:69497345-69497087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 9

               
               
               Conread position:23-249
               
               
               Cow position:chr4:25802922-25802691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:23-384
               
               
               Cow position:chr4:15635224-15635579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):237, 41

               
               
               Conread position:24-384
               
               
               Cow position:chr4:28839839-28839495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:25-230
               
               
               Cow position:chr4:47417640-47417435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 61

               
               
               Conread position:25-329
               
               
               Cow position:chr4:28841642-28841338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):104, 24

               
               
               Conread position:26-384
               
               
               Cow position:chr4:9137511-9137145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:244
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):14, 39

               
               
               Conread position:27-211
               
               
               Cow position:chr4:19496756-19496944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):95, 26

               
               
               Conread position:27-368
               
               
               Cow position:chr4:63713-64053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):16, 31

               
               
               Conread position:27-378
               
               
               Cow position:chr4:55270544-55270879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):120, 26

               
               
               Conread position:28-274
               
               
               Cow position:chr4:7698487-7698244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):136, 36

               
               
               Conread position:28-368
               
               
               Cow position:chr4:53126317-53126003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):236, 24

               
               
               Conread position:29-224
               
               
               Cow position:chr4:11186192-11185992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:29-265
               
               
               Cow position:chr4:8083584-8083811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):29, 8

               
               
               Conread position:29-347
               
               
               Cow position:chr4:3912380-3912715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):55, 35

               
               
               Conread position:29-384
               
               
               Cow position:chr4:22073093-22073447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):28, 166

               
               
               Conread position:29-384
               
               
               Cow position:chr4:45685669-45685337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):271, 18

               
               
               Conread position:30-247
               
               
               Cow position:chr4:3299577-3299784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):135, 108

               
               
               Conread position:30-247
               
               
               Cow position:chr4:35974595-35974368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):20, 156

               
               
               Conread position:30-282
               
               
               Cow position:chr4:11900926-11901185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 141

               
               
               Conread position:30-378
               
               
               Cow position:chr4:17832678-17833027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):117, 46

               
               
               Conread position:31-231
               
               
               Cow position:chr4:43579195-43579391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:31-238
               
               
               Cow position:chr4:56746214-56746004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):113, 157

               
               
               Conread position:31-255
               
               
               Cow position:chr4:53347764-53347972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):151, 12

               
               
               Conread position:31-271
               
               
               Cow position:chr4:39007717-39007489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:31-303
               
               
               Cow position:chr4:47125619-47125896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):125, 33

               
               
               Conread position:31-352
               
               
               Cow position:chr4:32694006-32693685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):204, 22

               
               
               Conread position:31-384
               
               
               Cow position:chr4:13043490-13043134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):96, 33

               
               
               Conread position:31-384
               
               
               Cow position:chr4:21391593-21391944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 102

               
               
               Conread position:31-384
               
               
               Cow position:chr4:46393657-46393304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:32-271
               
               
               Cow position:chr4:61608751-61608984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):232, 21

               
               
               Conread position:32-383
               
               
               Cow position:chr4:19700328-19699976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 199

               
               
               Conread position:33-244
               
               
               Cow position:chr4:4647619-4647408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 42

               
               
               Conread position:33-250
               
               
               Cow position:chr4:28660328-28660547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):94, 207

               
               
               Conread position:33-272
               
               
               Cow position:chr4:42231813-42232043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):9, 21

               
               
               Conread position:33-304
               
               
               Cow position:chr4:60363573-60363295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:33-331
               
               
               Cow position:chr4:45706254-45705967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):94, 24

               
               
               Conread position:33-360
               
               
               Cow position:chr4:46136968-46136644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):33, 108

               
               
               Conread position:33-378
               
               
               Cow position:chr4:2885331-2885667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):227, 10

               
               
               Conread position:33-384
               
               
               Cow position:chr4:11871693-11872039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:257
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):85, 58

               
               
               Conread position:34-251
               
               
               Cow position:chr4:29843038-29842828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:34-343
               
               
               Cow position:chr4:10895608-10895913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 215

               
               
               Conread position:34-381
               
               
               Cow position:chr4:19315791-19316130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:34-382
               
               
               Cow position:chr4:68430359-68430015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:34-383
               
               
               Cow position:chr4:41370723-41371071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):22, 113

               
               
               Conread position:35-318
               
               
               Cow position:chr4:26012625-26012331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):92, 17

               
               
               Conread position:35-321
               
               
               Cow position:chr4:26830932-26830634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):92, 17

               
               
               Conread position:35-326
               
               
               Cow position:chr4:2940940-2940647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 33

               
               
               Conread position:35-339
               
               
               Cow position:chr4:26644963-26644650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):126, 91

               
               
               Conread position:35-369
               
               
               Cow position:chr4:37675844-37675499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 57

               
               
               Conread position:35-385
               
               
               Cow position:chr4:32259619-32259975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 62

               
               
               Conread position:36-247
               
               
               Cow position:chr4:65108749-65108538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 62

               
               
               Conread position:36-296
               
               
               Cow position:chr4:59074528-59074782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):113, 18

               
               
               Conread position:36-369
               
               
               Cow position:chr4:7283-7606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):118, 17

               
               
               Conread position:36-381
               
               
               Cow position:chr4:38944047-38944389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 15

               
               
               Conread position:36-384
               
               
               Cow position:chr4:48322252-48321893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:37-238
               
               
               Cow position:chr4:5790859-5790657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):109, 27

               
               
               Conread position:37-377
               
               
               Cow position:chr4:3388756-3388423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):107, 55

               
               
               Conread position:37-384
               
               
               Cow position:chr4:42423592-42423929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 30

               
               
               Conread position:38-223
               
               
               Cow position:chr4:12908581-12908403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:38-289
               
               
               Cow position:chr4:46883455-46883710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):114, 26

               
               
               Conread position:38-347
               
               
               Cow position:chr4:19333592-19333303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):226, 15

               
               
               Conread position:38-365
               
               
               Cow position:chr4:27276332-27276657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):92, 56

               
               
               Conread position:38-368
               
               
               Cow position:chr4:570998-570681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):218, 15

               
               
               Conread position:38-384
               
               
               Cow position:chr4:16881159-16881494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:246
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:38-384
               
               
               Cow position:chr4:44449315-44449637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:249
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):257, 32

               
               
               Conread position:38-384
               
               
               Cow position:chr4:68076321-68076661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 109

               
               
               Conread position:39-247
               
               
               Cow position:chr4:45588219-45588425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):125, 32

               
               
               Conread position:39-384
               
               
               Cow position:chr4:27530328-27529986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 57

               
               
               Conread position:39-384
               
               
               Cow position:chr4:37935090-37935415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):225, 52

               
               
               Conread position:40-216
               
               
               Cow position:chr4:30250076-30250234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:40-272
               
               
               Cow position:chr4:3268161-3268383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 40

               
               
               Conread position:40-321
               
               
               Cow position:chr4:47038980-47038698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):223, 246

               
               
               Conread position:40-328
               
               
               Cow position:chr4:23190459-23190744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):114, 91

               
               
               Conread position:40-369
               
               
               Cow position:chr4:38156881-38157207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 88

               
               
               Conread position:40-384
               
               
               Cow position:chr4:27665227-27664878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):112, 25

               
               
               Conread position:41-231
               
               
               Cow position:chr4:5132557-5132355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:41-384
               
               
               Cow position:chr4:29384030-29384353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):25, 81

               
               
               Conread position:42-288
               
               
               Cow position:chr4:54390806-54391054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):90, 15

               
               
               Conread position:42-384
               
               
               Cow position:chr4:62983349-62983681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):105, 76

               
               
               Conread position:43-228
               
               
               Cow position:chr4:53050207-53050018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 144

               
               
               Conread position:43-384
               
               
               Cow position:chr4:4084248-4084579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 85

               
               
               Conread position:44-384
               
               
               Cow position:chr4:961457-961795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):22, 84

               
               
               Conread position:44-384
               
               
               Cow position:chr4:20147394-20147055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 86

               
               
               Conread position:45-260
               
               
               Cow position:chr4:561839-561625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):21, 102

               
               
               Conread position:45-378
               
               
               Cow position:chr4:13326743-13327078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 121

               
               
               Conread position:46-271
               
               
               Cow position:chr4:67393299-67393072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:46-368
               
               
               Cow position:chr4:14542471-14542791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:46-386
               
               
               Cow position:chr4:3688134-3687790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 99

               
               
               Conread position:47-241
               
               
               Cow position:chr4:45726702-45726895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 17

               
               
               Conread position:47-251
               
               
               Cow position:chr4:45840595-45840399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):201, 10

               
               
               Conread position:47-251
               
               
               Cow position:chr4:54785727-54785925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:47-271
               
               
               Cow position:chr4:35638701-35638922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):5, 33

               
               
               Conread position:47-301
               
               
               Cow position:chr4:38977687-38977940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):199, 17

               
               
               Conread position:47-344
               
               
               Cow position:chr4:60131432-60131131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:47-362
               
               
               Cow position:chr4:61066961-61066665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 80

               
               
               Conread position:47-378
               
               
               Cow position:chr4:9925435-9925751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):119, 39

               
               
               Conread position:47-384
               
               
               Cow position:chr4:19265780-19265445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:47-384
               
               
               Cow position:chr4:65919824-65919482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 182

               
               
               Conread position:48-219
               
               
               Cow position:chr4:23925172-23925351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:48-230
               
               
               Cow position:chr4:61524633-61524455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:48-251
               
               
               Cow position:chr4:22215309-22215508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:48-316
               
               
               Cow position:chr4:28701548-28701291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):216, 44

               
               
               Conread position:48-378
               
               
               Cow position:chr4:13221978-13222307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):72, 9

               
               
               Conread position:48-378
               
               
               Cow position:chr4:29107113-29106781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):89, 22

               
               
               Conread position:48-382
               
               
               Cow position:chr4:36841464-36841154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):279, 30

               
               
               Conread position:48-384
               
               
               Cow position:chr4:19500883-19501215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 62

               
               
               Conread position:48-384
               
               
               Cow position:chr4:34077150-34076825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):195, 16

               
               
               Conread position:48-384
               
               
               Cow position:chr4:42673378-42673044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):214, 16

               
               
               Conread position:49-214
               
               
               Cow position:chr4:10785938-10786101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):135, 96

               
               
               Conread position:49-214
               
               
               Cow position:chr4:62820852-62821017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 109

               
               
               Conread position:49-244
               
               
               Cow position:chr4:2713653-2713852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:49-249
               
               
               Cow position:chr4:35291227-35291024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:49-276
               
               
               Cow position:chr4:60527384-60527156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:176
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):11, 59

               
               
               Conread position:49-282
               
               
               Cow position:chr4:46404708-46404934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):16, 43

               
               
               Conread position:49-290
               
               
               Cow position:chr4:50687663-50687897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):215, 82

               
               
               Conread position:49-299
               
               
               Cow position:chr4:38209771-38210023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 99

               
               
               Conread position:49-303
               
               
               Cow position:chr4:44903487-44903241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:195
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):17, 68

               
               
               Conread position:49-307
               
               
               Cow position:chr4:65173304-65173047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):214, 97

               
               
               Conread position:49-325
               
               
               Cow position:chr4:68652413-68652136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):53, 142

               
               
               Conread position:49-339
               
               
               Cow position:chr4:3837470-3837186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):140, 66

               
               
               Conread position:49-384
               
               
               Cow position:chr4:3341158-3340820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:236
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):20, 46

               
               
               Conread position:49-384
               
               
               Cow position:chr4:18756638-18756302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):85, 24

               
               
               Conread position:49-384
               
               
               Cow position:chr4:45662315-45662639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):107, 15

               
               
               Conread position:50-198
               
               
               Cow position:chr4:34544506-34544361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:50-216
               
               
               Cow position:chr4:42608940-42608776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:50-244
               
               
               Cow position:chr4:5250392-5250196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):96, 121

               
               
               Conread position:50-245
               
               
               Cow position:chr4:50494980-50494779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:50-255
               
               
               Cow position:chr4:56410548-56410343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:50-255
               
               
               Cow position:chr4:63078427-63078220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):79, 100

               
               
               Conread position:50-256
               
               
               Cow position:chr4:37991791-37991589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):15, 79

               
               
               Conread position:50-267
               
               
               Cow position:chr4:19496701-19496479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:50-272
               
               
               Cow position:chr4:46560379-46560160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):122, 15

               
               
               Conread position:50-274
               
               
               Cow position:chr4:18098860-18099084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 101

               
               
               Conread position:50-274
               
               
               Cow position:chr4:19539031-19539259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):94, 29

               
               
               Conread position:50-274
               
               
               Cow position:chr4:31178022-31177804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):109, 14

               
               
               Conread position:50-275
               
               
               Cow position:chr4:32562033-32561806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):99, 139

               
               
               Conread position:50-282
               
               
               Cow position:chr4:12442110-12441865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):79, 153

               
               
               Conread position:50-303
               
               
               Cow position:chr4:19431486-19431747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):11, 69

               
               
               Conread position:50-321
               
               
               Cow position:chr4:68456713-68456987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:50-326
               
               
               Cow position:chr4:65548832-65549106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):59, 15

               
               
               Conread position:50-332
               
               
               Cow position:chr4:46566270-46566553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 42

               
               
               Conread position:50-336
               
               
               Cow position:chr4:8182433-8182723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 36

               
               
               Conread position:50-344
               
               
               Cow position:chr4:48152170-48152462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):17, 42

               
               
               Conread position:50-368
               
               
               Cow position:chr4:19584915-19584602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 191

               
               
               Conread position:50-378
               
               
               Cow position:chr4:4084907-4085246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 244

               
               
               Conread position:50-378
               
               
               Cow position:chr4:52823201-52823528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):190, 90

               
               
               Conread position:50-378
               
               
               Cow position:chr4:66256879-66256561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):140, 14

               
               
               Conread position:50-379
               
               
               Cow position:chr4:26333000-26333323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:50-379
               
               
               Cow position:chr4:26335167-26335490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:50-382
               
               
               Cow position:chr4:66172592-66172927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:50-383
               
               
               Cow position:chr4:85896-85560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:50-383
               
               
               Cow position:chr4:28771869-28772198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 29

               
               
               Conread position:50-383
               
               
               Cow position:chr4:31505818-31506162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:50-383
               
               
               Cow position:chr4:35982200-35981863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 104

               
               
               Conread position:50-383
               
               
               Cow position:chr4:51851413-51851075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 95

               
               
               Conread position:50-383
               
               
               Cow position:chr4:52748260-52748588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):9, 55

               
               
               Conread position:50-384
               
               
               Cow position:chr4:15439789-15439447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):10, 230

               
               
               Conread position:50-384
               
               
               Cow position:chr4:20327522-20327841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 29

               
               
               Conread position:50-384
               
               
               Cow position:chr4:21088668-21089001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):185, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr4:22101060-22101391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):86, 127

               
               
               Conread position:50-384
               
               
               Cow position:chr4:22138015-22138363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 138

               
               
               Conread position:50-384
               
               
               Cow position:chr4:29291707-29291388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:236
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):49, 44

               
               
               Conread position:50-384
               
               
               Cow position:chr4:51899221-51898876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:50-385
               
               
               Cow position:chr4:58423596-58423947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):104, 26

               
               
               Conread position:50-389
               
               
               Cow position:chr4:58248606-58248266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):27, 170

               
               
               Conread position:51-246
               
               
               Cow position:chr4:47048314-47048124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:51-272
               
               
               Cow position:chr4:38349991-38350220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:51-279
               
               
               Cow position:chr4:10558736-10558509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 40

               
               
               Conread position:51-378
               
               
               Cow position:chr4:49794849-49794547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):252, 6

               
               
               Conread position:51-383
               
               
               Cow position:chr4:14153316-14152958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):69, 40

               
               
               Conread position:52-220
               
               
               Cow position:chr4:38940743-38940910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:52-229
               
               
               Cow position:chr4:25929408-25929240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:52-249
               
               
               Cow position:chr4:42044776-42044971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:52-255
               
               
               Cow position:chr4:56395714-56395510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 12

               
               
               Conread position:52-282
               
               
               Cow position:chr4:60302816-60303045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):157, 75

               
               
               Conread position:52-298
               
               
               Cow position:chr4:18952179-18951926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:52-342
               
               
               Cow position:chr4:19292913-19292631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 93

               
               
               Conread position:52-345
               
               
               Cow position:chr4:45626442-45626714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):119, 34

               
               
               Conread position:52-383
               
               
               Cow position:chr4:27632640-27632320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):130, 42

               
               
               Conread position:52-384
               
               
               Cow position:chr4:36929494-36929186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):212, 27

               
               
               Conread position:52-384
               
               
               Cow position:chr4:51728273-51727945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 88

               
               
               Conread position:52-384
               
               
               Cow position:chr4:51769304-51768981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:242
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):75, 36

               
               
               Conread position:52-384
               
               
               Cow position:chr4:59277273-59277607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 172

               
               
               Conread position:53-220
               
               
               Cow position:chr4:51617798-51617966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:53-230
               
               
               Cow position:chr4:13194155-13193987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:53-230
               
               
               Cow position:chr4:55694368-55694197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:53-247
               
               
               Cow position:chr4:30691201-30691010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):12, 75

               
               
               Conread position:53-248
               
               
               Cow position:chr4:39010251-39010054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):84, 21

               
               
               Conread position:53-255
               
               
               Cow position:chr4:59015778-59015590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:53-256
               
               
               Cow position:chr4:30769229-30769032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:53-269
               
               
               Cow position:chr4:29317870-29318092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):83, 30

               
               
               Conread position:53-280
               
               
               Cow position:chr4:60442833-60443068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:53-282
               
               
               Cow position:chr4:13241837-13241595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):76, 150

               
               
               Conread position:53-296
               
               
               Cow position:chr4:60141328-60141559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):14, 35

               
               
               Conread position:53-298
               
               
               Cow position:chr4:68590967-68590733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):211, 62

               
               
               Conread position:53-330
               
               
               Cow position:chr4:46435532-46435245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:53-331
               
               
               Cow position:chr4:60719290-60719021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):211, 41

               
               
               Conread position:53-340
               
               
               Cow position:chr4:19199086-19199379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:53-345
               
               
               Cow position:chr4:44772841-44773138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):96, 242

               
               
               Conread position:53-366
               
               
               Cow position:chr4:37732281-37732596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):129, 249

               
               
               Conread position:53-366
               
               
               Cow position:chr4:56239666-56239969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):211, 38

               
               
               Conread position:53-378
               
               
               Cow position:chr4:12591022-12591336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):211, 17

               
               
               Conread position:53-378
               
               
               Cow position:chr4:32458658-32458988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):101, 211

               
               
               Conread position:53-378
               
               
               Cow position:chr4:45582924-45583244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 45

               
               
               Conread position:53-378
               
               
               Cow position:chr4:61313003-61313329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):81, 12

               
               
               Conread position:53-379
               
               
               Cow position:chr4:13668420-13668750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):84, 124

               
               
               Conread position:53-379
               
               
               Cow position:chr4:45636370-45636038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 68

               
               
               Conread position:53-379
               
               
               Cow position:chr4:51903806-51903478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):84, 45

               
               
               Conread position:53-384
               
               
               Cow position:chr4:11187652-11187322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):20, 93

               
               
               Conread position:53-384
               
               
               Cow position:chr4:11897104-11897430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:223
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):91, 131

               
               
               Conread position:53-384
               
               
               Cow position:chr4:12676993-12676673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):211, 76

               
               
               Conread position:53-384
               
               
               Cow position:chr4:19745068-19744754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:53-384
               
               
               Cow position:chr4:22236287-22236612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):93, 26

               
               
               Conread position:53-384
               
               
               Cow position:chr4:30778622-30778961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):96, 133

               
               
               Conread position:53-384
               
               
               Cow position:chr4:30974532-30974209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 101

               
               
               Conread position:53-384
               
               
               Cow position:chr4:34641525-34641858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 123

               
               
               Conread position:53-384
               
               
               Cow position:chr4:54524132-54524461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):68, 153

               
               
               Conread position:53-384
               
               
               Cow position:chr4:59871679-59871354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):8, 21

               
               
               Conread position:53-384
               
               
               Cow position:chr4:66118333-66118657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):99, 11

               
               
               Conread position:53-387
               
               
               Cow position:chr4:43894611-43894945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):67, 158

               
               
               Conread position:54-220
               
               
               Cow position:chr4:39569395-39569236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 74

               
               
               Conread position:54-273
               
               
               Cow position:chr4:45874266-45874487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:54-352
               
               
               Cow position:chr4:44183922-44184210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 61

               
               
               Conread position:54-361
               
               
               Cow position:chr4:11611060-11610768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):254, 11

               
               
               Conread position:54-382
               
               
               Cow position:chr4:38946416-38946079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):66, 175

               
               
               Conread position:54-383
               
               
               Cow position:chr4:1015268-1014937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):111, 97

               
               
               Conread position:54-383
               
               
               Cow position:chr4:13256264-13255958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):212, 28

               
               
               Conread position:54-383
               
               
               Cow position:chr4:31136952-31136621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 93

               
               
               Conread position:54-384
               
               
               Cow position:chr4:12031044-12030715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:54-384
               
               
               Cow position:chr4:13344733-13344415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 90

               
               
               Conread position:54-384
               
               
               Cow position:chr4:43515920-43515595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 58

               
               
               Conread position:54-385
               
               
               Cow position:chr4:18974622-18974299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):83, 20

               
               
               Conread position:54-412
               
               
               Cow position:chr4:11969651-11969306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):282, 49

               
               
               Conread position:55-275
               
               
               Cow position:chr4:43916489-43916265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:55-344
               
               
               Cow position:chr4:53134793-53134506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):130, 71

               
               
               Conread position:55-378
               
               
               Cow position:chr4:28836732-28836410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):89, 30

               
               
               Conread position:55-384
               
               
               Cow position:chr4:4186312-4185993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):126, 10

               
               
               Conread position:55-384
               
               
               Cow position:chr4:22009865-22010192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 55

               
               
               Conread position:55-384
               
               
               Cow position:chr4:38935556-38935225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:56-232
               
               
               Cow position:chr4:34919079-34919249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:56-275
               
               
               Cow position:chr4:33838608-33838823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):206, 89

               
               
               Conread position:56-364
               
               
               Cow position:chr4:31023644-31023338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):76, 153

               
               
               Conread position:56-366
               
               
               Cow position:chr4:22546648-22546951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):208, 89

               
               
               Conread position:56-384
               
               
               Cow position:chr4:1026042-1026356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):10, 36

               
               
               Conread position:56-384
               
               
               Cow position:chr4:10915637-10915968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):82, 52

               
               
               Conread position:56-386
               
               
               Cow position:chr4:20124773-20125117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):109, 82

               
               
               Conread position:57-220
               
               
               Cow position:chr4:66412377-66412219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:57-238
               
               
               Cow position:chr4:28854082-28854257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:57-240
               
               
               Cow position:chr4:62794162-62794351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:57-256
               
               
               Cow position:chr4:32602020-32601834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:57-261
               
               
               Cow position:chr4:19543137-19542927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:57-270
               
               
               Cow position:chr4:21161299-21161087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):129, 88

               
               
               Conread position:57-274
               
               
               Cow position:chr4:4295772-4295564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):206, 37

               
               
               Conread position:57-321
               
               
               Cow position:chr4:34510023-34509770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):207, 34

               
               
               Conread position:57-330
               
               
               Cow position:chr4:69290547-69290816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:198
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):84, 92

               
               
               Conread position:57-332
               
               
               Cow position:chr4:59001944-59002213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 162

               
               
               Conread position:57-353
               
               
               Cow position:chr4:69169843-69169555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):60, 71

               
               
               Conread position:57-379
               
               
               Cow position:chr4:25356136-25356433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):213, 52

               
               
               Conread position:57-383
               
               
               Cow position:chr4:36290816-36290498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 71

               
               
               Conread position:57-383
               
               
               Cow position:chr4:68387982-68387661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):26, 31

               
               
               Conread position:57-384
               
               
               Cow position:chr4:19119213-19118875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 0

               
               
               Conread position:57-384
               
               
               Cow position:chr4:19597138-19597447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):205, 70

               
               
               Conread position:57-384
               
               
               Cow position:chr4:21874372-21874043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 281

               
               
               Conread position:57-384
               
               
               Cow position:chr4:33970711-33971029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):188, 16

               
               
               Conread position:57-384
               
               
               Cow position:chr4:54455152-54455474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 91

               
               
               Conread position:57-384
               
               
               Cow position:chr4:65825630-65825982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:57-384
               
               
               Cow position:chr4:66547569-66547898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):70, 239

               
               
               Conread position:57-384
               
               
               Cow position:chr4:68234157-68233843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 29

               
               
               Conread position:58-217
               
               
               Cow position:chr4:51026544-51026385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):149, 87

               
               
               Conread position:58-220
               
               
               Cow position:chr4:19330579-19330736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:58-244
               
               
               Cow position:chr4:45964083-45963892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:58-272
               
               
               Cow position:chr4:61391042-61391246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:58-281
               
               
               Cow position:chr4:17051090-17051316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):15, 105

               
               
               Conread position:58-289
               
               
               Cow position:chr4:22071479-22071700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):98, 33

               
               
               Conread position:58-343
               
               
               Cow position:chr4:38921571-38921859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):111, 231

               
               
               Conread position:58-366
               
               
               Cow position:chr4:2894231-2893914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:58-368
               
               
               Cow position:chr4:56591235-56590926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):52, 129

               
               
               Conread position:58-383
               
               
               Cow position:chr4:26659493-26659174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 87

               
               
               Conread position:58-384
               
               
               Cow position:chr4:19407797-19408131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 55

               
               
               Conread position:58-384
               
               
               Cow position:chr4:21065218-21064905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 71

               
               
               Conread position:58-384
               
               
               Cow position:chr4:23646674-23646974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):14, 85

               
               
               Conread position:58-384
               
               
               Cow position:chr4:44613198-44612871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):101, 59

               
               
               Conread position:58-384
               
               
               Cow position:chr4:47262730-47262401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):96, 127

               
               
               Conread position:59-216
               
               
               Cow position:chr4:2770263-2770110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:59-217
               
               
               Cow position:chr4:27425901-27425747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 20

               
               
               Conread position:59-220
               
               
               Cow position:chr4:56307994-56307835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):99, 32

               
               
               Conread position:59-222
               
               
               Cow position:chr4:8675559-8675400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):112, 86

               
               
               Conread position:59-244
               
               
               Cow position:chr4:63261665-63261479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:59-272
               
               
               Cow position:chr4:27699232-27699012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):72, 123

               
               
               Conread position:59-274
               
               
               Cow position:chr4:26959774-26959991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):97, 130

               
               
               Conread position:59-274
               
               
               Cow position:chr4:27521752-27521531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 169

               
               
               Conread position:59-275
               
               
               Cow position:chr4:2681521-2681310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):87, 32

               
               
               Conread position:59-282
               
               
               Cow position:chr4:386202-386422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):205, 115

               
               
               Conread position:59-282
               
               
               Cow position:chr4:5728023-5727814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):148, 62

               
               
               Conread position:59-292
               
               
               Cow position:chr4:47305273-47305035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):95, 119

               
               
               Conread position:59-344
               
               
               Cow position:chr4:38822126-38822409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):90, 32

               
               
               Conread position:59-358
               
               
               Cow position:chr4:54789837-54789534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):17, 132

               
               
               Conread position:59-377
               
               
               Cow position:chr4:18095469-18095794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):85, 35

               
               
               Conread position:59-378
               
               
               Cow position:chr4:23450898-23451220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):112, 131

               
               
               Conread position:59-378
               
               
               Cow position:chr4:31348008-31348313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):205, 69

               
               
               Conread position:59-379
               
               
               Cow position:chr4:7043625-7043949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):90, 191

               
               
               Conread position:59-379
               
               
               Cow position:chr4:19578575-19578277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):148, 32

               
               
               Conread position:59-382
               
               
               Cow position:chr4:202951-203271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):88, 42

               
               
               Conread position:59-383
               
               
               Cow position:chr4:61388876-61389204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:59-384
               
               
               Cow position:chr4:7964455-7964787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):97, 109

               
               
               Conread position:59-384
               
               
               Cow position:chr4:22713305-22713622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):164, 13

               
               
               Conread position:59-384
               
               
               Cow position:chr4:34310273-34310582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):205, 32

               
               
               Conread position:59-384
               
               
               Cow position:chr4:45076887-45077205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):106, 79

               
               
               Conread position:59-384
               
               
               Cow position:chr4:49158600-49158915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):75, 155

               
               
               Conread position:59-384
               
               
               Cow position:chr4:54938072-54937757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):112, 36

               
               
               Conread position:59-384
               
               
               Cow position:chr4:68569452-68569784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):90, 119

               
               
               Conread position:59-388
               
               
               Cow position:chr4:1985843-1985508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):78, 128

               
               
               Conread position:59-395
               
               
               Cow position:chr4:68764711-68764379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):69, 139

               
               
               Conread position:60-209
               
               
               Cow position:chr4:19463739-19463588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):90, 111

               
               
               Conread position:60-219
               
               
               Cow position:chr4:30944145-30943988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:60-233
               
               
               Cow position:chr4:65291672-65291836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):37, 86

               
               
               Conread position:60-245
               
               
               Cow position:chr4:3519610-3519429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:60-251
               
               
               Cow position:chr4:51083149-51083336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):37, 87

               
               
               Conread position:60-265
               
               
               Cow position:chr4:13995581-13995375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):15, 113

               
               
               Conread position:60-275
               
               
               Cow position:chr4:16221680-16221900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):42, 32

               
               
               Conread position:60-275
               
               
               Cow position:chr4:21506773-21506979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):17, 63

               
               
               Conread position:60-315
               
               
               Cow position:chr4:17851070-17851315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):204, 13

               
               
               Conread position:60-328
               
               
               Cow position:chr4:65463322-65463572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):203, 82

               
               
               Conread position:60-348
               
               
               Cow position:chr4:45800072-45799779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):13, 134

               
               
               Conread position:60-348
               
               
               Cow position:chr4:69455437-69455720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):37, 76

               
               
               Conread position:60-368
               
               
               Cow position:chr4:16513337-16513635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):106, 10

               
               
               Conread position:60-376
               
               
               Cow position:chr4:45837438-45837750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):86, 50

               
               
               Conread position:60-378
               
               
               Cow position:chr4:25197299-25197619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):84, 124

               
               
               Conread position:60-378
               
               
               Cow position:chr4:37691120-37691434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):77, 24

               
               
               Conread position:60-383
               
               
               Cow position:chr4:56570982-56570675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):204, 60

               
               
               Conread position:60-384
               
               
               Cow position:chr4:10732413-10732091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):13, 83

               
               
               Conread position:60-384
               
               
               Cow position:chr4:17774174-17774485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):204, 50

               
               
               Conread position:60-384
               
               
               Cow position:chr4:24810260-24810572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):37, 83

               
               
               Conread position:60-384
               
               
               Cow position:chr4:34631098-34630763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 317

               
               
               Conread position:60-384
               
               
               Cow position:chr4:41867639-41867313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):71, 134

               
               
               Conread position:61-220
               
               
               Cow position:chr4:20153364-20153516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:61-249
               
               
               Cow position:chr4:51986384-51986575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:61-254
               
               
               Cow position:chr4:61887831-61887635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):19, 169

               
               
               Conread position:61-255
               
               
               Cow position:chr4:42347677-42347482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:61-282
               
               
               Cow position:chr4:44854097-44854320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):62, 90

               
               
               Conread position:61-363
               
               
               Cow position:chr4:9444492-9444797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):74, 88

               
               
               Conread position:61-368
               
               
               Cow position:chr4:12127449-12127751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):110, 67

               
               
               Conread position:61-373
               
               
               Cow position:chr4:2099822-2099517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):83, 33

               
               
               Conread position:61-382
               
               
               Cow position:chr4:46258685-46258356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):95, 116

               
               
               Conread position:61-382
               
               
               Cow position:chr4:47731054-47730728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 291

               
               
               Conread position:61-383
               
               
               Cow position:chr4:48486186-48485874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 255

               
               
               Conread position:61-383
               
               
               Cow position:chr4:62317637-62317314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):86, 33

               
               
               Conread position:61-384
               
               
               Cow position:chr4:21531449-21531775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 164

               
               
               Conread position:61-384
               
               
               Cow position:chr4:23846864-23847179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 61

               
               
               Conread position:61-384
               
               
               Cow position:chr4:62472266-62471941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 51

               
               
               Conread position:61-387
               
               
               Cow position:chr4:4318964-4319281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 68

               
               
               Conread position:61-388
               
               
               Cow position:chr4:1419414-1419087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 64

               
               
               Conread position:62-219
               
               
               Cow position:chr4:68777129-68776969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):69, 109

               
               
               Conread position:62-220
               
               
               Cow position:chr4:66168149-66168299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:62-237
               
               
               Cow position:chr4:27657161-27656993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:62-247
               
               
               Cow position:chr4:23984929-23985119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:62-252
               
               
               Cow position:chr4:42373966-42374155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:62-265
               
               
               Cow position:chr4:41907393-41907594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:62-348
               
               
               Cow position:chr4:48104376-48104660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):88, 67

               
               
               Conread position:62-355
               
               
               Cow position:chr4:24092942-24093242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):87, 125

               
               
               Conread position:62-379
               
               
               Cow position:chr4:25354717-25354407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):85, 126

               
               
               Conread position:62-384
               
               
               Cow position:chr4:17186159-17186484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 171

               
               
               Conread position:62-384
               
               
               Cow position:chr4:37915149-37915469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 77

               
               
               Conread position:63-382
               
               
               Cow position:chr4:64191992-64192320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):79, 116

               
               
               Conread position:63-386
               
               
               Cow position:chr4:3283266-3283580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:64-221
               
               
               Cow position:chr4:63293645-63293491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:64-233
               
               
               Cow position:chr4:22331307-22331144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):69, 28

               
               
               Conread position:64-290
               
               
               Cow position:chr4:14020686-14020461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):77, 99

               
               
               Conread position:64-345
               
               
               Cow position:chr4:19102689-19102977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:64-364
               
               
               Cow position:chr4:45012966-45013275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):80, 169

               
               
               Conread position:64-368
               
               
               Cow position:chr4:46494488-46494181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):161, 31

               
               
               Conread position:64-379
               
               
               Cow position:chr4:34699857-34700164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):140, 80

               
               
               Conread position:64-383
               
               
               Cow position:chr4:46527191-46526866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):141, 235

               
               
               Conread position:64-384
               
               
               Cow position:chr4:508725-509034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):90, 31

               
               
               Conread position:64-384
               
               
               Cow position:chr4:3421811-3421496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 77

               
               
               Conread position:64-384
               
               
               Cow position:chr4:36577424-36577761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):63, 153

               
               
               Conread position:64-384
               
               
               Cow position:chr4:52831828-52832149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 175

               
               
               Conread position:65-382
               
               
               Cow position:chr4:40414441-40414757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 83

               
               
               Conread position:65-384
               
               
               Cow position:chr4:13590273-13589956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):68, 113

               
               
               Conread position:65-384
               
               
               Cow position:chr4:23509777-23509461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):199, 29

               
               
               Conread position:67-220
               
               
               Cow position:chr4:36070886-36070735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):92, 60

               
               
               Conread position:67-327
               
               
               Cow position:chr4:48423052-48422801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):200, 49

               
               
               Conread position:68-378
               
               
               Cow position:chr4:53208466-53208170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):196, 59

               
               
               Conread position:68-384
               
               
               Cow position:chr4:29805186-29805501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):59, 167

               
               
               Conread position:69-231
               
               
               Cow position:chr4:36709207-36709042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):100, 91

               
               
               Conread position:69-251
               
               
               Cow position:chr4:19123052-19122874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:69-255
               
               
               Cow position:chr4:27511730-27511542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):75, 108

               
               
               Conread position:69-378
               
               
               Cow position:chr4:63349293-63349600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):75, 192

               
               
               Conread position:69-384
               
               
               Cow position:chr4:44258149-44258480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):19, 92

               
               
               Conread position:69-384
               
               
               Cow position:chr4:46383183-46383497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):46, 119

               
               
               Conread position:71-379
               
               
               Cow position:chr4:54171805-54171501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):83, 56

               
               
               Conread position:72-225
               
               
               Cow position:chr4:60621416-60621568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:72-230
               
               
               Cow position:chr4:38358644-38358802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):74, 42

               
               
               Conread position:72-275
               
               
               Cow position:chr4:34653696-34653892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):195, 56

               
               
               Conread position:72-288
               
               
               Cow position:chr4:48381569-48381344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):63, 157

               
               
               Conread position:72-347
               
               
               Cow position:chr4:32462858-32462569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 88

               
               
               Conread position:72-361
               
               
               Cow position:chr4:45775151-45775448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:72-383
               
               
               Cow position:chr4:34165807-34166108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:214
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):162, 50

               
               
               Conread position:72-384
               
               
               Cow position:chr4:4827312-4826994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):46, 219

               
               
               Conread position:72-384
               
               
               Cow position:chr4:43740710-43740390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):187, 55

               
               
               Conread position:72-384
               
               
               Cow position:chr4:46550568-46550257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):59, 20

               
               
               Conread position:72-384
               
               
               Cow position:chr4:54478735-54479035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:230
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):54, 154

               
               
               Conread position:73-307
               
               
               Cow position:chr4:60506454-60506221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):62, 18

               
               
               Conread position:73-381
               
               
               Cow position:chr4:23444860-23445176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):73, 311

               
               
               Conread position:73-384
               
               
               Cow position:chr4:33100629-33100948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):53, 43

               
               
               Conread position:74-384
               
               
               Cow position:chr4:1060102-1060396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:76-343
               
               
               Cow position:chr4:31859443-31859172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):77, 100

               
               
               Conread position:79-383
               
               
               Cow position:chr4:16594248-16593953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):185, 25

               
               
               Conread position:79-384
               
               
               Cow position:chr4:19097463-19097158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 149

               
               
               Conread position:80-384
               
               
               Cow position:chr4:54871852-54872158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):64, 88

               
               
               Conread position:81-373
               
               
               Cow position:chr4:5577044-5577323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):178, 91

               
               
               Conread position:81-385
               
               
               Cow position:chr4:57584068-57584377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):88, 63

               
               
               Conread position:82-274
               
               
               Cow position:chr4:26901491-26901305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):182, 47

               
               
               Conread position:82-377
               
               
               Cow position:chr4:12004387-12004101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):54, 85

               
               
               Conread position:83-236
               
               
               Cow position:chr4:53380859-53380704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:83-368
               
               
               Cow position:chr4:17052417-17052716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):61, 103

               
               
               Conread position:83-385
               
               
               Cow position:chr4:40918469-40918152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):94, 9

               
               
               Conread position:86-369
               
               
               Cow position:chr4:12901390-12901670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):60, 43

               
               
               Conread position:87-330
               
               
               Cow position:chr4:19430528-19430283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):23, 43

               
               
               Conread position:87-340
               
               
               Cow position:chr4:61188702-61188957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):57, 89

               
               
               Conread position:87-384
               
               
               Cow position:chr4:25537714-25537414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 101

               
               
               Conread position:88-384
               
               
               Cow position:chr4:37313334-37313039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):56, 148

               
               
               Conread position:90-330
               
               
               Cow position:chr4:34562542-34562302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):165, 62

               
               
               Conread position:91-384
               
               
               Cow position:chr4:7571570-7571279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):157, 37

               
               
               Conread position:93-354
               
               
               Cow position:chr4:46476780-46477054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:93-378
               
               
               Cow position:chr4:50203915-50203629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 83

               
               
               Conread position:95-273
               
               
               Cow position:chr4:23656134-23655952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):42, 132

               
               
               Conread position:95-384
               
               
               Cow position:chr4:6653880-6653598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:202
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):27, 56

               
               
               Conread position:98-241
               
               
               Cow position:chr4:479640-479780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:98-260
               
               
               Cow position:chr4:54650331-54650492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):140, 54

               
               
               Conread position:98-384
               
               
               Cow position:chr4:23526856-23526563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):30, 86

               
               
               Conread position:98-384
               
               
               Cow position:chr4:38999578-38999293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):192, 147

               
               
               Conread position:99-383
               
               
               Cow position:chr4:63964839-63965119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:209
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):165, 53

               
               
               Conread position:99-411
               
               
               Cow position:chr4:65824563-65824251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):275, 160

               
               
               Conread position:102-384
               
               
               Cow position:chr4:23600318-23600048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:204
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:102-384
               
               
               Cow position:chr4:68889422-68889688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):162, 43

               
               
               Conread position:103-384
               
               
               Cow position:chr4:46591816-46591533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):161, 48

               
               
               Conread position:105-384
               
               
               Cow position:chr4:46455919-46456192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):39, 129

               
               
               Conread position:105-394
               
               
               Cow position:chr4:45074205-45073924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):159, 36

               
               
               Conread position:127-332
               
               
               Cow position:chr4:10851325-10851528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):169, 95

               
               
               Conread position:128-280
               
               
               Cow position:chr4:58305786-58305933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):135, 18

               
               
               Conread position:128-331
               
               
               Cow position:chr4:8907-9110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):37, 188

               
               
               Conread position:128-344
               
               
               Cow position:chr4:53100925-53100707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):134, 19

               
               
               Conread position:128-348
               
               
               Cow position:chr4:54541514-54541737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:177
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):12, 25

               
               
               Conread position:128-349
               
               
               Cow position:chr4:7808696-7808477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):138, 114

               
               
               Conread position:128-368
               
               
               Cow position:chr4:11380404-11380169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):136, 115

               
               
               Conread position:128-383
               
               
               Cow position:chr4:20843042-20842794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):50, 112

               
               
               Conread position:128-383
               
               
               Cow position:chr4:36731315-36731064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):136, 145

               
               
               Conread position:128-383
               
               
               Cow position:chr4:48396675-48396924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):119, 18

               
               
               Conread position:128-384
               
               
               Cow position:chr4:21874925-21874685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):170, 31

               
               
               Conread position:128-384
               
               
               Cow position:chr4:33091498-33091248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):38, 56

               
               
               Conread position:129-303
               
               
               Cow position:chr4:51920666-51920494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):135, 18

               
               
               Conread position:129-367
               
               
               Cow position:chr4:17084215-17084455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):18, 31

               
               
               Conread position:129-378
               
               
               Cow position:chr4:2602352-2602107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):135, 17

               
               
               Conread position:129-384
               
               
               Cow position:chr4:12903948-12903687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:129-384
               
               
               Cow position:chr4:32726349-32726095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 175

               
               
               Conread position:129-385
               
               
               Cow position:chr4:49089910-49089656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):49, 148

               
               
               Conread position:130-309
               
               
               Cow position:chr4:65131333-65131511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):134, 16

               
               
               Conread position:130-384
               
               
               Cow position:chr4:10379234-10378977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:131-338
               
               
               Cow position:chr4:19098594-19098380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:131-349
               
               
               Cow position:chr4:65265184-65265407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 49

               
               
               Conread position:131-363
               
               
               Cow position:chr4:34211287-34211056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):133, 16

               
               
               Conread position:131-377
               
               
               Cow position:chr4:30792090-30791848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):174, 123

               
               
               Conread position:131-378
               
               
               Cow position:chr4:45367861-45367611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):55, 49

               
               
               Conread position:131-379
               
               
               Cow position:chr4:65650013-65650249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-383
               
               
               Cow position:chr4:30169711-30169955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):170, 23

               
               
               Conread position:131-383
               
               
               Cow position:chr4:48961364-48961610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):136, 91

               
               
               Conread position:131-384
               
               
               Cow position:chr4:8947504-8947262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):133, 13

               
               
               Conread position:131-384
               
               
               Cow position:chr4:9815225-9815479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:131-384
               
               
               Cow position:chr4:13973850-13974100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):136, 16

               
               
               Conread position:131-384
               
               
               Cow position:chr4:33433138-33433395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):133, 21

               
               
               Conread position:131-384
               
               
               Cow position:chr4:44782496-44782242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):132, 106

               
               
               Conread position:131-384
               
               
               Cow position:chr4:51784300-51784047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-384
               
               
               Cow position:chr4:58880842-58881094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:131-384
               
               
               Cow position:chr4:59378029-59377783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):133, 25

               
               
               Conread position:131-408
               
               
               Cow position:chr4:47510506-47510235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):128, 80

               
               
               Conread position:132-325
               
               
               Cow position:chr4:19324097-19323900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:132-348
               
               
               Cow position:chr4:45563865-45563647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:132-368
               
               
               Cow position:chr4:63095953-63096189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):132, 177

               
               
               Conread position:132-377
               
               
               Cow position:chr4:11194304-11194060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):131, 20

               
               
               Conread position:132-384
               
               
               Cow position:chr4:20157299-20157549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):132, 14

               
               
               Conread position:132-384
               
               
               Cow position:chr4:37704384-37704135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):131, 19

               
               
               Conread position:132-384
               
               
               Cow position:chr4:45644200-45644439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:133-383
               
               
               Cow position:chr4:36893479-36893227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):131, 154

               
               
               Conread position:133-384
               
               
               Cow position:chr4:19321958-19322214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:133-384
               
               
               Cow position:chr4:41300880-41301122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):142, 19

               
               
               Conread position:133-386
               
               
               Cow position:chr4:48173254-48173005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):129, 13

               
               
               Conread position:134-330
               
               
               Cow position:chr4:49826369-49826176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):52, 19

               
               
               Conread position:134-378
               
               
               Cow position:chr4:25879507-25879273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:134-384
               
               
               Cow position:chr4:25888718-25888961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):169, 18

               
               
               Conread position:134-384
               
               
               Cow position:chr4:62771804-62772056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:135-274
               
               
               Cow position:chr4:36744694-36744558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:135-348
               
               
               Cow position:chr4:34503412-34503197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):111, 21

               
               
               Conread position:135-376
               
               
               Cow position:chr4:13941574-13941340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):129, 81

               
               
               Conread position:135-384
               
               
               Cow position:chr4:39128655-39128402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):129, 81

               
               
               Conread position:135-384
               
               
               Cow position:chr4:45738359-45738609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):129, 24

               
               
               Conread position:136-365
               
               
               Cow position:chr4:69543299-69543071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):128, 147

               
               
               Conread position:136-376
               
               
               Cow position:chr4:65175030-65175261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):128, 16

               
               
               Conread position:136-384
               
               
               Cow position:chr4:19582503-19582748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):128, 20

               
               
               Conread position:141-383
               
               
               Cow position:chr4:12561151-12560900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 10

               
               
               Conread position:141-383
               
               
               Cow position:chr4:65815596-65815828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):123, 27

               
               
               Conread position:142-382
               
               
               Cow position:chr4:63459112-63459341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):190, 120

               
               
               Conread position:144-384
               
               
               Cow position:chr4:5460754-5460993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):120, 7

               
               
               Conread position:145-384
               
               
               Cow position:chr4:55395869-55395629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):119, 55

               
               
               Conread position:146-290
               
               
               Cow position:chr4:56336772-56336629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):118, 73

               
               
               Conread position:146-383
               
               
               Cow position:chr4:60897176-60897406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:146-433
               
               
               Cow position:chr4:24481566-24481845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):105, 28

               
               
               Conread position:147-339
               
               
               Cow position:chr4:66136502-66136691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):117, 74

               
               
               Conread position:147-344
               
               
               Cow position:chr4:34337166-34337364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):117, 74

               
               
               Conread position:147-378
               
               
               Cow position:chr4:34369344-34369576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):45, 40

               
               
               Conread position:147-378
               
               
               Cow position:chr4:65950760-65950530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):120, 33

               
               
               Conread position:147-383
               
               
               Cow position:chr4:55508141-55508370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):156, 123

               
               
               Conread position:147-384
               
               
               Cow position:chr4:3850657-3850425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):117, 130

               
               
               Conread position:148-332
               
               
               Cow position:chr4:20504982-20505161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):101, 19

               
               
               Conread position:148-373
               
               
               Cow position:chr4:21017-20799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):116, 137

               
               
               Conread position:148-383
               
               
               Cow position:chr4:24001862-24002098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):116, 38

               
               
               Conread position:148-431
               
               
               Cow position:chr4:5913240-5913525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 75

               
               
               Conread position:149-384
               
               
               Cow position:chr4:17111770-17112008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):115, 78

               
               
               Conread position:151-319
               
               
               Cow position:chr4:42176372-42176538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):113, 134

               
               
               Conread position:151-384
               
               
               Cow position:chr4:20139415-20139656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):113, 55

               
               
               Conread position:152-381
               
               
               Cow position:chr4:61897434-61897664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):112, 136

               
               
               Conread position:152-384
               
               
               Cow position:chr4:7430421-7430192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):56, 141

               
               
               Conread position:152-384
               
               
               Cow position:chr4:20184803-20184582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):6, 68

               
               
               Conread position:152-384
               
               
               Cow position:chr4:42921759-42921983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):112, 69

               
               
               Conread position:152-384
               
               
               Cow position:chr4:47348927-47348696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):112, 80

               
               
               Conread position:152-384
               
               
               Cow position:chr4:48409168-48409397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:180
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):112, 101

               
               
               Conread position:152-385
               
               
               Cow position:chr4:12049347-12049112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):113, 73

               
               
               Conread position:153-384
               
               
               Cow position:chr4:8413023-8413251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):57, 128

               
               
               Conread position:153-384
               
               
               Cow position:chr4:53346431-53346195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 135

               
               
               Conread position:154-282
               
               
               Cow position:chr4:65179048-65179180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:155-366
               
               
               Cow position:chr4:13026399-13026189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):109, 12

               
               
               Conread position:155-380
               
               
               Cow position:chr4:39609815-39609606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):108, 40

               
               
               Conread position:155-384
               
               
               Cow position:chr4:27755206-27755432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):109, 122

               
               
               Conread position:156-384
               
               
               Cow position:chr4:25984317-25984095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 134

               
               
               Conread position:161-328
               
               
               Cow position:chr4:61478697-61478526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:161-332
               
               
               Cow position:chr4:13990867-13991034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):142, 61

               
               
               Conread position:161-384
               
               
               Cow position:chr4:33395606-33395825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):103, 172

               
               
               Conread position:161-384
               
               
               Cow position:chr4:38952645-38952421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 122

               
               
               Conread position:163-384
               
               
               Cow position:chr4:16601973-16602184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):142, 59

               
               
               Conread position:163-385
               
               
               Cow position:chr4:21257034-21257257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):23, 185

               
               
               Conread position:165-384
               
               
               Cow position:chr4:41602937-41602718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):99, 151

               
               
               Conread position:167-384
               
               
               Cow position:chr4:16799100-16799319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:172-384
               
               
               Cow position:chr4:21232793-21233005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):92, 120

               
               
               Conread position:174-384
               
               
               Cow position:chr4:65432229-65432019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):90, 201

               
               
               Conread position:179-348
               
               
               Cow position:chr4:51730023-51729857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):86, 8

               
               
               Conread position:179-384
               
               
               Cow position:chr4:620061-620281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):85, 43

               
               
               Conread position:179-384
               
               
               Cow position:chr4:23854254-23854065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):124, 74

               
               
               Conread position:179-384
               
               
               Cow position:chr4:66111997-66112204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:180-385
               
               
               Cow position:chr4:20299347-20299141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):84, 28

               
               
               Conread position:181-378
               
               
               Cow position:chr4:46183486-46183285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):5, 115

               
               
               Conread position:182-332
               
               
               Cow position:chr4:19493626-19493473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:182-384
               
               
               Cow position:chr4:11332168-11331961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:185-384
               
               
               Cow position:chr4:44956112-44956317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:187-368
               
               
               Cow position:chr4:67466788-67466607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):77, 106

               
               
               Conread position:187-384
               
               
               Cow position:chr4:24744340-24744540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:187-384
               
               
               Cow position:chr4:33612293-33612490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):113, 97

               
               
               Conread position:190-378
               
               
               Cow position:chr4:25359661-25359485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:190-384
               
               
               Cow position:chr4:14470507-14470701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):80, 44

               
               
               Conread position:191-378
               
               
               Cow position:chr4:54930360-54930545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):73, 27

               
               
               Conread position:192-384
               
               
               Cow position:chr4:27540680-27540490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):46, 124

               
               
               Conread position:192-384
               
               
               Cow position:chr4:39231460-39231647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):72, 96

               
               
               Conread position:194-352
               
               
               Cow position:chr4:19008105-19007946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):52, 69

               
               
               Conread position:194-378
               
               
               Cow position:chr4:48143897-48143705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:194-379
               
               
               Cow position:chr4:43865798-43865983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 55

               
               
               Conread position:194-384
               
               
               Cow position:chr4:4843185-4843378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 104

               
               
               Conread position:194-384
               
               
               Cow position:chr4:24458040-24458230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):13, 157

               
               
               Conread position:194-385
               
               
               Cow position:chr4:59101453-59101648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):16, 107

               
               
               Conread position:196-384
               
               
               Cow position:chr4:17474496-17474305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):109, 74

               
               
               Conread position:199-384
               
               
               Cow position:chr4:275514-275332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:204-384
               
               
               Cow position:chr4:19497217-19497383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:205-384
               
               
               Cow position:chr4:47047942-47047762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):62, 31

               
               
               Conread position:212-384
               
               
               Cow position:chr4:3689745-3689577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):52, 75

               
               
               Conread position:215-384
               
               
               Cow position:chr4:19463534-19463364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):52, 70

               
               
               Conread position:221-384
               
               
               Cow position:chr4:26011884-26011721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 66

               
               
               Conread position:223-368
               
               
               Cow position:chr4:11201850-11201704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:240-384
               
               
               Cow position:chr4:33357949-33357803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 45

               
               
               Conread position:246-384
               
               
               Cow position:chr4:22215646-22215783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 52

               
               
               Conread position:1-273
               
               
               Cow position:chr5:60212872-60212596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 53

               
               
               Conread position:1-348
               
               
               Cow position:chr5:20843116-20843462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):118, 36

               
               
               Conread position:1-384
               
               
               Cow position:chr5:51053369-51053746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):139, 30

               
               
               Conread position:1-384
               
               
               Cow position:chr5:64026735-64027106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:267
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):143, 28

               
               
               Conread position:2-249
               
               
               Cow position:chr5:40122315-40122573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 193

               
               
               Conread position:2-272
               
               
               Cow position:chr5:51246855-51247118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):22, 56

               
               
               Conread position:2-272
               
               
               Cow position:chr5:57062249-57062516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):107, 21

               
               
               Conread position:2-296
               
               
               Cow position:chr5:34914767-34915062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):59, 154

               
               
               Conread position:2-338
               
               
               Cow position:chr5:57393022-57393354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:2-384
               
               
               Cow position:chr5:44673987-44673589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:256
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):29, 51

               
               
               Conread position:5-378
               
               
               Cow position:chr5:16937761-16938099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):259, 17

               
               
               Conread position:7-410
               
               
               Cow position:chr5:12874026-12873621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:271
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):97, 18

               
               
               Conread position:8-346
               
               
               Cow position:chr5:66531188-66530858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):255, 14

               
               
               Conread position:8-384
               
               
               Cow position:chr5:20128334-20127957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):34, 172

               
               
               Conread position:9-272
               
               
               Cow position:chr5:2240714-2240976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):18, 54

               
               
               Conread position:10-383
               
               
               Cow position:chr5:30845382-30845016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:258
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):254, 118

               
               
               Conread position:10-384
               
               
               Cow position:chr5:44049974-44049600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):144, 27

               
               
               Conread position:12-217
               
               
               Cow position:chr5:32976032-32975827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):132, 38

               
               
               Conread position:12-246
               
               
               Cow position:chr5:61043459-61043226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):144, 36

               
               
               Conread position:12-384
               
               
               Cow position:chr5:57074061-57074432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 76

               
               
               Conread position:12-386
               
               
               Cow position:chr5:58519140-58519499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):19, 79

               
               
               Conread position:20-378
               
               
               Cow position:chr5:3282100-3281746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):127, 30

               
               
               Conread position:23-384
               
               
               Cow position:chr5:35246845-35247208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 31

               
               
               Conread position:25-164
               
               
               Cow position:chr5:13471371-13471230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:25-228
               
               
               Cow position:chr5:18579152-18578952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 27

               
               
               Conread position:25-248
               
               
               Cow position:chr5:54127550-54127328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 118

               
               
               Conread position:26-382
               
               
               Cow position:chr5:22738358-22738010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:235
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):37, 126

               
               
               Conread position:26-384
               
               
               Cow position:chr5:57591942-57591596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):349, 11

               
               
               Conread position:27-249
               
               
               Cow position:chr5:62341291-62341065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):45, 69

               
               
               Conread position:28-209
               
               
               Cow position:chr5:56624258-56624440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):118, 25

               
               
               Conread position:28-238
               
               
               Cow position:chr5:45854759-45854539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):99, 161

               
               
               Conread position:28-384
               
               
               Cow position:chr5:64555787-64555432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):126, 25

               
               
               Conread position:29-252
               
               
               Cow position:chr5:58756150-58756372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):159, 21

               
               
               Conread position:29-271
               
               
               Cow position:chr5:57303032-57302782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 221

               
               
               Conread position:29-272
               
               
               Cow position:chr5:65679720-65679957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):235, 56

               
               
               Conread position:29-321
               
               
               Cow position:chr5:269845-270138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):140, 20

               
               
               Conread position:29-374
               
               
               Cow position:chr5:65140557-65140199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:243
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):116, 147

               
               
               Conread position:29-378
               
               
               Cow position:chr5:30178247-30178599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):117, 24

               
               
               Conread position:29-384
               
               
               Cow position:chr5:46512513-46512861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 28

               
               
               Conread position:30-241
               
               
               Cow position:chr5:54751066-54750852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):45, 34

               
               
               Conread position:30-272
               
               
               Cow position:chr5:52853219-52852984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:30-378
               
               
               Cow position:chr5:28330086-28330425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):117, 34

               
               
               Conread position:30-378
               
               
               Cow position:chr5:48154208-48154566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):121, 34

               
               
               Conread position:31-266
               
               
               Cow position:chr5:44312161-44312394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):157, 22

               
               
               Conread position:31-281
               
               
               Cow position:chr5:50824841-50824596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):43, 99

               
               
               Conread position:31-282
               
               
               Cow position:chr5:67679436-67679182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:31-283
               
               
               Cow position:chr5:20394592-20394336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:31-288
               
               
               Cow position:chr5:11562473-11562727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):135, 52

               
               
               Conread position:31-296
               
               
               Cow position:chr5:56549618-56549353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):116, 23

               
               
               Conread position:31-297
               
               
               Cow position:chr5:46540802-46541067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):16, 117

               
               
               Conread position:31-343
               
               
               Cow position:chr5:12149803-12149482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):57, 19

               
               
               Conread position:31-343
               
               
               Cow position:chr5:57265649-57265962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):123, 26

               
               
               Conread position:31-384
               
               
               Cow position:chr5:14550333-14550680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 20

               
               
               Conread position:31-384
               
               
               Cow position:chr5:69461586-69461236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:31-386
               
               
               Cow position:chr5:65883371-65883731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):123, 33

               
               
               Conread position:31-394
               
               
               Cow position:chr5:4322667-4322298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):132, 25

               
               
               Conread position:32-244
               
               
               Cow position:chr5:48061856-48062075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:32-250
               
               
               Cow position:chr5:8146106-8146329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 38

               
               
               Conread position:32-292
               
               
               Cow position:chr5:55965639-55965901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):114, 25

               
               
               Conread position:32-331
               
               
               Cow position:chr5:52001372-52001666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:32-357
               
               
               Cow position:chr5:19972748-19973083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):7, 33

               
               
               Conread position:32-384
               
               
               Cow position:chr5:35685186-35684840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 25

               
               
               Conread position:32-384
               
               
               Cow position:chr5:36868989-36868641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):56, 21

               
               
               Conread position:32-384
               
               
               Cow position:chr5:40889044-40889382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):144, 18

               
               
               Conread position:32-384
               
               
               Cow position:chr5:43370941-43371296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):107, 21

               
               
               Conread position:32-384
               
               
               Cow position:chr5:57767730-57768081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:242
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):26, 63

               
               
               Conread position:32-384
               
               
               Cow position:chr5:66257888-66257541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 107

               
               
               Conread position:33-252
               
               
               Cow position:chr5:17826439-17826219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):121, 143

               
               
               Conread position:33-272
               
               
               Cow position:chr5:53055308-53055548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:33-282
               
               
               Cow position:chr5:29468028-29468277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):40, 31

               
               
               Conread position:33-322
               
               
               Cow position:chr5:26548892-26549178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 17

               
               
               Conread position:33-345
               
               
               Cow position:chr5:59395914-59395598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):114, 17

               
               
               Conread position:33-351
               
               
               Cow position:chr5:52728760-52729081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):103, 20

               
               
               Conread position:33-377
               
               
               Cow position:chr5:25366351-25366000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):207, 31

               
               
               Conread position:33-384
               
               
               Cow position:chr5:50942906-50943248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):23, 112

               
               
               Conread position:33-411
               
               
               Cow position:chr5:40152742-40152350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):21, 156

               
               
               Conread position:34-233
               
               
               Cow position:chr5:60100710-60100523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:34-233
               
               
               Cow position:chr5:60154015-60153828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:34-263
               
               
               Cow position:chr5:63172796-63173021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):158, 108

               
               
               Conread position:34-297
               
               
               Cow position:chr5:70678392-70678656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):21, 152

               
               
               Conread position:34-384
               
               
               Cow position:chr5:55966627-55966977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:248
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):95, 19

               
               
               Conread position:34-384
               
               
               Cow position:chr5:65753123-65752758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 143

               
               
               Conread position:34-384
               
               
               Cow position:chr5:66972683-66972329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:34-384
               
               
               Cow position:chr5:73167759-73168100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):25, 115

               
               
               Conread position:35-238
               
               
               Cow position:chr5:34347487-34347686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):129, 16

               
               
               Conread position:36-225
               
               
               Cow position:chr5:59662809-59662997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):110, 16

               
               
               Conread position:36-245
               
               
               Cow position:chr5:43839750-43839958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):108, 17

               
               
               Conread position:36-270
               
               
               Cow position:chr5:47743870-47743643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):228, 31

               
               
               Conread position:36-356
               
               
               Cow position:chr5:59626725-59627044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 15

               
               
               Conread position:37-224
               
               
               Cow position:chr5:56477454-56477268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):145, 36

               
               
               Conread position:37-230
               
               
               Cow position:chr5:20345787-20345593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):107, 139

               
               
               Conread position:37-257
               
               
               Cow position:chr5:49821678-49821457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:37-272
               
               
               Cow position:chr5:5016670-5016442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:37-300
               
               
               Cow position:chr5:17105096-17104839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 98

               
               
               Conread position:37-343
               
               
               Cow position:chr5:30406462-30406149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 27

               
               
               Conread position:37-355
               
               
               Cow position:chr5:44847778-44848089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):206, 106

               
               
               Conread position:37-373
               
               
               Cow position:chr5:45409572-45409239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):117, 16

               
               
               Conread position:37-384
               
               
               Cow position:chr5:5938574-5938226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:232
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):132, 36

               
               
               Conread position:37-384
               
               
               Cow position:chr5:9893875-9894227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:37-384
               
               
               Cow position:chr5:60175737-60175371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 45

               
               
               Conread position:37-384
               
               
               Cow position:chr5:69338063-69337731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):227, 73

               
               
               Conread position:38-238
               
               
               Cow position:chr5:63187628-63187829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):109, 140

               
               
               Conread position:38-241
               
               
               Cow position:chr5:31648658-31648465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):154, 22

               
               
               Conread position:38-326
               
               
               Cow position:chr5:31052635-31052345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):144, 19

               
               
               Conread position:38-331
               
               
               Cow position:chr5:37255087-37255383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):116, 15

               
               
               Conread position:38-337
               
               
               Cow position:chr5:30419220-30418923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):144, 15

               
               
               Conread position:39-240
               
               
               Cow position:chr5:55162874-55162672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):105, 14

               
               
               Conread position:39-272
               
               
               Cow position:chr5:4267910-4267683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):14, 81

               
               
               Conread position:39-273
               
               
               Cow position:chr5:28681271-28681505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):122, 14

               
               
               Conread position:39-383
               
               
               Cow position:chr5:52040071-52040415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:234
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):47, 25

               
               
               Conread position:39-384
               
               
               Cow position:chr5:32975311-32975651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):109, 139

               
               
               Conread position:39-384
               
               
               Cow position:chr5:39447278-39447628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):95, 317

               
               
               Conread position:39-384
               
               
               Cow position:chr5:64175887-64176215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 17

               
               
               Conread position:40-339
               
               
               Cow position:chr5:19797231-19796919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):46, 24

               
               
               Conread position:40-378
               
               
               Cow position:chr5:52127016-52126686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):129, 13

               
               
               Conread position:40-379
               
               
               Cow position:chr5:31216806-31217151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):20, 136

               
               
               Conread position:41-384
               
               
               Cow position:chr5:7044464-7044805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 21

               
               
               Conread position:43-224
               
               
               Cow position:chr5:46479005-46479180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:43-384
               
               
               Cow position:chr5:65967495-65967826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):223, 30

               
               
               Conread position:44-238
               
               
               Cow position:chr5:30221533-30221730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 144

               
               
               Conread position:44-332
               
               
               Cow position:chr5:43408098-43408405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:44-382
               
               
               Cow position:chr5:55942136-55942492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:251
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):103, 9

               
               
               Conread position:44-394
               
               
               Cow position:chr5:5856101-5855759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):100, 20

               
               
               Conread position:45-247
               
               
               Cow position:chr5:29599311-29599508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):194, 97

               
               
               Conread position:45-347
               
               
               Cow position:chr5:60952902-60952595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 19

               
               
               Conread position:45-384
               
               
               Cow position:chr5:29681333-29680982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):87, 21

               
               
               Conread position:46-176
               
               
               Cow position:chr5:20407234-20407365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:46-250
               
               
               Cow position:chr5:57497184-57497388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):14, 101

               
               
               Conread position:46-268
               
               
               Cow position:chr5:26147831-26147609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:46-352
               
               
               Cow position:chr5:73166900-73167193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):142, 7

               
               
               Conread position:46-365
               
               
               Cow position:chr5:19752541-19752226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 81

               
               
               Conread position:46-373
               
               
               Cow position:chr5:3772081-3771761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):119, 11

               
               
               Conread position:46-378
               
               
               Cow position:chr5:35319321-35319663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):144, 18

               
               
               Conread position:46-396
               
               
               Cow position:chr5:57526685-57527026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):26, 133

               
               
               Conread position:47-249
               
               
               Cow position:chr5:16185620-16185415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 148

               
               
               Conread position:47-378
               
               
               Cow position:chr5:29097600-29097275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):213, 17

               
               
               Conread position:48-228
               
               
               Cow position:chr5:52211453-52211629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:48-233
               
               
               Cow position:chr5:49207089-49207274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):9, 106

               
               
               Conread position:48-234
               
               
               Cow position:chr5:37253662-37253481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 98

               
               
               Conread position:48-273
               
               
               Cow position:chr5:40241974-40241758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 80

               
               
               Conread position:48-282
               
               
               Cow position:chr5:69383491-69383258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:181
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):18, 100

               
               
               Conread position:48-364
               
               
               Cow position:chr5:37893581-37893255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:48-368
               
               
               Cow position:chr5:61999319-61999621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):115, 16

               
               
               Conread position:48-378
               
               
               Cow position:chr5:19335539-19335876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):98, 78

               
               
               Conread position:49-272
               
               
               Cow position:chr5:30562167-30561945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 80

               
               
               Conread position:49-274
               
               
               Cow position:chr5:60514788-60515017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):39, 130

               
               
               Conread position:49-286
               
               
               Cow position:chr5:64060683-64060445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):210, 0

               
               
               Conread position:49-308
               
               
               Cow position:chr5:45186875-45187142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):12, 141

               
               
               Conread position:49-315
               
               
               Cow position:chr5:52108022-52108296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 25

               
               
               Conread position:49-319
               
               
               Cow position:chr5:33273934-33273657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 173

               
               
               Conread position:49-341
               
               
               Cow position:chr5:43922933-43923213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):17, 66

               
               
               Conread position:49-378
               
               
               Cow position:chr5:65764892-65765217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):80, 22

               
               
               Conread position:49-384
               
               
               Cow position:chr5:4221219-4220886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 107

               
               
               Conread position:49-384
               
               
               Cow position:chr5:19278466-19278798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):101, 134

               
               
               Conread position:49-384
               
               
               Cow position:chr5:41713520-41713204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):147, 15

               
               
               Conread position:49-384
               
               
               Cow position:chr5:42050782-42050453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 47

               
               
               Conread position:49-384
               
               
               Cow position:chr5:44796498-44796830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):17, 68

               
               
               Conread position:49-384
               
               
               Cow position:chr5:56071095-56070758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 104

               
               
               Conread position:49-384
               
               
               Cow position:chr5:70951655-70951974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):24, 81

               
               
               Conread position:50-209
               
               
               Cow position:chr5:47335262-47335105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 96

               
               
               Conread position:50-220
               
               
               Cow position:chr5:67340117-67339949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:50-220
               
               
               Cow position:chr5:75478683-75478849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:50-224
               
               
               Cow position:chr5:43611935-43611760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):97, 41

               
               
               Conread position:50-225
               
               
               Cow position:chr5:25462321-25462149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):15, 94

               
               
               Conread position:50-228
               
               
               Cow position:chr5:64843727-64843913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:50-234
               
               
               Cow position:chr5:5808335-5808148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 139

               
               
               Conread position:50-238
               
               
               Cow position:chr5:46499798-46499608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):107, 137

               
               
               Conread position:50-244
               
               
               Cow position:chr5:2355753-2355562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 14

               
               
               Conread position:50-247
               
               
               Cow position:chr5:29829651-29829850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):98, 139

               
               
               Conread position:50-249
               
               
               Cow position:chr5:64492512-64492311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):104, 139

               
               
               Conread position:50-255
               
               
               Cow position:chr5:8736041-8736248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):112, 165

               
               
               Conread position:50-262
               
               
               Cow position:chr5:51289363-51289567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):8, 73

               
               
               Conread position:50-268
               
               
               Cow position:chr5:26167655-26167439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:50-271
               
               
               Cow position:chr5:44196694-44196915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):114, 93

               
               
               Conread position:50-282
               
               
               Cow position:chr5:12300147-12299914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 63

               
               
               Conread position:50-290
               
               
               Cow position:chr5:12654673-12654916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):128, 95

               
               
               Conread position:50-305
               
               
               Cow position:chr5:52138174-52137918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):86, 66

               
               
               Conread position:50-321
               
               
               Cow position:chr5:57101291-57101561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):214, 15

               
               
               Conread position:50-326
               
               
               Cow position:chr5:68537428-68537707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):79, 175

               
               
               Conread position:50-340
               
               
               Cow position:chr5:14344860-14345149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):96, 126

               
               
               Conread position:50-343
               
               
               Cow position:chr5:4120264-4119973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):52, 127

               
               
               Conread position:50-343
               
               
               Cow position:chr5:59081956-59082252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):104, 241

               
               
               Conread position:50-363
               
               
               Cow position:chr5:57755799-57756108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):129, 7

               
               
               Conread position:50-378
               
               
               Cow position:chr5:11667948-11668277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):78, 237

               
               
               Conread position:50-379
               
               
               Cow position:chr5:42845361-42845691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):115, 45

               
               
               Conread position:50-383
               
               
               Cow position:chr5:36038769-36039101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 58

               
               
               Conread position:50-383
               
               
               Cow position:chr5:50723283-50722951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):93, 7

               
               
               Conread position:50-384
               
               
               Cow position:chr5:12322575-12322899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 78

               
               
               Conread position:50-384
               
               
               Cow position:chr5:21829102-21828768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 43

               
               
               Conread position:50-384
               
               
               Cow position:chr5:25035018-25035341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 108

               
               
               Conread position:50-384
               
               
               Cow position:chr5:32338725-32339062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):76, 26

               
               
               Conread position:50-384
               
               
               Cow position:chr5:33560502-33560832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):107, 77

               
               
               Conread position:50-384
               
               
               Cow position:chr5:35208500-35208168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):14, 128

               
               
               Conread position:50-384
               
               
               Cow position:chr5:35969776-35969444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:242
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):85, 203

               
               
               Conread position:50-384
               
               
               Cow position:chr5:42670637-42670954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):190, 64

               
               
               Conread position:50-384
               
               
               Cow position:chr5:43858182-43858530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):76, 168

               
               
               Conread position:50-384
               
               
               Cow position:chr5:47316739-47317069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):80, 41

               
               
               Conread position:50-384
               
               
               Cow position:chr5:50858171-50857839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr5:52668274-52667932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):108, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr5:56014958-56014636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):212, 77

               
               
               Conread position:50-384
               
               
               Cow position:chr5:57934884-57935207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 76

               
               
               Conread position:50-384
               
               
               Cow position:chr5:60016400-60016069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 101

               
               
               Conread position:50-384
               
               
               Cow position:chr5:64139797-64139468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:50-384
               
               
               Cow position:chr5:72895924-72895590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 130

               
               
               Conread position:50-384
               
               
               Cow position:chr5:72903004-72903330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):115, 77

               
               
               Conread position:50-386
               
               
               Cow position:chr5:46681487-46681815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):99, 33

               
               
               Conread position:50-388
               
               
               Cow position:chr5:61914807-61914470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):106, 146

               
               
               Conread position:51-176
               
               
               Cow position:chr5:8149073-8149196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):8, 95

               
               
               Conread position:51-258
               
               
               Cow position:chr5:1693856-1694060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):10, 89

               
               
               Conread position:51-270
               
               
               Cow position:chr5:56860679-56860462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):15, 109

               
               
               Conread position:51-384
               
               
               Cow position:chr5:3582791-3582476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):9, 95

               
               
               Conread position:51-384
               
               
               Cow position:chr5:34562243-34561914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 6

               
               
               Conread position:51-384
               
               
               Cow position:chr5:65941016-65941348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 6

               
               
               Conread position:52-234
               
               
               Cow position:chr5:34918577-34918398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):85, 95

               
               
               Conread position:52-238
               
               
               Cow position:chr5:40531297-40531490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 183

               
               
               Conread position:52-273
               
               
               Cow position:chr5:65760300-65760518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):94, 121

               
               
               Conread position:52-275
               
               
               Cow position:chr5:7177386-7177161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:52-292
               
               
               Cow position:chr5:61049568-61049325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):92, 125

               
               
               Conread position:52-295
               
               
               Cow position:chr5:39036016-39035772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):75, 127

               
               
               Conread position:52-378
               
               
               Cow position:chr5:71015651-71015972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):82, 101

               
               
               Conread position:52-379
               
               
               Cow position:chr5:34976607-34976937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):97, 19

               
               
               Conread position:52-383
               
               
               Cow position:chr5:11427001-11427334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:52-384
               
               
               Cow position:chr5:14920692-14921028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 275

               
               
               Conread position:52-384
               
               
               Cow position:chr5:24995988-24996321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 13

               
               
               Conread position:52-384
               
               
               Cow position:chr5:35459062-35459392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):157, 81

               
               
               Conread position:52-384
               
               
               Cow position:chr5:44028077-44028399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 21

               
               
               Conread position:52-384
               
               
               Cow position:chr5:47602042-47601721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:53-216
               
               
               Cow position:chr5:47960032-47960191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:53-218
               
               
               Cow position:chr5:4824386-4824216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:53-219
               
               
               Cow position:chr5:9559647-9559488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 80

               
               
               Conread position:53-234
               
               
               Cow position:chr5:58401797-58401621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:53-239
               
               
               Cow position:chr5:61201994-61201806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 134

               
               
               Conread position:53-244
               
               
               Cow position:chr5:6876732-6876926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):90, 165

               
               
               Conread position:53-247
               
               
               Cow position:chr5:24915292-24915488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:53-249
               
               
               Cow position:chr5:7675924-7676118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):12, 93

               
               
               Conread position:53-267
               
               
               Cow position:chr5:54312832-54312619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):211, 19

               
               
               Conread position:53-273
               
               
               Cow position:chr5:52136819-52137042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):93, 123

               
               
               Conread position:53-289
               
               
               Cow position:chr5:22795439-22795213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):133, 41

               
               
               Conread position:53-297
               
               
               Cow position:chr5:35989997-35989747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 135

               
               
               Conread position:53-328
               
               
               Cow position:chr5:50101146-50101420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):111, 11

               
               
               Conread position:53-344
               
               
               Cow position:chr5:63241211-63240918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):74, 11

               
               
               Conread position:53-352
               
               
               Cow position:chr5:4280677-4280382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):196, 88

               
               
               Conread position:53-352
               
               
               Cow position:chr5:20288024-20288329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 236

               
               
               Conread position:53-352
               
               
               Cow position:chr5:26132863-26133153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:53-364
               
               
               Cow position:chr5:49668716-49668400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):91, 42

               
               
               Conread position:53-371
               
               
               Cow position:chr5:32394835-32394516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):100, 135

               
               
               Conread position:53-376
               
               
               Cow position:chr5:45472509-45472184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):8, 34

               
               
               Conread position:53-379
               
               
               Cow position:chr5:17999264-17999585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:53-382
               
               
               Cow position:chr5:66339308-66338983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):11, 76

               
               
               Conread position:53-384
               
               
               Cow position:chr5:58697-59027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):94, 125

               
               
               Conread position:53-384
               
               
               Cow position:chr5:12557052-12557390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 241

               
               
               Conread position:53-384
               
               
               Cow position:chr5:16025250-16025555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):213, 73

               
               
               Conread position:53-384
               
               
               Cow position:chr5:18289351-18289031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):252, 88

               
               
               Conread position:53-384
               
               
               Cow position:chr5:21525393-21525070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):99, 33

               
               
               Conread position:53-384
               
               
               Cow position:chr5:25495118-25495449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):85, 36

               
               
               Conread position:53-384
               
               
               Cow position:chr5:26467860-26467525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 33

               
               
               Conread position:53-384
               
               
               Cow position:chr5:32153079-32153413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:53-384
               
               
               Cow position:chr5:61576779-61576443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):101, 25

               
               
               Conread position:53-384
               
               
               Cow position:chr5:64321994-64321655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 72

               
               
               Conread position:53-385
               
               
               Cow position:chr5:5257054-5257392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):69, 102

               
               
               Conread position:54-209
               
               
               Cow position:chr5:34639356-34639199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:54-213
               
               
               Cow position:chr5:64061245-64061092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:54-219
               
               
               Cow position:chr5:63300310-63300145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):92, 85

               
               
               Conread position:54-238
               
               
               Cow position:chr5:41226772-41226958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):96, 128

               
               
               Conread position:54-257
               
               
               Cow position:chr5:6086109-6086314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:54-332
               
               
               Cow position:chr5:15364102-15363834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):215, 72

               
               
               Conread position:54-345
               
               
               Cow position:chr5:33032400-33032114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):66, 40

               
               
               Conread position:54-378
               
               
               Cow position:chr5:57101565-57101866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):142, 38

               
               
               Conread position:54-378
               
               
               Cow position:chr5:71845694-71846012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):203, 34

               
               
               Conread position:54-383
               
               
               Cow position:chr5:21617687-21617361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 93

               
               
               Conread position:54-384
               
               
               Cow position:chr5:24349347-24349009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):62, 146

               
               
               Conread position:54-384
               
               
               Cow position:chr5:49920157-49919824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):95, 19

               
               
               Conread position:54-384
               
               
               Cow position:chr5:55068932-55068612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):212, 44

               
               
               Conread position:54-384
               
               
               Cow position:chr5:55177114-55176792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):13, 50

               
               
               Conread position:54-384
               
               
               Cow position:chr5:55956142-55955811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 105

               
               
               Conread position:54-384
               
               
               Cow position:chr5:62107253-62107589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):102, 11

               
               
               Conread position:54-385
               
               
               Cow position:chr5:56877703-56877388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):15, 69

               
               
               Conread position:55-246
               
               
               Cow position:chr5:21339029-21339229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:55-344
               
               
               Cow position:chr5:70271098-70270801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):85, 91

               
               
               Conread position:55-352
               
               
               Cow position:chr5:30805388-30805102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):45, 24

               
               
               Conread position:56-235
               
               
               Cow position:chr5:60207935-60207759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:56-249
               
               
               Cow position:chr5:12562530-12562723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):153, 86

               
               
               Conread position:56-274
               
               
               Cow position:chr5:51298485-51298701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):208, 84

               
               
               Conread position:56-348
               
               
               Cow position:chr5:41935425-41935719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):88, 121

               
               
               Conread position:56-365
               
               
               Cow position:chr5:18574412-18574095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 165

               
               
               Conread position:56-378
               
               
               Cow position:chr5:43391255-43390940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:212
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):157, 14

               
               
               Conread position:56-384
               
               
               Cow position:chr5:991704-991368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 252

               
               
               Conread position:56-384
               
               
               Cow position:chr5:52164943-52165277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 136

               
               
               Conread position:56-384
               
               
               Cow position:chr5:74643454-74643769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 86

               
               
               Conread position:57-203
               
               
               Cow position:chr5:48104489-48104344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):123, 88

               
               
               Conread position:57-216
               
               
               Cow position:chr5:12504565-12504720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:57-217
               
               
               Cow position:chr5:69765805-69765965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-220
               
               
               Cow position:chr5:6245436-6245597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:57-220
               
               
               Cow position:chr5:52849310-52849151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:57-225
               
               
               Cow position:chr5:34787801-34787635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:57-255
               
               
               Cow position:chr5:3677957-3677754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):70, 169

               
               
               Conread position:57-262
               
               
               Cow position:chr5:75760039-75760250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 172

               
               
               Conread position:57-270
               
               
               Cow position:chr5:65552492-65552696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):111, 37

               
               
               Conread position:57-272
               
               
               Cow position:chr5:75227984-75228186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):207, 65

               
               
               Conread position:57-299
               
               
               Cow position:chr5:74039777-74040017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):228, 60

               
               
               Conread position:57-327
               
               
               Cow position:chr5:49341806-49342090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):72, 242

               
               
               Conread position:57-344
               
               
               Cow position:chr5:61456076-61455787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):30, 103

               
               
               Conread position:57-378
               
               
               Cow position:chr5:7057168-7057492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):102, 133

               
               
               Conread position:57-378
               
               
               Cow position:chr5:47757001-47756684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):96, 131

               
               
               Conread position:57-380
               
               
               Cow position:chr5:17086788-17087119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 159

               
               
               Conread position:57-384
               
               
               Cow position:chr5:22242545-22242872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 58

               
               
               Conread position:57-384
               
               
               Cow position:chr5:29828277-29827951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):97, 128

               
               
               Conread position:57-384
               
               
               Cow position:chr5:29895400-29895100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):196, 0

               
               
               Conread position:57-384
               
               
               Cow position:chr5:45225593-45225923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):135, 19

               
               
               Conread position:57-384
               
               
               Cow position:chr5:45845461-45845790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 88

               
               
               Conread position:57-384
               
               
               Cow position:chr5:52905268-52905592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):92, 103

               
               
               Conread position:57-384
               
               
               Cow position:chr5:62172627-62172318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 38

               
               
               Conread position:58-220
               
               
               Cow position:chr5:5030667-5030509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):96, 56

               
               
               Conread position:58-235
               
               
               Cow position:chr5:36634936-36634757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):98, 131

               
               
               Conread position:58-244
               
               
               Cow position:chr5:46421826-46421628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:58-248
               
               
               Cow position:chr5:35394211-35394395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:58-274
               
               
               Cow position:chr5:59627320-59627111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):206, 33

               
               
               Conread position:58-344
               
               
               Cow position:chr5:66366738-66366449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):19, 94

               
               
               Conread position:58-348
               
               
               Cow position:chr5:11769500-11769206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):71, 97

               
               
               Conread position:58-352
               
               
               Cow position:chr5:6438798-6439099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):178, 12

               
               
               Conread position:58-375
               
               
               Cow position:chr5:52831706-52831379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 90

               
               
               Conread position:58-383
               
               
               Cow position:chr5:53835949-53835617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 152

               
               
               Conread position:58-384
               
               
               Cow position:chr5:41165310-41164988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 82

               
               
               Conread position:58-384
               
               
               Cow position:chr5:56524390-56524077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):135, 69

               
               
               Conread position:59-200
               
               
               Cow position:chr5:74050051-74049910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-212
               
               
               Cow position:chr5:58487600-58487449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):105, 68

               
               
               Conread position:59-230
               
               
               Cow position:chr5:21721249-21721414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:59-247
               
               
               Cow position:chr5:43465754-43465564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 128

               
               
               Conread position:59-251
               
               
               Cow position:chr5:3817460-3817652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-259
               
               
               Cow position:chr5:19079470-19079279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:59-262
               
               
               Cow position:chr5:35190333-35190134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:158
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:59-274
               
               
               Cow position:chr5:17828250-17828468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):93, 135

               
               
               Conread position:59-274
               
               
               Cow position:chr5:36143205-36142998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):133, 34

               
               
               Conread position:59-274
               
               
               Cow position:chr5:60948359-60948144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):205, 163

               
               
               Conread position:59-296
               
               
               Cow position:chr5:56059837-56060081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):45, 133

               
               
               Conread position:59-300
               
               
               Cow position:chr5:39815273-39815504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):85, 33

               
               
               Conread position:59-332
               
               
               Cow position:chr5:45405274-45404995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):20, 129

               
               
               Conread position:59-345
               
               
               Cow position:chr5:63627313-63627584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):205, 21

               
               
               Conread position:59-347
               
               
               Cow position:chr5:34625175-34624896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):168, 83

               
               
               Conread position:59-348
               
               
               Cow position:chr5:43604366-43604081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):87, 117

               
               
               Conread position:59-355
               
               
               Cow position:chr5:44921159-44921466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):102, 251

               
               
               Conread position:59-357
               
               
               Cow position:chr5:1247490-1247193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 35

               
               
               Conread position:59-379
               
               
               Cow position:chr5:64140765-64140440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):174, 228

               
               
               Conread position:59-383
               
               
               Cow position:chr5:6838852-6839172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):85, 21

               
               
               Conread position:59-384
               
               
               Cow position:chr5:12902146-12901817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):87, 128

               
               
               Conread position:59-384
               
               
               Cow position:chr5:19778339-19778678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):76, 140

               
               
               Conread position:59-384
               
               
               Cow position:chr5:30303108-30302795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 84

               
               
               Conread position:59-384
               
               
               Cow position:chr5:30628926-30629256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 113

               
               
               Conread position:59-384
               
               
               Cow position:chr5:39333302-39333637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):61, 93

               
               
               Conread position:59-384
               
               
               Cow position:chr5:66582197-66581865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:239
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):68, 227

               
               
               Conread position:59-387
               
               
               Cow position:chr5:50575995-50575683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):205, 15

               
               
               Conread position:60-231
               
               
               Cow position:chr5:30492565-30492739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):92, 128

               
               
               Conread position:60-247
               
               
               Cow position:chr5:41736408-41736221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:60-249
               
               
               Cow position:chr5:74887673-74887863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:60-252
               
               
               Cow position:chr5:62996185-62995991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):86, 127

               
               
               Conread position:60-255
               
               
               Cow position:chr5:15991419-15991608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:60-255
               
               
               Cow position:chr5:57399025-57399221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 129

               
               
               Conread position:60-260
               
               
               Cow position:chr5:29172217-29172013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 135

               
               
               Conread position:60-260
               
               
               Cow position:chr5:34288028-34288224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:60-262
               
               
               Cow position:chr5:59335999-59335793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 124

               
               
               Conread position:60-320
               
               
               Cow position:chr5:62812053-62811789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):89, 128

               
               
               Conread position:60-332
               
               
               Cow position:chr5:63192528-63192788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):204, 85

               
               
               Conread position:60-355
               
               
               Cow position:chr5:37090411-37090708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 118

               
               
               Conread position:60-369
               
               
               Cow position:chr5:43403135-43402817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 113

               
               
               Conread position:60-377
               
               
               Cow position:chr5:63647251-63647565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):89, 127

               
               
               Conread position:60-378
               
               
               Cow position:chr5:31475910-31475592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):87, 127

               
               
               Conread position:60-383
               
               
               Cow position:chr5:12434761-12434438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):204, 68

               
               
               Conread position:60-383
               
               
               Cow position:chr5:33834266-33833948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:226
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):103, 125

               
               
               Conread position:60-383
               
               
               Cow position:chr5:39937342-39937010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):117, 19

               
               
               Conread position:60-383
               
               
               Cow position:chr5:42064433-42064106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:60-384
               
               
               Cow position:chr5:37941581-37941888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 87

               
               
               Conread position:60-384
               
               
               Cow position:chr5:41009784-41010091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):79, 108

               
               
               Conread position:60-384
               
               
               Cow position:chr5:44446649-44446966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 67

               
               
               Conread position:60-384
               
               
               Cow position:chr5:49474328-49474643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 87

               
               
               Conread position:60-384
               
               
               Cow position:chr5:54048124-54048449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 118

               
               
               Conread position:60-384
               
               
               Cow position:chr5:56028319-56028625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 80

               
               
               Conread position:60-384
               
               
               Cow position:chr5:56548792-56548480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):206, 80

               
               
               Conread position:60-394
               
               
               Cow position:chr5:28302530-28302856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):186, 32

               
               
               Conread position:61-224
               
               
               Cow position:chr5:57447439-57447604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):85, 126

               
               
               Conread position:61-238
               
               
               Cow position:chr5:56525485-56525664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):86, 126

               
               
               Conread position:61-246
               
               
               Cow position:chr5:70591767-70591594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:61-262
               
               
               Cow position:chr5:37842054-37842255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):72, 84

               
               
               Conread position:61-299
               
               
               Cow position:chr5:73253630-73253398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):206, 84

               
               
               Conread position:61-329
               
               
               Cow position:chr5:69099944-69099675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 92

               
               
               Conread position:61-348
               
               
               Cow position:chr5:7012624-7012910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 93

               
               
               Conread position:61-348
               
               
               Cow position:chr5:30247300-30247586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):203, 110

               
               
               Conread position:61-378
               
               
               Cow position:chr5:59384461-59384782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):56, 47

               
               
               Conread position:61-384
               
               
               Cow position:chr5:16893553-16893870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 60

               
               
               Conread position:61-384
               
               
               Cow position:chr5:35763469-35763177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):204, 25

               
               
               Conread position:61-384
               
               
               Cow position:chr5:38833339-38833025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 30

               
               
               Conread position:61-386
               
               
               Cow position:chr5:55756188-55756525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:61-389
               
               
               Cow position:chr5:30233135-30232796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 99

               
               
               Conread position:61-397
               
               
               Cow position:chr5:11229446-11229778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 47

               
               
               Conread position:62-274
               
               
               Cow position:chr5:53935330-53935536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 64

               
               
               Conread position:62-378
               
               
               Cow position:chr5:12760896-12761204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):87, 120

               
               
               Conread position:62-384
               
               
               Cow position:chr5:14314740-14314427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 60

               
               
               Conread position:62-384
               
               
               Cow position:chr5:17767931-17768242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):168, 9

               
               
               Conread position:62-384
               
               
               Cow position:chr5:27155226-27154925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):39, 61

               
               
               Conread position:62-384
               
               
               Cow position:chr5:30253964-30253643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 66

               
               
               Conread position:62-384
               
               
               Cow position:chr5:30276911-30276599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 81

               
               
               Conread position:62-384
               
               
               Cow position:chr5:40109708-40109401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 65

               
               
               Conread position:63-213
               
               
               Cow position:chr5:19626799-19626651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:63-343
               
               
               Cow position:chr5:55259631-55259363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):153, 93

               
               
               Conread position:63-384
               
               
               Cow position:chr5:11539829-11540146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):83, 122

               
               
               Conread position:64-225
               
               
               Cow position:chr5:66287163-66287006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:64-255
               
               
               Cow position:chr5:29256486-29256676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):85, 117

               
               
               Conread position:64-262
               
               
               Cow position:chr5:44722291-44722488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:64-283
               
               
               Cow position:chr5:60523949-60523735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):78, 63

               
               
               Conread position:64-355
               
               
               Cow position:chr5:12247520-12247816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:64-384
               
               
               Cow position:chr5:16214903-16214587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):200, 87

               
               
               Conread position:65-232
               
               
               Cow position:chr5:74065299-74065463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:65-257
               
               
               Cow position:chr5:44734506-44734696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:65-291
               
               
               Cow position:chr5:72045456-72045680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):78, 21

               
               
               Conread position:65-384
               
               
               Cow position:chr5:22667291-22666995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):230, 86

               
               
               Conread position:65-384
               
               
               Cow position:chr5:65776156-65776480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):58, 48

               
               
               Conread position:68-320
               
               
               Cow position:chr5:66466531-66466284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):161, 25

               
               
               Conread position:68-336
               
               
               Cow position:chr5:49501600-49501875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):78, 223

               
               
               Conread position:68-367
               
               
               Cow position:chr5:66551674-66551980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):54, 90

               
               
               Conread position:68-384
               
               
               Cow position:chr5:12351594-12351886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 79

               
               
               Conread position:68-384
               
               
               Cow position:chr5:47696242-47696540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):196, 58

               
               
               Conread position:68-384
               
               
               Cow position:chr5:50600264-50599958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 78

               
               
               Conread position:68-384
               
               
               Cow position:chr5:67932248-67932562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):76, 192

               
               
               Conread position:68-397
               
               
               Cow position:chr5:65136475-65136165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):197, 18

               
               
               Conread position:69-332
               
               
               Cow position:chr5:61784508-61784774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):75, 114

               
               
               Conread position:69-372
               
               
               Cow position:chr5:61771339-61771028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):68, 119

               
               
               Conread position:69-377
               
               
               Cow position:chr5:34050325-34050025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):190, 75

               
               
               Conread position:69-384
               
               
               Cow position:chr5:53947116-53946797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):77, 109

               
               
               Conread position:70-355
               
               
               Cow position:chr5:72006281-72006561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:211
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):196, 24

               
               
               Conread position:72-220
               
               
               Cow position:chr5:4981659-4981516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:72-240
               
               
               Cow position:chr5:65745554-65745719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:72-257
               
               
               Cow position:chr5:16668907-16668726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:72-318
               
               
               Cow position:chr5:48867256-48867493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):187, 72

               
               
               Conread position:72-348
               
               
               Cow position:chr5:34108843-34109121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):116, 136

               
               
               Conread position:72-352
               
               
               Cow position:chr5:35123307-35123580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):92, 49

               
               
               Conread position:72-378
               
               
               Cow position:chr5:63234609-63234921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):60, 173

               
               
               Conread position:72-383
               
               
               Cow position:chr5:45397779-45397481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 22

               
               
               Conread position:72-383
               
               
               Cow position:chr5:57328011-57327699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):92, 66

               
               
               Conread position:72-383
               
               
               Cow position:chr5:68605077-68604761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):65, 122

               
               
               Conread position:72-384
               
               
               Cow position:chr5:17062865-17063188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):74, 123

               
               
               Conread position:72-384
               
               
               Cow position:chr5:68719081-68718776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):83, 36

               
               
               Conread position:72-395
               
               
               Cow position:chr5:17554821-17555137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 68

               
               
               Conread position:73-272
               
               
               Cow position:chr5:3743539-3743335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:73-289
               
               
               Cow position:chr5:5017584-5017370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):123, 20

               
               
               Conread position:73-384
               
               
               Cow position:chr5:33414195-33414510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):96, 87

               
               
               Conread position:74-244
               
               
               Cow position:chr5:60741457-60741286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 101

               
               
               Conread position:74-255
               
               
               Cow position:chr5:20812761-20812577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):64, 110

               
               
               Conread position:74-258
               
               
               Cow position:chr5:6695761-6695577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 105

               
               
               Conread position:74-265
               
               
               Cow position:chr5:38040356-38040543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):92, 65

               
               
               Conread position:74-368
               
               
               Cow position:chr5:26097502-26097214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):75, 111

               
               
               Conread position:74-384
               
               
               Cow position:chr5:12673268-12673560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):188, 82

               
               
               Conread position:74-384
               
               
               Cow position:chr5:20779187-20779484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):190, 77

               
               
               Conread position:74-384
               
               
               Cow position:chr5:29352920-29353226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):190, 49

               
               
               Conread position:74-384
               
               
               Cow position:chr5:37646287-37645976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):151, 50

               
               
               Conread position:76-384
               
               
               Cow position:chr5:15721878-15722164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):188, 18

               
               
               Conread position:76-384
               
               
               Cow position:chr5:44053836-44054133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 87

               
               
               Conread position:76-384
               
               
               Cow position:chr5:64523654-64523965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):73, 80

               
               
               Conread position:79-274
               
               
               Cow position:chr5:16939385-16939583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):70, 111

               
               
               Conread position:79-378
               
               
               Cow position:chr5:64137465-64137162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):83, 97

               
               
               Conread position:79-384
               
               
               Cow position:chr5:35826805-35826505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 65

               
               
               Conread position:79-384
               
               
               Cow position:chr5:64168030-64168338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):75, 145

               
               
               Conread position:79-384
               
               
               Cow position:chr5:64697995-64697685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):65, 148

               
               
               Conread position:80-273
               
               
               Cow position:chr5:46704094-46704287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):184, 67

               
               
               Conread position:80-384
               
               
               Cow position:chr5:6503670-6503978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:80-384
               
               
               Cow position:chr5:57419590-57419890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):91, 66

               
               
               Conread position:81-378
               
               
               Cow position:chr5:50482653-50482956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):68, 108

               
               
               Conread position:81-384
               
               
               Cow position:chr5:74580992-74580698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):219, 71

               
               
               Conread position:82-365
               
               
               Cow position:chr5:69636414-69636156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):6, 37

               
               
               Conread position:83-330
               
               
               Cow position:chr5:38068467-38068710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):63, 108

               
               
               Conread position:83-384
               
               
               Cow position:chr5:48829358-48829060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 92

               
               
               Conread position:86-376
               
               
               Cow position:chr5:47703925-47704217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):92, 58

               
               
               Conread position:87-282
               
               
               Cow position:chr5:21223509-21223327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):24, 36

               
               
               Conread position:87-329
               
               
               Cow position:chr5:55795771-55796008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):134, 56

               
               
               Conread position:87-376
               
               
               Cow position:chr5:54350172-54350453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):84, 35

               
               
               Conread position:88-321
               
               
               Cow position:chr5:57686543-57686776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):176, 53

               
               
               Conread position:90-287
               
               
               Cow position:chr5:38169089-38168892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:6.99949e-42
               
               
               Alignm gaps (pig, cow):87, 57

               
               
               Conread position:91-346
               
               
               Cow position:chr5:61007262-61007006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 40

               
               
               Conread position:95-233
               
               
               Cow position:chr5:52192242-52192376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:95-384
               
               
               Cow position:chr5:55232628-55232893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 32

               
               
               Conread position:96-327
               
               
               Cow position:chr5:17602015-17602242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):186, 139

               
               
               Conread position:97-378
               
               
               Cow position:chr5:71495011-71494728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):30, 237

               
               
               Conread position:98-383
               
               
               Cow position:chr5:60747091-60747375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):23, 91

               
               
               Conread position:99-288
               
               
               Cow position:chr5:17604949-17605137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):73, 42

               
               
               Conread position:100-344
               
               
               Cow position:chr5:7193599-7193362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):162, 45

               
               
               Conread position:106-382
               
               
               Cow position:chr5:7755383-7755658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):23, 79

               
               
               Conread position:114-261
               
               
               Cow position:chr5:51490429-51490577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:117-332
               
               
               Cow position:chr5:67118587-67118372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):76, 35

               
               
               Conread position:125-384
               
               
               Cow position:chr5:43457372-43457614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):82, 21

               
               
               Conread position:127-378
               
               
               Cow position:chr5:14473244-14473505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:128-282
               
               
               Cow position:chr5:24069545-24069393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):136, 31

               
               
               Conread position:128-296
               
               
               Cow position:chr5:9233832-9234000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:128-325
               
               
               Cow position:chr5:61102874-61102675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):112, 124

               
               
               Conread position:128-327
               
               
               Cow position:chr5:27306464-27306262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 132

               
               
               Conread position:128-332
               
               
               Cow position:chr5:58555295-58555094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):136, 149

               
               
               Conread position:128-368
               
               
               Cow position:chr5:59872924-59873173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):58, 18

               
               
               Conread position:128-376
               
               
               Cow position:chr5:63987289-63987535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):136, 23

               
               
               Conread position:128-377
               
               
               Cow position:chr5:54767753-54768000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:128-383
               
               
               Cow position:chr5:50533230-50533484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):101, 87

               
               
               Conread position:128-384
               
               
               Cow position:chr5:4031830-4032092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 24

               
               
               Conread position:128-384
               
               
               Cow position:chr5:34301072-34300818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):71, 18

               
               
               Conread position:128-385
               
               
               Cow position:chr5:4709994-4710245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):136, 99

               
               
               Conread position:128-385
               
               
               Cow position:chr5:64591939-64592194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-386
               
               
               Cow position:chr5:73418131-73418383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 125

               
               
               Conread position:129-343
               
               
               Cow position:chr5:40242199-40241985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):133, 22

               
               
               Conread position:129-378
               
               
               Cow position:chr5:1087045-1087288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):131, 32

               
               
               Conread position:129-378
               
               
               Cow position:chr5:21039830-21040065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):137, 10

               
               
               Conread position:129-384
               
               
               Cow position:chr5:5110914-5111173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:197
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):63, 17

               
               
               Conread position:129-384
               
               
               Cow position:chr5:16206000-16206253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):79, 23

               
               
               Conread position:129-384
               
               
               Cow position:chr5:43992481-43992223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):135, 156

               
               
               Conread position:129-384
               
               
               Cow position:chr5:50821944-50821684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 169

               
               
               Conread position:130-383
               
               
               Cow position:chr5:34441625-34441888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):130, 23

               
               
               Conread position:130-384
               
               
               Cow position:chr5:30949759-30950014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 23

               
               
               Conread position:130-384
               
               
               Cow position:chr5:37189941-37190194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 58

               
               
               Conread position:131-282
               
               
               Cow position:chr5:4166797-4166645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):13, 58

               
               
               Conread position:131-313
               
               
               Cow position:chr5:57230184-57230367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-342
               
               
               Cow position:chr5:56338866-56339074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):131, 161

               
               
               Conread position:131-348
               
               
               Cow position:chr5:29912576-29912357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:131-355
               
               
               Cow position:chr5:67212513-67212287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):133, 24

               
               
               Conread position:131-369
               
               
               Cow position:chr5:45419982-45420221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):133, 142

               
               
               Conread position:131-382
               
               
               Cow position:chr5:9089873-9090116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):133, 48

               
               
               Conread position:131-383
               
               
               Cow position:chr5:44726178-44726423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:131-384
               
               
               Cow position:chr5:23168671-23168923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 226

               
               
               Conread position:131-384
               
               
               Cow position:chr5:44752152-44752409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:180
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:131-384
               
               
               Cow position:chr5:46509709-46509964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):27, 235

               
               
               Conread position:131-384
               
               
               Cow position:chr5:49440721-49440970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):132, 29

               
               
               Conread position:131-384
               
               
               Cow position:chr5:55019448-55019195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):23, 155

               
               
               Conread position:131-385
               
               
               Cow position:chr5:26476863-26477111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:131-385
               
               
               Cow position:chr5:37646389-37646647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):133, 63

               
               
               Conread position:131-385
               
               
               Cow position:chr5:43929581-43929836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):133, 114

               
               
               Conread position:131-385
               
               
               Cow position:chr5:54060431-54060176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):132, 102

               
               
               Conread position:131-385
               
               
               Cow position:chr5:61810926-61810687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:132-313
               
               
               Cow position:chr5:61875689-61875515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):171, 14

               
               
               Conread position:132-367
               
               
               Cow position:chr5:458642-458410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):132, 75

               
               
               Conread position:132-384
               
               
               Cow position:chr5:23678549-23678802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):134, 51

               
               
               Conread position:132-384
               
               
               Cow position:chr5:25230865-25231102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):160, 46

               
               
               Conread position:132-384
               
               
               Cow position:chr5:36855360-36855106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):101, 165

               
               
               Conread position:132-384
               
               
               Cow position:chr5:41294233-41293982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):32, 15

               
               
               Conread position:132-384
               
               
               Cow position:chr5:45574772-45574517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):118, 14

               
               
               Conread position:132-384
               
               
               Cow position:chr5:54311490-54311234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:132-384
               
               
               Cow position:chr5:58446960-58446705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):132, 19

               
               
               Conread position:132-384
               
               
               Cow position:chr5:62378934-62378693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):132, 87

               
               
               Conread position:133-265
               
               
               Cow position:chr5:55850033-55849906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 28

               
               
               Conread position:133-299
               
               
               Cow position:chr5:9170433-9170593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):131, 26

               
               
               Conread position:133-348
               
               
               Cow position:chr5:41545740-41545956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):131, 148

               
               
               Conread position:133-378
               
               
               Cow position:chr5:19524051-19523808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:133-378
               
               
               Cow position:chr5:50215413-50215647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:133-378
               
               
               Cow position:chr5:53710538-53710782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:133-381
               
               
               Cow position:chr5:63426852-63427103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 7

               
               
               Conread position:133-384
               
               
               Cow position:chr5:7698151-7697907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:133-384
               
               
               Cow position:chr5:35126206-35125955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):133, 19

               
               
               Conread position:134-274
               
               
               Cow position:chr5:35647495-35647354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:134-378
               
               
               Cow position:chr5:49685127-49685362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):130, 12

               
               
               Conread position:134-384
               
               
               Cow position:chr5:26990540-26990294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):150, 52

               
               
               Conread position:134-384
               
               
               Cow position:chr5:39258656-39258423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):130, 17

               
               
               Conread position:134-384
               
               
               Cow position:chr5:45273350-45273599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 34

               
               
               Conread position:134-384
               
               
               Cow position:chr5:57575925-57575671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:134-384
               
               
               Cow position:chr5:63865958-63865697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):20, 98

               
               
               Conread position:134-442
               
               
               Cow position:chr5:54375352-54375658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:135-268
               
               
               Cow position:chr5:5847697-5847827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:135-348
               
               
               Cow position:chr5:63150019-63150229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):129, 12

               
               
               Conread position:135-378
               
               
               Cow position:chr5:54086687-54086451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:137-378
               
               
               Cow position:chr5:13717424-13717659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):130, 15

               
               
               Conread position:137-378
               
               
               Cow position:chr5:56680405-56680158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):78, 153

               
               
               Conread position:141-326
               
               
               Cow position:chr5:35982592-35982781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-33
               
               
               Alignm gaps (pig, cow):69, 146

               
               
               Conread position:142-384
               
               
               Cow position:chr5:58793461-58793712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 146

               
               
               Conread position:146-368
               
               
               Cow position:chr5:47323602-47323383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):118, 104

               
               
               Conread position:146-377
               
               
               Cow position:chr5:37808523-37808760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):118, 184

               
               
               Conread position:146-378
               
               
               Cow position:chr5:65886871-65887098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 21

               
               
               Conread position:146-384
               
               
               Cow position:chr5:6683227-6683453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):117, 86

               
               
               Conread position:146-384
               
               
               Cow position:chr5:44993909-44994136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):118, 73

               
               
               Conread position:146-389
               
               
               Cow position:chr5:69731640-69731404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):151, 75

               
               
               Conread position:147-331
               
               
               Cow position:chr5:56153755-56153569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):7, 65

               
               
               Conread position:147-334
               
               
               Cow position:chr5:56517243-56517054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):98, 76

               
               
               Conread position:147-343
               
               
               Cow position:chr5:22643093-22643282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):117, 68

               
               
               Conread position:147-368
               
               
               Cow position:chr5:27411262-27411476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):22, 28

               
               
               Conread position:147-377
               
               
               Cow position:chr5:28945921-28946154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):35, 41

               
               
               Conread position:147-380
               
               
               Cow position:chr5:72564903-72564666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-34
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:147-384
               
               
               Cow position:chr5:14629666-14629911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:147-384
               
               
               Cow position:chr5:17028234-17027999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):22, 42

               
               
               Conread position:147-384
               
               
               Cow position:chr5:74016079-74015842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):119, 93

               
               
               Conread position:148-383
               
               
               Cow position:chr5:20422055-20422281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):25, 33

               
               
               Conread position:148-384
               
               
               Cow position:chr5:6045434-6045193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):88, 139

               
               
               Conread position:149-384
               
               
               Cow position:chr5:52000355-52000124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):120, 52

               
               
               Conread position:150-349
               
               
               Cow position:chr5:26150286-26150484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):114, 11

               
               
               Conread position:151-385
               
               
               Cow position:chr5:27171858-27172080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:152-348
               
               
               Cow position:chr5:1461223-1461025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):112, 134

               
               
               Conread position:152-378
               
               
               Cow position:chr5:56467823-56467608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):114, 13

               
               
               Conread position:152-383
               
               
               Cow position:chr5:6286299-6286521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):115, 133

               
               
               Conread position:152-383
               
               
               Cow position:chr5:29903389-29903619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):112, 133

               
               
               Conread position:152-388
               
               
               Cow position:chr5:45804194-45803961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:152-388
               
               
               Cow position:chr5:63992038-63992265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):111, 136

               
               
               Conread position:153-384
               
               
               Cow position:chr5:20783755-20783526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):54, 86

               
               
               Conread position:153-384
               
               
               Cow position:chr5:37814759-37814525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):162, 216

               
               
               Conread position:153-384
               
               
               Cow position:chr5:72951977-72951743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):111, 200

               
               
               Conread position:154-328
               
               
               Cow position:chr5:40237343-40237171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):127, 113

               
               
               Conread position:154-384
               
               
               Cow position:chr5:15426670-15426431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):39, 24

               
               
               Conread position:155-368
               
               
               Cow position:chr5:23529152-23529362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):111, 19

               
               
               Conread position:155-384
               
               
               Cow position:chr5:62142807-62142572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):109, 198

               
               
               Conread position:155-384
               
               
               Cow position:chr5:64758636-64758870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:156-384
               
               
               Cow position:chr5:15598108-15598331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):107, 40

               
               
               Conread position:156-384
               
               
               Cow position:chr5:39875254-39875025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):108, 159

               
               
               Conread position:156-397
               
               
               Cow position:chr5:28927464-28927698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):93, 60

               
               
               Conread position:160-366
               
               
               Cow position:chr5:57639849-57640049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):131, 26

               
               
               Conread position:161-279
               
               
               Cow position:chr5:12169644-12169762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):102, 92

               
               
               Conread position:161-383
               
               
               Cow position:chr5:48009734-48009946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):160, 96

               
               
               Conread position:161-384
               
               
               Cow position:chr5:57737224-57737012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):103, 116

               
               
               Conread position:161-384
               
               
               Cow position:chr5:58856227-58856005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):144, 54

               
               
               Conread position:162-384
               
               
               Cow position:chr5:42744904-42744690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):102, 25

               
               
               Conread position:164-383
               
               
               Cow position:chr5:65588821-65588606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):100, 87

               
               
               Conread position:167-330
               
               
               Cow position:chr5:20407559-20407725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):97, 121

               
               
               Conread position:168-384
               
               
               Cow position:chr5:32696705-32696919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):96, 33

               
               
               Conread position:169-366
               
               
               Cow position:chr5:31640542-31640340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:170-384
               
               
               Cow position:chr5:52644965-52645177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):94, 13

               
               
               Conread position:174-352
               
               
               Cow position:chr5:55929056-55928875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:174-380
               
               
               Cow position:chr5:62639016-62638813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:174-384
               
               
               Cow position:chr5:56636007-56635802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):90, 99

               
               
               Conread position:179-383
               
               
               Cow position:chr5:43737856-43738051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:181-378
               
               
               Cow position:chr5:8162712-8162912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:190-378
               
               
               Cow position:chr5:57561619-57561428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:190-384
               
               
               Cow position:chr5:16509202-16508997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:190-384
               
               
               Cow position:chr5:40039670-40039868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):28, 57

               
               
               Conread position:190-384
               
               
               Cow position:chr5:56518126-56518308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:190-384
               
               
               Cow position:chr5:56820168-56820360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 24

               
               
               Conread position:190-384
               
               
               Cow position:chr5:69520987-69520795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):74, 93

               
               
               Conread position:191-384
               
               
               Cow position:chr5:65883677-65883874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:192-378
               
               
               Cow position:chr5:51935283-51935101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:194-384
               
               
               Cow position:chr5:65601549-65601362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:196-333
               
               
               Cow position:chr5:29371580-29371441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:201-384
               
               
               Cow position:chr5:31144702-31144885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):63, 86

               
               
               Conread position:203-384
               
               
               Cow position:chr5:34638967-34638786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):64, 81

               
               
               Conread position:208-384
               
               
               Cow position:chr5:32140630-32140806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 81

               
               
               Conread position:212-384
               
               
               Cow position:chr5:6670119-6670292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):52, 82

               
               
               Conread position:233-387
               
               
               Cow position:chr5:51800919-51801074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 52

               
               
               Conread position:236-384
               
               
               Cow position:chr5:34916181-34916041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 62

               
               
               Conread position:240-384
               
               
               Cow position:chr5:27015726-27015586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):24, 45

               
               
               Conread position:1-368
               
               
               Cow position:chr6:16746642-16746275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):153, 52

               
               
               Conread position:1-369
               
               
               Cow position:chr6:22215154-22215537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):34, 254

               
               
               Conread position:1-378
               
               
               Cow position:chr6:10176004-10176374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):115, 49

               
               
               Conread position:1-384
               
               
               Cow position:chr6:17997020-17997399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:268
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):141, 56

               
               
               Conread position:2-278
               
               
               Cow position:chr6:66839492-66839219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):16, 31

               
               
               Conread position:2-377
               
               
               Cow position:chr6:5095238-5095624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:265
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):23, 96

               
               
               Conread position:2-381
               
               
               Cow position:chr6:23024808-23025193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:265
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):145, 51

               
               
               Conread position:2-382
               
               
               Cow position:chr6:67215041-67214662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):131, 35

               
               
               Conread position:3-244
               
               
               Cow position:chr6:15587299-15587539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 17

               
               
               Conread position:3-255
               
               
               Cow position:chr6:53346261-53346019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):169, 61

               
               
               Conread position:3-363
               
               
               Cow position:chr6:5844877-5845235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):150, 22

               
               
               Conread position:3-384
               
               
               Cow position:chr6:38771564-38771202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):261, 63

               
               
               Conread position:4-303
               
               
               Cow position:chr6:47783162-47782858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):27, 62

               
               
               Conread position:4-442
               
               
               Cow position:chr6:43345146-43345582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 61

               
               
               Conread position:5-385
               
               
               Cow position:chr6:64432225-64431853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:259
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):222, 26

               
               
               Conread position:7-384
               
               
               Cow position:chr6:2607896-2607532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):144, 21

               
               
               Conread position:8-378
               
               
               Cow position:chr6:12338283-12337909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:244
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):28, 121

               
               
               Conread position:8-378
               
               
               Cow position:chr6:67282184-67281819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:12-331
               
               
               Cow position:chr6:6201715-6201397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):115, 36

               
               
               Conread position:12-368
               
               
               Cow position:chr6:33207016-33206673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:237
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):14, 10

               
               
               Conread position:14-326
               
               
               Cow position:chr6:41014686-41015003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):14, 278

               
               
               Conread position:14-371
               
               
               Cow position:chr6:6724794-6724431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):154, 121

               
               
               Conread position:14-384
               
               
               Cow position:chr6:14949204-14949563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):46, 83

               
               
               Conread position:17-252
               
               
               Cow position:chr6:19810222-19809983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):71, 36

               
               
               Conread position:20-369
               
               
               Cow position:chr6:67643406-67643760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 123

               
               
               Conread position:22-289
               
               
               Cow position:chr6:21476003-21475736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):9, 29

               
               
               Conread position:24-378
               
               
               Cow position:chr6:17816716-17817060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):43, 27

               
               
               Conread position:25-352
               
               
               Cow position:chr6:62929771-62929443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):129, 39

               
               
               Conread position:25-378
               
               
               Cow position:chr6:60784144-60783795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):112, 39

               
               
               Conread position:25-384
               
               
               Cow position:chr6:120513-120159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 68

               
               
               Conread position:26-224
               
               
               Cow position:chr6:59687540-59687737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):128, 16

               
               
               Conread position:26-283
               
               
               Cow position:chr6:21715322-21715064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:26-348
               
               
               Cow position:chr6:53145405-53145731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 165

               
               
               Conread position:26-378
               
               
               Cow position:chr6:20157608-20157253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:237
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):15, 39

               
               
               Conread position:26-411
               
               
               Cow position:chr6:22332121-22332503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 169

               
               
               Conread position:27-266
               
               
               Cow position:chr6:22876661-22876898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):109, 21

               
               
               Conread position:27-268
               
               
               Cow position:chr6:23938324-23938092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:184
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):9, 96

               
               
               Conread position:27-273
               
               
               Cow position:chr6:14056195-14056444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 69

               
               
               Conread position:27-285
               
               
               Cow position:chr6:30501851-30502110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):33, 153

               
               
               Conread position:27-384
               
               
               Cow position:chr6:1769923-1770279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):113, 38

               
               
               Conread position:28-246
               
               
               Cow position:chr6:4323593-4323383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:28-364
               
               
               Cow position:chr6:23353827-23353489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):137, 97

               
               
               Conread position:28-383
               
               
               Cow position:chr6:40032450-40032110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:28-384
               
               
               Cow position:chr6:9219535-9219189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):32, 115

               
               
               Conread position:29-252
               
               
               Cow position:chr6:56061932-56061708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):115, 24

               
               
               Conread position:29-299
               
               
               Cow position:chr6:6168956-6168690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):178, 28

               
               
               Conread position:29-320
               
               
               Cow position:chr6:50863212-50862920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):153, 19

               
               
               Conread position:29-369
               
               
               Cow position:chr6:51541280-51540938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):108, 21

               
               
               Conread position:29-383
               
               
               Cow position:chr6:17557648-17557298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:236
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):7, 101

               
               
               Conread position:29-383
               
               
               Cow position:chr6:38610244-38609885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):12, 36

               
               
               Conread position:29-384
               
               
               Cow position:chr6:7539838-7539489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):164, 19

               
               
               Conread position:29-384
               
               
               Cow position:chr6:50747268-50746900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):151, 8

               
               
               Conread position:29-384
               
               
               Cow position:chr6:53178895-53178554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):133, 24

               
               
               Conread position:30-241
               
               
               Cow position:chr6:14263621-14263832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):114, 43

               
               
               Conread position:30-317
               
               
               Cow position:chr6:64428928-64429214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):116, 20

               
               
               Conread position:30-384
               
               
               Cow position:chr6:54854517-54854165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):119, 20

               
               
               Conread position:31-252
               
               
               Cow position:chr6:27636582-27636362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):104, 52

               
               
               Conread position:31-275
               
               
               Cow position:chr6:8366081-8365835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):100, 33

               
               
               Conread position:31-297
               
               
               Cow position:chr6:29775891-29775624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):10, 154

               
               
               Conread position:31-339
               
               
               Cow position:chr6:50269412-50269712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 123

               
               
               Conread position:31-346
               
               
               Cow position:chr6:93933-94236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):228, 22

               
               
               Conread position:31-364
               
               
               Cow position:chr6:17705101-17704758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):113, 34

               
               
               Conread position:31-368
               
               
               Cow position:chr6:32044118-32043784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):106, 129

               
               
               Conread position:31-379
               
               
               Cow position:chr6:2624037-2623703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:31-382
               
               
               Cow position:chr6:15937583-15937933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:242
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):34, 272

               
               
               Conread position:31-383
               
               
               Cow position:chr6:59719077-59718713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):100, 21

               
               
               Conread position:31-385
               
               
               Cow position:chr6:23401727-23402075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:244
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):233, 112

               
               
               Conread position:32-243
               
               
               Cow position:chr6:53811856-53811639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:32-251
               
               
               Cow position:chr6:63168492-63168715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 130

               
               
               Conread position:32-300
               
               
               Cow position:chr6:42035037-42034773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:201
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):21, 33

               
               
               Conread position:32-364
               
               
               Cow position:chr6:19754810-19755139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):35, 136

               
               
               Conread position:32-378
               
               
               Cow position:chr6:1370966-1371305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):81, 18

               
               
               Conread position:32-381
               
               
               Cow position:chr6:8562983-8562639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:233
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):25, 56

               
               
               Conread position:33-272
               
               
               Cow position:chr6:55548271-55548507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):229, 17

               
               
               Conread position:33-273
               
               
               Cow position:chr6:54846010-54846253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):104, 127

               
               
               Conread position:33-343
               
               
               Cow position:chr6:13367549-13367242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):10, 33

               
               
               Conread position:33-368
               
               
               Cow position:chr6:54490480-54490803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):231, 107

               
               
               Conread position:33-384
               
               
               Cow position:chr6:57571749-57571393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 124

               
               
               Conread position:33-394
               
               
               Cow position:chr6:52478150-52478509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 16

               
               
               Conread position:34-262
               
               
               Cow position:chr6:3937048-3936822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):110, 22

               
               
               Conread position:34-282
               
               
               Cow position:chr6:12623777-12623532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):6, 97

               
               
               Conread position:34-378
               
               
               Cow position:chr6:21399492-21399828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):119, 16

               
               
               Conread position:34-384
               
               
               Cow position:chr6:44566691-44566332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 127

               
               
               Conread position:35-289
               
               
               Cow position:chr6:55296829-55297086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):122, 29

               
               
               Conread position:35-378
               
               
               Cow position:chr6:48187308-48187657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):14, 45

               
               
               Conread position:35-384
               
               
               Cow position:chr6:8637531-8637193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:253
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):18, 30

               
               
               Conread position:35-384
               
               
               Cow position:chr6:31535306-31535651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 113

               
               
               Conread position:36-260
               
               
               Cow position:chr6:66979129-66978909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:37-367
               
               
               Cow position:chr6:37395141-37395475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):37, 28

               
               
               Conread position:37-384
               
               
               Cow position:chr6:8966348-8966009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):247, 20

               
               
               Conread position:37-384
               
               
               Cow position:chr6:24031628-24031295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):11, 112

               
               
               Conread position:37-384
               
               
               Cow position:chr6:54035880-54036219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):51, 16

               
               
               Conread position:37-384
               
               
               Cow position:chr6:55209820-55209472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):110, 16

               
               
               Conread position:38-230
               
               
               Cow position:chr6:16411873-16411680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):111, 26

               
               
               Conread position:38-325
               
               
               Cow position:chr6:62056873-62056587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):23, 100

               
               
               Conread position:38-337
               
               
               Cow position:chr6:67728637-67728333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):108, 15

               
               
               Conread position:38-368
               
               
               Cow position:chr6:18447255-18447578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):106, 15

               
               
               Conread position:38-377
               
               
               Cow position:chr6:22985600-22985935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:38-378
               
               
               Cow position:chr6:4691703-4692057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 154

               
               
               Conread position:38-384
               
               
               Cow position:chr6:6063032-6063375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):111, 26

               
               
               Conread position:39-346
               
               
               Cow position:chr6:3351289-3350973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:39-384
               
               
               Cow position:chr6:16266988-16266635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):96, 25

               
               
               Conread position:39-384
               
               
               Cow position:chr6:35989977-35990317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):29, 90

               
               
               Conread position:39-384
               
               
               Cow position:chr6:60859040-60859386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):130, 14

               
               
               Conread position:40-364
               
               
               Cow position:chr6:8161426-8161756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):116, 149

               
               
               Conread position:40-384
               
               
               Cow position:chr6:29485342-29485006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 105

               
               
               Conread position:40-384
               
               
               Cow position:chr6:44078773-44078434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):104, 17

               
               
               Conread position:41-230
               
               
               Cow position:chr6:63182541-63182358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:41-238
               
               
               Cow position:chr6:68246573-68246772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):116, 153

               
               
               Conread position:41-255
               
               
               Cow position:chr6:8468916-8468710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:41-270
               
               
               Cow position:chr6:66259994-66259758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):58, 23

               
               
               Conread position:41-308
               
               
               Cow position:chr6:52658211-52657939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):106, 32

               
               
               Conread position:41-366
               
               
               Cow position:chr6:32126308-32125998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):113, 14

               
               
               Conread position:41-375
               
               
               Cow position:chr6:55545913-55546252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):16, 136

               
               
               Conread position:41-383
               
               
               Cow position:chr6:4383732-4383403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:41-384
               
               
               Cow position:chr6:28155915-28156231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:41-386
               
               
               Cow position:chr6:46173001-46173338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):108, 12

               
               
               Conread position:42-384
               
               
               Cow position:chr6:13565347-13565000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):29, 48

               
               
               Conread position:42-387
               
               
               Cow position:chr6:56850276-56849925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):15, 107

               
               
               Conread position:43-332
               
               
               Cow position:chr6:3330253-3329955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 145

               
               
               Conread position:43-384
               
               
               Cow position:chr6:54431092-54430739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 155

               
               
               Conread position:43-384
               
               
               Cow position:chr6:61114020-61113670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):111, 21

               
               
               Conread position:44-252
               
               
               Cow position:chr6:62724812-62724603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:46-241
               
               
               Cow position:chr6:49686071-49685877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):98, 7

               
               
               Conread position:46-374
               
               
               Cow position:chr6:17068404-17068723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 11

               
               
               Conread position:46-384
               
               
               Cow position:chr6:37463257-37462938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):218, 10

               
               
               Conread position:47-230
               
               
               Cow position:chr6:36570720-36570529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:47-302
               
               
               Cow position:chr6:5820010-5820249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):224, 10

               
               
               Conread position:47-382
               
               
               Cow position:chr6:60273761-60274090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 16

               
               
               Conread position:47-383
               
               
               Cow position:chr6:32268635-32268959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):212, 185

               
               
               Conread position:47-384
               
               
               Cow position:chr6:48988685-48988353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:47-384
               
               
               Cow position:chr6:54207881-54208224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):81, 27

               
               
               Conread position:48-265
               
               
               Cow position:chr6:5601951-5601737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):60, 152

               
               
               Conread position:48-309
               
               
               Cow position:chr6:13653597-13653341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):36, 168

               
               
               Conread position:48-313
               
               
               Cow position:chr6:32453640-32453373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):50, 138

               
               
               Conread position:48-364
               
               
               Cow position:chr6:24536276-24536606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:48-383
               
               
               Cow position:chr6:65264302-65264622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):216, 5

               
               
               Conread position:48-384
               
               
               Cow position:chr6:16765148-16765481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):108, 9

               
               
               Conread position:48-384
               
               
               Cow position:chr6:24110534-24110200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:48-384
               
               
               Cow position:chr6:27888592-27888265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):216, 5

               
               
               Conread position:48-384
               
               
               Cow position:chr6:31564101-31564422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):216, 59

               
               
               Conread position:48-384
               
               
               Cow position:chr6:35181005-35181342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 5

               
               
               Conread position:48-384
               
               
               Cow position:chr6:48567110-48567428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):199, 16

               
               
               Conread position:48-384
               
               
               Cow position:chr6:55282041-55282371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:48-384
               
               
               Cow position:chr6:67187927-67187602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:221
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):109, 5

               
               
               Conread position:49-216
               
               
               Cow position:chr6:16137515-16137687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 132

               
               
               Conread position:49-220
               
               
               Cow position:chr6:7291561-7291395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:49-234
               
               
               Cow position:chr6:34463340-34463522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):27, 94

               
               
               Conread position:49-249
               
               
               Cow position:chr6:53711651-53711453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:49-382
               
               
               Cow position:chr6:13687567-13687895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 25

               
               
               Conread position:49-383
               
               
               Cow position:chr6:53460322-53460655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 24

               
               
               Conread position:49-384
               
               
               Cow position:chr6:21456424-21456772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):12, 76

               
               
               Conread position:49-384
               
               
               Cow position:chr6:46466067-46465739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 21

               
               
               Conread position:50-204
               
               
               Cow position:chr6:63233764-63233611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):97, 13

               
               
               Conread position:50-213
               
               
               Cow position:chr6:43770653-43770810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:50-243
               
               
               Cow position:chr6:54889851-54889656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):86, 15

               
               
               Conread position:50-247
               
               
               Cow position:chr6:55405166-55404964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):11, 139

               
               
               Conread position:50-249
               
               
               Cow position:chr6:45159806-45160007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:50-260
               
               
               Cow position:chr6:41657514-41657307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:50-268
               
               
               Cow position:chr6:16091146-16090934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):214, 78

               
               
               Conread position:50-281
               
               
               Cow position:chr6:60850948-60850719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):214, 95

               
               
               Conread position:50-297
               
               
               Cow position:chr6:54831727-54831478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):101, 136

               
               
               Conread position:50-300
               
               
               Cow position:chr6:58459966-58459720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):214, 65

               
               
               Conread position:50-317
               
               
               Cow position:chr6:35318884-35319153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):107, 126

               
               
               Conread position:50-318
               
               
               Cow position:chr6:35728098-35727823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):99, 45

               
               
               Conread position:50-321
               
               
               Cow position:chr6:26155395-26155130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):11, 23

               
               
               Conread position:50-326
               
               
               Cow position:chr6:47779129-47778847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):17, 120

               
               
               Conread position:50-328
               
               
               Cow position:chr6:56716058-56715791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 71

               
               
               Conread position:50-343
               
               
               Cow position:chr6:8125582-8125282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 131

               
               
               Conread position:50-344
               
               
               Cow position:chr6:7130612-7130934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:50-344
               
               
               Cow position:chr6:68376066-68376369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):75, 134

               
               
               Conread position:50-345
               
               
               Cow position:chr6:2078567-2078865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 78

               
               
               Conread position:50-345
               
               
               Cow position:chr6:55417285-55417572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):212, 15

               
               
               Conread position:50-367
               
               
               Cow position:chr6:7189880-7190186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:50-373
               
               
               Cow position:chr6:24339538-24339211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):51, 118

               
               
               Conread position:50-377
               
               
               Cow position:chr6:6060325-6060640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):94, 41

               
               
               Conread position:50-378
               
               
               Cow position:chr6:33302646-33302333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 191

               
               
               Conread position:50-378
               
               
               Cow position:chr6:33510040-33509712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):7, 145

               
               
               Conread position:50-382
               
               
               Cow position:chr6:1429882-1429557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):214, 15

               
               
               Conread position:50-382
               
               
               Cow position:chr6:7119381-7119692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):214, 91

               
               
               Conread position:50-383
               
               
               Cow position:chr6:11192229-11192549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 126

               
               
               Conread position:50-383
               
               
               Cow position:chr6:17313988-17313651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):10, 142

               
               
               Conread position:50-383
               
               
               Cow position:chr6:19045878-19045541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):20, 140

               
               
               Conread position:50-383
               
               
               Cow position:chr6:25614841-25615187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:50-383
               
               
               Cow position:chr6:26728295-26728608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):298, 42

               
               
               Conread position:50-384
               
               
               Cow position:chr6:10225401-10225723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):94, 187

               
               
               Conread position:50-384
               
               
               Cow position:chr6:15300591-15300903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):214, 77

               
               
               Conread position:50-384
               
               
               Cow position:chr6:15446944-15447287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:50-384
               
               
               Cow position:chr6:19264251-19264580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 37

               
               
               Conread position:50-384
               
               
               Cow position:chr6:36196453-36196130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):5, 46

               
               
               Conread position:50-384
               
               
               Cow position:chr6:50090896-50090561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):10, 130

               
               
               Conread position:50-384
               
               
               Cow position:chr6:51581005-51581337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 122

               
               
               Conread position:50-384
               
               
               Cow position:chr6:54365080-54365415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):94, 132

               
               
               Conread position:50-384
               
               
               Cow position:chr6:58370996-58370669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):209, 77

               
               
               Conread position:50-384
               
               
               Cow position:chr6:59602967-59603291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 23

               
               
               Conread position:51-257
               
               
               Cow position:chr6:24514284-24514503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:51-376
               
               
               Cow position:chr6:39358095-39358421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):192, 94

               
               
               Conread position:51-383
               
               
               Cow position:chr6:143130-143451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:235
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):213, 84

               
               
               Conread position:51-383
               
               
               Cow position:chr6:35436235-35435912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):212, 71

               
               
               Conread position:51-383
               
               
               Cow position:chr6:38640479-38640148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 30

               
               
               Conread position:51-384
               
               
               Cow position:chr6:6965144-6965475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):10, 41

               
               
               Conread position:51-384
               
               
               Cow position:chr6:10399661-10399985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):89, 13

               
               
               Conread position:51-384
               
               
               Cow position:chr6:53024564-53024879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):211, 6

               
               
               Conread position:52-221
               
               
               Cow position:chr6:66058462-66058629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:52-238
               
               
               Cow position:chr6:14383923-14383737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):90, 127

               
               
               Conread position:52-245
               
               
               Cow position:chr6:58697383-58697577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):76, 12

               
               
               Conread position:52-247
               
               
               Cow position:chr6:53765646-53765838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):95, 126

               
               
               Conread position:52-319
               
               
               Cow position:chr6:42567742-42567472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 12

               
               
               Conread position:52-373
               
               
               Cow position:chr6:14913987-14914314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 56

               
               
               Conread position:52-383
               
               
               Cow position:chr6:57404889-57405206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):212, 93

               
               
               Conread position:52-384
               
               
               Cow position:chr6:13040699-13040373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):92, 12

               
               
               Conread position:52-384
               
               
               Cow position:chr6:60850134-60850470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):98, 12

               
               
               Conread position:52-385
               
               
               Cow position:chr6:17414204-17414533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 13

               
               
               Conread position:52-397
               
               
               Cow position:chr6:36203068-36202733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 169

               
               
               Conread position:53-199
               
               
               Cow position:chr6:59759415-59759271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:53-214
               
               
               Cow position:chr6:1945202-1945041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):58, 13

               
               
               Conread position:53-229
               
               
               Cow position:chr6:35743227-35743049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 39

               
               
               Conread position:53-235
               
               
               Cow position:chr6:37994451-37994273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):13, 75

               
               
               Conread position:53-237
               
               
               Cow position:chr6:58173588-58173412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:53-241
               
               
               Cow position:chr6:18776492-18776309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:53-244
               
               
               Cow position:chr6:50883432-50883620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):8, 18

               
               
               Conread position:53-252
               
               
               Cow position:chr6:23058460-23058259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 99

               
               
               Conread position:53-277
               
               
               Cow position:chr6:21183978-21184199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):84, 11

               
               
               Conread position:53-289
               
               
               Cow position:chr6:54127575-54127803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):211, 87

               
               
               Conread position:53-290
               
               
               Cow position:chr6:42483661-42483423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):93, 110

               
               
               Conread position:53-319
               
               
               Cow position:chr6:53546275-53546016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):214, 73

               
               
               Conread position:53-345
               
               
               Cow position:chr6:51538826-51539128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):109, 25

               
               
               Conread position:53-348
               
               
               Cow position:chr6:12965100-12964805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:53-355
               
               
               Cow position:chr6:6194856-6195166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):96, 135

               
               
               Conread position:53-374
               
               
               Cow position:chr6:68272849-68272507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):113, 135

               
               
               Conread position:53-383
               
               
               Cow position:chr6:61169008-61168692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):60, 23

               
               
               Conread position:53-384
               
               
               Cow position:chr6:15305817-15305497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 122

               
               
               Conread position:53-384
               
               
               Cow position:chr6:17090826-17090515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):230, 20

               
               
               Conread position:53-384
               
               
               Cow position:chr6:19293044-19292714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):211, 112

               
               
               Conread position:53-384
               
               
               Cow position:chr6:32122142-32121827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 100

               
               
               Conread position:53-384
               
               
               Cow position:chr6:35726338-35726011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):7, 91

               
               
               Conread position:53-384
               
               
               Cow position:chr6:46282746-46283084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):74, 292

               
               
               Conread position:53-384
               
               
               Cow position:chr6:50577762-50577440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 39

               
               
               Conread position:53-384
               
               
               Cow position:chr6:59620902-59620585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):98, 123

               
               
               Conread position:53-385
               
               
               Cow position:chr6:27239758-27240092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):93, 85

               
               
               Conread position:54-261
               
               
               Cow position:chr6:410976-411175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:54-269
               
               
               Cow position:chr6:41226602-41226799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:54-274
               
               
               Cow position:chr6:12761525-12761304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):93, 41

               
               
               Conread position:54-325
               
               
               Cow position:chr6:68685785-68685529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):210, 73

               
               
               Conread position:54-378
               
               
               Cow position:chr6:60057393-60057731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 237

               
               
               Conread position:54-383
               
               
               Cow position:chr6:51526735-51526408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):102, 11

               
               
               Conread position:54-384
               
               
               Cow position:chr6:17548723-17549065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:54-394
               
               
               Cow position:chr6:38441425-38441080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):74, 196

               
               
               Conread position:54-397
               
               
               Cow position:chr6:67574635-67574311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):95, 123

               
               
               Conread position:55-238
               
               
               Cow position:chr6:48278651-48278831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):163, 36

               
               
               Conread position:55-338
               
               
               Cow position:chr6:66570669-66570399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):209, 36

               
               
               Conread position:55-384
               
               
               Cow position:chr6:15243083-15242752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 239

               
               
               Conread position:55-384
               
               
               Cow position:chr6:15243505-15243172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 38

               
               
               Conread position:55-387
               
               
               Cow position:chr6:16287823-16288140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):209, 40

               
               
               Conread position:56-241
               
               
               Cow position:chr6:57467842-57467655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:56-271
               
               
               Cow position:chr6:51933782-51933582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):208, 58

               
               
               Conread position:56-282
               
               
               Cow position:chr6:21470189-21470412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):208, 83

               
               
               Conread position:56-368
               
               
               Cow position:chr6:18117806-18118120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 98

               
               
               Conread position:56-378
               
               
               Cow position:chr6:8600248-8599927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):91, 38

               
               
               Conread position:56-383
               
               
               Cow position:chr6:47520297-47519967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 0

               
               
               Conread position:56-384
               
               
               Cow position:chr6:10039969-10039637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):91, 121

               
               
               Conread position:56-384
               
               
               Cow position:chr6:10105740-10106075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 35

               
               
               Conread position:56-384
               
               
               Cow position:chr6:11247011-11246679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):98, 119

               
               
               Conread position:56-384
               
               
               Cow position:chr6:63093671-63094010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):101, 67

               
               
               Conread position:57-236
               
               
               Cow position:chr6:35341945-35342118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):79, 35

               
               
               Conread position:57-238
               
               
               Cow position:chr6:26408260-26408443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:57-241
               
               
               Cow position:chr6:36939116-36938926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:57-282
               
               
               Cow position:chr6:30024119-30023902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):207, 34

               
               
               Conread position:57-282
               
               
               Cow position:chr6:47246024-47245798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):109, 125

               
               
               Conread position:57-310
               
               
               Cow position:chr6:21535282-21535028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):79, 97

               
               
               Conread position:57-321
               
               
               Cow position:chr6:21293256-21293518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:199
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):186, 83

               
               
               Conread position:57-325
               
               
               Cow position:chr6:48097361-48097627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):140, 34

               
               
               Conread position:57-326
               
               
               Cow position:chr6:63066079-63065798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:57-329
               
               
               Cow position:chr6:67451422-67451675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:57-332
               
               
               Cow position:chr6:60265926-60266214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):71, 224

               
               
               Conread position:57-339
               
               
               Cow position:chr6:611786-611511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 71

               
               
               Conread position:57-343
               
               
               Cow position:chr6:67451130-67451415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):70, 23

               
               
               Conread position:57-352
               
               
               Cow position:chr6:60468473-60468185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):135, 28

               
               
               Conread position:57-378
               
               
               Cow position:chr6:21061649-21061967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):207, 70

               
               
               Conread position:57-378
               
               
               Cow position:chr6:36470336-36470644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):206, 38

               
               
               Conread position:57-382
               
               
               Cow position:chr6:29210719-29210415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):180, 64

               
               
               Conread position:57-382
               
               
               Cow position:chr6:49421554-49421865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):97, 37

               
               
               Conread position:57-384
               
               
               Cow position:chr6:2547503-2547162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 100

               
               
               Conread position:57-384
               
               
               Cow position:chr6:23696236-23695910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):210, 35

               
               
               Conread position:57-384
               
               
               Cow position:chr6:24468157-24468477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):311, 84

               
               
               Conread position:57-384
               
               
               Cow position:chr6:32287873-32287554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 71

               
               
               Conread position:57-384
               
               
               Cow position:chr6:37149424-37149103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):207, 23

               
               
               Conread position:57-384
               
               
               Cow position:chr6:37332353-37332023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 35

               
               
               Conread position:57-384
               
               
               Cow position:chr6:65871273-65870944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 64

               
               
               Conread position:58-238
               
               
               Cow position:chr6:34423219-34423397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:58-238
               
               
               Cow position:chr6:44543906-44544087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 101

               
               
               Conread position:58-257
               
               
               Cow position:chr6:25772978-25773173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):81, 71

               
               
               Conread position:58-297
               
               
               Cow position:chr6:1866972-1866735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:58-355
               
               
               Cow position:chr6:51529949-51530241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):68, 34

               
               
               Conread position:58-368
               
               
               Cow position:chr6:3596035-3595723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:58-378
               
               
               Cow position:chr6:4469007-4468690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:58-378
               
               
               Cow position:chr6:61514957-61515269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 59

               
               
               Conread position:58-384
               
               
               Cow position:chr6:48282236-48281912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):111, 86

               
               
               Conread position:58-384
               
               
               Cow position:chr6:55186327-55186656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):116, 98

               
               
               Conread position:58-384
               
               
               Cow position:chr6:63720434-63720111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 65

               
               
               Conread position:58-394
               
               
               Cow position:chr6:57545988-57546316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):85, 33

               
               
               Conread position:58-401
               
               
               Cow position:chr6:47356067-47355725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):57, 144

               
               
               Conread position:59-224
               
               
               Cow position:chr6:62805885-62805718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):85, 119

               
               
               Conread position:59-238
               
               
               Cow position:chr6:55919692-55919873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):97, 130

               
               
               Conread position:59-238
               
               
               Cow position:chr6:63020582-63020404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):88, 107

               
               
               Conread position:59-241
               
               
               Cow position:chr6:28561928-28562110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):90, 110

               
               
               Conread position:59-247
               
               
               Cow position:chr6:33960408-33960597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):97, 112

               
               
               Conread position:59-255
               
               
               Cow position:chr6:6614865-6614665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:59-258
               
               
               Cow position:chr6:36225350-36225150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):84, 127

               
               
               Conread position:59-283
               
               
               Cow position:chr6:58304652-58304430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):95, 36

               
               
               Conread position:59-324
               
               
               Cow position:chr6:47540600-47540871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):88, 128

               
               
               Conread position:59-345
               
               
               Cow position:chr6:28972793-28973080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):78, 98

               
               
               Conread position:59-384
               
               
               Cow position:chr6:22850012-22850329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):97, 119

               
               
               Conread position:59-384
               
               
               Cow position:chr6:30122927-30123276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):88, 128

               
               
               Conread position:59-384
               
               
               Cow position:chr6:47575131-47574821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 62

               
               
               Conread position:59-384
               
               
               Cow position:chr6:50467378-50467051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):123, 265

               
               
               Conread position:59-384
               
               
               Cow position:chr6:59798889-59798573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):80, 33

               
               
               Conread position:59-384
               
               
               Cow position:chr6:65702169-65702484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):107, 200

               
               
               Conread position:59-403
               
               
               Cow position:chr6:43134701-43135037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:228
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):75, 24

               
               
               Conread position:60-217
               
               
               Cow position:chr6:21346914-21347068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:60-225
               
               
               Cow position:chr6:5445907-5445742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):89, 122

               
               
               Conread position:60-234
               
               
               Cow position:chr6:19936329-19936504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):86, 126

               
               
               Conread position:60-244
               
               
               Cow position:chr6:32006217-32006399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:60-245
               
               
               Cow position:chr6:66329464-66329648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):96, 34

               
               
               Conread position:60-250
               
               
               Cow position:chr6:35984895-35985087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):86, 111

               
               
               Conread position:60-250
               
               
               Cow position:chr6:60186412-60186613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:60-304
               
               
               Cow position:chr6:57320359-57320588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):205, 80

               
               
               Conread position:60-324
               
               
               Cow position:chr6:50504695-50504429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 69

               
               
               Conread position:60-325
               
               
               Cow position:chr6:1941595-1941863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):151, 85

               
               
               Conread position:60-332
               
               
               Cow position:chr6:45690380-45690635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):204, 14

               
               
               Conread position:60-344
               
               
               Cow position:chr6:62437656-62437370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):89, 231

               
               
               Conread position:60-348
               
               
               Cow position:chr6:7128165-7128455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:206
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):204, 77

               
               
               Conread position:60-351
               
               
               Cow position:chr6:7628208-7627911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):67, 133

               
               
               Conread position:60-352
               
               
               Cow position:chr6:60143960-60144251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 96

               
               
               Conread position:60-365
               
               
               Cow position:chr6:32866982-32867276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:223
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):170, 54

               
               
               Conread position:60-368
               
               
               Cow position:chr6:21004919-21004606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):86, 258

               
               
               Conread position:60-371
               
               
               Cow position:chr6:581501-581815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):89, 189

               
               
               Conread position:60-376
               
               
               Cow position:chr6:693906-694223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 86

               
               
               Conread position:60-378
               
               
               Cow position:chr6:46558293-46557976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):202, 85

               
               
               Conread position:60-383
               
               
               Cow position:chr6:45388560-45388247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):84, 50

               
               
               Conread position:60-383
               
               
               Cow position:chr6:46859932-46860247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 13

               
               
               Conread position:60-384
               
               
               Cow position:chr6:323063-323386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):98, 134

               
               
               Conread position:60-384
               
               
               Cow position:chr6:18080277-18080592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):122, 106

               
               
               Conread position:60-384
               
               
               Cow position:chr6:44194317-44194626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 31

               
               
               Conread position:60-384
               
               
               Cow position:chr6:53841264-53841583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 246

               
               
               Conread position:60-384
               
               
               Cow position:chr6:63251682-63252007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 120

               
               
               Conread position:60-385
               
               
               Cow position:chr6:9736406-9736730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):56, 129

               
               
               Conread position:60-427
               
               
               Cow position:chr6:18954853-18955192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):147, 32

               
               
               Conread position:61-219
               
               
               Cow position:chr6:54406567-54406719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:61-262
               
               
               Cow position:chr6:36537125-36537323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:61-272
               
               
               Cow position:chr6:50771123-50771332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):63, 22

               
               
               Conread position:61-274
               
               
               Cow position:chr6:57079664-57079448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):85, 125

               
               
               Conread position:61-316
               
               
               Cow position:chr6:58725605-58725359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:195
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):201, 83

               
               
               Conread position:61-352
               
               
               Cow position:chr6:18608572-18608867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):85, 121

               
               
               Conread position:61-378
               
               
               Cow position:chr6:34475320-34475629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):72, 110

               
               
               Conread position:61-384
               
               
               Cow position:chr6:3952759-3952435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):86, 129

               
               
               Conread position:61-384
               
               
               Cow position:chr6:4559065-4559389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):48, 116

               
               
               Conread position:61-384
               
               
               Cow position:chr6:5609204-5609524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 189

               
               
               Conread position:62-236
               
               
               Cow position:chr6:38033095-38032920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:62-249
               
               
               Cow position:chr6:36163983-36163794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 116

               
               
               Conread position:62-261
               
               
               Cow position:chr6:34721874-34722067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 68

               
               
               Conread position:62-262
               
               
               Cow position:chr6:21083304-21083503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:62-273
               
               
               Cow position:chr6:61110019-61109813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):202, 79

               
               
               Conread position:62-291
               
               
               Cow position:chr6:56799654-56799891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):86, 115

               
               
               Conread position:62-302
               
               
               Cow position:chr6:67069578-67069818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):135, 29

               
               
               Conread position:62-343
               
               
               Cow position:chr6:23532883-23532614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):200, 33

               
               
               Conread position:62-368
               
               
               Cow position:chr6:9302486-9302784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):202, 63

               
               
               Conread position:62-378
               
               
               Cow position:chr6:5330651-5330336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):84, 111

               
               
               Conread position:62-384
               
               
               Cow position:chr6:21231749-21231447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):202, 85

               
               
               Conread position:62-384
               
               
               Cow position:chr6:29240169-29239855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):102, 64

               
               
               Conread position:62-384
               
               
               Cow position:chr6:67951194-67950869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):77, 27

               
               
               Conread position:63-324
               
               
               Cow position:chr6:57089440-57089172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:63-329
               
               
               Cow position:chr6:49437567-49437303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):76, 28

               
               
               Conread position:63-382
               
               
               Cow position:chr6:19996851-19996536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):57, 90

               
               
               Conread position:63-384
               
               
               Cow position:chr6:19402081-19401772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):98, 64

               
               
               Conread position:64-240
               
               
               Cow position:chr6:51120831-51121009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 104

               
               
               Conread position:64-255
               
               
               Cow position:chr6:21350796-21350988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):67, 139

               
               
               Conread position:64-294
               
               
               Cow position:chr6:4699940-4699713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):172, 81

               
               
               Conread position:64-301
               
               
               Cow position:chr6:58227630-58227370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:64-378
               
               
               Cow position:chr6:24781316-24781634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):63, 128

               
               
               Conread position:64-378
               
               
               Cow position:chr6:66131554-66131228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):80, 185

               
               
               Conread position:64-383
               
               
               Cow position:chr6:38207250-38207574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:64-384
               
               
               Cow position:chr6:48803405-48803720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):49, 74

               
               
               Conread position:65-226
               
               
               Cow position:chr6:2014359-2014202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:65-384
               
               
               Cow position:chr6:34195928-34196234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):125, 56

               
               
               Conread position:65-384
               
               
               Cow position:chr6:49398395-49398698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:65-394
               
               
               Cow position:chr6:5302168-5302511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):66, 175

               
               
               Conread position:68-377
               
               
               Cow position:chr6:60118373-60118073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):196, 61

               
               
               Conread position:68-384
               
               
               Cow position:chr6:19446484-19446175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):64, 56

               
               
               Conread position:68-384
               
               
               Cow position:chr6:67617716-67618039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 48

               
               
               Conread position:69-302
               
               
               Cow position:chr6:48379381-48379616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):80, 194

               
               
               Conread position:69-367
               
               
               Cow position:chr6:58732070-58732373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):121, 168

               
               
               Conread position:71-220
               
               
               Cow position:chr6:2758010-2757864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:71-282
               
               
               Cow position:chr6:61681306-61681094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):100, 117

               
               
               Conread position:71-341
               
               
               Cow position:chr6:60517066-60516786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):58, 159

               
               
               Conread position:71-384
               
               
               Cow position:chr6:16262009-16261699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):117, 185

               
               
               Conread position:72-225
               
               
               Cow position:chr6:8726904-8726752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:72-248
               
               
               Cow position:chr6:48793007-48792829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 106

               
               
               Conread position:72-344
               
               
               Cow position:chr6:31806698-31806978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):67, 88

               
               
               Conread position:72-377
               
               
               Cow position:chr6:41375997-41375693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:208
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):92, 72

               
               
               Conread position:72-381
               
               
               Cow position:chr6:22525552-22525250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:72-383
               
               
               Cow position:chr6:41733862-41733542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):64, 115

               
               
               Conread position:72-384
               
               
               Cow position:chr6:17794528-17794840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):35, 220

               
               
               Conread position:72-384
               
               
               Cow position:chr6:35539270-35539590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):86, 188

               
               
               Conread position:72-384
               
               
               Cow position:chr6:38853429-38853738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 108

               
               
               Conread position:72-384
               
               
               Cow position:chr6:54133038-54132733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 43

               
               
               Conread position:72-384
               
               
               Cow position:chr6:62670098-62669787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):57, 218

               
               
               Conread position:73-252
               
               
               Cow position:chr6:40682442-40682615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:73-347
               
               
               Cow position:chr6:2585167-2584894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):119, 92

               
               
               Conread position:73-348
               
               
               Cow position:chr6:68816396-68816118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):71, 11

               
               
               Conread position:73-384
               
               
               Cow position:chr6:5113821-5114129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):66, 143

               
               
               Conread position:74-253
               
               
               Cow position:chr6:24905847-24905674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:74-379
               
               
               Cow position:chr6:47305567-47305261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):72, 96

               
               
               Conread position:74-379
               
               
               Cow position:chr6:51835623-51835319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):90, 55

               
               
               Conread position:74-382
               
               
               Cow position:chr6:12091761-12092075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):52, 89

               
               
               Conread position:74-382
               
               
               Cow position:chr6:46292130-46292426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):117, 55

               
               
               Conread position:76-332
               
               
               Cow position:chr6:34119140-34119387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):110, 42

               
               
               Conread position:76-366
               
               
               Cow position:chr6:19696032-19695741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):71, 159

               
               
               Conread position:79-298
               
               
               Cow position:chr6:1870977-1871195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):71, 49

               
               
               Conread position:79-367
               
               
               Cow position:chr6:9718697-9718987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):203, 63

               
               
               Conread position:79-384
               
               
               Cow position:chr6:28483237-28482935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):137, 207

               
               
               Conread position:79-384
               
               
               Cow position:chr6:60740230-60739931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 43

               
               
               Conread position:80-368
               
               
               Cow position:chr6:52413081-52412793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):74, 106

               
               
               Conread position:80-377
               
               
               Cow position:chr6:35842879-35842578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):59, 109

               
               
               Conread position:82-213
               
               
               Cow position:chr6:53235436-53235566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:82-384
               
               
               Cow position:chr6:21736685-21736970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):182, 44

               
               
               Conread position:83-328
               
               
               Cow position:chr6:36920759-36921003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):57, 66

               
               
               Conread position:83-384
               
               
               Cow position:chr6:38641710-38641410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:217
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):74, 135

               
               
               Conread position:86-225
               
               
               Cow position:chr6:47698816-47698679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:86-384
               
               
               Cow position:chr6:26915541-26915246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 61

               
               
               Conread position:89-410
               
               
               Cow position:chr6:27851498-27851817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):151, 62

               
               
               Conread position:90-383
               
               
               Cow position:chr6:40774125-40774435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):22, 52

               
               
               Conread position:90-384
               
               
               Cow position:chr6:50984434-50984141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):57, 100

               
               
               Conread position:94-384
               
               
               Cow position:chr6:20097753-20098048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:95-380
               
               
               Cow position:chr6:61524000-61524281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 229

               
               
               Conread position:95-384
               
               
               Cow position:chr6:61269515-61269226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 51

               
               
               Conread position:97-348
               
               
               Cow position:chr6:31078666-31078920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):149, 72

               
               
               Conread position:98-377
               
               
               Cow position:chr6:2153395-2153668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 91

               
               
               Conread position:98-378
               
               
               Cow position:chr6:21514405-21514691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):46, 18

               
               
               Conread position:98-384
               
               
               Cow position:chr6:6067503-6067776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):74, 43

               
               
               Conread position:98-384
               
               
               Cow position:chr6:36189901-36189613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):23, 136

               
               
               Conread position:99-378
               
               
               Cow position:chr6:17333850-17334131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):55, 77

               
               
               Conread position:113-384
               
               
               Cow position:chr6:48112382-48112115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 38

               
               
               Conread position:128-257
               
               
               Cow position:chr6:28900496-28900369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:128-352
               
               
               Cow position:chr6:32809451-32809224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):107, 18

               
               
               Conread position:128-368
               
               
               Cow position:chr6:37199368-37199598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):138, 24

               
               
               Conread position:128-383
               
               
               Cow position:chr6:6343601-6343343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):84, 23

               
               
               Conread position:128-384
               
               
               Cow position:chr6:6401120-6400867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 18

               
               
               Conread position:128-384
               
               
               Cow position:chr6:21235213-21234960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):105, 24

               
               
               Conread position:128-384
               
               
               Cow position:chr6:21869477-21869732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):136, 153

               
               
               Conread position:128-384
               
               
               Cow position:chr6:24004709-24004459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):14, 158

               
               
               Conread position:128-384
               
               
               Cow position:chr6:47799465-47799207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:129-331
               
               
               Cow position:chr6:19131599-19131398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:129-367
               
               
               Cow position:chr6:36284414-36284175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):20, 51

               
               
               Conread position:130-311
               
               
               Cow position:chr6:51463464-51463647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):134, 57

               
               
               Conread position:130-348
               
               
               Cow position:chr6:68652179-68652401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:130-384
               
               
               Cow position:chr6:582103-582355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):34, 45

               
               
               Conread position:131-268
               
               
               Cow position:chr6:54349862-54349726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:131-332
               
               
               Cow position:chr6:222287-222482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):133, 23

               
               
               Conread position:131-368
               
               
               Cow position:chr6:35993752-35993518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):133, 43

               
               
               Conread position:131-379
               
               
               Cow position:chr6:23465866-23466108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-384
               
               
               Cow position:chr6:8209437-8209675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:131-384
               
               
               Cow position:chr6:16423873-16423616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):14, 73

               
               
               Conread position:131-384
               
               
               Cow position:chr6:46571275-46571033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):25, 146

               
               
               Conread position:131-384
               
               
               Cow position:chr6:54867686-54867429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):133, 152

               
               
               Conread position:131-384
               
               
               Cow position:chr6:54990832-54991087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):132, 155

               
               
               Conread position:131-385
               
               
               Cow position:chr6:18048859-18049109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):133, 25

               
               
               Conread position:131-442
               
               
               Cow position:chr6:35103161-35103477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:132-282
               
               
               Cow position:chr6:1002097-1002246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):132, 21

               
               
               Conread position:132-355
               
               
               Cow position:chr6:18144365-18144138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):108, 157

               
               
               Conread position:132-382
               
               
               Cow position:chr6:528117-528355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):132, 19

               
               
               Conread position:132-404
               
               
               Cow position:chr6:51675074-51674813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):133, 19

               
               
               Conread position:133-345
               
               
               Cow position:chr6:1422651-1422440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):130, 13

               
               
               Conread position:133-366
               
               
               Cow position:chr6:61142396-61142630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):117, 28

               
               
               Conread position:133-385
               
               
               Cow position:chr6:66531655-66531907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):131, 85

               
               
               Conread position:134-380
               
               
               Cow position:chr6:51969242-51968987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):130, 103

               
               
               Conread position:134-384
               
               
               Cow position:chr6:59069456-59069708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):65, 12

               
               
               Conread position:135-382
               
               
               Cow position:chr6:47339191-47339434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):129, 181

               
               
               Conread position:135-383
               
               
               Cow position:chr6:53652203-53651960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:136-322
               
               
               Cow position:chr6:53090172-53089985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):130, 25

               
               
               Conread position:137-332
               
               
               Cow position:chr6:19259179-19259377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:139-281
               
               
               Cow position:chr6:18422831-18422972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 8

               
               
               Conread position:139-384
               
               
               Cow position:chr6:50976209-50975974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):126, 149

               
               
               Conread position:143-375
               
               
               Cow position:chr6:59770379-59770156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):121, 8

               
               
               Conread position:143-378
               
               
               Cow position:chr6:58608287-58608517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):23, 44

               
               
               Conread position:146-378
               
               
               Cow position:chr6:42565841-42565611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):119, 28

               
               
               Conread position:146-378
               
               
               Cow position:chr6:63047746-63047501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:146-384
               
               
               Cow position:chr6:58597351-58597588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):14, 180

               
               
               Conread position:146-385
               
               
               Cow position:chr6:38218820-38218586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):27, 37

               
               
               Conread position:147-343
               
               
               Cow position:chr6:19681372-19681571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:147-343
               
               
               Cow position:chr6:28976887-28977087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:159
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:147-344
               
               
               Cow position:chr6:58590426-58590225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):119, 152

               
               
               Conread position:147-383
               
               
               Cow position:chr6:66874501-66874267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):117, 9

               
               
               Conread position:147-384
               
               
               Cow position:chr6:4864394-4864632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):117, 139

               
               
               Conread position:147-384
               
               
               Cow position:chr6:9008459-9008695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):117, 150

               
               
               Conread position:147-384
               
               
               Cow position:chr6:36652574-36652335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):117, 27

               
               
               Conread position:147-414
               
               
               Cow position:chr6:66375180-66375442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:197
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):117, 135

               
               
               Conread position:148-339
               
               
               Cow position:chr6:32516958-32517139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:148-383
               
               
               Cow position:chr6:17245466-17245690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):90, 30

               
               
               Conread position:148-388
               
               
               Cow position:chr6:9452617-9452857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):47, 186

               
               
               Conread position:149-273
               
               
               Cow position:chr6:57328244-57328366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:149-384
               
               
               Cow position:chr6:1886516-1886748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):115, 86

               
               
               Conread position:151-384
               
               
               Cow position:chr6:1499789-1499556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):113, 31

               
               
               Conread position:151-394
               
               
               Cow position:chr6:31526195-31525950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):132, 103

               
               
               Conread position:152-282
               
               
               Cow position:chr6:43651900-43651769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:152-383
               
               
               Cow position:chr6:47640285-47640516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:178
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):112, 9

               
               
               Conread position:152-384
               
               
               Cow position:chr6:20929366-20929600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):119, 35

               
               
               Conread position:152-384
               
               
               Cow position:chr6:28999792-29000009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:152-384
               
               
               Cow position:chr6:37634943-37634700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 13

               
               
               Conread position:153-345
               
               
               Cow position:chr6:32853334-32853141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):111, 74

               
               
               Conread position:153-384
               
               
               Cow position:chr6:12551417-12551186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):13, 80

               
               
               Conread position:153-384
               
               
               Cow position:chr6:14958193-14958429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:153-384
               
               
               Cow position:chr6:60350145-60350379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:155-368
               
               
               Cow position:chr6:33929402-33929618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:155-378
               
               
               Cow position:chr6:60667555-60667342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):110, 37

               
               
               Conread position:155-384
               
               
               Cow position:chr6:52901383-52901150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:156-345
               
               
               Cow position:chr6:35613273-35613469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):60, 137

               
               
               Conread position:157-384
               
               
               Cow position:chr6:45064874-45065098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):108, 128

               
               
               Conread position:160-368
               
               
               Cow position:chr6:38614952-38614748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):104, 62

               
               
               Conread position:161-368
               
               
               Cow position:chr6:12845514-12845317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):151, 43

               
               
               Conread position:161-383
               
               
               Cow position:chr6:8787898-8788121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):102, 152

               
               
               Conread position:161-384
               
               
               Cow position:chr6:56843293-56843072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):104, 60

               
               
               Conread position:164-382
               
               
               Cow position:chr6:49002604-49002816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):211, 67

               
               
               Conread position:169-384
               
               
               Cow position:chr6:23247836-23248043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):93, 5

               
               
               Conread position:174-384
               
               
               Cow position:chr6:61608638-61608427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:179-383
               
               
               Cow position:chr6:57164550-57164343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:179-384
               
               
               Cow position:chr6:899172-899374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):86, 114

               
               
               Conread position:179-384
               
               
               Cow position:chr6:31635563-31635773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):29, 48

               
               
               Conread position:179-384
               
               
               Cow position:chr6:60673686-60673485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):89, 57

               
               
               Conread position:182-381
               
               
               Cow position:chr6:28318515-28318323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):65, 44

               
               
               Conread position:185-384
               
               
               Cow position:chr6:12542815-12543017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:185-384
               
               
               Cow position:chr6:30974157-30973968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 33

               
               
               Conread position:187-338
               
               
               Cow position:chr6:12197293-12197139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:187-367
               
               
               Cow position:chr6:15022434-15022615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):84, 98

               
               
               Conread position:187-383
               
               
               Cow position:chr6:130050-130244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):80, 56

               
               
               Conread position:190-378
               
               
               Cow position:chr6:20206385-20206199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 94

               
               
               Conread position:190-384
               
               
               Cow position:chr6:25008829-25008626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:191-378
               
               
               Cow position:chr6:54936688-54936502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 94

               
               
               Conread position:194-378
               
               
               Cow position:chr6:31261100-31260927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):57, 67

               
               
               Conread position:194-394
               
               
               Cow position:chr6:54600454-54600253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):70, 191

               
               
               Conread position:195-383
               
               
               Cow position:chr6:52248025-52248214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):15, 105

               
               
               Conread position:198-367
               
               
               Cow position:chr6:7170246-7170414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):32, 83

               
               
               Conread position:202-365
               
               
               Cow position:chr6:67615332-67615496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):62, 91

               
               
               Conread position:202-373
               
               
               Cow position:chr6:36493443-36493622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 15

               
               
               Conread position:204-366
               
               
               Cow position:chr6:1944809-1944645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):60, 38

               
               
               Conread position:207-384
               
               
               Cow position:chr6:24962238-24962065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):37, 83

               
               
               Conread position:209-384
               
               
               Cow position:chr6:12829134-12829308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 107

               
               
               Conread position:213-384
               
               
               Cow position:chr6:37376427-37376601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:222-384
               
               
               Cow position:chr6:18961438-18961600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):42, 5

               
               
               Conread position:223-384
               
               
               Cow position:chr6:21542400-21542236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:237-382
               
               
               Cow position:chr6:6460605-6460461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 52

               
               
               Conread position:243-378
               
               
               Cow position:chr6:53731581-53731444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-252
               
               
               Cow position:chr7:10945649-10945397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):153, 64

               
               
               Conread position:1-379
               
               
               Cow position:chr7:29682149-29682524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:263
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:1-384
               
               
               Cow position:chr7:40009130-40008736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:268
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):19, 92

               
               
               Conread position:2-234
               
               
               Cow position:chr7:53862806-53862580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 21

               
               
               Conread position:3-383
               
               
               Cow position:chr7:34214894-34214514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:6-378
               
               
               Cow position:chr7:35286351-35286713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):101, 109

               
               
               Conread position:6-384
               
               
               Cow position:chr7:62603476-62603101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):92, 51

               
               
               Conread position:7-255
               
               
               Cow position:chr7:54090782-54090539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 138

               
               
               Conread position:7-363
               
               
               Cow position:chr7:41614687-41615049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):170, 20

               
               
               Conread position:7-378
               
               
               Cow position:chr7:39823323-39823672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:249
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):13, 18

               
               
               Conread position:7-404
               
               
               Cow position:chr7:9449375-9449751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:267
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:8-274
               
               
               Cow position:chr7:59149807-59149537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 87

               
               
               Conread position:8-378
               
               
               Cow position:chr7:10075317-10074941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):97, 22

               
               
               Conread position:8-384
               
               
               Cow position:chr7:58301646-58302021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 132

               
               
               Conread position:9-224
               
               
               Cow position:chr7:68898297-68898079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 59

               
               
               Conread position:9-384
               
               
               Cow position:chr7:16022582-16022216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:258
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):31, 15

               
               
               Conread position:11-341
               
               
               Cow position:chr7:58330545-58330868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):138, 16

               
               
               Conread position:12-339
               
               
               Cow position:chr7:35642290-35642620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 14

               
               
               Conread position:17-299
               
               
               Cow position:chr7:9077524-9077807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 272

               
               
               Conread position:17-387
               
               
               Cow position:chr7:10599410-10599761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):193, 36

               
               
               Conread position:18-384
               
               
               Cow position:chr7:18187945-18188303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:253
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):54, 73

               
               
               Conread position:19-384
               
               
               Cow position:chr7:10943268-10943631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:277
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):8, 25

               
               
               Conread position:20-282
               
               
               Cow position:chr7:38136085-38135832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):7, 12

               
               
               Conread position:20-384
               
               
               Cow position:chr7:27079909-27079545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 105

               
               
               Conread position:21-366
               
               
               Cow position:chr7:39170198-39169844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):27, 44

               
               
               Conread position:22-364
               
               
               Cow position:chr7:39131227-39131552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):242, 31

               
               
               Conread position:23-225
               
               
               Cow position:chr7:18016951-18016751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 122

               
               
               Conread position:23-241
               
               
               Cow position:chr7:56880355-56880135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):131, 153

               
               
               Conread position:23-378
               
               
               Cow position:chr7:69133237-69132877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 218

               
               
               Conread position:23-384
               
               
               Cow position:chr7:23663818-23664175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):41, 154

               
               
               Conread position:25-246
               
               
               Cow position:chr7:26309389-26309613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):39, 153

               
               
               Conread position:25-262
               
               
               Cow position:chr7:8025631-8025393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):109, 51

               
               
               Conread position:25-378
               
               
               Cow position:chr7:54513135-54513485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):239, 42

               
               
               Conread position:25-384
               
               
               Cow position:chr7:37698084-37697720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:26-328
               
               
               Cow position:chr7:50166303-50166001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):40, 10

               
               
               Conread position:26-383
               
               
               Cow position:chr7:5199284-5199631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 31

               
               
               Conread position:26-384
               
               
               Cow position:chr7:42894731-42894364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:26-384
               
               
               Cow position:chr7:55687908-55688280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 31

               
               
               Conread position:27-274
               
               
               Cow position:chr7:9816276-9816025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):33, 164

               
               
               Conread position:28-320
               
               
               Cow position:chr7:25393573-25393285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 136

               
               
               Conread position:28-384
               
               
               Cow position:chr7:40425034-40425398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:247
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):26, 150

               
               
               Conread position:28-384
               
               
               Cow position:chr7:53097861-53097506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):125, 20

               
               
               Conread position:29-238
               
               
               Cow position:chr7:28047844-28047634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):118, 44

               
               
               Conread position:29-245
               
               
               Cow position:chr7:9068325-9068543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):117, 24

               
               
               Conread position:29-275
               
               
               Cow position:chr7:30185519-30185762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:29-282
               
               
               Cow position:chr7:6469899-6469640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:29-352
               
               
               Cow position:chr7:36717198-36717512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):159, 45

               
               
               Conread position:29-384
               
               
               Cow position:chr7:3304849-3304487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:244
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):115, 24

               
               
               Conread position:30-230
               
               
               Cow position:chr7:20936357-20936554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):67, 19

               
               
               Conread position:30-378
               
               
               Cow position:chr7:13067425-13067089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:238
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):119, 22

               
               
               Conread position:30-384
               
               
               Cow position:chr7:48359263-48358924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):227, 23

               
               
               Conread position:30-438
               
               
               Cow position:chr7:68857314-68857719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):117, 164

               
               
               Conread position:31-142
               
               
               Cow position:chr7:1804453-1804566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:31-272
               
               
               Cow position:chr7:14029576-14029340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):212, 109

               
               
               Conread position:31-368
               
               
               Cow position:chr7:32774519-32774198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:31-378
               
               
               Cow position:chr7:63112509-63112849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):223, 22

               
               
               Conread position:31-382
               
               
               Cow position:chr7:32093530-32093170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 165

               
               
               Conread position:31-382
               
               
               Cow position:chr7:43711481-43711139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:243
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):233, 22

               
               
               Conread position:31-384
               
               
               Cow position:chr7:249234-249583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):29, 121

               
               
               Conread position:31-384
               
               
               Cow position:chr7:46823941-46823587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):105, 22

               
               
               Conread position:31-384
               
               
               Cow position:chr7:51063562-51063208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):105, 26

               
               
               Conread position:31-384
               
               
               Cow position:chr7:53551669-53552023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):142, 43

               
               
               Conread position:32-234
               
               
               Cow position:chr7:5914499-5914299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:32-339
               
               
               Cow position:chr7:46952300-46951995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:32-378
               
               
               Cow position:chr7:8878153-8877802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:237
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):137, 97

               
               
               Conread position:32-384
               
               
               Cow position:chr7:29510206-29509872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:251
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):29, 99

               
               
               Conread position:33-223
               
               
               Cow position:chr7:16574869-16574679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):116, 31

               
               
               Conread position:33-230
               
               
               Cow position:chr7:8888558-8888364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):123, 21

               
               
               Conread position:33-251
               
               
               Cow position:chr7:60121823-60121605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 73

               
               
               Conread position:33-279
               
               
               Cow position:chr7:4138497-4138734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):99, 20

               
               
               Conread position:33-378
               
               
               Cow position:chr7:1720695-1721041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):20, 161

               
               
               Conread position:33-378
               
               
               Cow position:chr7:9781454-9781800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):121, 31

               
               
               Conread position:33-381
               
               
               Cow position:chr7:4893115-4892787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:236
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):231, 24

               
               
               Conread position:33-383
               
               
               Cow position:chr7:40567324-40566991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):196, 94

               
               
               Conread position:33-384
               
               
               Cow position:chr7:5052300-5052640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:33-384
               
               
               Cow position:chr7:9137116-9136752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:257
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):94, 20

               
               
               Conread position:33-384
               
               
               Cow position:chr7:12226893-12227246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:33-384
               
               
               Cow position:chr7:36278566-36278214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 54

               
               
               Conread position:34-282
               
               
               Cow position:chr7:6043874-6044118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 18

               
               
               Conread position:34-366
               
               
               Cow position:chr7:23546877-23546544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 53

               
               
               Conread position:34-384
               
               
               Cow position:chr7:53763321-53763666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):16, 152

               
               
               Conread position:34-384
               
               
               Cow position:chr7:59692333-59691991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):19, 43

               
               
               Conread position:35-214
               
               
               Cow position:chr7:1763684-1763512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:35-384
               
               
               Cow position:chr7:47547669-47547324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 18

               
               
               Conread position:36-259
               
               
               Cow position:chr7:48376077-48375853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):21, 151

               
               
               Conread position:36-337
               
               
               Cow position:chr7:48667665-48667377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):185, 15

               
               
               Conread position:36-338
               
               
               Cow position:chr7:29505377-29505077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):228, 92

               
               
               Conread position:36-367
               
               
               Cow position:chr7:20918097-20918418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 92

               
               
               Conread position:37-246
               
               
               Cow position:chr7:9174025-9173814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 35

               
               
               Conread position:37-282
               
               
               Cow position:chr7:11796643-11796883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:182
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):227, 15

               
               
               Conread position:37-290
               
               
               Cow position:chr7:10414877-10415121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:194
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):227, 27

               
               
               Conread position:37-297
               
               
               Cow position:chr7:36284962-36284695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):171, 48

               
               
               Conread position:37-364
               
               
               Cow position:chr7:40484584-40484260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):117, 33

               
               
               Conread position:37-383
               
               
               Cow position:chr7:51020042-51019700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):98, 20

               
               
               Conread position:37-384
               
               
               Cow position:chr7:6706564-6706214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):117, 16

               
               
               Conread position:38-224
               
               
               Cow position:chr7:35793342-35793153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):22, 53

               
               
               Conread position:38-230
               
               
               Cow position:chr7:44942817-44942629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):128, 15

               
               
               Conread position:38-272
               
               
               Cow position:chr7:40304993-40305224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):226, 102

               
               
               Conread position:38-332
               
               
               Cow position:chr7:37497927-37498228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):101, 19

               
               
               Conread position:38-379
               
               
               Cow position:chr7:21239866-21240190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):116, 47

               
               
               Conread position:38-384
               
               
               Cow position:chr7:34428840-34428490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:244
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):115, 15

               
               
               Conread position:38-386
               
               
               Cow position:chr7:14482329-14481978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):103, 40

               
               
               Conread position:38-387
               
               
               Cow position:chr7:60732365-60732724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 193

               
               
               Conread position:39-259
               
               
               Cow position:chr7:61390118-61389898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:39-302
               
               
               Cow position:chr7:23557337-23557598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):130, 25

               
               
               Conread position:39-348
               
               
               Cow position:chr7:53785722-53786027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):11, 88

               
               
               Conread position:39-383
               
               
               Cow position:chr7:41293487-41293829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):225, 55

               
               
               Conread position:40-217
               
               
               Cow position:chr7:11019205-11019380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):17, 101

               
               
               Conread position:40-235
               
               
               Cow position:chr7:40520348-40520544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):106, 68

               
               
               Conread position:40-249
               
               
               Cow position:chr7:40310804-40311008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):99, 29

               
               
               Conread position:40-321
               
               
               Cow position:chr7:25464828-25464547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):96, 13

               
               
               Conread position:40-366
               
               
               Cow position:chr7:43940749-43940431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):114, 139

               
               
               Conread position:40-368
               
               
               Cow position:chr7:39158947-39158612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):97, 13

               
               
               Conread position:40-384
               
               
               Cow position:chr7:14174182-14174496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):77, 51

               
               
               Conread position:40-384
               
               
               Cow position:chr7:30276998-30276655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 24

               
               
               Conread position:42-351
               
               
               Cow position:chr7:44209215-44208902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):22, 144

               
               
               Conread position:43-238
               
               
               Cow position:chr7:50866903-50867101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 119

               
               
               Conread position:43-257
               
               
               Cow position:chr7:5906892-5906679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:43-384
               
               
               Cow position:chr7:43895092-43894746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):43, 10

               
               
               Conread position:44-235
               
               
               Cow position:chr7:9858609-9858422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):122, 94

               
               
               Conread position:44-255
               
               
               Cow position:chr7:52591743-52591951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):100, 167

               
               
               Conread position:44-373
               
               
               Cow position:chr7:18856732-18857052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):113, 20

               
               
               Conread position:44-384
               
               
               Cow position:chr7:34554503-34554183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):220, 51

               
               
               Conread position:45-220
               
               
               Cow position:chr7:67763891-67764063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:46-231
               
               
               Cow position:chr7:12329971-12330155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):92, 107

               
               
               Conread position:46-231
               
               
               Cow position:chr7:34216457-34216280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:46-344
               
               
               Cow position:chr7:11077507-11077208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):100, 18

               
               
               Conread position:46-383
               
               
               Cow position:chr7:50065861-50066193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 81

               
               
               Conread position:46-383
               
               
               Cow position:chr7:67873452-67873110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):18, 258

               
               
               Conread position:46-384
               
               
               Cow position:chr7:58967523-58967187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):98, 7

               
               
               Conread position:47-250
               
               
               Cow position:chr7:53782566-53782766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):17, 40

               
               
               Conread position:47-262
               
               
               Cow position:chr7:7510597-7510813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:47-273
               
               
               Cow position:chr7:17806918-17807146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):106, 17

               
               
               Conread position:47-384
               
               
               Cow position:chr7:32284177-32283835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:47-384
               
               
               Cow position:chr7:39939991-39939656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):105, 17

               
               
               Conread position:47-399
               
               
               Cow position:chr7:64228636-64228991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):107, 17

               
               
               Conread position:48-231
               
               
               Cow position:chr7:12484555-12484370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:48-262
               
               
               Cow position:chr7:11784791-11785004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):13, 105

               
               
               Conread position:48-332
               
               
               Cow position:chr7:25786093-25785807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):79, 16

               
               
               Conread position:48-342
               
               
               Cow position:chr7:42335571-42335293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):208, 5

               
               
               Conread position:48-349
               
               
               Cow position:chr7:51644894-51644601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):138, 38

               
               
               Conread position:48-352
               
               
               Cow position:chr7:8821723-8821422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):117, 16

               
               
               Conread position:48-368
               
               
               Cow position:chr7:15616442-15616111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):140, 16

               
               
               Conread position:48-378
               
               
               Cow position:chr7:39538479-39538148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:211
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):80, 16

               
               
               Conread position:48-378
               
               
               Cow position:chr7:44454013-44454355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 146

               
               
               Conread position:48-382
               
               
               Cow position:chr7:57829481-57829147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):78, 16

               
               
               Conread position:48-384
               
               
               Cow position:chr7:21165989-21166329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:48-384
               
               
               Cow position:chr7:40321730-40321404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):213, 16

               
               
               Conread position:49-231
               
               
               Cow position:chr7:16285324-16285506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):97, 15

               
               
               Conread position:49-249
               
               
               Cow position:chr7:17000981-17000779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:49-249
               
               
               Cow position:chr7:48508701-48508499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):128, 95

               
               
               Conread position:49-253
               
               
               Cow position:chr7:5992544-5992338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 139

               
               
               Conread position:49-255
               
               
               Cow position:chr7:30012081-30011878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):184, 96

               
               
               Conread position:49-272
               
               
               Cow position:chr7:60121278-60121055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):76, 49

               
               
               Conread position:49-282
               
               
               Cow position:chr7:15548282-15548052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):215, 92

               
               
               Conread position:49-355
               
               
               Cow position:chr7:11444243-11443940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):11, 47

               
               
               Conread position:49-363
               
               
               Cow position:chr7:33720287-33719973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 46

               
               
               Conread position:49-378
               
               
               Cow position:chr7:68172904-68173228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):11, 204

               
               
               Conread position:49-383
               
               
               Cow position:chr7:39164647-39164301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 121

               
               
               Conread position:49-384
               
               
               Cow position:chr7:10399-10063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 97

               
               
               Conread position:49-384
               
               
               Cow position:chr7:36570117-36569768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):19, 282

               
               
               Conread position:49-384
               
               
               Cow position:chr7:39444370-39444682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):215, 43

               
               
               Conread position:49-384
               
               
               Cow position:chr7:40406895-40406577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:50-225
               
               
               Cow position:chr7:39988984-39988811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:50-229
               
               
               Cow position:chr7:65695057-65695234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:50-235
               
               
               Cow position:chr7:11511970-11511791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:50-241
               
               
               Cow position:chr7:8523531-8523719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):114, 14

               
               
               Conread position:50-241
               
               
               Cow position:chr7:46191709-46191898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:50-248
               
               
               Cow position:chr7:25087495-25087301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 73

               
               
               Conread position:50-249
               
               
               Cow position:chr7:35096769-35096972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):10, 139

               
               
               Conread position:50-252
               
               
               Cow position:chr7:4868708-4868513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 68

               
               
               Conread position:50-254
               
               
               Cow position:chr7:24022221-24022415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):16, 52

               
               
               Conread position:50-271
               
               
               Cow position:chr7:17752555-17752773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):210, 14

               
               
               Conread position:50-274
               
               
               Cow position:chr7:23678179-23677953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:50-282
               
               
               Cow position:chr7:57242974-57243213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 63

               
               
               Conread position:50-297
               
               
               Cow position:chr7:11897713-11897470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):135, 76

               
               
               Conread position:50-301
               
               
               Cow position:chr7:26909512-26909759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):214, 93

               
               
               Conread position:50-330
               
               
               Cow position:chr7:9070704-9070433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):132, 91

               
               
               Conread position:50-331
               
               
               Cow position:chr7:39167717-39167432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 109

               
               
               Conread position:50-341
               
               
               Cow position:chr7:12494870-12495148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 102

               
               
               Conread position:50-343
               
               
               Cow position:chr7:32692775-32693068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):13, 99

               
               
               Conread position:50-346
               
               
               Cow position:chr7:57593676-57593384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):214, 41

               
               
               Conread position:50-363
               
               
               Cow position:chr7:168407-168729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:50-366
               
               
               Cow position:chr7:63121163-63121482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:50-378
               
               
               Cow position:chr7:14519791-14520116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):121, 91

               
               
               Conread position:50-378
               
               
               Cow position:chr7:52776511-52776829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):143, 33

               
               
               Conread position:50-379
               
               
               Cow position:chr7:19466004-19466327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):20, 80

               
               
               Conread position:50-382
               
               
               Cow position:chr7:20537607-20537283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):16, 72

               
               
               Conread position:50-383
               
               
               Cow position:chr7:13963461-13963123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):135, 81

               
               
               Conread position:50-383
               
               
               Cow position:chr7:23205377-23205712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 41

               
               
               Conread position:50-383
               
               
               Cow position:chr7:37455575-37455239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):76, 14

               
               
               Conread position:50-383
               
               
               Cow position:chr7:48020676-48020340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 92

               
               
               Conread position:50-384
               
               
               Cow position:chr7:11066722-11066393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:238
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):214, 48

               
               
               Conread position:50-384
               
               
               Cow position:chr7:11958191-11958512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:241
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):14, 36

               
               
               Conread position:50-384
               
               
               Cow position:chr7:14524723-14524398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):10, 40

               
               
               Conread position:50-384
               
               
               Cow position:chr7:18544139-18544457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:243
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):215, 91

               
               
               Conread position:50-384
               
               
               Cow position:chr7:20051215-20051546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:227
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):10, 28

               
               
               Conread position:50-384
               
               
               Cow position:chr7:20968677-20968353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:50-384
               
               
               Cow position:chr7:22793586-22793267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 77

               
               
               Conread position:50-384
               
               
               Cow position:chr7:30155695-30156036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):14, 83

               
               
               Conread position:50-384
               
               
               Cow position:chr7:32259945-32260283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 92

               
               
               Conread position:50-384
               
               
               Cow position:chr7:33393558-33393233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 7

               
               
               Conread position:50-384
               
               
               Cow position:chr7:46856717-46857041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 41

               
               
               Conread position:50-384
               
               
               Cow position:chr7:48715118-48714770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:50-384
               
               
               Cow position:chr7:50860248-50859931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:50-384
               
               
               Cow position:chr7:60483181-60483508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 44

               
               
               Conread position:50-384
               
               
               Cow position:chr7:63946347-63946664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:238
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):214, 56

               
               
               Conread position:50-386
               
               
               Cow position:chr7:36248344-36248016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:50-402
               
               
               Cow position:chr7:31694380-31694735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:242
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):86, 243

               
               
               Conread position:51-255
               
               
               Cow position:chr7:19652188-19652390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):155, 70

               
               
               Conread position:51-295
               
               
               Cow position:chr7:26871741-26871985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 13

               
               
               Conread position:51-326
               
               
               Cow position:chr7:59438701-59438425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):156, 13

               
               
               Conread position:51-368
               
               
               Cow position:chr7:60547420-60547733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):104, 6

               
               
               Conread position:51-384
               
               
               Cow position:chr7:2578985-2579324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):9, 108

               
               
               Conread position:51-384
               
               
               Cow position:chr7:4582478-4582810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):15, 78

               
               
               Conread position:51-384
               
               
               Cow position:chr7:15533833-15534154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):187, 41

               
               
               Conread position:51-384
               
               
               Cow position:chr7:18508295-18508612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):240, 62

               
               
               Conread position:51-384
               
               
               Cow position:chr7:49751379-49751045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 164

               
               
               Conread position:51-384
               
               
               Cow position:chr7:58170973-58170659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):213, 13

               
               
               Conread position:52-243
               
               
               Cow position:chr7:23256001-23255815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:52-246
               
               
               Cow position:chr7:53271257-53271067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):181, 88

               
               
               Conread position:52-247
               
               
               Cow position:chr7:10438576-10438383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:52-255
               
               
               Cow position:chr7:67099585-67099379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 125

               
               
               Conread position:52-257
               
               
               Cow position:chr7:11054803-11054596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:52-270
               
               
               Cow position:chr7:58682970-58683182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:52-312
               
               
               Cow position:chr7:32884403-32884152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):213, 20

               
               
               Conread position:52-343
               
               
               Cow position:chr7:19797677-19797975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):94, 119

               
               
               Conread position:52-378
               
               
               Cow position:chr7:66894291-66894614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):92, 69

               
               
               Conread position:52-383
               
               
               Cow position:chr7:35300172-35300500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 53

               
               
               Conread position:52-384
               
               
               Cow position:chr7:24220911-24220588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):37, 86

               
               
               Conread position:52-384
               
               
               Cow position:chr7:32893990-32894328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 256

               
               
               Conread position:52-384
               
               
               Cow position:chr7:36534276-36533950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):11, 125

               
               
               Conread position:52-384
               
               
               Cow position:chr7:53806560-53806899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):75, 203

               
               
               Conread position:53-227
               
               
               Cow position:chr7:28584524-28584350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 65

               
               
               Conread position:53-241
               
               
               Cow position:chr7:8292894-8293091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):75, 41

               
               
               Conread position:53-254
               
               
               Cow position:chr7:12918333-12918529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):12, 92

               
               
               Conread position:53-255
               
               
               Cow position:chr7:38347598-38347801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):91, 129

               
               
               Conread position:53-257
               
               
               Cow position:chr7:14535167-14534968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:53-266
               
               
               Cow position:chr7:40414754-40414961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:53-272
               
               
               Cow position:chr7:58800418-58800198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):91, 123

               
               
               Conread position:53-301
               
               
               Cow position:chr7:63300446-63300200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):93, 11

               
               
               Conread position:53-318
               
               
               Cow position:chr7:23491873-23491612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):206, 74

               
               
               Conread position:53-325
               
               
               Cow position:chr7:3431115-3431388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):93, 125

               
               
               Conread position:53-328
               
               
               Cow position:chr7:61699458-61699722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):16, 76

               
               
               Conread position:53-332
               
               
               Cow position:chr7:64268743-64269027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):91, 123

               
               
               Conread position:53-339
               
               
               Cow position:chr7:40275929-40276232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):13, 164

               
               
               Conread position:53-347
               
               
               Cow position:chr7:62395258-62394964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:53-355
               
               
               Cow position:chr7:3160046-3159763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 39

               
               
               Conread position:53-360
               
               
               Cow position:chr7:53653520-53653817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):20, 76

               
               
               Conread position:53-368
               
               
               Cow position:chr7:63378645-63378327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 12

               
               
               Conread position:53-371
               
               
               Cow position:chr7:27063023-27062708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):96, 42

               
               
               Conread position:53-378
               
               
               Cow position:chr7:535472-535780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):206, 88

               
               
               Conread position:53-378
               
               
               Cow position:chr7:4129539-4129857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 87

               
               
               Conread position:53-378
               
               
               Cow position:chr7:54054845-54054513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):72, 192

               
               
               Conread position:53-381
               
               
               Cow position:chr7:39093675-39094004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):129, 222

               
               
               Conread position:53-383
               
               
               Cow position:chr7:8109995-8110331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):7, 141

               
               
               Conread position:53-383
               
               
               Cow position:chr7:31170711-31171032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 74

               
               
               Conread position:53-383
               
               
               Cow position:chr7:39150201-39149860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:53-384
               
               
               Cow position:chr7:4452852-4452522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 54

               
               
               Conread position:53-384
               
               
               Cow position:chr7:23679343-23679673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 74

               
               
               Conread position:53-384
               
               
               Cow position:chr7:44596458-44596781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:231
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):13, 77

               
               
               Conread position:53-384
               
               
               Cow position:chr7:60870175-60869866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):12, 75

               
               
               Conread position:54-241
               
               
               Cow position:chr7:19329062-19329247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:54-272
               
               
               Cow position:chr7:6116120-6116336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):210, 91

               
               
               Conread position:54-290
               
               
               Cow position:chr7:11960638-11960408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):132, 37

               
               
               Conread position:54-339
               
               
               Cow position:chr7:25135571-25135861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):19, 210

               
               
               Conread position:54-354
               
               
               Cow position:chr7:465892-466198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 156

               
               
               Conread position:54-380
               
               
               Cow position:chr7:30931736-30932053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 62

               
               
               Conread position:54-383
               
               
               Cow position:chr7:4765086-4764767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 88

               
               
               Conread position:54-384
               
               
               Cow position:chr7:31315548-31315231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):215, 73

               
               
               Conread position:54-384
               
               
               Cow position:chr7:54712663-54712337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 79

               
               
               Conread position:54-384
               
               
               Cow position:chr7:61790106-61790438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):211, 32

               
               
               Conread position:55-248
               
               
               Cow position:chr7:6802025-6801834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):91, 163

               
               
               Conread position:55-259
               
               
               Cow position:chr7:21573816-21573614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:55-297
               
               
               Cow position:chr7:31523793-31523552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 229

               
               
               Conread position:55-384
               
               
               Cow position:chr7:4719979-4720313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 169

               
               
               Conread position:55-384
               
               
               Cow position:chr7:25415643-25415317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):79, 110

               
               
               Conread position:56-230
               
               
               Cow position:chr7:15951649-15951819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:56-230
               
               
               Cow position:chr7:38357404-38357568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:56-254
               
               
               Cow position:chr7:23671998-23671800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-295
               
               
               Cow position:chr7:54108623-54108859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 128

               
               
               Conread position:56-297
               
               
               Cow position:chr7:35088905-35088661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:56-343
               
               
               Cow position:chr7:26263409-26263700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 35

               
               
               Conread position:56-383
               
               
               Cow position:chr7:23636955-23636627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):88, 30

               
               
               Conread position:56-384
               
               
               Cow position:chr7:41315180-41315516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:239
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):71, 179

               
               
               Conread position:57-214
               
               
               Cow position:chr7:2738981-2739143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 29

               
               
               Conread position:57-238
               
               
               Cow position:chr7:42460911-42460730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:57-265
               
               
               Cow position:chr7:6821294-6821082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:57-301
               
               
               Cow position:chr7:12488668-12488432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):116, 70

               
               
               Conread position:57-302
               
               
               Cow position:chr7:56556909-56557147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):186, 70

               
               
               Conread position:57-326
               
               
               Cow position:chr7:23464507-23464237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):69, 102

               
               
               Conread position:57-348
               
               
               Cow position:chr7:54013622-54013323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):70, 120

               
               
               Conread position:57-354
               
               
               Cow position:chr7:38429473-38429763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 84

               
               
               Conread position:57-361
               
               
               Cow position:chr7:41111633-41111942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):109, 119

               
               
               Conread position:57-368
               
               
               Cow position:chr7:28563154-28563445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):205, 23

               
               
               Conread position:57-369
               
               
               Cow position:chr7:428544-428849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):135, 13

               
               
               Conread position:57-378
               
               
               Cow position:chr7:1761975-1761650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):34, 83

               
               
               Conread position:57-378
               
               
               Cow position:chr7:14536044-14536356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:238
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):114, 64

               
               
               Conread position:57-378
               
               
               Cow position:chr7:23762211-23761891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):210, 46

               
               
               Conread position:57-383
               
               
               Cow position:chr7:40263428-40263728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):206, 65

               
               
               Conread position:57-383
               
               
               Cow position:chr7:49105958-49106282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 89

               
               
               Conread position:57-384
               
               
               Cow position:chr7:17713218-17713554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 60

               
               
               Conread position:57-384
               
               
               Cow position:chr7:20535116-20534794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 94

               
               
               Conread position:57-384
               
               
               Cow position:chr7:23251340-23251644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):207, 69

               
               
               Conread position:57-384
               
               
               Cow position:chr7:34433035-34433361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):92, 120

               
               
               Conread position:57-384
               
               
               Cow position:chr7:35274842-35275162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 66

               
               
               Conread position:57-384
               
               
               Cow position:chr7:36996602-36996293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):208, 95

               
               
               Conread position:57-384
               
               
               Cow position:chr7:37394543-37394235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):207, 181

               
               
               Conread position:57-384
               
               
               Cow position:chr7:47698262-47697934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):87, 174

               
               
               Conread position:57-384
               
               
               Cow position:chr7:48721661-48721984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):208, 108

               
               
               Conread position:57-384
               
               
               Cow position:chr7:50565950-50566281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):87, 234

               
               
               Conread position:57-384
               
               
               Cow position:chr7:53053161-53053483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 83

               
               
               Conread position:58-192
               
               
               Cow position:chr7:34098844-34098711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):106, 87

               
               
               Conread position:58-244
               
               
               Cow position:chr7:27290253-27290441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:58-254
               
               
               Cow position:chr7:23819135-23818941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):177, 33

               
               
               Conread position:58-283
               
               
               Cow position:chr7:43085120-43084894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):88, 120

               
               
               Conread position:58-331
               
               
               Cow position:chr7:11176492-11176745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:58-332
               
               
               Cow position:chr7:8089405-8089131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:205
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):150, 82

               
               
               Conread position:58-368
               
               
               Cow position:chr7:68315485-68315177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):110, 84

               
               
               Conread position:58-378
               
               
               Cow position:chr7:3026474-3026792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):85, 15

               
               
               Conread position:58-384
               
               
               Cow position:chr7:28917344-28917006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):55, 49

               
               
               Conread position:58-384
               
               
               Cow position:chr7:39145499-39145835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):93, 118

               
               
               Conread position:58-384
               
               
               Cow position:chr7:39416149-39415827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 64

               
               
               Conread position:58-384
               
               
               Cow position:chr7:43109294-43109614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):96, 120

               
               
               Conread position:58-384
               
               
               Cow position:chr7:61779096-61778763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):44, 56

               
               
               Conread position:59-220
               
               
               Cow position:chr7:20180959-20181116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:59-234
               
               
               Cow position:chr7:31885837-31885661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 127

               
               
               Conread position:59-238
               
               
               Cow position:chr7:14191503-14191682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):101, 35

               
               
               Conread position:59-247
               
               
               Cow position:chr7:53834346-53834536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):87, 124

               
               
               Conread position:59-249
               
               
               Cow position:chr7:56857794-56857993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:59-252
               
               
               Cow position:chr7:63772293-63772099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:59-267
               
               
               Cow position:chr7:8136144-8135935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):61, 127

               
               
               Conread position:59-275
               
               
               Cow position:chr7:68240700-68240490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):205, 32

               
               
               Conread position:59-280
               
               
               Cow position:chr7:60272759-60272543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):55, 68

               
               
               Conread position:59-289
               
               
               Cow position:chr7:26791755-26791519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 139

               
               
               Conread position:59-321
               
               
               Cow position:chr7:61740284-61740543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):106, 67

               
               
               Conread position:59-335
               
               
               Cow position:chr7:23624423-23624700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):85, 127

               
               
               Conread position:59-349
               
               
               Cow position:chr7:38360993-38361278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):87, 128

               
               
               Conread position:59-364
               
               
               Cow position:chr7:10885140-10884830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):61, 72

               
               
               Conread position:59-377
               
               
               Cow position:chr7:32791932-32791629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):67, 104

               
               
               Conread position:59-378
               
               
               Cow position:chr7:47931549-47931873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):37, 133

               
               
               Conread position:59-382
               
               
               Cow position:chr7:10368939-10369259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):112, 126

               
               
               Conread position:59-383
               
               
               Cow position:chr7:41871865-41872169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):70, 33

               
               
               Conread position:59-384
               
               
               Cow position:chr7:1376368-1376059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):133, 30

               
               
               Conread position:59-384
               
               
               Cow position:chr7:20219600-20219917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):107, 35

               
               
               Conread position:59-384
               
               
               Cow position:chr7:33698195-33697874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):207, 97

               
               
               Conread position:59-384
               
               
               Cow position:chr7:43908437-43908125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):206, 61

               
               
               Conread position:59-384
               
               
               Cow position:chr7:58867876-58867537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 117

               
               
               Conread position:59-411
               
               
               Cow position:chr7:33515135-33514778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):105, 126

               
               
               Conread position:60-238
               
               
               Cow position:chr7:51621632-51621460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):165, 59

               
               
               Conread position:60-244
               
               
               Cow position:chr7:18958299-18958482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):100, 85

               
               
               Conread position:60-247
               
               
               Cow position:chr7:40672267-40672078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):89, 127

               
               
               Conread position:60-248
               
               
               Cow position:chr7:23552724-23552910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:60-267
               
               
               Cow position:chr7:35779978-35779777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:60-274
               
               
               Cow position:chr7:18464254-18464457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):84, 120

               
               
               Conread position:60-296
               
               
               Cow position:chr7:18247596-18247824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):204, 23

               
               
               Conread position:60-309
               
               
               Cow position:chr7:38458626-38458367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):24, 171

               
               
               Conread position:60-319
               
               
               Cow position:chr7:39947006-39947263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):34, 89

               
               
               Conread position:60-330
               
               
               Cow position:chr7:17750600-17750865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):241, 202

               
               
               Conread position:60-332
               
               
               Cow position:chr7:29300536-29300800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):204, 10

               
               
               Conread position:60-332
               
               
               Cow position:chr7:33279745-33280023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):12, 206

               
               
               Conread position:60-345
               
               
               Cow position:chr7:146950-146670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):89, 32

               
               
               Conread position:60-371
               
               
               Cow position:chr7:47776105-47775803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):85, 227

               
               
               Conread position:60-378
               
               
               Cow position:chr7:11783184-11783506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):127, 42

               
               
               Conread position:60-378
               
               
               Cow position:chr7:23456583-23456899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 26

               
               
               Conread position:60-378
               
               
               Cow position:chr7:25195791-25195467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):81, 247

               
               
               Conread position:60-378
               
               
               Cow position:chr7:53579147-53579467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):60, 146

               
               
               Conread position:60-382
               
               
               Cow position:chr7:20168787-20168472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):117, 31

               
               
               Conread position:60-383
               
               
               Cow position:chr7:15559925-15559611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 81

               
               
               Conread position:60-383
               
               
               Cow position:chr7:36665568-36665251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:60-384
               
               
               Cow position:chr7:15570278-15569960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 83

               
               
               Conread position:60-384
               
               
               Cow position:chr7:21008681-21009020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):77, 271

               
               
               Conread position:60-384
               
               
               Cow position:chr7:29479762-29479444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 80

               
               
               Conread position:60-384
               
               
               Cow position:chr7:39428098-39427771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):87, 31

               
               
               Conread position:60-384
               
               
               Cow position:chr7:47513445-47513769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 32

               
               
               Conread position:60-384
               
               
               Cow position:chr7:62733431-62733102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):67, 32

               
               
               Conread position:60-386
               
               
               Cow position:chr7:51039673-51039345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):122, 26

               
               
               Conread position:60-406
               
               
               Cow position:chr7:51910353-51910033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):204, 12

               
               
               Conread position:61-301
               
               
               Cow position:chr7:50021226-50021457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):203, 30

               
               
               Conread position:61-376
               
               
               Cow position:chr7:30017282-30017590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):196, 68

               
               
               Conread position:61-383
               
               
               Cow position:chr7:25263610-25263295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):83, 56

               
               
               Conread position:61-384
               
               
               Cow position:chr7:49417846-49417522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):31, 70

               
               
               Conread position:61-384
               
               
               Cow position:chr7:57659922-57660247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):83, 10

               
               
               Conread position:61-384
               
               
               Cow position:chr7:63707079-63707386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):81, 30

               
               
               Conread position:61-384
               
               
               Cow position:chr7:63749242-63749556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 30

               
               
               Conread position:61-411
               
               
               Cow position:chr7:31504089-31503745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):88, 125

               
               
               Conread position:62-247
               
               
               Cow position:chr7:54367735-54367548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 125

               
               
               Conread position:62-273
               
               
               Cow position:chr7:62497814-62498021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):144, 53

               
               
               Conread position:62-348
               
               
               Cow position:chr7:33914208-33913923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):202, 83

               
               
               Conread position:62-378
               
               
               Cow position:chr7:18388155-18388474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):20, 117

               
               
               Conread position:62-384
               
               
               Cow position:chr7:32946305-32945992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 13

               
               
               Conread position:62-384
               
               
               Cow position:chr7:64135228-64135547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:62-397
               
               
               Cow position:chr7:11714203-11714520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):202, 83

               
               
               Conread position:63-244
               
               
               Cow position:chr7:49941894-49942074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):83, 20

               
               
               Conread position:63-262
               
               
               Cow position:chr7:39514473-39514273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:63-262
               
               
               Cow position:chr7:39516277-39516477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:63-321
               
               
               Cow position:chr7:41346791-41347052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):87, 225

               
               
               Conread position:63-383
               
               
               Cow position:chr7:37435484-37435164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):86, 120

               
               
               Conread position:64-220
               
               
               Cow position:chr7:10441732-10441886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:64-318
               
               
               Cow position:chr7:60161280-60161044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 59

               
               
               Conread position:64-343
               
               
               Cow position:chr7:33386153-33385881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):200, 18

               
               
               Conread position:64-384
               
               
               Cow position:chr7:8658751-8658432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 82

               
               
               Conread position:64-384
               
               
               Cow position:chr7:13594012-13593684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):63, 31

               
               
               Conread position:64-384
               
               
               Cow position:chr7:23568491-23568818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):39, 95

               
               
               Conread position:64-384
               
               
               Cow position:chr7:52681088-52680760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):53, 84

               
               
               Conread position:64-385
               
               
               Cow position:chr7:42593027-42593362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 234

               
               
               Conread position:65-318
               
               
               Cow position:chr7:31240928-31240672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):63, 95

               
               
               Conread position:65-348
               
               
               Cow position:chr7:18947523-18947791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):199, 59

               
               
               Conread position:65-384
               
               
               Cow position:chr7:46818264-46818575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 24

               
               
               Conread position:65-384
               
               
               Cow position:chr7:52382721-52383057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):69, 177

               
               
               Conread position:65-384
               
               
               Cow position:chr7:67817135-67816823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):75, 87

               
               
               Conread position:68-272
               
               
               Cow position:chr7:11015932-11015711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:68-272
               
               
               Cow position:chr7:34464587-34464388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:68-384
               
               
               Cow position:chr7:914281-913961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 101

               
               
               Conread position:68-384
               
               
               Cow position:chr7:58862643-58862969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):61, 114

               
               
               Conread position:69-330
               
               
               Cow position:chr7:6823210-6822945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):69, 108

               
               
               Conread position:69-352
               
               
               Cow position:chr7:29302122-29302399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):85, 107

               
               
               Conread position:69-378
               
               
               Cow position:chr7:37777585-37777894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):132, 78

               
               
               Conread position:69-384
               
               
               Cow position:chr7:15755212-15755531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):75, 22

               
               
               Conread position:71-266
               
               
               Cow position:chr7:15650613-15650811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):78, 117

               
               
               Conread position:71-384
               
               
               Cow position:chr7:17966896-17967199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):125, 20

               
               
               Conread position:71-384
               
               
               Cow position:chr7:37569282-37568954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):76, 105

               
               
               Conread position:72-234
               
               
               Cow position:chr7:8032671-8032511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):30, 38

               
               
               Conread position:72-234
               
               
               Cow position:chr7:32920370-32920533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):77, 104

               
               
               Conread position:72-325
               
               
               Cow position:chr7:53202944-53202687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):72, 118

               
               
               Conread position:72-345
               
               
               Cow position:chr7:14317168-14316897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):192, 67

               
               
               Conread position:72-350
               
               
               Cow position:chr7:39635107-39635378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):75, 95

               
               
               Conread position:72-355
               
               
               Cow position:chr7:7535764-7535481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):187, 70

               
               
               Conread position:72-379
               
               
               Cow position:chr7:40308288-40308592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):72, 215

               
               
               Conread position:72-384
               
               
               Cow position:chr7:3336332-3336633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):192, 73

               
               
               Conread position:72-385
               
               
               Cow position:chr7:31094103-31094432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):44, 130

               
               
               Conread position:72-411
               
               
               Cow position:chr7:20411294-20411637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):77, 20

               
               
               Conread position:73-283
               
               
               Cow position:chr7:9660497-9660295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):189, 21

               
               
               Conread position:73-367
               
               
               Cow position:chr7:43484305-43484603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):158, 19

               
               
               Conread position:73-383
               
               
               Cow position:chr7:53382409-53382120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):191, 54

               
               
               Conread position:73-384
               
               
               Cow position:chr7:56820360-56820653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:74-248
               
               
               Cow position:chr7:4060499-4060319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):68, 107

               
               
               Conread position:74-384
               
               
               Cow position:chr7:14006112-14005793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):63, 103

               
               
               Conread position:75-249
               
               
               Cow position:chr7:11884057-11884228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:78-332
               
               
               Cow position:chr7:44496345-44496601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):104, 209

               
               
               Conread position:78-384
               
               
               Cow position:chr7:26737117-26737417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):12, 81

               
               
               Conread position:78-384
               
               
               Cow position:chr7:46116411-46116731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 220

               
               
               Conread position:79-366
               
               
               Cow position:chr7:1269328-1269609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):58, 99

               
               
               Conread position:79-384
               
               
               Cow position:chr7:21565329-21565638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 152

               
               
               Conread position:79-384
               
               
               Cow position:chr7:59168473-59168190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):186, 31

               
               
               Conread position:80-225
               
               
               Cow position:chr7:23823277-23823422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:80-384
               
               
               Cow position:chr7:8777431-8777120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):64, 100

               
               
               Conread position:81-340
               
               
               Cow position:chr7:50494217-50493954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):75, 27

               
               
               Conread position:82-383
               
               
               Cow position:chr7:46051879-46051574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):64, 108

               
               
               Conread position:86-384
               
               
               Cow position:chr7:55085875-55085574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):63, 101

               
               
               Conread position:87-379
               
               
               Cow position:chr7:39904304-39904018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):177, 58

               
               
               Conread position:90-364
               
               
               Cow position:chr7:56615880-56615601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):59, 5

               
               
               Conread position:92-282
               
               
               Cow position:chr7:11487462-11487653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):37, 71

               
               
               Conread position:92-384
               
               
               Cow position:chr7:50772522-50772816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):72, 93

               
               
               Conread position:95-276
               
               
               Cow position:chr7:68595774-68595952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):27, 58

               
               
               Conread position:96-273
               
               
               Cow position:chr7:16563525-16563693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):165, 27

               
               
               Conread position:96-348
               
               
               Cow position:chr7:56886307-56886555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):84, 20

               
               
               Conread position:97-362
               
               
               Cow position:chr7:32222267-32221995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):163, 61

               
               
               Conread position:98-366
               
               
               Cow position:chr7:4812220-4811959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):42, 72

               
               
               Conread position:98-383
               
               
               Cow position:chr7:29279817-29280094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):164, 65

               
               
               Conread position:100-384
               
               
               Cow position:chr7:42637167-42636899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):17, 40

               
               
               Conread position:101-280
               
               
               Cow position:chr7:8090215-8090395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):43, 148

               
               
               Conread position:101-377
               
               
               Cow position:chr7:1558944-1558662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 90

               
               
               Conread position:107-366
               
               
               Cow position:chr7:45158324-45158063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 224

               
               
               Conread position:110-290
               
               
               Cow position:chr7:57066610-57066796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):17, 123

               
               
               Conread position:126-383
               
               
               Cow position:chr7:10381974-10381721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):140, 26

               
               
               Conread position:128-255
               
               
               Cow position:chr7:23170009-23169880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:128-324
               
               
               Cow position:chr7:598417-598220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):139, 16

               
               
               Conread position:128-355
               
               
               Cow position:chr7:37466685-37466456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):43, 18

               
               
               Conread position:128-384
               
               
               Cow position:chr7:2172924-2172671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):81, 102

               
               
               Conread position:128-384
               
               
               Cow position:chr7:5853520-5853277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:128-384
               
               
               Cow position:chr7:23646787-23646525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 164

               
               
               Conread position:128-384
               
               
               Cow position:chr7:39472341-39472599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:128-384
               
               
               Cow position:chr7:40067834-40067577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):136, 59

               
               
               Conread position:128-384
               
               
               Cow position:chr7:59843581-59843836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):136, 15

               
               
               Conread position:128-384
               
               
               Cow position:chr7:61823679-61823936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):88, 8

               
               
               Conread position:129-333
               
               
               Cow position:chr7:14765954-14766153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):26, 74

               
               
               Conread position:129-384
               
               
               Cow position:chr7:17816920-17816672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:129-384
               
               
               Cow position:chr7:27283847-27283601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):136, 90

               
               
               Conread position:129-384
               
               
               Cow position:chr7:38082325-38082074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:191
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):146, 16

               
               
               Conread position:129-384
               
               
               Cow position:chr7:41327861-41328122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:129-384
               
               
               Cow position:chr7:45331713-45331467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):14, 108

               
               
               Conread position:129-384
               
               
               Cow position:chr7:58923569-58923314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):136, 23

               
               
               Conread position:129-384
               
               
               Cow position:chr7:68170429-68170681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):66, 23

               
               
               Conread position:130-382
               
               
               Cow position:chr7:33990123-33989879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):132, 8

               
               
               Conread position:130-384
               
               
               Cow position:chr7:40074855-40074593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):134, 14

               
               
               Conread position:131-271
               
               
               Cow position:chr7:1187047-1186907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):133, 23

               
               
               Conread position:131-300
               
               
               Cow position:chr7:43307346-43307177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):131, 157

               
               
               Conread position:131-347
               
               
               Cow position:chr7:11549835-11549620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):23, 88

               
               
               Conread position:131-355
               
               
               Cow position:chr7:15566924-15566700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):27, 153

               
               
               Conread position:131-368
               
               
               Cow position:chr7:24461122-24460893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):133, 144

               
               
               Conread position:131-378
               
               
               Cow position:chr7:33298270-33298519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):25, 121

               
               
               Conread position:131-378
               
               
               Cow position:chr7:38060255-38060504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:131-378
               
               
               Cow position:chr7:41464637-41464400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):135, 30

               
               
               Conread position:131-382
               
               
               Cow position:chr7:40189721-40189475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):133, 70

               
               
               Conread position:131-384
               
               
               Cow position:chr7:147586-147330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):80, 127

               
               
               Conread position:131-384
               
               
               Cow position:chr7:3256176-3256435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):133, 25

               
               
               Conread position:131-384
               
               
               Cow position:chr7:10512543-10512791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):139, 24

               
               
               Conread position:131-384
               
               
               Cow position:chr7:12408071-12408317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:131-384
               
               
               Cow position:chr7:23089976-23090212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):39, 44

               
               
               Conread position:131-384
               
               
               Cow position:chr7:34422101-34422350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):133, 30

               
               
               Conread position:131-384
               
               
               Cow position:chr7:40952694-40952943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):133, 84

               
               
               Conread position:131-384
               
               
               Cow position:chr7:44986824-44986569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):41, 52

               
               
               Conread position:131-384
               
               
               Cow position:chr7:48406321-48406578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):23, 157

               
               
               Conread position:131-384
               
               
               Cow position:chr7:49903942-49903694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-384
               
               
               Cow position:chr7:50095557-50095302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:131-384
               
               
               Cow position:chr7:57258852-57259110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):10, 27

               
               
               Conread position:131-384
               
               
               Cow position:chr7:62793970-62793704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 110

               
               
               Conread position:132-325
               
               
               Cow position:chr7:49405457-49405267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):132, 153

               
               
               Conread position:132-343
               
               
               Cow position:chr7:26485736-26485529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):165, 37

               
               
               Conread position:133-384
               
               
               Cow position:chr7:9800522-9800272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):63, 19

               
               
               Conread position:134-369
               
               
               Cow position:chr7:23936277-23936042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):163, 18

               
               
               Conread position:134-380
               
               
               Cow position:chr7:28544342-28544098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:134-382
               
               
               Cow position:chr7:53606167-53606401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):136, 25

               
               
               Conread position:134-384
               
               
               Cow position:chr7:9926567-9926812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 18

               
               
               Conread position:134-387
               
               
               Cow position:chr7:15739418-15739669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):130, 49

               
               
               Conread position:135-384
               
               
               Cow position:chr7:32915280-32915028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 11

               
               
               Conread position:135-384
               
               
               Cow position:chr7:41745299-41745556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):36, 56

               
               
               Conread position:135-384
               
               
               Cow position:chr7:64364363-64364608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):129, 12

               
               
               Conread position:136-379
               
               
               Cow position:chr7:36774532-36774290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:136-385
               
               
               Cow position:chr7:9193070-9193327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):18, 221

               
               
               Conread position:137-383
               
               
               Cow position:chr7:34412113-34412355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:137-384
               
               
               Cow position:chr7:25511959-25512205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):127, 136

               
               
               Conread position:138-385
               
               
               Cow position:chr7:51319969-51319716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):14, 27

               
               
               Conread position:139-384
               
               
               Cow position:chr7:11869677-11869921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):127, 94

               
               
               Conread position:141-376
               
               
               Cow position:chr7:19981686-19981918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):123, 10

               
               
               Conread position:142-384
               
               
               Cow position:chr7:6042132-6041895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):125, 59

               
               
               Conread position:142-390
               
               
               Cow position:chr7:30816132-30816375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):163, 80

               
               
               Conread position:146-364
               
               
               Cow position:chr7:29122056-29121840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):120, 74

               
               
               Conread position:146-384
               
               
               Cow position:chr7:255663-255895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):120, 72

               
               
               Conread position:146-384
               
               
               Cow position:chr7:14632520-14632295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):116, 7

               
               
               Conread position:146-384
               
               
               Cow position:chr7:39325882-39325659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):118, 75

               
               
               Conread position:147-301
               
               
               Cow position:chr7:52517481-52517325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:147-366
               
               
               Cow position:chr7:52758625-52758412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:147-377
               
               
               Cow position:chr7:18288115-18288342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):119, 75

               
               
               Conread position:147-378
               
               
               Cow position:chr7:25873254-25873025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):161, 139

               
               
               Conread position:147-382
               
               
               Cow position:chr7:52536097-52536336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):9, 181

               
               
               Conread position:147-384
               
               
               Cow position:chr7:1262184-1261942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):117, 158

               
               
               Conread position:147-384
               
               
               Cow position:chr7:26631657-26631896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 149

               
               
               Conread position:147-384
               
               
               Cow position:chr7:37362031-37361799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):117, 56

               
               
               Conread position:147-384
               
               
               Cow position:chr7:45747698-45747925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):117, 59

               
               
               Conread position:147-384
               
               
               Cow position:chr7:45956084-45955848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):150, 112

               
               
               Conread position:147-384
               
               
               Cow position:chr7:62193720-62193485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):123, 43

               
               
               Conread position:147-384
               
               
               Cow position:chr7:67820272-67820035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):9, 129

               
               
               Conread position:148-378
               
               
               Cow position:chr7:58350812-58351034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):116, 85

               
               
               Conread position:148-383
               
               
               Cow position:chr7:8977670-8977899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):44, 39

               
               
               Conread position:148-384
               
               
               Cow position:chr7:53697753-53697993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:150-327
               
               
               Cow position:chr7:43297062-43296882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):112, 138

               
               
               Conread position:150-384
               
               
               Cow position:chr7:5237930-5238149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):15, 136

               
               
               Conread position:150-384
               
               
               Cow position:chr7:7505974-7506217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):68, 139

               
               
               Conread position:151-296
               
               
               Cow position:chr7:9079105-9078964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):112, 74

               
               
               Conread position:151-384
               
               
               Cow position:chr7:29027290-29027074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:152-368
               
               
               Cow position:chr7:6058278-6058059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):110, 179

               
               
               Conread position:153-384
               
               
               Cow position:chr7:13133554-13133771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):112, 15

               
               
               Conread position:153-387
               
               
               Cow position:chr7:65122481-65122257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):115, 67

               
               
               Conread position:155-383
               
               
               Cow position:chr7:49648504-49648284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):109, 61

               
               
               Conread position:155-384
               
               
               Cow position:chr7:20556-20324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):114, 198

               
               
               Conread position:155-384
               
               
               Cow position:chr7:13228432-13228658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:155-384
               
               
               Cow position:chr7:32079598-32079372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):111, 51

               
               
               Conread position:155-384
               
               
               Cow position:chr7:35893563-35893335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):61, 35

               
               
               Conread position:156-300
               
               
               Cow position:chr7:29863895-29863751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):126, 26

               
               
               Conread position:156-332
               
               
               Cow position:chr7:39451003-39451181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:157-385
               
               
               Cow position:chr7:44049226-44049454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):107, 44

               
               
               Conread position:158-384
               
               
               Cow position:chr7:48243816-48243592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:159-384
               
               
               Cow position:chr7:45927021-45927239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):23, 9

               
               
               Conread position:161-384
               
               
               Cow position:chr7:5212335-5212560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):103, 124

               
               
               Conread position:162-384
               
               
               Cow position:chr7:3311979-3311762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):104, 78

               
               
               Conread position:163-384
               
               
               Cow position:chr7:8272801-8272578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:164-332
               
               
               Cow position:chr7:10759574-10759744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 131

               
               
               Conread position:164-332
               
               
               Cow position:chr7:35245453-35245620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):100, 54

               
               
               Conread position:168-343
               
               
               Cow position:chr7:2884471-2884299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):96, 64

               
               
               Conread position:169-384
               
               
               Cow position:chr7:25496857-25496652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):98, 52

               
               
               Conread position:173-384
               
               
               Cow position:chr7:27509844-27509637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):92, 110

               
               
               Conread position:174-384
               
               
               Cow position:chr7:8102549-8102340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:179-401
               
               
               Cow position:chr7:11854618-11854398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):85, 167

               
               
               Conread position:180-384
               
               
               Cow position:chr7:3283481-3283282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 60

               
               
               Conread position:180-384
               
               
               Cow position:chr7:39930406-39930210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):89, 33

               
               
               Conread position:180-384
               
               
               Cow position:chr7:42244579-42244775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):84, 33

               
               
               Conread position:181-384
               
               
               Cow position:chr7:19267248-19267451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):11, 77

               
               
               Conread position:185-343
               
               
               Cow position:chr7:4863931-4864084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:187-383
               
               
               Cow position:chr7:38263788-38263591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):77, 48

               
               
               Conread position:187-384
               
               
               Cow position:chr7:2923763-2923564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:187-384
               
               
               Cow position:chr7:3773151-3773350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):45, 59

               
               
               Conread position:187-384
               
               
               Cow position:chr7:17757148-17756956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):79, 36

               
               
               Conread position:189-378
               
               
               Cow position:chr7:45593152-45592964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):75, 111

               
               
               Conread position:192-384
               
               
               Cow position:chr7:34223804-34223608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:194-378
               
               
               Cow position:chr7:43882189-43882005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):66, 104

               
               
               Conread position:194-384
               
               
               Cow position:chr7:22623994-22624186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):70, 92

               
               
               Conread position:194-384
               
               
               Cow position:chr7:40121580-40121382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:195-376
               
               
               Cow position:chr7:25960573-25960394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):69, 90

               
               
               Conread position:198-384
               
               
               Cow position:chr7:14541965-14542140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:200-384
               
               
               Cow position:chr7:46105780-46105967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):52, 88

               
               
               Conread position:201-384
               
               
               Cow position:chr7:40051658-40051837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:202-384
               
               
               Cow position:chr7:51673479-51673660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):62, 84

               
               
               Conread position:208-384
               
               
               Cow position:chr7:14353694-14353871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):56, 78

               
               
               Conread position:224-384
               
               
               Cow position:chr7:28584325-28584165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 83

               
               
               Conread position:228-384
               
               
               Cow position:chr7:61817863-61818020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:230-383
               
               
               Cow position:chr7:32819891-32819735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:234-384
               
               
               Cow position:chr7:34979448-34979302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 51

               
               
               Conread position:243-394
               
               
               Cow position:chr7:26771930-26771774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-283
               
               
               Cow position:chr8:34820049-34820331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):133, 49

               
               
               Conread position:1-327
               
               
               Cow position:chr8:58393826-58393505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):263, 56

               
               
               Conread position:2-229
               
               
               Cow position:chr8:38461437-38461659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):25, 50

               
               
               Conread position:2-344
               
               
               Cow position:chr8:47170214-47169869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 78

               
               
               Conread position:3-238
               
               
               Cow position:chr8:51160301-51160530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 51

               
               
               Conread position:3-382
               
               
               Cow position:chr8:12778629-12778997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:253
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:4-323
               
               
               Cow position:chr8:46743052-46743367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):260, 33

               
               
               Conread position:4-379
               
               
               Cow position:chr8:42145503-42145884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):22, 40

               
               
               Conread position:5-291
               
               
               Cow position:chr8:10082146-10081884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:5-330
               
               
               Cow position:chr8:6248623-6248936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):259, 47

               
               
               Conread position:7-382
               
               
               Cow position:chr8:28322240-28321863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:260
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):27, 184

               
               
               Conread position:8-259
               
               
               Cow position:chr8:55122173-55122423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):39, 51

               
               
               Conread position:9-272
               
               
               Cow position:chr8:45879291-45879035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):49, 83

               
               
               Conread position:9-272
               
               
               Cow position:chr8:45925873-45925617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):49, 83

               
               
               Conread position:9-291
               
               
               Cow position:chr8:19727718-19727430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):23, 195

               
               
               Conread position:9-341
               
               
               Cow position:chr8:37709400-37709080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):15, 87

               
               
               Conread position:9-368
               
               
               Cow position:chr8:52197195-52197556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):55, 41

               
               
               Conread position:10-230
               
               
               Cow position:chr8:13922899-13922679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 48

               
               
               Conread position:11-317
               
               
               Cow position:chr8:51580884-51581195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:12-272
               
               
               Cow position:chr8:28210238-28209980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:12-378
               
               
               Cow position:chr8:37089836-37090189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):142, 7

               
               
               Conread position:13-224
               
               
               Cow position:chr8:3821721-3821937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:13-329
               
               
               Cow position:chr8:5730290-5729992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):9, 131

               
               
               Conread position:14-352
               
               
               Cow position:chr8:2525062-2524723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 81

               
               
               Conread position:17-348
               
               
               Cow position:chr8:4992800-4992482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):137, 36

               
               
               Conread position:17-384
               
               
               Cow position:chr8:3578889-3579251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:253
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):21, 48

               
               
               Conread position:18-384
               
               
               Cow position:chr8:25349959-25349599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:257
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):16, 114

               
               
               Conread position:20-241
               
               
               Cow position:chr8:54306603-54306385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:20-384
               
               
               Cow position:chr8:2866162-2865795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:251
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):29, 9

               
               
               Conread position:21-297
               
               
               Cow position:chr8:54062145-54061871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):117, 10

               
               
               Conread position:22-383
               
               
               Cow position:chr8:55717003-55716648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 127

               
               
               Conread position:23-377
               
               
               Cow position:chr8:15187498-15187149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 145

               
               
               Conread position:24-268
               
               
               Cow position:chr8:41888616-41888384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):240, 39

               
               
               Conread position:25-254
               
               
               Cow position:chr8:3057088-3056857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:25-384
               
               
               Cow position:chr8:30419291-30418932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:239
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):143, 119

               
               
               Conread position:26-249
               
               
               Cow position:chr8:8975954-8975726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:26-285
               
               
               Cow position:chr8:38643267-38643530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):12, 30

               
               
               Conread position:26-332
               
               
               Cow position:chr8:47890499-47890194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):22, 40

               
               
               Conread position:26-378
               
               
               Cow position:chr8:21222873-21222532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):111, 27

               
               
               Conread position:26-384
               
               
               Cow position:chr8:31297509-31297154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 31

               
               
               Conread position:26-385
               
               
               Cow position:chr8:1253209-1252838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):60, 38

               
               
               Conread position:27-231
               
               
               Cow position:chr8:39329622-39329821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):122, 22

               
               
               Conread position:27-255
               
               
               Cow position:chr8:1651837-1651609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 168

               
               
               Conread position:27-255
               
               
               Cow position:chr8:39350544-39350772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):123, 37

               
               
               Conread position:27-274
               
               
               Cow position:chr8:19810568-19810813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):120, 26

               
               
               Conread position:27-320
               
               
               Cow position:chr8:5467841-5468142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:27-340
               
               
               Cow position:chr8:522183-522500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):119, 48

               
               
               Conread position:27-384
               
               
               Cow position:chr8:53383642-53383287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):23, 63

               
               
               Conread position:28-251
               
               
               Cow position:chr8:39426430-39426197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 75

               
               
               Conread position:28-379
               
               
               Cow position:chr8:1620481-1620835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):12, 74

               
               
               Conread position:28-384
               
               
               Cow position:chr8:11612792-11612434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):37, 44

               
               
               Conread position:28-384
               
               
               Cow position:chr8:21220396-21220041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):162, 36

               
               
               Conread position:29-225
               
               
               Cow position:chr8:36385321-36385513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:29-249
               
               
               Cow position:chr8:6478086-6477869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):153, 62

               
               
               Conread position:29-249
               
               
               Cow position:chr8:21776153-21775943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 61

               
               
               Conread position:29-249
               
               
               Cow position:chr8:26961417-26961196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):125, 24

               
               
               Conread position:29-255
               
               
               Cow position:chr8:61848485-61848711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):8, 37

               
               
               Conread position:29-378
               
               
               Cow position:chr8:27954915-27955258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 24

               
               
               Conread position:29-378
               
               
               Cow position:chr8:48776060-48775712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):125, 35

               
               
               Conread position:29-381
               
               
               Cow position:chr8:60455417-60455085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):235, 24

               
               
               Conread position:29-384
               
               
               Cow position:chr8:15426990-15426640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):115, 24

               
               
               Conread position:29-384
               
               
               Cow position:chr8:16487054-16487422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):45, 21

               
               
               Conread position:29-384
               
               
               Cow position:chr8:38572025-38572387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 127

               
               
               Conread position:30-220
               
               
               Cow position:chr8:31767796-31767984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:30-335
               
               
               Cow position:chr8:20094162-20094467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):31, 148

               
               
               Conread position:30-348
               
               
               Cow position:chr8:18730698-18730368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):98, 265

               
               
               Conread position:30-378
               
               
               Cow position:chr8:34769734-34769397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):147, 19

               
               
               Conread position:30-384
               
               
               Cow position:chr8:23179293-23179657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:262
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):98, 33

               
               
               Conread position:30-384
               
               
               Cow position:chr8:32854595-32854925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):234, 97

               
               
               Conread position:30-387
               
               
               Cow position:chr8:19204204-19204561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):114, 34

               
               
               Conread position:31-346
               
               
               Cow position:chr8:32130470-32130161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:31-367
               
               
               Cow position:chr8:4203614-4203950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):123, 22

               
               
               Conread position:31-367
               
               
               Cow position:chr8:44674921-44674598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):105, 19

               
               
               Conread position:31-384
               
               
               Cow position:chr8:20107553-20107897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 117

               
               
               Conread position:31-386
               
               
               Cow position:chr8:37167983-37167630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):95, 22

               
               
               Conread position:32-249
               
               
               Cow position:chr8:43052211-43051993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 33

               
               
               Conread position:32-252
               
               
               Cow position:chr8:21940588-21940809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):114, 32

               
               
               Conread position:32-265
               
               
               Cow position:chr8:33807488-33807711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 97

               
               
               Conread position:32-309
               
               
               Cow position:chr8:36299652-36299931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):114, 145

               
               
               Conread position:32-378
               
               
               Cow position:chr8:59642255-59642604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):115, 42

               
               
               Conread position:32-384
               
               
               Cow position:chr8:6194220-6193856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:32-384
               
               
               Cow position:chr8:24867506-24867855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 62

               
               
               Conread position:32-384
               
               
               Cow position:chr8:39181538-39181882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):142, 21

               
               
               Conread position:32-387
               
               
               Cow position:chr8:6616544-6616913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):95, 21

               
               
               Conread position:33-271
               
               
               Cow position:chr8:28086398-28086155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:33-271
               
               
               Cow position:chr8:32047308-32047065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 20

               
               
               Conread position:33-273
               
               
               Cow position:chr8:24905717-24905463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:33-378
               
               
               Cow position:chr8:12058959-12058615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:33-378
               
               
               Cow position:chr8:38356619-38356955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):122, 20

               
               
               Conread position:33-384
               
               
               Cow position:chr8:36375283-36375622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 97

               
               
               Conread position:33-384
               
               
               Cow position:chr8:47135785-47136121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 80

               
               
               Conread position:34-247
               
               
               Cow position:chr8:31902453-31902664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):200, 94

               
               
               Conread position:34-249
               
               
               Cow position:chr8:51443459-51443679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:34-308
               
               
               Cow position:chr8:1177656-1177916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):227, 19

               
               
               Conread position:34-348
               
               
               Cow position:chr8:53338426-53338744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):7, 48

               
               
               Conread position:34-383
               
               
               Cow position:chr8:15390930-15391275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 19

               
               
               Conread position:34-384
               
               
               Cow position:chr8:8189828-8190179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 19

               
               
               Conread position:34-384
               
               
               Cow position:chr8:20212265-20212622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):113, 19

               
               
               Conread position:34-384
               
               
               Cow position:chr8:54052529-54052196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 14

               
               
               Conread position:35-225
               
               
               Cow position:chr8:34093006-34092809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 44

               
               
               Conread position:35-272
               
               
               Cow position:chr8:20327619-20327852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):109, 18

               
               
               Conread position:35-272
               
               
               Cow position:chr8:35497452-35497682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):229, 18

               
               
               Conread position:35-317
               
               
               Cow position:chr8:32312056-32311782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:35-373
               
               
               Cow position:chr8:23136505-23136844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):114, 19

               
               
               Conread position:35-384
               
               
               Cow position:chr8:20783027-20783378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):96, 141

               
               
               Conread position:36-283
               
               
               Cow position:chr8:37672275-37672022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):117, 15

               
               
               Conread position:36-352
               
               
               Cow position:chr8:39487409-39487718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):108, 18

               
               
               Conread position:36-386
               
               
               Cow position:chr8:3976464-3976113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):110, 17

               
               
               Conread position:37-241
               
               
               Cow position:chr8:6005876-6006081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 27

               
               
               Conread position:37-274
               
               
               Cow position:chr8:24406410-24406643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):101, 27

               
               
               Conread position:37-335
               
               
               Cow position:chr8:21600686-21600383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):98, 254

               
               
               Conread position:37-348
               
               
               Cow position:chr8:3921549-3921228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):117, 27

               
               
               Conread position:37-383
               
               
               Cow position:chr8:25388387-25388030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:252
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):85, 215

               
               
               Conread position:37-384
               
               
               Cow position:chr8:6724131-6724450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):19, 72

               
               
               Conread position:37-384
               
               
               Cow position:chr8:8667950-8668314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):15, 154

               
               
               Conread position:37-384
               
               
               Cow position:chr8:33125724-33125391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):227, 55

               
               
               Conread position:38-238
               
               
               Cow position:chr8:26881596-26881795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):133, 26

               
               
               Conread position:38-243
               
               
               Cow position:chr8:34556397-34556193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):106, 15

               
               
               Conread position:38-249
               
               
               Cow position:chr8:37148550-37148332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):20, 154

               
               
               Conread position:38-331
               
               
               Cow position:chr8:61845319-61845617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):116, 18

               
               
               Conread position:38-346
               
               
               Cow position:chr8:55974585-55974891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):74, 19

               
               
               Conread position:38-384
               
               
               Cow position:chr8:20926393-20926754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):11, 28

               
               
               Conread position:38-385
               
               
               Cow position:chr8:23110817-23111182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:248
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):99, 15

               
               
               Conread position:39-255
               
               
               Cow position:chr8:48700205-48699989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:39-378
               
               
               Cow position:chr8:34799925-34799568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 142

               
               
               Conread position:39-384
               
               
               Cow position:chr8:6232667-6233011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):25, 32

               
               
               Conread position:39-384
               
               
               Cow position:chr8:29149632-29149985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):149, 25

               
               
               Conread position:40-252
               
               
               Cow position:chr8:24419056-24419258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:40-309
               
               
               Cow position:chr8:5477624-5477887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):219, 87

               
               
               Conread position:40-319
               
               
               Cow position:chr8:55070942-55070664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):224, 17

               
               
               Conread position:40-383
               
               
               Cow position:chr8:537680-538028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):17, 44

               
               
               Conread position:40-384
               
               
               Cow position:chr8:1304137-1303792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 112

               
               
               Conread position:41-384
               
               
               Cow position:chr8:10971061-10970718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 13

               
               
               Conread position:42-282
               
               
               Cow position:chr8:3887560-3887320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):85, 49

               
               
               Conread position:42-390
               
               
               Cow position:chr8:572934-573268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):198, 112

               
               
               Conread position:43-346
               
               
               Cow position:chr8:20851037-20851349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 88

               
               
               Conread position:43-382
               
               
               Cow position:chr8:38894246-38893898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 43

               
               
               Conread position:43-384
               
               
               Cow position:chr8:5894155-5893830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):17, 50

               
               
               Conread position:43-384
               
               
               Cow position:chr8:12214226-12213900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 97

               
               
               Conread position:43-384
               
               
               Cow position:chr8:47342965-47342621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):111, 21

               
               
               Conread position:45-275
               
               
               Cow position:chr8:5499315-5499081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):99, 8

               
               
               Conread position:45-330
               
               
               Cow position:chr8:18170774-18171077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:46-238
               
               
               Cow position:chr8:36034741-36034935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:46-378
               
               
               Cow position:chr8:47751689-47752019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):116, 7

               
               
               Conread position:46-384
               
               
               Cow position:chr8:6951742-6951418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):13, 47

               
               
               Conread position:46-384
               
               
               Cow position:chr8:24471887-24471536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):21, 59

               
               
               Conread position:47-202
               
               
               Cow position:chr8:41466198-41466358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:47-238
               
               
               Cow position:chr8:2181276-2181469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):100, 129

               
               
               Conread position:47-307
               
               
               Cow position:chr8:60339704-60339957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):19, 81

               
               
               Conread position:47-342
               
               
               Cow position:chr8:7204531-7204822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):100, 18

               
               
               Conread position:47-353
               
               
               Cow position:chr8:21911865-21911556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):97, 10

               
               
               Conread position:47-376
               
               
               Cow position:chr8:47328568-47328245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:47-384
               
               
               Cow position:chr8:18831968-18831620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):52, 10

               
               
               Conread position:47-384
               
               
               Cow position:chr8:55885194-55884858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 10

               
               
               Conread position:48-255
               
               
               Cow position:chr8:42378674-42378881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):7, 18

               
               
               Conread position:48-318
               
               
               Cow position:chr8:4593153-4593425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 17

               
               
               Conread position:48-326
               
               
               Cow position:chr8:3925846-3926124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):90, 16

               
               
               Conread position:48-332
               
               
               Cow position:chr8:10336820-10337099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 95

               
               
               Conread position:48-343
               
               
               Cow position:chr8:8915734-8916027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):134, 5

               
               
               Conread position:48-379
               
               
               Cow position:chr8:35456618-35456950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):99, 16

               
               
               Conread position:48-383
               
               
               Cow position:chr8:26626095-26625760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:238
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):14, 131

               
               
               Conread position:48-384
               
               
               Cow position:chr8:2775013-2774672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):84, 5

               
               
               Conread position:48-384
               
               
               Cow position:chr8:16061295-16060973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):92, 182

               
               
               Conread position:48-384
               
               
               Cow position:chr8:32133485-32133159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 9

               
               
               Conread position:49-220
               
               
               Cow position:chr8:16053911-16053744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:49-229
               
               
               Cow position:chr8:36860687-36860512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:49-252
               
               
               Cow position:chr8:5665465-5665675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 142

               
               
               Conread position:49-260
               
               
               Cow position:chr8:6675414-6675208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:164
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:49-361
               
               
               Cow position:chr8:6909939-6910250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):97, 67

               
               
               Conread position:49-384
               
               
               Cow position:chr8:42762214-42762544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 21

               
               
               Conread position:49-384
               
               
               Cow position:chr8:59346042-59345708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:50-238
               
               
               Cow position:chr8:37437131-37437318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):114, 135

               
               
               Conread position:50-244
               
               
               Cow position:chr8:61554764-61554952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):142, 44

               
               
               Conread position:50-248
               
               
               Cow position:chr8:29173427-29173232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:50-252
               
               
               Cow position:chr8:44126692-44126488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 137

               
               
               Conread position:50-252
               
               
               Cow position:chr8:61739457-61739651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:50-259
               
               
               Cow position:chr8:46543900-46544107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):14, 145

               
               
               Conread position:50-262
               
               
               Cow position:chr8:47057443-47057655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):114, 135

               
               
               Conread position:50-273
               
               
               Cow position:chr8:38843405-38843630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):106, 14

               
               
               Conread position:50-275
               
               
               Cow position:chr8:55961447-55961671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 132

               
               
               Conread position:50-282
               
               
               Cow position:chr8:9655794-9655564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):10, 148

               
               
               Conread position:50-320
               
               
               Cow position:chr8:38852313-38852035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):65, 210

               
               
               Conread position:50-328
               
               
               Cow position:chr8:55089637-55089908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):214, 42

               
               
               Conread position:50-328
               
               
               Cow position:chr8:55247374-55247650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):38, 93

               
               
               Conread position:50-329
               
               
               Cow position:chr8:36531380-36531661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):94, 15

               
               
               Conread position:50-331
               
               
               Cow position:chr8:1665854-1666137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):104, 17

               
               
               Conread position:50-332
               
               
               Cow position:chr8:51524227-51523950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):97, 117

               
               
               Conread position:50-352
               
               
               Cow position:chr8:18729004-18728704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 79

               
               
               Conread position:50-366
               
               
               Cow position:chr8:6661185-6661505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:50-371
               
               
               Cow position:chr8:20052371-20052050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):97, 14

               
               
               Conread position:50-373
               
               
               Cow position:chr8:11277885-11278209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):94, 41

               
               
               Conread position:50-377
               
               
               Cow position:chr8:24371491-24371823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 120

               
               
               Conread position:50-378
               
               
               Cow position:chr8:35827583-35827912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):78, 14

               
               
               Conread position:50-378
               
               
               Cow position:chr8:39592812-39592484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):11, 241

               
               
               Conread position:50-380
               
               
               Cow position:chr8:58636952-58636654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 72

               
               
               Conread position:50-383
               
               
               Cow position:chr8:43112631-43112948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):214, 94

               
               
               Conread position:50-383
               
               
               Cow position:chr8:54303233-54302916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:241
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:50-384
               
               
               Cow position:chr8:1188133-1187803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):214, 88

               
               
               Conread position:50-384
               
               
               Cow position:chr8:2904187-2904528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):28, 139

               
               
               Conread position:50-384
               
               
               Cow position:chr8:16653652-16653307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:244
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr8:18017740-18017404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):99, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr8:19284721-19284388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 46

               
               
               Conread position:50-384
               
               
               Cow position:chr8:23018297-23018620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 7

               
               
               Conread position:50-384
               
               
               Cow position:chr8:23030647-23030312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):102, 30

               
               
               Conread position:50-384
               
               
               Cow position:chr8:24980935-24980586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:249
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr8:32332250-32332602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):5, 138

               
               
               Conread position:50-384
               
               
               Cow position:chr8:32620759-32621105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:50-384
               
               
               Cow position:chr8:33640583-33640249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 36

               
               
               Conread position:50-384
               
               
               Cow position:chr8:34259373-34259047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):69, 103

               
               
               Conread position:50-384
               
               
               Cow position:chr8:37347227-37347573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):16, 47

               
               
               Conread position:50-384
               
               
               Cow position:chr8:38861499-38861810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):214, 62

               
               
               Conread position:50-384
               
               
               Cow position:chr8:40280907-40280575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 173

               
               
               Conread position:50-384
               
               
               Cow position:chr8:43439825-43439497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 15

               
               
               Conread position:50-384
               
               
               Cow position:chr8:58058962-58058628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:50-384
               
               
               Cow position:chr8:59131178-59131515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):38, 130

               
               
               Conread position:50-388
               
               
               Cow position:chr8:15922040-15922384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 142

               
               
               Conread position:50-442
               
               
               Cow position:chr8:28378546-28378925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:270
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):82, 23

               
               
               Conread position:51-252
               
               
               Cow position:chr8:34035892-34035696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):113, 87

               
               
               Conread position:51-296
               
               
               Cow position:chr8:31265691-31265932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):5, 78

               
               
               Conread position:51-332
               
               
               Cow position:chr8:55502798-55502532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 35

               
               
               Conread position:51-378
               
               
               Cow position:chr8:8323645-8323977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):10, 75

               
               
               Conread position:51-384
               
               
               Cow position:chr8:15694260-15694590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):93, 44

               
               
               Conread position:51-384
               
               
               Cow position:chr8:37298699-37298365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):9, 139

               
               
               Conread position:52-196
               
               
               Cow position:chr8:1141905-1141760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:52-243
               
               
               Cow position:chr8:47707303-47707486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:52-258
               
               
               Cow position:chr8:11003578-11003787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:52-380
               
               
               Cow position:chr8:25628545-25628241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):188, 40

               
               
               Conread position:52-384
               
               
               Cow position:chr8:38780940-38780596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 144

               
               
               Conread position:52-384
               
               
               Cow position:chr8:60127065-60126739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):23, 91

               
               
               Conread position:53-250
               
               
               Cow position:chr8:49543098-49542903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 48

               
               
               Conread position:53-267
               
               
               Cow position:chr8:32304156-32303931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 138

               
               
               Conread position:53-296
               
               
               Cow position:chr8:46799063-46799309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):11, 124

               
               
               Conread position:53-297
               
               
               Cow position:chr8:5937642-5937390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):96, 133

               
               
               Conread position:53-302
               
               
               Cow position:chr8:5877855-5877612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 11

               
               
               Conread position:53-313
               
               
               Cow position:chr8:4796963-4796723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):250, 39

               
               
               Conread position:53-314
               
               
               Cow position:chr8:38612537-38612800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):100, 133

               
               
               Conread position:53-316
               
               
               Cow position:chr8:18091542-18091277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):99, 55

               
               
               Conread position:53-316
               
               
               Cow position:chr8:37559340-37559085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 11

               
               
               Conread position:53-317
               
               
               Cow position:chr8:10261896-10262159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):206, 11

               
               
               Conread position:53-347
               
               
               Cow position:chr8:45860029-45859732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):7, 126

               
               
               Conread position:53-349
               
               
               Cow position:chr8:39066445-39066136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):75, 11

               
               
               Conread position:53-352
               
               
               Cow position:chr8:4333823-4334120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:53-363
               
               
               Cow position:chr8:16957828-16957538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):211, 75

               
               
               Conread position:53-369
               
               
               Cow position:chr8:46082383-46082069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 94

               
               
               Conread position:53-378
               
               
               Cow position:chr8:61128484-61128802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):198, 75

               
               
               Conread position:53-379
               
               
               Cow position:chr8:17199214-17199540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 11

               
               
               Conread position:53-380
               
               
               Cow position:chr8:9402145-9401814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):16, 60

               
               
               Conread position:53-383
               
               
               Cow position:chr8:61537632-61537953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):200, 92

               
               
               Conread position:53-384
               
               
               Cow position:chr8:2897384-2897731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):75, 149

               
               
               Conread position:53-384
               
               
               Cow position:chr8:19716898-19717208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):13, 88

               
               
               Conread position:53-384
               
               
               Cow position:chr8:23585744-23586069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:53-384
               
               
               Cow position:chr8:31776411-31776074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:222
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):98, 11

               
               
               Conread position:53-384
               
               
               Cow position:chr8:54032090-54031760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):140, 11

               
               
               Conread position:53-385
               
               
               Cow position:chr8:35563566-35563217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):39, 122

               
               
               Conread position:53-387
               
               
               Cow position:chr8:19979870-19980192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):102, 52

               
               
               Conread position:53-390
               
               
               Cow position:chr8:31985475-31985147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 30

               
               
               Conread position:54-220
               
               
               Cow position:chr8:46616601-46616438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:54-234
               
               
               Cow position:chr8:30868513-30868695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:54-248
               
               
               Cow position:chr8:50682319-50682126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):7, 26

               
               
               Conread position:54-270
               
               
               Cow position:chr8:35816900-35817119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 123

               
               
               Conread position:54-318
               
               
               Cow position:chr8:11864167-11863904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):112, 134

               
               
               Conread position:54-355
               
               
               Cow position:chr8:4525292-4525000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):210, 62

               
               
               Conread position:54-378
               
               
               Cow position:chr8:22274079-22273756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):95, 133

               
               
               Conread position:54-383
               
               
               Cow position:chr8:1297725-1297400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):92, 17

               
               
               Conread position:54-384
               
               
               Cow position:chr8:26009100-26008767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):90, 136

               
               
               Conread position:54-384
               
               
               Cow position:chr8:29029861-29030212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 62

               
               
               Conread position:55-196
               
               
               Cow position:chr8:20850145-20850281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:55-327
               
               
               Cow position:chr8:5437976-5437705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):212, 76

               
               
               Conread position:55-384
               
               
               Cow position:chr8:28229261-28229575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:56-247
               
               
               Cow position:chr8:40160993-40161187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 124

               
               
               Conread position:56-251
               
               
               Cow position:chr8:23370106-23370286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:56-298
               
               
               Cow position:chr8:55194389-55194144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:182
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:56-332
               
               
               Cow position:chr8:3662329-3662616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):64, 137

               
               
               Conread position:56-345
               
               
               Cow position:chr8:49305534-49305820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 190

               
               
               Conread position:56-382
               
               
               Cow position:chr8:54177499-54177824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):72, 49

               
               
               Conread position:57-224
               
               
               Cow position:chr8:56986453-56986287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:57-231
               
               
               Cow position:chr8:38790170-38789995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):92, 133

               
               
               Conread position:57-241
               
               
               Cow position:chr8:53624610-53624797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):54, 133

               
               
               Conread position:57-251
               
               
               Cow position:chr8:35452786-35452594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:57-282
               
               
               Cow position:chr8:38639448-38639225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):208, 78

               
               
               Conread position:57-283
               
               
               Cow position:chr8:42112603-42112838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):73, 37

               
               
               Conread position:57-284
               
               
               Cow position:chr8:19616519-19616302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):16, 35

               
               
               Conread position:57-302
               
               
               Cow position:chr8:20910863-20911107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):81, 35

               
               
               Conread position:57-348
               
               
               Cow position:chr8:59056084-59056380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):91, 133

               
               
               Conread position:57-352
               
               
               Cow position:chr8:61157018-61157318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 88

               
               
               Conread position:57-368
               
               
               Cow position:chr8:41721978-41722279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):77, 121

               
               
               Conread position:57-378
               
               
               Cow position:chr8:53633026-53633334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):207, 29

               
               
               Conread position:57-383
               
               
               Cow position:chr8:8986716-8987055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 276

               
               
               Conread position:57-384
               
               
               Cow position:chr8:3445884-3446212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):73, 63

               
               
               Conread position:57-384
               
               
               Cow position:chr8:6224229-6224548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 34

               
               
               Conread position:57-384
               
               
               Cow position:chr8:44437965-44437652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):179, 61

               
               
               Conread position:57-384
               
               
               Cow position:chr8:46235919-46235590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 172

               
               
               Conread position:58-282
               
               
               Cow position:chr8:40633655-40633879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:58-331
               
               
               Cow position:chr8:26315292-26315554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):225, 86

               
               
               Conread position:58-338
               
               
               Cow position:chr8:61443007-61443283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):52, 67

               
               
               Conread position:58-355
               
               
               Cow position:chr8:51209004-51208689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:58-378
               
               
               Cow position:chr8:28228451-28228143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):107, 40

               
               
               Conread position:58-379
               
               
               Cow position:chr8:46964950-46964617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):69, 119

               
               
               Conread position:58-384
               
               
               Cow position:chr8:24328635-24328960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):100, 36

               
               
               Conread position:58-384
               
               
               Cow position:chr8:25455599-25455295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):204, 49

               
               
               Conread position:58-384
               
               
               Cow position:chr8:39807812-39807481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 273

               
               
               Conread position:58-384
               
               
               Cow position:chr8:43687769-43687429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:58-411
               
               
               Cow position:chr8:37215640-37215301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:240
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):128, 63

               
               
               Conread position:59-215
               
               
               Cow position:chr8:28382873-28383031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:59-235
               
               
               Cow position:chr8:48210762-48210939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 81

               
               
               Conread position:59-238
               
               
               Cow position:chr8:6416949-6417129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):97, 114

               
               
               Conread position:59-244
               
               
               Cow position:chr8:26147785-26147602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):105, 68

               
               
               Conread position:59-247
               
               
               Cow position:chr8:39380083-39380266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):107, 79

               
               
               Conread position:59-249
               
               
               Cow position:chr8:1970871-1971063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):110, 36

               
               
               Conread position:59-249
               
               
               Cow position:chr8:5173073-5173263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:59-249
               
               
               Cow position:chr8:6184026-6184217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):97, 11

               
               
               Conread position:59-249
               
               
               Cow position:chr8:11216647-11216833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:59-249
               
               
               Cow position:chr8:20897559-20897367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):105, 118

               
               
               Conread position:59-249
               
               
               Cow position:chr8:55725555-55725746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 156

               
               
               Conread position:59-252
               
               
               Cow position:chr8:5185747-5185547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 135

               
               
               Conread position:59-257
               
               
               Cow position:chr8:58081887-58082090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):68, 162

               
               
               Conread position:59-262
               
               
               Cow position:chr8:47679716-47679519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):144, 73

               
               
               Conread position:59-266
               
               
               Cow position:chr8:29934256-29934048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):119, 86

               
               
               Conread position:59-271
               
               
               Cow position:chr8:13118580-13118369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):105, 128

               
               
               Conread position:59-271
               
               
               Cow position:chr8:19785069-19784861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):205, 97

               
               
               Conread position:59-274
               
               
               Cow position:chr8:20105660-20105877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):87, 131

               
               
               Conread position:59-278
               
               
               Cow position:chr8:48555451-48555664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):205, 35

               
               
               Conread position:59-283
               
               
               Cow position:chr8:11124355-11124575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):112, 92

               
               
               Conread position:59-287
               
               
               Cow position:chr8:3914809-3914574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 116

               
               
               Conread position:59-289
               
               
               Cow position:chr8:58336125-58336369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):61, 128

               
               
               Conread position:59-295
               
               
               Cow position:chr8:46479672-46479906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):86, 54

               
               
               Conread position:59-329
               
               
               Cow position:chr8:52773145-52772872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):208, 229

               
               
               Conread position:59-335
               
               
               Cow position:chr8:4655931-4656195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):129, 68

               
               
               Conread position:59-348
               
               
               Cow position:chr8:6665330-6665628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):78, 137

               
               
               Conread position:59-355
               
               
               Cow position:chr8:27731251-27730954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):87, 128

               
               
               Conread position:59-358
               
               
               Cow position:chr8:43940686-43940986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):88, 114

               
               
               Conread position:59-364
               
               
               Cow position:chr8:47413135-47412828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):49, 103

               
               
               Conread position:59-367
               
               
               Cow position:chr8:53552884-53552582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:59-378
               
               
               Cow position:chr8:17046548-17046868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):90, 119

               
               
               Conread position:59-378
               
               
               Cow position:chr8:51661386-51661706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):45, 131

               
               
               Conread position:59-379
               
               
               Cow position:chr8:41905409-41905725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):82, 165

               
               
               Conread position:59-379
               
               
               Cow position:chr8:41914317-41914633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):82, 165

               
               
               Conread position:59-379
               
               
               Cow position:chr8:60746855-60746539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):77, 135

               
               
               Conread position:59-381
               
               
               Cow position:chr8:24512933-24513256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):90, 125

               
               
               Conread position:59-382
               
               
               Cow position:chr8:38711798-38711490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:59-383
               
               
               Cow position:chr8:948739-948434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):205, 60

               
               
               Conread position:59-383
               
               
               Cow position:chr8:8924132-8924462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 35

               
               
               Conread position:59-383
               
               
               Cow position:chr8:53606307-53606630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):87, 128

               
               
               Conread position:59-384
               
               
               Cow position:chr8:4500699-4500378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 67

               
               
               Conread position:59-384
               
               
               Cow position:chr8:9942312-9942640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):95, 113

               
               
               Conread position:59-384
               
               
               Cow position:chr8:18870095-18869777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):61, 128

               
               
               Conread position:59-384
               
               
               Cow position:chr8:19642678-19642357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):105, 85

               
               
               Conread position:59-384
               
               
               Cow position:chr8:37291875-37292199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):90, 129

               
               
               Conread position:59-384
               
               
               Cow position:chr8:37571492-37571818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 126

               
               
               Conread position:59-384
               
               
               Cow position:chr8:48482591-48482927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:228
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):40, 137

               
               
               Conread position:59-397
               
               
               Cow position:chr8:27138587-27138924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):106, 33

               
               
               Conread position:59-412
               
               
               Cow position:chr8:11964502-11964161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):105, 61

               
               
               Conread position:60-253
               
               
               Cow position:chr8:8766923-8767120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):76, 129

               
               
               Conread position:60-255
               
               
               Cow position:chr8:5484360-5484557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:60-261
               
               
               Cow position:chr8:39898896-39898706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):180, 32

               
               
               Conread position:60-262
               
               
               Cow position:chr8:8714999-8714803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:60-268
               
               
               Cow position:chr8:22599880-22600093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):97, 121

               
               
               Conread position:60-269
               
               
               Cow position:chr8:53587113-53587316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):48, 59

               
               
               Conread position:60-275
               
               
               Cow position:chr8:51501077-51501290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):171, 85

               
               
               Conread position:60-325
               
               
               Cow position:chr8:55454872-55454616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 67

               
               
               Conread position:60-332
               
               
               Cow position:chr8:25272042-25271766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):87, 116

               
               
               Conread position:60-361
               
               
               Cow position:chr8:26305653-26305954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):76, 128

               
               
               Conread position:60-378
               
               
               Cow position:chr8:48512816-48513114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):204, 34

               
               
               Conread position:60-378
               
               
               Cow position:chr8:61067494-61067184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:60-384
               
               
               Cow position:chr8:16938271-16938570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):204, 79

               
               
               Conread position:60-384
               
               
               Cow position:chr8:35972059-35971737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 88

               
               
               Conread position:60-384
               
               
               Cow position:chr8:48527754-48528076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 36

               
               
               Conread position:60-384
               
               
               Cow position:chr8:55897608-55897918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):126, 26

               
               
               Conread position:60-387
               
               
               Cow position:chr8:44449396-44449713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 31

               
               
               Conread position:60-388
               
               
               Cow position:chr8:52925522-52925834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):208, 91

               
               
               Conread position:61-238
               
               
               Cow position:chr8:6160982-6160810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):119, 100

               
               
               Conread position:61-247
               
               
               Cow position:chr8:16216268-16216083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):105, 68

               
               
               Conread position:61-255
               
               
               Cow position:chr8:54546808-54546607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:61-344
               
               
               Cow position:chr8:20033708-20033988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):96, 55

               
               
               Conread position:61-348
               
               
               Cow position:chr8:26284645-26284932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):82, 52

               
               
               Conread position:61-348
               
               
               Cow position:chr8:53746363-53746653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):140, 80

               
               
               Conread position:61-382
               
               
               Cow position:chr8:19474871-19475197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):85, 122

               
               
               Conread position:61-382
               
               
               Cow position:chr8:33406646-33406955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 61

               
               
               Conread position:61-383
               
               
               Cow position:chr8:59250933-59250620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 80

               
               
               Conread position:61-384
               
               
               Cow position:chr8:1024169-1023851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):104, 108

               
               
               Conread position:61-384
               
               
               Cow position:chr8:27608677-27608336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):83, 126

               
               
               Conread position:61-384
               
               
               Cow position:chr8:37391149-37391470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 95

               
               
               Conread position:61-384
               
               
               Cow position:chr8:37635787-37636103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 65

               
               
               Conread position:62-377
               
               
               Cow position:chr8:52657367-52657067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):109, 71

               
               
               Conread position:62-383
               
               
               Cow position:chr8:42794105-42794426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 231

               
               
               Conread position:62-384
               
               
               Cow position:chr8:16413605-16413923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):83, 29

               
               
               Conread position:62-384
               
               
               Cow position:chr8:17179833-17180139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):202, 29

               
               
               Conread position:63-330
               
               
               Cow position:chr8:22615247-22615514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):123, 102

               
               
               Conread position:63-368
               
               
               Cow position:chr8:16144340-16144031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):83, 108

               
               
               Conread position:63-384
               
               
               Cow position:chr8:935913-935594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):86, 60

               
               
               Conread position:63-446
               
               
               Cow position:chr8:46874757-46874380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):194, 92

               
               
               Conread position:64-255
               
               
               Cow position:chr8:25639899-25640085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:64-380
               
               
               Cow position:chr8:19995525-19995840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):114, 225

               
               
               Conread position:64-384
               
               
               Cow position:chr8:834619-834297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 52

               
               
               Conread position:64-384
               
               
               Cow position:chr8:21858504-21858820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 197

               
               
               Conread position:64-384
               
               
               Cow position:chr8:58520491-58520177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):58, 65

               
               
               Conread position:65-279
               
               
               Cow position:chr8:47410287-47410073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):198, 100

               
               
               Conread position:65-384
               
               
               Cow position:chr8:47283862-47284179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):69, 143

               
               
               Conread position:67-282
               
               
               Cow position:chr8:34059959-34060174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):197, 84

               
               
               Conread position:68-383
               
               
               Cow position:chr8:5933833-5934159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):76, 108

               
               
               Conread position:69-348
               
               
               Cow position:chr8:16505689-16505418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):195, 46

               
               
               Conread position:69-366
               
               
               Cow position:chr8:61567171-61567470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):60, 176

               
               
               Conread position:69-373
               
               
               Cow position:chr8:8097064-8097366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):70, 14

               
               
               Conread position:69-384
               
               
               Cow position:chr8:9509695-9510002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):83, 52

               
               
               Conread position:69-384
               
               
               Cow position:chr8:20091513-20091200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):66, 119

               
               
               Conread position:70-376
               
               
               Cow position:chr8:20842736-20843039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):127, 25

               
               
               Conread position:71-378
               
               
               Cow position:chr8:47549746-47550040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 85

               
               
               Conread position:71-384
               
               
               Cow position:chr8:6073621-6073928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 52

               
               
               Conread position:72-233
               
               
               Cow position:chr8:35936960-35936803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:72-255
               
               
               Cow position:chr8:3423204-3423021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):77, 114

               
               
               Conread position:72-313
               
               
               Cow position:chr8:58598835-58598596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):120, 68

               
               
               Conread position:72-344
               
               
               Cow position:chr8:20320684-20320419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):192, 20

               
               
               Conread position:72-365
               
               
               Cow position:chr8:20150363-20150649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):190, 54

               
               
               Conread position:72-379
               
               
               Cow position:chr8:30324515-30324208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):193, 53

               
               
               Conread position:72-384
               
               
               Cow position:chr8:3015679-3015360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 81

               
               
               Conread position:72-384
               
               
               Cow position:chr8:10456660-10456352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):194, 30

               
               
               Conread position:72-384
               
               
               Cow position:chr8:26651485-26651180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):192, 42

               
               
               Conread position:72-384
               
               
               Cow position:chr8:40032605-40032926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):55, 200

               
               
               Conread position:72-384
               
               
               Cow position:chr8:43903971-43903652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):84, 115

               
               
               Conread position:72-384
               
               
               Cow position:chr8:50310654-50310968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):189, 89

               
               
               Conread position:72-384
               
               
               Cow position:chr8:55360756-55360453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):72, 22

               
               
               Conread position:72-397
               
               
               Cow position:chr8:57406966-57406631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):58, 265

               
               
               Conread position:72-400
               
               
               Cow position:chr8:41219527-41219202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 265

               
               
               Conread position:73-384
               
               
               Cow position:chr8:15394661-15394975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):65, 98

               
               
               Conread position:74-241
               
               
               Cow position:chr8:3793349-3793182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):61, 75

               
               
               Conread position:74-374
               
               
               Cow position:chr8:19857771-19858076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):52, 115

               
               
               Conread position:74-378
               
               
               Cow position:chr8:36768674-36768367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:74-384
               
               
               Cow position:chr8:1999828-1999505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):75, 121

               
               
               Conread position:75-382
               
               
               Cow position:chr8:18081723-18081428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):189, 67

               
               
               Conread position:79-332
               
               
               Cow position:chr8:32278154-32278411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 130

               
               
               Conread position:79-347
               
               
               Cow position:chr8:24126161-24125902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):58, 85

               
               
               Conread position:79-368
               
               
               Cow position:chr8:43857866-43858150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):70, 31

               
               
               Conread position:80-377
               
               
               Cow position:chr8:9168625-9168916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:196
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):76, 88

               
               
               Conread position:80-379
               
               
               Cow position:chr8:19546983-19546679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):72, 229

               
               
               Conread position:80-384
               
               
               Cow position:chr8:21207072-21206768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):24, 46

               
               
               Conread position:83-383
               
               
               Cow position:chr8:36249231-36249533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):83, 61

               
               
               Conread position:86-383
               
               
               Cow position:chr8:59766778-59766488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):36, 44

               
               
               Conread position:86-384
               
               
               Cow position:chr8:29765452-29765143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):63, 97

               
               
               Conread position:86-384
               
               
               Cow position:chr8:41626929-41627233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):67, 90

               
               
               Conread position:87-274
               
               
               Cow position:chr8:21324333-21324522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 106

               
               
               Conread position:88-383
               
               
               Cow position:chr8:10400479-10400192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):174, 24

               
               
               Conread position:89-383
               
               
               Cow position:chr8:35580455-35580748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 50

               
               
               Conread position:90-382
               
               
               Cow position:chr8:13661210-13660924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):57, 206

               
               
               Conread position:91-384
               
               
               Cow position:chr8:5177373-5177071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 104

               
               
               Conread position:92-378
               
               
               Cow position:chr8:9907297-9907010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):90, 84

               
               
               Conread position:95-381
               
               
               Cow position:chr8:9652842-9652566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):71, 47

               
               
               Conread position:95-384
               
               
               Cow position:chr8:11606507-11606221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:201
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):45, 187

               
               
               Conread position:96-384
               
               
               Cow position:chr8:45446928-45447215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):169, 56

               
               
               Conread position:98-384
               
               
               Cow position:chr8:58417859-58417586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:197
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 124

               
               
               Conread position:99-378
               
               
               Cow position:chr8:37882515-37882239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):73, 53

               
               
               Conread position:112-384
               
               
               Cow position:chr8:4648729-4649001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):152, 40

               
               
               Conread position:126-257
               
               
               Cow position:chr8:61677312-61677187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:126-380
               
               
               Cow position:chr8:2931556-2931804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):124, 155

               
               
               Conread position:128-281
               
               
               Cow position:chr8:52229550-52229702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):137, 18

               
               
               Conread position:128-321
               
               
               Cow position:chr8:12799060-12798865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-325
               
               
               Cow position:chr8:50335384-50335577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-378
               
               
               Cow position:chr8:3922575-3922822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-378
               
               
               Cow position:chr8:50784878-50784621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 57

               
               
               Conread position:128-384
               
               
               Cow position:chr8:21382550-21382806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-384
               
               
               Cow position:chr8:28313579-28313835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:128-384
               
               
               Cow position:chr8:38682023-38681769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):19, 117

               
               
               Conread position:128-384
               
               
               Cow position:chr8:58876213-58875950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):87, 33

               
               
               Conread position:128-384
               
               
               Cow position:chr8:60463648-60463405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):136, 19

               
               
               Conread position:128-388
               
               
               Cow position:chr8:7149560-7149812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:129-279
               
               
               Cow position:chr8:33994386-33994234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:129-378
               
               
               Cow position:chr8:18557248-18557490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):37, 52

               
               
               Conread position:130-381
               
               
               Cow position:chr8:6484792-6485043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 29

               
               
               Conread position:130-384
               
               
               Cow position:chr8:2830177-2829924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 58

               
               
               Conread position:130-384
               
               
               Cow position:chr8:24202058-24201793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):135, 48

               
               
               Conread position:131-265
               
               
               Cow position:chr8:61556814-61556947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:131-282
               
               
               Cow position:chr8:43153550-43153702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:131-329
               
               
               Cow position:chr8:47500944-47500743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-331
               
               
               Cow position:chr8:45126096-45126298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:131-332
               
               
               Cow position:chr8:15569343-15569544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):133, 157

               
               
               Conread position:131-343
               
               
               Cow position:chr8:29958538-29958330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):132, 87

               
               
               Conread position:131-356
               
               
               Cow position:chr8:36672056-36671830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):99, 28

               
               
               Conread position:131-366
               
               
               Cow position:chr8:17167710-17167471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:183
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):133, 195

               
               
               Conread position:131-366
               
               
               Cow position:chr8:20157620-20157860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:131-369
               
               
               Cow position:chr8:55871553-55871800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:131-374
               
               
               Cow position:chr8:17232221-17232466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:131-378
               
               
               Cow position:chr8:48956082-48955833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):99, 49

               
               
               Conread position:131-379
               
               
               Cow position:chr8:57208337-57208583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):16, 32

               
               
               Conread position:131-380
               
               
               Cow position:chr8:20837259-20837015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):133, 24

               
               
               Conread position:131-383
               
               
               Cow position:chr8:50709198-50708940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:131-383
               
               
               Cow position:chr8:57389423-57389175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:131-384
               
               
               Cow position:chr8:6531555-6531303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):61, 156

               
               
               Conread position:131-384
               
               
               Cow position:chr8:28987839-28987592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:193
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):134, 197

               
               
               Conread position:131-384
               
               
               Cow position:chr8:39174102-39174359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:131-384
               
               
               Cow position:chr8:45287159-45287396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:131-384
               
               
               Cow position:chr8:54147804-54147551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):128, 21

               
               
               Conread position:131-385
               
               
               Cow position:chr8:26386072-26386333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):27, 116

               
               
               Conread position:131-386
               
               
               Cow position:chr8:50937919-50937668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):10, 58

               
               
               Conread position:131-390
               
               
               Cow position:chr8:14383051-14383309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:132-348
               
               
               Cow position:chr8:49659266-49659053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):39, 33

               
               
               Conread position:132-348
               
               
               Cow position:chr8:60485347-60485131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):111, 158

               
               
               Conread position:132-368
               
               
               Cow position:chr8:49687080-49687316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):10, 34

               
               
               Conread position:132-378
               
               
               Cow position:chr8:47461998-47461762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:132-379
               
               
               Cow position:chr8:19011656-19011903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):132, 153

               
               
               Conread position:132-383
               
               
               Cow position:chr8:20073041-20073295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):132, 194

               
               
               Conread position:132-384
               
               
               Cow position:chr8:40888063-40888312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 12

               
               
               Conread position:132-384
               
               
               Cow position:chr8:53214185-53214439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):12, 33

               
               
               Conread position:133-345
               
               
               Cow position:chr8:25133711-25133500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):131, 109

               
               
               Conread position:133-348
               
               
               Cow position:chr8:15857112-15856893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:133-376
               
               
               Cow position:chr8:13374681-13374441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):130, 19

               
               
               Conread position:133-383
               
               
               Cow position:chr8:1394370-1394116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):36, 25

               
               
               Conread position:133-384
               
               
               Cow position:chr8:21077720-21077477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):38, 8

               
               
               Conread position:134-368
               
               
               Cow position:chr8:40579278-40579509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):130, 17

               
               
               Conread position:134-434
               
               
               Cow position:chr8:34042588-34042292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):129, 19

               
               
               Conread position:135-384
               
               
               Cow position:chr8:8577965-8577724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):130, 142

               
               
               Conread position:135-384
               
               
               Cow position:chr8:32094009-32093765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):136, 87

               
               
               Conread position:136-378
               
               
               Cow position:chr8:20339408-20339181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):128, 16

               
               
               Conread position:136-381
               
               
               Cow position:chr8:33974694-33974450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):11, 77

               
               
               Conread position:136-384
               
               
               Cow position:chr8:4940186-4940423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):238, 25

               
               
               Conread position:136-384
               
               
               Cow position:chr8:45127570-45127812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:136-384
               
               
               Cow position:chr8:47664773-47665018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):167, 27

               
               
               Conread position:137-384
               
               
               Cow position:chr8:4924702-4924455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 97

               
               
               Conread position:138-384
               
               
               Cow position:chr8:6076420-6076658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 67

               
               
               Conread position:141-352
               
               
               Cow position:chr8:20657232-20657444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):123, 144

               
               
               Conread position:141-382
               
               
               Cow position:chr8:35991182-35990939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):11, 212

               
               
               Conread position:141-384
               
               
               Cow position:chr8:45831009-45830777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):215, 69

               
               
               Conread position:143-384
               
               
               Cow position:chr8:18207015-18207247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):124, 79

               
               
               Conread position:146-272
               
               
               Cow position:chr8:5884566-5884693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:146-384
               
               
               Cow position:chr8:1012102-1011867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 7

               
               
               Conread position:146-384
               
               
               Cow position:chr8:33432384-33432143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):100, 76

               
               
               Conread position:147-331
               
               
               Cow position:chr8:25751750-25751932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):117, 74

               
               
               Conread position:147-383
               
               
               Cow position:chr8:43027533-43027768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):122, 33

               
               
               Conread position:147-384
               
               
               Cow position:chr8:11078983-11078756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):117, 43

               
               
               Conread position:147-384
               
               
               Cow position:chr8:37862695-37862465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):117, 92

               
               
               Conread position:147-384
               
               
               Cow position:chr8:43167904-43168139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):96, 151

               
               
               Conread position:148-384
               
               
               Cow position:chr8:24390073-24390312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:148-384
               
               
               Cow position:chr8:29026514-29026749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):116, 152

               
               
               Conread position:149-366
               
               
               Cow position:chr8:26304269-26304484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):115, 128

               
               
               Conread position:151-378
               
               
               Cow position:chr8:53558489-53558713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):52, 83

               
               
               Conread position:151-384
               
               
               Cow position:chr8:37192484-37192256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):112, 134

               
               
               Conread position:152-382
               
               
               Cow position:chr8:16507671-16507899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):21, 65

               
               
               Conread position:152-384
               
               
               Cow position:chr8:669446-669683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:152-384
               
               
               Cow position:chr8:2163787-2164016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 18

               
               
               Conread position:152-384
               
               
               Cow position:chr8:16031460-16031687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):112, 133

               
               
               Conread position:152-384
               
               
               Cow position:chr8:18057865-18057638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):158, 115

               
               
               Conread position:152-384
               
               
               Cow position:chr8:53362738-53362960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):120, 93

               
               
               Conread position:153-384
               
               
               Cow position:chr8:29624851-29625075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):111, 89

               
               
               Conread position:153-385
               
               
               Cow position:chr8:39630890-39630660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):125, 69

               
               
               Conread position:154-320
               
               
               Cow position:chr8:44557923-44558091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):110, 57

               
               
               Conread position:155-384
               
               
               Cow position:chr8:9130812-9131041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):145, 120

               
               
               Conread position:155-384
               
               
               Cow position:chr8:9705717-9705491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):109, 122

               
               
               Conread position:155-384
               
               
               Cow position:chr8:55305197-55304967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 20

               
               
               Conread position:156-335
               
               
               Cow position:chr8:1843018-1843190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):108, 127

               
               
               Conread position:156-354
               
               
               Cow position:chr8:35523501-35523700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):108, 164

               
               
               Conread position:156-384
               
               
               Cow position:chr8:10263050-10263276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):108, 132

               
               
               Conread position:157-385
               
               
               Cow position:chr8:37123079-37122859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):148, 107

               
               
               Conread position:161-384
               
               
               Cow position:chr8:5980052-5979828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):103, 40

               
               
               Conread position:161-384
               
               
               Cow position:chr8:17103317-17103533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):103, 86

               
               
               Conread position:164-384
               
               
               Cow position:chr8:554078-554299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:165-383
               
               
               Cow position:chr8:32988847-32988631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):98, 111

               
               
               Conread position:168-382
               
               
               Cow position:chr8:5224942-5225149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):96, 64

               
               
               Conread position:174-383
               
               
               Cow position:chr8:20684069-20683857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:174-384
               
               
               Cow position:chr8:3704720-3704506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:176-368
               
               
               Cow position:chr8:11783080-11782884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):74, 143

               
               
               Conread position:178-355
               
               
               Cow position:chr8:53064628-53064456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:179-368
               
               
               Cow position:chr8:14947204-14947393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 120

               
               
               Conread position:179-384
               
               
               Cow position:chr8:22756112-22755905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):88, 43

               
               
               Conread position:180-384
               
               
               Cow position:chr8:3339170-3338972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):85, 43

               
               
               Conread position:180-384
               
               
               Cow position:chr8:34288014-34287817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):120, 7

               
               
               Conread position:181-384
               
               
               Cow position:chr8:40143761-40143968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 119

               
               
               Conread position:185-384
               
               
               Cow position:chr8:59043012-59043215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):61, 78

               
               
               Conread position:187-384
               
               
               Cow position:chr8:28294763-28294955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 98

               
               
               Conread position:187-384
               
               
               Cow position:chr8:35210849-35211036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):77, 33

               
               
               Conread position:187-384
               
               
               Cow position:chr8:43228057-43227859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):49, 58

               
               
               Conread position:187-384
               
               
               Cow position:chr8:57041746-57041931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):77, 101

               
               
               Conread position:189-384
               
               
               Cow position:chr8:37334254-37334059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):75, 100

               
               
               Conread position:190-382
               
               
               Cow position:chr8:10297656-10297846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):74, 95

               
               
               Conread position:191-378
               
               
               Cow position:chr8:9917963-9917773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:191-384
               
               
               Cow position:chr8:30892922-30893117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:192-382
               
               
               Cow position:chr8:13723488-13723298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):72, 93

               
               
               Conread position:192-384
               
               
               Cow position:chr8:2814703-2814509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):71, 84

               
               
               Conread position:193-365
               
               
               Cow position:chr8:1183139-1182969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):71, 98

               
               
               Conread position:194-366
               
               
               Cow position:chr8:34781425-34781252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 105

               
               
               Conread position:198-384
               
               
               Cow position:chr8:5867150-5866963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):66, 127

               
               
               Conread position:202-384
               
               
               Cow position:chr8:25579606-25579424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):60, 86

               
               
               Conread position:209-348
               
               
               Cow position:chr8:12814947-12814807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:218-378
               
               
               Cow position:chr8:225314-225473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):48, 67

               
               
               Conread position:221-384
               
               
               Cow position:chr8:39721719-39721552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:223-379
               
               
               Cow position:chr8:32967836-32967679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 66

               
               
               Conread position:237-384
               
               
               Cow position:chr8:17669703-17669852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:249-380
               
               
               Cow position:chr8:46616432-46616304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):56, 17

               
               
               Conread position:1-235
               
               
               Cow position:chr9:6205574-6205337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 22

               
               
               Conread position:1-247
               
               
               Cow position:chr9:36624158-36623907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):65, 26

               
               
               Conread position:1-274
               
               
               Cow position:chr9:55495219-55494942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:179
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):61, 187

               
               
               Conread position:1-378
               
               
               Cow position:chr9:21030078-21030455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:258
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):133, 41

               
               
               Conread position:1-378
               
               
               Cow position:chr9:31215852-31216231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):193, 49

               
               
               Conread position:1-384
               
               
               Cow position:chr9:15983300-15982929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:257
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):153, 23

               
               
               Conread position:1-384
               
               
               Cow position:chr9:16811885-16811507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):20, 57

               
               
               Conread position:2-225
               
               
               Cow position:chr9:64140791-64140565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):149, 63

               
               
               Conread position:2-249
               
               
               Cow position:chr9:41470337-41470080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):25, 193

               
               
               Conread position:2-366
               
               
               Cow position:chr9:25965065-25964696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:253
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):138, 18

               
               
               Conread position:3-255
               
               
               Cow position:chr9:24079079-24079326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:3-285
               
               
               Cow position:chr9:8992403-8992124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):169, 47

               
               
               Conread position:3-352
               
               
               Cow position:chr9:33411799-33411456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 63

               
               
               Conread position:3-384
               
               
               Cow position:chr9:31346717-31347107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:266
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):34, 76

               
               
               Conread position:3-384
               
               
               Cow position:chr9:41416106-41416507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:272
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):141, 27

               
               
               Conread position:6-368
               
               
               Cow position:chr9:48730210-48730564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):131, 21

               
               
               Conread position:6-378
               
               
               Cow position:chr9:4263310-4262946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:7-273
               
               
               Cow position:chr9:4181769-4181506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):146, 46

               
               
               Conread position:7-343
               
               
               Cow position:chr9:20755977-20755644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):137, 15

               
               
               Conread position:9-319
               
               
               Cow position:chr9:34024479-34024789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 11

               
               
               Conread position:10-249
               
               
               Cow position:chr9:48808923-48809156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:12-216
               
               
               Cow position:chr9:6237707-6237508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:17-248
               
               
               Cow position:chr9:40221396-40221169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):169, 47

               
               
               Conread position:17-384
               
               
               Cow position:chr9:47500414-47500054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):47, 128

               
               
               Conread position:19-230
               
               
               Cow position:chr9:11448017-11447809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):118, 12

               
               
               Conread position:20-317
               
               
               Cow position:chr9:12398386-12398685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):133, 44

               
               
               Conread position:20-386
               
               
               Cow position:chr9:9724088-9723729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):126, 10

               
               
               Conread position:21-384
               
               
               Cow position:chr9:53762491-53762850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 43

               
               
               Conread position:23-238
               
               
               Cow position:chr9:28722493-28722711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 165

               
               
               Conread position:25-249
               
               
               Cow position:chr9:55807428-55807649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):37, 117

               
               
               Conread position:26-235
               
               
               Cow position:chr9:27686377-27686589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):22, 54

               
               
               Conread position:26-252
               
               
               Cow position:chr9:41644956-41644729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):118, 38

               
               
               Conread position:26-256
               
               
               Cow position:chr9:26394556-26394325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):37, 123

               
               
               Conread position:26-348
               
               
               Cow position:chr9:38941650-38941315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):24, 5

               
               
               Conread position:26-384
               
               
               Cow position:chr9:4512275-4512640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:242
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):58, 27

               
               
               Conread position:26-384
               
               
               Cow position:chr9:6338591-6338951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:246
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):103, 27

               
               
               Conread position:26-385
               
               
               Cow position:chr9:41728056-41728411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 119

               
               
               Conread position:27-355
               
               
               Cow position:chr9:1878198-1877884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):237, 24

               
               
               Conread position:27-367
               
               
               Cow position:chr9:34697506-34697170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):34, 9

               
               
               Conread position:28-248
               
               
               Cow position:chr9:35295492-35295707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:28-258
               
               
               Cow position:chr9:2397607-2397834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 100

               
               
               Conread position:28-330
               
               
               Cow position:chr9:6954452-6954148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):118, 9

               
               
               Conread position:28-352
               
               
               Cow position:chr9:9311657-9311980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):20, 37

               
               
               Conread position:28-367
               
               
               Cow position:chr9:44396457-44396795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):122, 162

               
               
               Conread position:28-378
               
               
               Cow position:chr9:61544461-61544795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 76

               
               
               Conread position:29-220
               
               
               Cow position:chr9:35933014-35932825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:29-240
               
               
               Cow position:chr9:16216777-16216990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):135, 146

               
               
               Conread position:29-252
               
               
               Cow position:chr9:13993564-13993786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):7, 25

               
               
               Conread position:29-272
               
               
               Cow position:chr9:58132147-58131911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:186
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):235, 22

               
               
               Conread position:29-340
               
               
               Cow position:chr9:52755052-52754748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:204
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):120, 35

               
               
               Conread position:29-378
               
               
               Cow position:chr9:52485113-52484774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):228, 111

               
               
               Conread position:29-382
               
               
               Cow position:chr9:30402633-30402269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):21, 152

               
               
               Conread position:29-383
               
               
               Cow position:chr9:10144683-10144325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:256
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):13, 54

               
               
               Conread position:30-252
               
               
               Cow position:chr9:45483905-45484132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 149

               
               
               Conread position:30-342
               
               
               Cow position:chr9:17677312-17677003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):132, 41

               
               
               Conread position:30-348
               
               
               Cow position:chr9:19902888-19903196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):19, 83

               
               
               Conread position:30-383
               
               
               Cow position:chr9:22318163-22318498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):205, 23

               
               
               Conread position:30-384
               
               
               Cow position:chr9:42061895-42062265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:243
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):81, 23

               
               
               Conread position:31-247
               
               
               Cow position:chr9:32662235-32662015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):125, 158

               
               
               Conread position:31-282
               
               
               Cow position:chr9:13945405-13945658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:31-282
               
               
               Cow position:chr9:30012674-30012925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):115, 22

               
               
               Conread position:31-345
               
               
               Cow position:chr9:45444960-45445278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):115, 281

               
               
               Conread position:31-375
               
               
               Cow position:chr9:10906018-10905672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):157, 34

               
               
               Conread position:31-378
               
               
               Cow position:chr9:20681596-20681259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):233, 19

               
               
               Conread position:32-272
               
               
               Cow position:chr9:56827277-56827523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):55, 39

               
               
               Conread position:32-273
               
               
               Cow position:chr9:52689811-52689568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):122, 33

               
               
               Conread position:32-368
               
               
               Cow position:chr9:26279371-26279035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 248

               
               
               Conread position:32-383
               
               
               Cow position:chr9:61457425-61457779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):115, 155

               
               
               Conread position:33-243
               
               
               Cow position:chr9:11380842-11380634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:33-252
               
               
               Cow position:chr9:1884337-1884109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):93, 20

               
               
               Conread position:33-299
               
               
               Cow position:chr9:2037245-2037497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):94, 23

               
               
               Conread position:33-316
               
               
               Cow position:chr9:9686614-9686329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):83, 31

               
               
               Conread position:33-332
               
               
               Cow position:chr9:35729229-35728928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):104, 31

               
               
               Conread position:33-377
               
               
               Cow position:chr9:62724350-62724682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:233
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):103, 17

               
               
               Conread position:33-382
               
               
               Cow position:chr9:19067565-19067928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:268
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):18, 170

               
               
               Conread position:33-383
               
               
               Cow position:chr9:5327064-5327407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:235
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):27, 99

               
               
               Conread position:33-384
               
               
               Cow position:chr9:43207573-43207224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:33-384
               
               
               Cow position:chr9:58448322-58447970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):123, 31

               
               
               Conread position:33-384
               
               
               Cow position:chr9:64105704-64106060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:252
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):19, 115

               
               
               Conread position:34-271
               
               
               Cow position:chr9:23971088-23970855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):177, 18

               
               
               Conread position:34-285
               
               
               Cow position:chr9:47517002-47517253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):119, 30

               
               
               Conread position:34-332
               
               
               Cow position:chr9:58452261-58451979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):230, 17

               
               
               Conread position:34-346
               
               
               Cow position:chr9:50310958-50310659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):101, 22

               
               
               Conread position:34-384
               
               
               Cow position:chr9:43757344-43757690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 62

               
               
               Conread position:35-216
               
               
               Cow position:chr9:13722332-13722153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):109, 17

               
               
               Conread position:35-225
               
               
               Cow position:chr9:20828708-20828900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):29, 55

               
               
               Conread position:35-271
               
               
               Cow position:chr9:44822516-44822283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):229, 29

               
               
               Conread position:37-297
               
               
               Cow position:chr9:34279256-34278995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):12, 127

               
               
               Conread position:37-360
               
               
               Cow position:chr9:16120982-16121300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):214, 16

               
               
               Conread position:37-378
               
               
               Cow position:chr9:44389190-44388863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:37-384
               
               
               Cow position:chr9:8998162-8998509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):138, 16

               
               
               Conread position:38-224
               
               
               Cow position:chr9:9494964-9495149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:38-233
               
               
               Cow position:chr9:55013534-55013330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):12, 185

               
               
               Conread position:38-338
               
               
               Cow position:chr9:49863748-49863444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):88, 139

               
               
               Conread position:38-368
               
               
               Cow position:chr9:11968995-11969324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):131, 26

               
               
               Conread position:38-378
               
               
               Cow position:chr9:49373992-49374333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:39-346
               
               
               Cow position:chr9:50125789-50125479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:39-373
               
               
               Cow position:chr9:3573275-3573611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):101, 14

               
               
               Conread position:39-379
               
               
               Cow position:chr9:14975122-14974783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):23, 150

               
               
               Conread position:39-384
               
               
               Cow position:chr9:50202363-50202722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):100, 273

               
               
               Conread position:40-236
               
               
               Cow position:chr9:61301168-61300972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):26, 103

               
               
               Conread position:40-303
               
               
               Cow position:chr9:32388176-32387912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):24, 137

               
               
               Conread position:40-373
               
               
               Cow position:chr9:52130822-52131159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):99, 143

               
               
               Conread position:40-384
               
               
               Cow position:chr9:22152272-22151930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):224, 88

               
               
               Conread position:41-220
               
               
               Cow position:chr9:14519566-14519391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):20, 98

               
               
               Conread position:43-321
               
               
               Cow position:chr9:17277078-17276801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):85, 21

               
               
               Conread position:43-378
               
               
               Cow position:chr9:58614310-58614630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):54, 98

               
               
               Conread position:43-384
               
               
               Cow position:chr9:56088264-56087915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:44-345
               
               
               Cow position:chr9:54411351-54411036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:44-371
               
               
               Cow position:chr9:32815466-32815781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):91, 114

               
               
               Conread position:44-383
               
               
               Cow position:chr9:11123667-11123331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):18, 94

               
               
               Conread position:45-332
               
               
               Cow position:chr9:35547081-35547372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):101, 19

               
               
               Conread position:45-383
               
               
               Cow position:chr9:27355733-27356072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):104, 149

               
               
               Conread position:45-383
               
               
               Cow position:chr9:27358519-27358858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):104, 149

               
               
               Conread position:46-249
               
               
               Cow position:chr9:62631852-62631653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 95

               
               
               Conread position:46-378
               
               
               Cow position:chr9:22637915-22638247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):108, 140

               
               
               Conread position:46-384
               
               
               Cow position:chr9:8901411-8901070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):103, 7

               
               
               Conread position:46-384
               
               
               Cow position:chr9:55795574-55795909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):216, 151

               
               
               Conread position:46-385
               
               
               Cow position:chr9:28917667-28917325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):108, 7

               
               
               Conread position:47-271
               
               
               Cow position:chr9:3924274-3924484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):138, 18

               
               
               Conread position:47-272
               
               
               Cow position:chr9:7806136-7805919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):217, 17

               
               
               Conread position:47-375
               
               
               Cow position:chr9:9551906-9552234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:233
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:47-378
               
               
               Cow position:chr9:12280791-12281114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):119, 17

               
               
               Conread position:47-382
               
               
               Cow position:chr9:27279123-27279460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 248

               
               
               Conread position:47-384
               
               
               Cow position:chr9:43623083-43623409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:233
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):100, 18

               
               
               Conread position:48-282
               
               
               Cow position:chr9:53390391-53390133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 49

               
               
               Conread position:48-326
               
               
               Cow position:chr9:35845203-35844918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):13, 132

               
               
               Conread position:48-331
               
               
               Cow position:chr9:53258237-53257952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):105, 16

               
               
               Conread position:48-378
               
               
               Cow position:chr9:34283773-34284094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):216, 30

               
               
               Conread position:48-378
               
               
               Cow position:chr9:43048798-43048482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):129, 16

               
               
               Conread position:48-378
               
               
               Cow position:chr9:47591165-47590838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):98, 16

               
               
               Conread position:48-378
               
               
               Cow position:chr9:52406990-52407313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):216, 5

               
               
               Conread position:48-382
               
               
               Cow position:chr9:11168565-11168881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):216, 5

               
               
               Conread position:48-384
               
               
               Cow position:chr9:20090876-20091194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 45

               
               
               Conread position:48-384
               
               
               Cow position:chr9:26403612-26403938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):18, 80

               
               
               Conread position:48-384
               
               
               Cow position:chr9:26477032-26477369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):94, 5

               
               
               Conread position:49-235
               
               
               Cow position:chr9:31694218-31694027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 24

               
               
               Conread position:49-268
               
               
               Cow position:chr9:35832795-35832582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:49-272
               
               
               Cow position:chr9:5110675-5110900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):105, 128

               
               
               Conread position:49-315
               
               
               Cow position:chr9:33838489-33838227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):210, 91

               
               
               Conread position:49-345
               
               
               Cow position:chr9:13993977-13994285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):15, 142

               
               
               Conread position:49-352
               
               
               Cow position:chr9:6951930-6952227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:49-368
               
               
               Cow position:chr9:40005296-40005612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):120, 48

               
               
               Conread position:49-382
               
               
               Cow position:chr9:38792834-38793164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 94

               
               
               Conread position:49-384
               
               
               Cow position:chr9:17799455-17799782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):161, 16

               
               
               Conread position:49-384
               
               
               Cow position:chr9:34286615-34286953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 306

               
               
               Conread position:49-384
               
               
               Cow position:chr9:48627840-48628180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 110

               
               
               Conread position:50-180
               
               
               Cow position:chr9:18716278-18716406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:50-220
               
               
               Cow position:chr9:53323967-53323795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:50-228
               
               
               Cow position:chr9:19657153-19656979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):121, 14

               
               
               Conread position:50-229
               
               
               Cow position:chr9:21816351-21816531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):174, 95

               
               
               Conread position:50-231
               
               
               Cow position:chr9:26388036-26388208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:50-233
               
               
               Cow position:chr9:44918459-44918279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 83

               
               
               Conread position:50-234
               
               
               Cow position:chr9:5172716-5172530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:50-241
               
               
               Cow position:chr9:17785749-17785556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 140

               
               
               Conread position:50-244
               
               
               Cow position:chr9:8592610-8592411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:50-248
               
               
               Cow position:chr9:5068657-5068858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:50-249
               
               
               Cow position:chr9:8613392-8613193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):97, 14

               
               
               Conread position:50-249
               
               
               Cow position:chr9:36401840-36401647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:50-252
               
               
               Cow position:chr9:11950213-11950009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):97, 137

               
               
               Conread position:50-255
               
               
               Cow position:chr9:43679939-43680144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:50-258
               
               
               Cow position:chr9:59897416-59897616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:50-265
               
               
               Cow position:chr9:35306529-35306312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):77, 36

               
               
               Conread position:50-268
               
               
               Cow position:chr9:42586729-42586519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):11, 78

               
               
               Conread position:50-271
               
               
               Cow position:chr9:33347662-33347449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):19, 72

               
               
               Conread position:50-274
               
               
               Cow position:chr9:14738073-14738293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):114, 14

               
               
               Conread position:50-283
               
               
               Cow position:chr9:59699732-59699494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):78, 43

               
               
               Conread position:50-308
               
               
               Cow position:chr9:19771180-19771443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):37, 50

               
               
               Conread position:50-309
               
               
               Cow position:chr9:61351525-61351261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):46, 241

               
               
               Conread position:50-317
               
               
               Cow position:chr9:50382499-50382239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 65

               
               
               Conread position:50-324
               
               
               Cow position:chr9:8834311-8834037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):104, 82

               
               
               Conread position:50-332
               
               
               Cow position:chr9:28263337-28263618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):81, 20

               
               
               Conread position:50-367
               
               
               Cow position:chr9:13744115-13743797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):11, 139

               
               
               Conread position:50-368
               
               
               Cow position:chr9:6189542-6189235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):136, 7

               
               
               Conread position:50-368
               
               
               Cow position:chr9:38624804-38624493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):100, 33

               
               
               Conread position:50-378
               
               
               Cow position:chr9:5456352-5456031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):116, 92

               
               
               Conread position:50-378
               
               
               Cow position:chr9:6934262-6933928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):19, 181

               
               
               Conread position:50-378
               
               
               Cow position:chr9:35028347-35028022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):96, 136

               
               
               Conread position:50-380
               
               
               Cow position:chr9:20579768-20579457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):253, 90

               
               
               Conread position:50-380
               
               
               Cow position:chr9:32670125-32669799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:50-381
               
               
               Cow position:chr9:7952720-7953049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):16, 44

               
               
               Conread position:50-382
               
               
               Cow position:chr9:18380687-18381010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 92

               
               
               Conread position:50-382
               
               
               Cow position:chr9:29824837-29825187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):77, 26

               
               
               Conread position:50-383
               
               
               Cow position:chr9:5500684-5501009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 51

               
               
               Conread position:50-383
               
               
               Cow position:chr9:6397965-6397629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):94, 14

               
               
               Conread position:50-383
               
               
               Cow position:chr9:8723611-8723945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):20, 106

               
               
               Conread position:50-383
               
               
               Cow position:chr9:9403351-9403024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 35

               
               
               Conread position:50-383
               
               
               Cow position:chr9:54681341-54681657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):225, 45

               
               
               Conread position:50-384
               
               
               Cow position:chr9:28747699-28747371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 98

               
               
               Conread position:50-384
               
               
               Cow position:chr9:30137943-30138281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):142, 79

               
               
               Conread position:50-384
               
               
               Cow position:chr9:33219139-33218799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):13, 170

               
               
               Conread position:50-384
               
               
               Cow position:chr9:40215068-40215396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):114, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr9:40303314-40302976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):197, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr9:44709654-44709978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):122, 14

               
               
               Conread position:50-384
               
               
               Cow position:chr9:48563898-48564235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):107, 135

               
               
               Conread position:50-384
               
               
               Cow position:chr9:51721070-51720749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:50-384
               
               
               Cow position:chr9:52638349-52638007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:228
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):97, 14

               
               
               Conread position:50-392
               
               
               Cow position:chr9:1867291-1867609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):253, 41

               
               
               Conread position:51-238
               
               
               Cow position:chr9:24748496-24748686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 136

               
               
               Conread position:51-249
               
               
               Cow position:chr9:36634323-36634526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:51-299
               
               
               Cow position:chr9:62144872-62145129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):98, 139

               
               
               Conread position:51-378
               
               
               Cow position:chr9:33940418-33940751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):99, 28

               
               
               Conread position:51-384
               
               
               Cow position:chr9:6192636-6192310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 93

               
               
               Conread position:51-384
               
               
               Cow position:chr9:12910579-12910249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 90

               
               
               Conread position:51-384
               
               
               Cow position:chr9:20847763-20848084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:237
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:51-384
               
               
               Cow position:chr9:25804648-25804987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):22, 241

               
               
               Conread position:52-219
               
               
               Cow position:chr9:1917804-1917967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:52-220
               
               
               Cow position:chr9:60741362-60741195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):13, 76

               
               
               Conread position:52-255
               
               
               Cow position:chr9:23840585-23840370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:52-255
               
               
               Cow position:chr9:34917355-34917163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):140, 75

               
               
               Conread position:52-265
               
               
               Cow position:chr9:18226928-18226701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:52-290
               
               
               Cow position:chr9:52763930-52763699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):207, 12

               
               
               Conread position:52-348
               
               
               Cow position:chr9:33584863-33584566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 96

               
               
               Conread position:52-384
               
               
               Cow position:chr9:5433467-5433791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):212, 70

               
               
               Conread position:52-384
               
               
               Cow position:chr9:10118844-10118512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:229
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):75, 110

               
               
               Conread position:53-220
               
               
               Cow position:chr9:12268856-12269019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:53-238
               
               
               Cow position:chr9:6929972-6929784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 78

               
               
               Conread position:53-238
               
               
               Cow position:chr9:34423441-34423629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):93, 118

               
               
               Conread position:53-248
               
               
               Cow position:chr9:32052099-32052293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:156
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):56, 94

               
               
               Conread position:53-249
               
               
               Cow position:chr9:151689-151886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):99, 141

               
               
               Conread position:53-252
               
               
               Cow position:chr9:36457819-36458020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:53-257
               
               
               Cow position:chr9:12129130-12129333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):8, 139

               
               
               Conread position:53-262
               
               
               Cow position:chr9:22447471-22447263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:53-272
               
               
               Cow position:chr9:21292587-21292365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 102

               
               
               Conread position:53-272
               
               
               Cow position:chr9:22440650-22440440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):212, 88

               
               
               Conread position:53-274
               
               
               Cow position:chr9:28156523-28156737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):96, 115

               
               
               Conread position:53-274
               
               
               Cow position:chr9:36627945-36628162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):211, 75

               
               
               Conread position:53-288
               
               
               Cow position:chr9:57131321-57131554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 41

               
               
               Conread position:53-325
               
               
               Cow position:chr9:8629089-8628822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):211, 88

               
               
               Conread position:53-334
               
               
               Cow position:chr9:9459812-9460078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:213
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):166, 79

               
               
               Conread position:53-365
               
               
               Cow position:chr9:8636501-8636803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 41

               
               
               Conread position:53-373
               
               
               Cow position:chr9:60080715-60081047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):13, 130

               
               
               Conread position:53-380
               
               
               Cow position:chr9:5263327-5263649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 41

               
               
               Conread position:53-380
               
               
               Cow position:chr9:6839815-6840150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:217
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):101, 30

               
               
               Conread position:53-382
               
               
               Cow position:chr9:4341333-4341019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:53-382
               
               
               Cow position:chr9:9573143-9573483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):97, 136

               
               
               Conread position:53-382
               
               
               Cow position:chr9:51620267-51620588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 75

               
               
               Conread position:53-383
               
               
               Cow position:chr9:9516926-9516617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):8, 72

               
               
               Conread position:53-384
               
               
               Cow position:chr9:3378585-3378897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):209, 74

               
               
               Conread position:53-384
               
               
               Cow position:chr9:9443779-9443444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):75, 33

               
               
               Conread position:53-384
               
               
               Cow position:chr9:13670460-13670785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:239
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):193, 20

               
               
               Conread position:53-384
               
               
               Cow position:chr9:18253098-18252770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):10, 139

               
               
               Conread position:53-384
               
               
               Cow position:chr9:63785085-63784774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):111, 12

               
               
               Conread position:54-244
               
               
               Cow position:chr9:32806305-32806116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):105, 121

               
               
               Conread position:54-257
               
               
               Cow position:chr9:57642337-57642531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):160, 40

               
               
               Conread position:54-282
               
               
               Cow position:chr9:5104586-5104351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:181
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):80, 165

               
               
               Conread position:54-295
               
               
               Cow position:chr9:47214724-47214480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):63, 12

               
               
               Conread position:54-355
               
               
               Cow position:chr9:5342422-5342129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):210, 91

               
               
               Conread position:54-384
               
               
               Cow position:chr9:6852227-6851915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):213, 34

               
               
               Conread position:54-384
               
               
               Cow position:chr9:9596126-9595802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 72

               
               
               Conread position:54-384
               
               
               Cow position:chr9:11299849-11299538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 91

               
               
               Conread position:54-384
               
               
               Cow position:chr9:34375103-34374779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 221

               
               
               Conread position:54-384
               
               
               Cow position:chr9:36491080-36490739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:54-384
               
               
               Cow position:chr9:45141772-45141450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 74

               
               
               Conread position:54-384
               
               
               Cow position:chr9:58979229-58979550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):60, 74

               
               
               Conread position:55-234
               
               
               Cow position:chr9:34666277-34666444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:55-249
               
               
               Cow position:chr9:40984329-40984523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-272
               
               
               Cow position:chr9:12786650-12786431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):82, 169

               
               
               Conread position:56-353
               
               
               Cow position:chr9:41785047-41785342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):208, 70

               
               
               Conread position:56-384
               
               
               Cow position:chr9:31640501-31640169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):100, 32

               
               
               Conread position:56-396
               
               
               Cow position:chr9:52513640-52513287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:239
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):81, 257

               
               
               Conread position:56-442
               
               
               Cow position:chr9:39011641-39011271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 35

               
               
               Conread position:57-213
               
               
               Cow position:chr9:30194838-30194993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):102, 82

               
               
               Conread position:57-220
               
               
               Cow position:chr9:55284514-55284355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:57-235
               
               
               Cow position:chr9:33101278-33101111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:57-238
               
               
               Cow position:chr9:49679937-49680121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):91, 131

               
               
               Conread position:57-248
               
               
               Cow position:chr9:5357848-5358028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:57-260
               
               
               Cow position:chr9:9358384-9358181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):36, 137

               
               
               Conread position:57-260
               
               
               Cow position:chr9:42508655-42508861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):145, 85

               
               
               Conread position:57-265
               
               
               Cow position:chr9:54664675-54664887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 145

               
               
               Conread position:57-281
               
               
               Cow position:chr9:52518994-52518772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):65, 89

               
               
               Conread position:57-282
               
               
               Cow position:chr9:4241234-4241458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):128, 83

               
               
               Conread position:57-282
               
               
               Cow position:chr9:37198954-37199179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 91

               
               
               Conread position:57-314
               
               
               Cow position:chr9:59998203-59997950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):205, 53

               
               
               Conread position:57-346
               
               
               Cow position:chr9:45728604-45728893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 80

               
               
               Conread position:57-348
               
               
               Cow position:chr9:647600-647893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):31, 120

               
               
               Conread position:57-367
               
               
               Cow position:chr9:41282839-41283149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 233

               
               
               Conread position:57-369
               
               
               Cow position:chr9:31359431-31359738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):18, 87

               
               
               Conread position:57-384
               
               
               Cow position:chr9:1751156-1751487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):65, 48

               
               
               Conread position:57-384
               
               
               Cow position:chr9:12428676-12428357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):87, 182

               
               
               Conread position:57-384
               
               
               Cow position:chr9:19034181-19034493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):87, 130

               
               
               Conread position:57-384
               
               
               Cow position:chr9:26345135-26344816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:57-384
               
               
               Cow position:chr9:28726902-28726568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 95

               
               
               Conread position:57-384
               
               
               Cow position:chr9:32307407-32307084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):90, 188

               
               
               Conread position:57-384
               
               
               Cow position:chr9:33114166-33114498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):86, 186

               
               
               Conread position:57-384
               
               
               Cow position:chr9:50607103-50606796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):207, 70

               
               
               Conread position:57-384
               
               
               Cow position:chr9:56453173-56453481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):299, 65

               
               
               Conread position:57-384
               
               
               Cow position:chr9:59013511-59013181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):207, 89

               
               
               Conread position:57-384
               
               
               Cow position:chr9:61302830-61303156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 82

               
               
               Conread position:57-401
               
               
               Cow position:chr9:5227333-5227000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:239
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):207, 74

               
               
               Conread position:58-235
               
               
               Cow position:chr9:54677085-54677268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:58-273
               
               
               Cow position:chr9:11098623-11098413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):206, 80

               
               
               Conread position:58-275
               
               
               Cow position:chr9:12337728-12337947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):85, 71

               
               
               Conread position:58-282
               
               
               Cow position:chr9:33151577-33151794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):206, 70

               
               
               Conread position:58-321
               
               
               Cow position:chr9:26102560-26102813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):88, 111

               
               
               Conread position:58-327
               
               
               Cow position:chr9:17840851-17840579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 0

               
               
               Conread position:58-332
               
               
               Cow position:chr9:36453710-36453440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):113, 67

               
               
               Conread position:58-348
               
               
               Cow position:chr9:53109079-53109369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):92, 79

               
               
               Conread position:58-378
               
               
               Cow position:chr9:26440986-26440656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):85, 12

               
               
               Conread position:58-384
               
               
               Cow position:chr9:13169837-13169511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 105

               
               
               Conread position:58-384
               
               
               Cow position:chr9:19555217-19555526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):213, 57

               
               
               Conread position:58-384
               
               
               Cow position:chr9:25556811-25557118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):206, 88

               
               
               Conread position:58-384
               
               
               Cow position:chr9:36410522-36410203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):91, 124

               
               
               Conread position:58-384
               
               
               Cow position:chr9:55256721-55256398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 81

               
               
               Conread position:59-240
               
               
               Cow position:chr9:2026257-2026070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):74, 27

               
               
               Conread position:59-247
               
               
               Cow position:chr9:22309028-22309213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:59-251
               
               
               Cow position:chr9:1403707-1403515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):87, 11

               
               
               Conread position:59-252
               
               
               Cow position:chr9:34276384-34276189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):88, 128

               
               
               Conread position:59-255
               
               
               Cow position:chr9:31344781-31344583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):87, 128

               
               
               Conread position:59-256
               
               
               Cow position:chr9:19718505-19718315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:59-263
               
               
               Cow position:chr9:37951071-37950866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):88, 119

               
               
               Conread position:59-270
               
               
               Cow position:chr9:34484419-34484635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:59-274
               
               
               Cow position:chr9:48016818-48017025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):167, 68

               
               
               Conread position:59-332
               
               
               Cow position:chr9:8716956-8716668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 116

               
               
               Conread position:59-351
               
               
               Cow position:chr9:8547638-8547933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):85, 30

               
               
               Conread position:59-352
               
               
               Cow position:chr9:5900125-5899841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):106, 62

               
               
               Conread position:59-366
               
               
               Cow position:chr9:37934410-37934102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):89, 128

               
               
               Conread position:59-368
               
               
               Cow position:chr9:21460324-21460016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):72, 45

               
               
               Conread position:59-368
               
               
               Cow position:chr9:32676506-32676816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):79, 32

               
               
               Conread position:59-368
               
               
               Cow position:chr9:34410564-34410259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):42, 36

               
               
               Conread position:59-373
               
               
               Cow position:chr9:32348994-32348680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):32, 145

               
               
               Conread position:59-378
               
               
               Cow position:chr9:10650459-10650161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):112, 35

               
               
               Conread position:59-378
               
               
               Cow position:chr9:42264050-42264353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):160, 68

               
               
               Conread position:59-379
               
               
               Cow position:chr9:20815695-20816010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 102

               
               
               Conread position:59-383
               
               
               Cow position:chr9:20901289-20900971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):112, 68

               
               
               Conread position:59-383
               
               
               Cow position:chr9:33597802-33598133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):74, 230

               
               
               Conread position:59-384
               
               
               Cow position:chr9:20942790-20942456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):88, 128

               
               
               Conread position:59-384
               
               
               Cow position:chr9:24887034-24887352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 232

               
               
               Conread position:59-384
               
               
               Cow position:chr9:28772970-28773274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):246, 42

               
               
               Conread position:59-384
               
               
               Cow position:chr9:61022448-61022763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):9, 184

               
               
               Conread position:59-385
               
               
               Cow position:chr9:45285710-45285376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 294

               
               
               Conread position:60-241
               
               
               Cow position:chr9:28315254-28315439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):67, 129

               
               
               Conread position:60-249
               
               
               Cow position:chr9:9557513-9557704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):105, 81

               
               
               Conread position:60-249
               
               
               Cow position:chr9:52257630-52257445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):106, 64

               
               
               Conread position:60-252
               
               
               Cow position:chr9:5187030-5186846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:60-260
               
               
               Cow position:chr9:40603497-40603697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:60-268
               
               
               Cow position:chr9:12773524-12773726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:60-271
               
               
               Cow position:chr9:44584431-44584634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):203, 67

               
               
               Conread position:60-274
               
               
               Cow position:chr9:27345759-27345540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):75, 106

               
               
               Conread position:60-304
               
               
               Cow position:chr9:63361881-63361647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):204, 67

               
               
               Conread position:60-333
               
               
               Cow position:chr9:56032487-56032217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):68, 89

               
               
               Conread position:60-345
               
               
               Cow position:chr9:23956147-23955870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 89

               
               
               Conread position:60-366
               
               
               Cow position:chr9:51566668-51566360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):84, 258

               
               
               Conread position:60-379
               
               
               Cow position:chr9:15215860-15215541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):87, 118

               
               
               Conread position:60-383
               
               
               Cow position:chr9:15806096-15805773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):84, 126

               
               
               Conread position:60-384
               
               
               Cow position:chr9:52267932-52267604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:232
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):28, 37

               
               
               Conread position:61-247
               
               
               Cow position:chr9:61286592-61286778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):96, 90

               
               
               Conread position:61-290
               
               
               Cow position:chr9:44759096-44758874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):110, 66

               
               
               Conread position:61-378
               
               
               Cow position:chr9:61738751-61739064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 269

               
               
               Conread position:61-384
               
               
               Cow position:chr9:17872276-17871951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 80

               
               
               Conread position:61-384
               
               
               Cow position:chr9:53139304-53138978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):96, 128

               
               
               Conread position:61-384
               
               
               Cow position:chr9:60395218-60394898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 235

               
               
               Conread position:62-233
               
               
               Cow position:chr9:45740312-45740140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:62-247
               
               
               Cow position:chr9:61909216-61909404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):84, 126

               
               
               Conread position:62-384
               
               
               Cow position:chr9:16300742-16300413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):78, 30

               
               
               Conread position:64-232
               
               
               Cow position:chr9:11873461-11873303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:64-241
               
               
               Cow position:chr9:48901001-48900826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):100, 30

               
               
               Conread position:64-282
               
               
               Cow position:chr9:43159589-43159804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):182, 27

               
               
               Conread position:64-321
               
               
               Cow position:chr9:29819560-29819805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):200, 63

               
               
               Conread position:64-355
               
               
               Cow position:chr9:56065400-56065674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):202, 75

               
               
               Conread position:64-378
               
               
               Cow position:chr9:42497662-42497973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):192, 57

               
               
               Conread position:64-383
               
               
               Cow position:chr9:35167003-35167324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):60, 27

               
               
               Conread position:64-384
               
               
               Cow position:chr9:34689771-34689449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):63, 95

               
               
               Conread position:64-384
               
               
               Cow position:chr9:41679596-41679898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):206, 76

               
               
               Conread position:64-384
               
               
               Cow position:chr9:55117916-55118232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):65, 157

               
               
               Conread position:65-261
               
               
               Cow position:chr9:34707475-34707282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:65-287
               
               
               Cow position:chr9:49402483-49402708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):56, 81

               
               
               Conread position:65-310
               
               
               Cow position:chr9:33822952-33823200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):95, 24

               
               
               Conread position:65-384
               
               
               Cow position:chr9:23388845-23388525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):62, 153

               
               
               Conread position:66-247
               
               
               Cow position:chr9:26557801-26557984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:66-378
               
               
               Cow position:chr9:9753566-9753247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):78, 13

               
               
               Conread position:67-305
               
               
               Cow position:chr9:22289600-22289837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):95, 108

               
               
               Conread position:68-272
               
               
               Cow position:chr9:22165879-22165671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:68-378
               
               
               Cow position:chr9:3070579-3070274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):68, 196

               
               
               Conread position:68-384
               
               
               Cow position:chr9:5835988-5836312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):69, 18

               
               
               Conread position:68-384
               
               
               Cow position:chr9:30123768-30124073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 78

               
               
               Conread position:68-384
               
               
               Cow position:chr9:34958214-34957902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 77

               
               
               Conread position:69-368
               
               
               Cow position:chr9:22443784-22443491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):190, 70

               
               
               Conread position:69-373
               
               
               Cow position:chr9:1756312-1756003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):57, 110

               
               
               Conread position:69-384
               
               
               Cow position:chr9:8936987-8937297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):79, 111

               
               
               Conread position:69-384
               
               
               Cow position:chr9:9815252-9815568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):78, 23

               
               
               Conread position:70-366
               
               
               Cow position:chr9:38846501-38846209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):66, 163

               
               
               Conread position:70-383
               
               
               Cow position:chr9:29185300-29184981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):74, 108

               
               
               Conread position:71-282
               
               
               Cow position:chr9:64310938-64310728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):75, 152

               
               
               Conread position:71-297
               
               
               Cow position:chr9:32955853-32955616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):56, 41

               
               
               Conread position:72-249
               
               
               Cow position:chr9:52998536-52998362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:72-251
               
               
               Cow position:chr9:1712866-1712686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):55, 89

               
               
               Conread position:72-252
               
               
               Cow position:chr9:37955332-37955150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):72, 82

               
               
               Conread position:72-257
               
               
               Cow position:chr9:44944631-44944452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:72-329
               
               
               Cow position:chr9:25400345-25400099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):211, 55

               
               
               Conread position:72-342
               
               
               Cow position:chr9:21387272-21387533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):211, 64

               
               
               Conread position:72-348
               
               
               Cow position:chr9:21080415-21080679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):192, 19

               
               
               Conread position:72-377
               
               
               Cow position:chr9:39211453-39211752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):94, 54

               
               
               Conread position:72-378
               
               
               Cow position:chr9:12226143-12225837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):82, 113

               
               
               Conread position:72-379
               
               
               Cow position:chr9:10010654-10010949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):72, 105

               
               
               Conread position:72-384
               
               
               Cow position:chr9:26057587-26057287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):233, 23

               
               
               Conread position:72-384
               
               
               Cow position:chr9:52578696-52578384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:227
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):77, 29

               
               
               Conread position:73-378
               
               
               Cow position:chr9:3185972-3186274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):191, 68

               
               
               Conread position:74-241
               
               
               Cow position:chr9:14357256-14357425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):78, 113

               
               
               Conread position:74-247
               
               
               Cow position:chr9:32773066-32773229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:74-331
               
               
               Cow position:chr9:29195188-29194923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 218

               
               
               Conread position:74-349
               
               
               Cow position:chr9:54492982-54493255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:202
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):190, 65

               
               
               Conread position:74-355
               
               
               Cow position:chr9:29339468-29339201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):194, 42

               
               
               Conread position:74-381
               
               
               Cow position:chr9:62471521-62471818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):80, 102

               
               
               Conread position:74-383
               
               
               Cow position:chr9:56772905-56773231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:74-384
               
               
               Cow position:chr9:55288045-55287745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):65, 74

               
               
               Conread position:76-384
               
               
               Cow position:chr9:29006405-29006715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 83

               
               
               Conread position:77-332
               
               
               Cow position:chr9:31648061-31648318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):100, 39

               
               
               Conread position:78-378
               
               
               Cow position:chr9:44834118-44833820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):18, 98

               
               
               Conread position:79-272
               
               
               Cow position:chr9:20637224-20637415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):185, 48

               
               
               Conread position:80-352
               
               
               Cow position:chr9:46930310-46930579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):69, 9

               
               
               Conread position:80-378
               
               
               Cow position:chr9:24726818-24726533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):95, 63

               
               
               Conread position:83-317
               
               
               Cow position:chr9:33541905-33542142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 208

               
               
               Conread position:84-384
               
               
               Cow position:chr9:767295-767000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):60, 10

               
               
               Conread position:86-383
               
               
               Cow position:chr9:57897247-57896968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):178, 42

               
               
               Conread position:87-236
               
               
               Cow position:chr9:54630170-54630315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:88-264
               
               
               Cow position:chr9:43202193-43202367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:90-384
               
               
               Cow position:chr9:33120031-33119733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 200

               
               
               Conread position:91-384
               
               
               Cow position:chr9:20416653-20416362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):55, 148

               
               
               Conread position:91-384
               
               
               Cow position:chr9:52505448-52505154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):63, 85

               
               
               Conread position:92-282
               
               
               Cow position:chr9:22466639-22466824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):170, 50

               
               
               Conread position:92-384
               
               
               Cow position:chr9:26506976-26507278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 87

               
               
               Conread position:95-384
               
               
               Cow position:chr9:17741076-17740795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:95-384
               
               
               Cow position:chr9:44832183-44831902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):63, 7

               
               
               Conread position:102-384
               
               
               Cow position:chr9:51204594-51204873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:201
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):55, 7

               
               
               Conread position:105-376
               
               
               Cow position:chr9:6596350-6596090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):159, 37

               
               
               Conread position:105-383
               
               
               Cow position:chr9:48107236-48106966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):23, 74

               
               
               Conread position:107-329
               
               
               Cow position:chr9:44770323-44770100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):17, 109

               
               
               Conread position:107-396
               
               
               Cow position:chr9:41394773-41394491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):24, 49

               
               
               Conread position:109-384
               
               
               Cow position:chr9:823838-824113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):31, 54

               
               
               Conread position:112-300
               
               
               Cow position:chr9:49545483-49545298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):151, 124

               
               
               Conread position:119-384
               
               
               Cow position:chr9:46316891-46316633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):145, 24

               
               
               Conread position:126-385
               
               
               Cow position:chr9:50139180-50139439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):125, 174

               
               
               Conread position:127-384
               
               
               Cow position:chr9:64155953-64155707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):137, 17

               
               
               Conread position:128-309
               
               
               Cow position:chr9:53751061-53750877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:128-352
               
               
               Cow position:chr9:38645447-38645223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):176, 78

               
               
               Conread position:128-363
               
               
               Cow position:chr9:17411294-17411060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):134, 24

               
               
               Conread position:128-373
               
               
               Cow position:chr9:39681233-39681481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):17, 169

               
               
               Conread position:128-379
               
               
               Cow position:chr9:50081141-50080899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):134, 28

               
               
               Conread position:128-384
               
               
               Cow position:chr9:9461757-9461502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):110, 51

               
               
               Conread position:128-384
               
               
               Cow position:chr9:54528410-54528665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):8, 105

               
               
               Conread position:128-388
               
               
               Cow position:chr9:62668145-62668409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 41

               
               
               Conread position:128-394
               
               
               Cow position:chr9:36445513-36445794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:129-339
               
               
               Cow position:chr9:18828158-18827947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):17, 65

               
               
               Conread position:129-378
               
               
               Cow position:chr9:17310664-17310416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):9, 24

               
               
               Conread position:129-382
               
               
               Cow position:chr9:3782270-3782511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):245, 23

               
               
               Conread position:129-384
               
               
               Cow position:chr9:9406153-9405898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):132, 33

               
               
               Conread position:129-384
               
               
               Cow position:chr9:44467440-44467200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):79, 26

               
               
               Conread position:130-383
               
               
               Cow position:chr9:5245753-5246007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:130-384
               
               
               Cow position:chr9:61997704-61997446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):96, 64

               
               
               Conread position:131-255
               
               
               Cow position:chr9:26277731-26277852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:131-273
               
               
               Cow position:chr9:6293496-6293638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-282
               
               
               Cow position:chr9:16137440-16137290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):133, 25

               
               
               Conread position:131-295
               
               
               Cow position:chr9:39758418-39758583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:131-366
               
               
               Cow position:chr9:8534798-8534556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):16, 212

               
               
               Conread position:131-373
               
               
               Cow position:chr9:1520837-1520596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):80, 15

               
               
               Conread position:131-378
               
               
               Cow position:chr9:37677794-37678030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):40, 56

               
               
               Conread position:131-379
               
               
               Cow position:chr9:11313614-11313364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 158

               
               
               Conread position:131-382
               
               
               Cow position:chr9:9654407-9654161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):133, 91

               
               
               Conread position:131-384
               
               
               Cow position:chr9:1938026-1938282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:131-384
               
               
               Cow position:chr9:1972848-1973095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):135, 91

               
               
               Conread position:131-384
               
               
               Cow position:chr9:3738324-3738069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):139, 165

               
               
               Conread position:131-384
               
               
               Cow position:chr9:8288518-8288770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):136, 76

               
               
               Conread position:131-384
               
               
               Cow position:chr9:8562722-8562990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):133, 95

               
               
               Conread position:131-385
               
               
               Cow position:chr9:11319734-11319480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):133, 154

               
               
               Conread position:132-262
               
               
               Cow position:chr9:35793578-35793708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:132-278
               
               
               Cow position:chr9:55354514-55354659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):132, 12

               
               
               Conread position:132-282
               
               
               Cow position:chr9:19758620-19758771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:132-347
               
               
               Cow position:chr9:52598818-52598608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):131, 20

               
               
               Conread position:132-384
               
               
               Cow position:chr9:18342634-18342877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):133, 144

               
               
               Conread position:132-384
               
               
               Cow position:chr9:21888071-21888322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):38, 48

               
               
               Conread position:132-384
               
               
               Cow position:chr9:55084398-55084144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:132-384
               
               
               Cow position:chr9:64091582-64091837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):132, 37

               
               
               Conread position:132-385
               
               
               Cow position:chr9:18217196-18216950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:133-326
               
               
               Cow position:chr9:23797139-23797331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):131, 18

               
               
               Conread position:133-383
               
               
               Cow position:chr9:5594406-5594652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):130, 20

               
               
               Conread position:133-384
               
               
               Cow position:chr9:28354421-28354671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):102, 19

               
               
               Conread position:133-384
               
               
               Cow position:chr9:31079175-31078930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:190
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):134, 26

               
               
               Conread position:133-384
               
               
               Cow position:chr9:42446078-42445826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):131, 14

               
               
               Conread position:134-384
               
               
               Cow position:chr9:7634176-7634426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:186
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):130, 12

               
               
               Conread position:134-384
               
               
               Cow position:chr9:30652806-30652553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):32, 54

               
               
               Conread position:135-379
               
               
               Cow position:chr9:4646419-4646180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):116, 18

               
               
               Conread position:135-383
               
               
               Cow position:chr9:49293237-49292994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):129, 26

               
               
               Conread position:135-384
               
               
               Cow position:chr9:4268078-4267831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:185
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):129, 169

               
               
               Conread position:135-384
               
               
               Cow position:chr9:17518585-17518336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):132, 164

               
               
               Conread position:135-385
               
               
               Cow position:chr9:50543521-50543269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):72, 17

               
               
               Conread position:135-385
               
               
               Cow position:chr9:62442194-62442445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):131, 75

               
               
               Conread position:136-342
               
               
               Cow position:chr9:28378875-28379080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):146, 27

               
               
               Conread position:136-379
               
               
               Cow position:chr9:52839972-52839739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):128, 16

               
               
               Conread position:136-384
               
               
               Cow position:chr9:33696942-33697179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):128, 15

               
               
               Conread position:138-325
               
               
               Cow position:chr9:54615391-54615208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):126, 14

               
               
               Conread position:139-364
               
               
               Cow position:chr9:55075219-55075001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):124, 12

               
               
               Conread position:139-384
               
               
               Cow position:chr9:32371843-32371608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):128, 67

               
               
               Conread position:141-272
               
               
               Cow position:chr9:34014337-34014207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):123, 11

               
               
               Conread position:146-256
               
               
               Cow position:chr9:49830760-49830869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:146-354
               
               
               Cow position:chr9:3343664-3343865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):118, 155

               
               
               Conread position:146-373
               
               
               Cow position:chr9:10819913-10819691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):118, 97

               
               
               Conread position:146-377
               
               
               Cow position:chr9:35105875-35105645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:146-378
               
               
               Cow position:chr9:3220051-3220283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):118, 158

               
               
               Conread position:146-378
               
               
               Cow position:chr9:31814471-31814228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:146-379
               
               
               Cow position:chr9:5219257-5219021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:181
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):89, 144

               
               
               Conread position:146-384
               
               
               Cow position:chr9:5763715-5763481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):118, 23

               
               
               Conread position:146-384
               
               
               Cow position:chr9:19713995-19714228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):118, 139

               
               
               Conread position:146-384
               
               
               Cow position:chr9:43870890-43871132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:146-384
               
               
               Cow position:chr9:62357614-62357376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):10, 77

               
               
               Conread position:147-330
               
               
               Cow position:chr9:9625094-9624912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):117, 45

               
               
               Conread position:147-341
               
               
               Cow position:chr9:28754735-28754929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:147-368
               
               
               Cow position:chr9:11304159-11303945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):117, 85

               
               
               Conread position:147-379
               
               
               Cow position:chr9:43443720-43443943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:147-384
               
               
               Cow position:chr9:34468662-34468432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):25, 8

               
               
               Conread position:147-384
               
               
               Cow position:chr9:37069643-37069416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):53, 134

               
               
               Conread position:147-384
               
               
               Cow position:chr9:55321553-55321790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):117, 136

               
               
               Conread position:147-384
               
               
               Cow position:chr9:62656719-62656949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):66, 139

               
               
               Conread position:148-309
               
               
               Cow position:chr9:30780035-30780192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):116, 42

               
               
               Conread position:148-378
               
               
               Cow position:chr9:7362945-7363169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 32

               
               
               Conread position:148-384
               
               
               Cow position:chr9:45756280-45756510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):18, 27

               
               
               Conread position:149-368
               
               
               Cow position:chr9:15225378-15225162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):115, 136

               
               
               Conread position:150-307
               
               
               Cow position:chr9:56204729-56204884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):146, 72

               
               
               Conread position:151-366
               
               
               Cow position:chr9:58670663-58670866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):116, 19

               
               
               Conread position:151-384
               
               
               Cow position:chr9:23431227-23430993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):46, 77

               
               
               Conread position:151-384
               
               
               Cow position:chr9:60027117-60027350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):95, 99

               
               
               Conread position:152-340
               
               
               Cow position:chr9:32982154-32981963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):94, 135

               
               
               Conread position:152-343
               
               
               Cow position:chr9:26310426-26310620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:152-383
               
               
               Cow position:chr9:36843714-36843939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):85, 122

               
               
               Conread position:152-384
               
               
               Cow position:chr9:5509644-5509874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 30

               
               
               Conread position:153-293
               
               
               Cow position:chr9:6685821-6685963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:155-381
               
               
               Cow position:chr9:5209507-5209730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):115, 13

               
               
               Conread position:156-304
               
               
               Cow position:chr9:62908094-62907950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):107, 65

               
               
               Conread position:156-384
               
               
               Cow position:chr9:24872761-24872984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):108, 68

               
               
               Conread position:156-385
               
               
               Cow position:chr9:19493541-19493309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:158-377
               
               
               Cow position:chr9:29684071-29684293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):122, 103

               
               
               Conread position:161-384
               
               
               Cow position:chr9:49416918-49417140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):108, 13

               
               
               Conread position:165-368
               
               
               Cow position:chr9:41486308-41486104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):99, 13

               
               
               Conread position:168-412
               
               
               Cow position:chr9:43936882-43937120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):96, 118

               
               
               Conread position:174-380
               
               
               Cow position:chr9:17928700-17928908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):91, 108

               
               
               Conread position:174-384
               
               
               Cow position:chr9:24997574-24997368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):90, 31

               
               
               Conread position:179-368
               
               
               Cow position:chr9:43875771-43875577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:181-384
               
               
               Cow position:chr9:22114686-22114482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):5, 64

               
               
               Conread position:187-384
               
               
               Cow position:chr9:27029749-27029551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):73, 98

               
               
               Conread position:187-384
               
               
               Cow position:chr9:35904789-35904593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):73, 98

               
               
               Conread position:190-384
               
               
               Cow position:chr9:41789243-41789436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):76, 95

               
               
               Conread position:194-384
               
               
               Cow position:chr9:35375389-35375581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):70, 17

               
               
               Conread position:194-384
               
               
               Cow position:chr9:35849867-35850052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):77, 109

               
               
               Conread position:195-368
               
               
               Cow position:chr9:43013686-43013860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):69, 28

               
               
               Conread position:201-384
               
               
               Cow position:chr9:38343860-38344043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):63, 18

               
               
               Conread position:203-384
               
               
               Cow position:chr9:6225482-6225299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:204-397
               
               
               Cow position:chr9:35533980-35533786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 80

               
               
               Conread position:205-383
               
               
               Cow position:chr9:44921419-44921239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):66, 80

               
               
               Conread position:207-384
               
               
               Cow position:chr9:1952294-1952116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:237-383
               
               
               Cow position:chr9:20811059-20810913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 93

               
               
               Conread position:244-384
               
               
               Cow position:chr9:42509129-42509267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):23, 43

               
               
               Conread position:1-269
               
               
               Cow position:chrX:47855265-47854998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):42, 145

               
               
               Conread position:3-321
               
               
               Cow position:chrX:17956977-17956661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 154

               
               
               Conread position:3-368
               
               
               Cow position:chrX:11843950-11844325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 63

               
               
               Conread position:3-378
               
               
               Cow position:chrX:27705873-27705496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:4-272
               
               
               Cow position:chrX:42449726-42450000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 186

               
               
               Conread position:4-384
               
               
               Cow position:chrX:27145891-27145526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 143

               
               
               Conread position:5-384
               
               
               Cow position:chrX:42246895-42247282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:260
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):49, 379

               
               
               Conread position:6-384
               
               
               Cow position:chrX:35885453-35885827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:261
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):160, 47

               
               
               Conread position:7-288
               
               
               Cow position:chrX:27668682-27668960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 32

               
               
               Conread position:8-374
               
               
               Cow position:chrX:35590469-35590844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:250
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):20, 110

               
               
               Conread position:8-384
               
               
               Cow position:chrX:42380831-42381199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:9-269
               
               
               Cow position:chrX:20345725-20345470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:10-379
               
               
               Cow position:chrX:27446956-27446604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):145, 12

               
               
               Conread position:10-383
               
               
               Cow position:chrX:20339617-20339985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:12-383
               
               
               Cow position:chrX:17232010-17231635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 38

               
               
               Conread position:13-378
               
               
               Cow position:chrX:46588093-46587729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:248
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):152, 40

               
               
               Conread position:13-383
               
               
               Cow position:chrX:8917675-8917300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):13, 181

               
               
               Conread position:15-302
               
               
               Cow position:chrX:32942813-32943096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):142, 12

               
               
               Conread position:16-384
               
               
               Cow position:chrX:34412121-34411745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:19-368
               
               
               Cow position:chrX:17949229-17949568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:247
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):150, 28

               
               
               Conread position:21-273
               
               
               Cow position:chrX:35285446-35285187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:22-365
               
               
               Cow position:chrX:46793484-46793824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):122, 107

               
               
               Conread position:24-383
               
               
               Cow position:chrX:33001163-33000807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):18, 42

               
               
               Conread position:25-224
               
               
               Cow position:chrX:41215591-41215385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:25-272
               
               
               Cow position:chrX:39179969-39180219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):59, 28

               
               
               Conread position:26-252
               
               
               Cow position:chrX:28068113-28067885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 39

               
               
               Conread position:26-271
               
               
               Cow position:chrX:32877118-32877359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):128, 30

               
               
               Conread position:26-354
               
               
               Cow position:chrX:2674689-2675024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 156

               
               
               Conread position:26-368
               
               
               Cow position:chrX:22822322-22821969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 5

               
               
               Conread position:26-384
               
               
               Cow position:chrX:21064545-21064186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 24

               
               
               Conread position:26-384
               
               
               Cow position:chrX:34454924-34454567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):14, 164

               
               
               Conread position:27-358
               
               
               Cow position:chrX:27460130-27459785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:231
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):8, 31

               
               
               Conread position:27-379
               
               
               Cow position:chrX:161662-161321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):34, 65

               
               
               Conread position:27-379
               
               
               Cow position:chrX:15146937-15147279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:229
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):40, 68

               
               
               Conread position:27-384
               
               
               Cow position:chrX:44962019-44961651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:27-385
               
               
               Cow position:chrX:46072571-46072919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:249
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):237, 25

               
               
               Conread position:28-252
               
               
               Cow position:chrX:44995763-44995533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 155

               
               
               Conread position:28-383
               
               
               Cow position:chrX:22813325-22812968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):149, 126

               
               
               Conread position:28-384
               
               
               Cow position:chrX:38935537-38935188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):60, 25

               
               
               Conread position:29-362
               
               
               Cow position:chrX:33800579-33800247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):117, 42

               
               
               Conread position:29-379
               
               
               Cow position:chrX:33654583-33654933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:29-383
               
               
               Cow position:chrX:12095520-12095870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 19

               
               
               Conread position:29-384
               
               
               Cow position:chrX:8925935-8925604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 32

               
               
               Conread position:30-275
               
               
               Cow position:chrX:38302072-38301820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:30-331
               
               
               Cow position:chrX:34540938-34540635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):139, 19

               
               
               Conread position:30-375
               
               
               Cow position:chrX:8493331-8492993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):25, 60

               
               
               Conread position:30-397
               
               
               Cow position:chrX:34836816-34837163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):235, 42

               
               
               Conread position:31-321
               
               
               Cow position:chrX:12219404-12219118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 146

               
               
               Conread position:31-360
               
               
               Cow position:chrX:47013142-47013477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 49

               
               
               Conread position:31-378
               
               
               Cow position:chrX:47873080-47873427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):118, 26

               
               
               Conread position:31-384
               
               
               Cow position:chrX:5637926-5638262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):233, 19

               
               
               Conread position:31-384
               
               
               Cow position:chrX:30133071-30133419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):233, 19

               
               
               Conread position:31-384
               
               
               Cow position:chrX:31436722-31436381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 20

               
               
               Conread position:31-384
               
               
               Cow position:chrX:46291388-46291041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:252
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):169, 20

               
               
               Conread position:32-252
               
               
               Cow position:chrX:17498580-17498357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):32, 132

               
               
               Conread position:32-261
               
               
               Cow position:chrX:7910818-7911046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):97, 33

               
               
               Conread position:32-272
               
               
               Cow position:chrX:1122288-1122529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):34, 57

               
               
               Conread position:32-289
               
               
               Cow position:chrX:32574575-32574314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):15, 91

               
               
               Conread position:32-296
               
               
               Cow position:chrX:38968150-38967880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 25

               
               
               Conread position:32-300
               
               
               Cow position:chrX:26843012-26843281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):94, 31

               
               
               Conread position:32-332
               
               
               Cow position:chrX:24457288-24457598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):33, 147

               
               
               Conread position:32-340
               
               
               Cow position:chrX:11825389-11825693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):105, 21

               
               
               Conread position:32-347
               
               
               Cow position:chrX:27511671-27511367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):232, 32

               
               
               Conread position:32-384
               
               
               Cow position:chrX:15546135-15545796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:241
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):117, 21

               
               
               Conread position:32-384
               
               
               Cow position:chrX:18111632-18111293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:244
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):114, 18

               
               
               Conread position:32-384
               
               
               Cow position:chrX:38654175-38654527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):31, 187

               
               
               Conread position:33-334
               
               
               Cow position:chrX:6599520-6599831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 40

               
               
               Conread position:33-368
               
               
               Cow position:chrX:48010860-48010520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):14, 32

               
               
               Conread position:33-384
               
               
               Cow position:chrX:23563537-23563890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:33-384
               
               
               Cow position:chrX:34792066-34792405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 55

               
               
               Conread position:33-384
               
               
               Cow position:chrX:42492269-42492612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):111, 17

               
               
               Conread position:34-224
               
               
               Cow position:chrX:1938267-1938077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):139, 162

               
               
               Conread position:34-274
               
               
               Cow position:chrX:25049029-25049270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):128, 19

               
               
               Conread position:34-341
               
               
               Cow position:chrX:35986069-35985764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 52

               
               
               Conread position:34-378
               
               
               Cow position:chrX:47484010-47484356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):120, 30

               
               
               Conread position:34-384
               
               
               Cow position:chrX:22921573-22921219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):143, 19

               
               
               Conread position:34-384
               
               
               Cow position:chrX:33539403-33539068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):216, 15

               
               
               Conread position:34-384
               
               
               Cow position:chrX:34504797-34505144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 113

               
               
               Conread position:35-270
               
               
               Cow position:chrX:20583917-20583682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):7, 60

               
               
               Conread position:35-282
               
               
               Cow position:chrX:35276235-35275990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):126, 19

               
               
               Conread position:35-334
               
               
               Cow position:chrX:27306691-27306405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 29

               
               
               Conread position:35-348
               
               
               Cow position:chrX:20957483-20957187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):119, 15

               
               
               Conread position:35-368
               
               
               Cow position:chrX:41238110-41238432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):224, 18

               
               
               Conread position:36-321
               
               
               Cow position:chrX:44859609-44859897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 141

               
               
               Conread position:36-384
               
               
               Cow position:chrX:31515424-31515072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):35, 42

               
               
               Conread position:37-244
               
               
               Cow position:chrX:11674362-11674155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):107, 27

               
               
               Conread position:37-262
               
               
               Cow position:chrX:32867120-32866900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:174
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:37-272
               
               
               Cow position:chrX:24170470-24170715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 149

               
               
               Conread position:37-342
               
               
               Cow position:chrX:5134724-5134420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):85, 16

               
               
               Conread position:37-350
               
               
               Cow position:chrX:27207045-27206747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):149, 55

               
               
               Conread position:37-377
               
               
               Cow position:chrX:16348302-16348658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:245
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):19, 204

               
               
               Conread position:37-384
               
               
               Cow position:chrX:21642232-21642575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:38-317
               
               
               Cow position:chrX:1397877-1397596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:38-350
               
               
               Cow position:chrX:7648160-7648464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 109

               
               
               Conread position:38-368
               
               
               Cow position:chrX:45598357-45598682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):28, 110

               
               
               Conread position:38-378
               
               
               Cow position:chrX:40183101-40183434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):16, 140

               
               
               Conread position:38-384
               
               
               Cow position:chrX:41878688-41879029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:241
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):109, 26

               
               
               Conread position:39-230
               
               
               Cow position:chrX:23497449-23497634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:39-249
               
               
               Cow position:chrX:8759871-8759661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):105, 25

               
               
               Conread position:39-332
               
               
               Cow position:chrX:16996741-16996443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:39-348
               
               
               Cow position:chrX:30337705-30338007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:225
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):108, 177

               
               
               Conread position:39-378
               
               
               Cow position:chrX:40826503-40826842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 17

               
               
               Conread position:39-384
               
               
               Cow position:chrX:48262852-48262509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:40-378
               
               
               Cow position:chrX:1499901-1499576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:232
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):224, 13

               
               
               Conread position:40-384
               
               
               Cow position:chrX:27175249-27174898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):24, 148

               
               
               Conread position:41-318
               
               
               Cow position:chrX:35269101-35268834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 12

               
               
               Conread position:41-328
               
               
               Cow position:chrX:19394803-19394511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:41-384
               
               
               Cow position:chrX:14973508-14973838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:43-194
               
               
               Cow position:chrX:38726898-38727044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:43-248
               
               
               Cow position:chrX:24425752-24425963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):14, 139

               
               
               Conread position:43-249
               
               
               Cow position:chrX:16555978-16556179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:43-352
               
               
               Cow position:chrX:48004092-48003782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):21, 133

               
               
               Conread position:43-353
               
               
               Cow position:chrX:13147228-13146916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):40, 21

               
               
               Conread position:43-368
               
               
               Cow position:chrX:16763016-16762690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):9, 98

               
               
               Conread position:43-384
               
               
               Cow position:chrX:47279691-47280029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):197, 100

               
               
               Conread position:44-249
               
               
               Cow position:chrX:37751868-37752068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:44-289
               
               
               Cow position:chrX:4467193-4466964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):220, 19

               
               
               Conread position:44-384
               
               
               Cow position:chrX:9201787-9201453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 92

               
               
               Conread position:44-384
               
               
               Cow position:chrX:15006916-15007247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):216, 20

               
               
               Conread position:44-384
               
               
               Cow position:chrX:34314266-34313932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:45-244
               
               
               Cow position:chrX:42760496-42760295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:45-378
               
               
               Cow position:chrX:25035137-25035471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):22, 243

               
               
               Conread position:45-384
               
               
               Cow position:chrX:35224520-35224199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 82

               
               
               Conread position:46-321
               
               
               Cow position:chrX:44590820-44591096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 18

               
               
               Conread position:46-378
               
               
               Cow position:chrX:36976196-36975861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):18, 293

               
               
               Conread position:46-382
               
               
               Cow position:chrX:21986058-21986387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 77

               
               
               Conread position:46-383
               
               
               Cow position:chrX:12979594-12979923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:46-384
               
               
               Cow position:chrX:34315768-34315428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:241
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):65, 7

               
               
               Conread position:47-251
               
               
               Cow position:chrX:17525636-17525830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:47-332
               
               
               Cow position:chrX:22392747-22393031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 104

               
               
               Conread position:47-378
               
               
               Cow position:chrX:36061399-36061067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:47-382
               
               
               Cow position:chrX:43115389-43115057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 27

               
               
               Conread position:47-384
               
               
               Cow position:chrX:38853453-38853101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 191

               
               
               Conread position:48-255
               
               
               Cow position:chrX:18439236-18439028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 16

               
               
               Conread position:48-255
               
               
               Cow position:chrX:46910046-46909847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:48-301
               
               
               Cow position:chrX:12972918-12972668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):142, 79

               
               
               Conread position:48-368
               
               
               Cow position:chrX:46546634-46546954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):44, 16

               
               
               Conread position:48-368
               
               
               Cow position:chrX:48071401-48071080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):106, 16

               
               
               Conread position:48-384
               
               
               Cow position:chrX:20584554-20584227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 81

               
               
               Conread position:48-384
               
               
               Cow position:chrX:27431685-27432011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 5

               
               
               Conread position:48-384
               
               
               Cow position:chrX:27945810-27946156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:48-384
               
               
               Cow position:chrX:28013200-28013545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:230
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):99, 46

               
               
               Conread position:48-384
               
               
               Cow position:chrX:29541989-29542316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 9

               
               
               Conread position:48-384
               
               
               Cow position:chrX:29723993-29723644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:237
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):12, 259

               
               
               Conread position:49-224
               
               
               Cow position:chrX:40556223-40556396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):17, 74

               
               
               Conread position:49-225
               
               
               Cow position:chrX:4750098-4750270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):17, 52

               
               
               Conread position:49-228
               
               
               Cow position:chrX:11602249-11602424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):95, 8

               
               
               Conread position:49-238
               
               
               Cow position:chrX:19000367-19000175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):16, 142

               
               
               Conread position:49-282
               
               
               Cow position:chrX:32208590-32208818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):216, 18

               
               
               Conread position:49-321
               
               
               Cow position:chrX:4289672-4289405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):186, 15

               
               
               Conread position:49-348
               
               
               Cow position:chrX:13122185-13121869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:49-378
               
               
               Cow position:chrX:27442301-27442646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):95, 14

               
               
               Conread position:49-381
               
               
               Cow position:chrX:47345570-47345240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:238
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):17, 241

               
               
               Conread position:49-383
               
               
               Cow position:chrX:20677605-20677274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:225
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):11, 44

               
               
               Conread position:50-205
               
               
               Cow position:chrX:43028470-43028314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):16, 98

               
               
               Conread position:50-219
               
               
               Cow position:chrX:11589129-11589299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:50-220
               
               
               Cow position:chrX:39642391-39642555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:50-230
               
               
               Cow position:chrX:51662-51844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):11, 141

               
               
               Conread position:50-241
               
               
               Cow position:chrX:11529575-11529392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:50-241
               
               
               Cow position:chrX:20666662-20666855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):8, 132

               
               
               Conread position:50-244
               
               
               Cow position:chrX:6389317-6389124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:50-244
               
               
               Cow position:chrX:16763692-16763882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):113, 77

               
               
               Conread position:50-247
               
               
               Cow position:chrX:25930878-25930677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):97, 50

               
               
               Conread position:50-252
               
               
               Cow position:chrX:5487710-5487897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:50-255
               
               
               Cow position:chrX:4092160-4091956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):96, 41

               
               
               Conread position:50-255
               
               
               Cow position:chrX:34398547-34398752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):97, 13

               
               
               Conread position:50-269
               
               
               Cow position:chrX:38587607-38587825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):74, 36

               
               
               Conread position:50-272
               
               
               Cow position:chrX:20340417-20340628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):24, 99

               
               
               Conread position:50-273
               
               
               Cow position:chrX:23089074-23088869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):9, 37

               
               
               Conread position:50-275
               
               
               Cow position:chrX:29467546-29467767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):214, 15

               
               
               Conread position:50-289
               
               
               Cow position:chrX:3806917-3806679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):16, 96

               
               
               Conread position:50-289
               
               
               Cow position:chrX:17293193-17292951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):119, 14

               
               
               Conread position:50-331
               
               
               Cow position:chrX:2523462-2523722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):214, 29

               
               
               Conread position:50-332
               
               
               Cow position:chrX:36367696-36367987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):97, 137

               
               
               Conread position:50-340
               
               
               Cow position:chrX:20887411-20887698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):115, 42

               
               
               Conread position:50-347
               
               
               Cow position:chrX:39353010-39352720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):214, 77

               
               
               Conread position:50-373
               
               
               Cow position:chrX:11614913-11614614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):216, 42

               
               
               Conread position:50-377
               
               
               Cow position:chrX:42855701-42855365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):76, 287

               
               
               Conread position:50-378
               
               
               Cow position:chrX:152143-151814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):77, 147

               
               
               Conread position:50-378
               
               
               Cow position:chrX:4268833-4269152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:225
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):108, 14

               
               
               Conread position:50-378
               
               
               Cow position:chrX:22387006-22387333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):87, 14

               
               
               Conread position:50-379
               
               
               Cow position:chrX:1466402-1466069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 105

               
               
               Conread position:50-381
               
               
               Cow position:chrX:33854990-33855327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 15

               
               
               Conread position:50-384
               
               
               Cow position:chrX:4403556-4403217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:237
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):98, 137

               
               
               Conread position:50-384
               
               
               Cow position:chrX:10865630-10865965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):11, 134

               
               
               Conread position:50-384
               
               
               Cow position:chrX:13177247-13177562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 14

               
               
               Conread position:50-384
               
               
               Cow position:chrX:23513766-23514112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:240
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):27, 197

               
               
               Conread position:50-384
               
               
               Cow position:chrX:24332015-24331681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:231
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):96, 140

               
               
               Conread position:50-384
               
               
               Cow position:chrX:33466860-33466514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):73, 41

               
               
               Conread position:50-384
               
               
               Cow position:chrX:36356342-36356018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:236
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):91, 104

               
               
               Conread position:50-384
               
               
               Cow position:chrX:41871297-41870976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 67

               
               
               Conread position:50-384
               
               
               Cow position:chrX:42927591-42927916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 56

               
               
               Conread position:50-384
               
               
               Cow position:chrX:45110889-45110559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):186, 91

               
               
               Conread position:50-386
               
               
               Cow position:chrX:44055042-44054709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):11, 141

               
               
               Conread position:51-344
               
               
               Cow position:chrX:19469277-19469563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):6, 78

               
               
               Conread position:51-384
               
               
               Cow position:chrX:14955530-14955862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):37, 140

               
               
               Conread position:51-384
               
               
               Cow position:chrX:38094290-38094620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 13

               
               
               Conread position:52-230
               
               
               Cow position:chrX:47979533-47979355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):102, 12

               
               
               Conread position:52-241
               
               
               Cow position:chrX:42875445-42875258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:52-243
               
               
               Cow position:chrX:41166593-41166781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:52-331
               
               
               Cow position:chrX:9361119-9360844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:182
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):207, 18

               
               
               Conread position:52-366
               
               
               Cow position:chrX:25815663-25815985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:218
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):92, 121

               
               
               Conread position:52-378
               
               
               Cow position:chrX:45977160-45976831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 46

               
               
               Conread position:52-384
               
               
               Cow position:chrX:5118263-5118599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 12

               
               
               Conread position:52-384
               
               
               Cow position:chrX:40035206-40035539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 22

               
               
               Conread position:53-216
               
               
               Cow position:chrX:3494815-3494974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:53-220
               
               
               Cow position:chrX:14135910-14135745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:53-235
               
               
               Cow position:chrX:12980-12802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 94

               
               
               Conread position:53-252
               
               
               Cow position:chrX:11454409-11454221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:53-255
               
               
               Cow position:chrX:2314383-2314587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):91, 124

               
               
               Conread position:53-256
               
               
               Cow position:chrX:41858649-41858850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:53-321
               
               
               Cow position:chrX:45391479-45391748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):75, 12

               
               
               Conread position:53-342
               
               
               Cow position:chrX:44339086-44339379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):91, 36

               
               
               Conread position:53-343
               
               
               Cow position:chrX:12290953-12290666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):75, 101

               
               
               Conread position:53-343
               
               
               Cow position:chrX:13913311-13913013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:218
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):8, 100

               
               
               Conread position:53-348
               
               
               Cow position:chrX:25037227-25036926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:195
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):74, 238

               
               
               Conread position:53-348
               
               
               Cow position:chrX:48237052-48236758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 147

               
               
               Conread position:53-353
               
               
               Cow position:chrX:43008845-43008538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):94, 75

               
               
               Conread position:53-368
               
               
               Cow position:chrX:11633917-11633599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 100

               
               
               Conread position:53-376
               
               
               Cow position:chrX:4996825-4996511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):8, 231

               
               
               Conread position:53-378
               
               
               Cow position:chrX:29050477-29050156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 42

               
               
               Conread position:53-380
               
               
               Cow position:chrX:6414267-6413955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 33

               
               
               Conread position:53-382
               
               
               Cow position:chrX:22482454-22482781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 172

               
               
               Conread position:53-383
               
               
               Cow position:chrX:21328149-21327812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):94, 195

               
               
               Conread position:53-383
               
               
               Cow position:chrX:31729672-31729347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):203, 87

               
               
               Conread position:53-383
               
               
               Cow position:chrX:34503161-34502826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 24

               
               
               Conread position:53-383
               
               
               Cow position:chrX:37072622-37072312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:53-384
               
               
               Cow position:chrX:6407778-6407452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):83, 12

               
               
               Conread position:53-384
               
               
               Cow position:chrX:11656313-11655995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 99

               
               
               Conread position:53-384
               
               
               Cow position:chrX:26881327-26881665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 54

               
               
               Conread position:53-384
               
               
               Cow position:chrX:30962641-30962971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):83, 11

               
               
               Conread position:53-384
               
               
               Cow position:chrX:31442604-31442919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:227
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):211, 74

               
               
               Conread position:53-384
               
               
               Cow position:chrX:31948699-31949033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):93, 293

               
               
               Conread position:53-384
               
               
               Cow position:chrX:32821275-32820931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):74, 197

               
               
               Conread position:53-384
               
               
               Cow position:chrX:34377174-34376850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 98

               
               
               Conread position:53-384
               
               
               Cow position:chrX:34441218-34441549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):91, 134

               
               
               Conread position:53-384
               
               
               Cow position:chrX:34565520-34565186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):68, 90

               
               
               Conread position:53-385
               
               
               Cow position:chrX:6544480-6544158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 74

               
               
               Conread position:53-385
               
               
               Cow position:chrX:38964332-38964006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):112, 70

               
               
               Conread position:53-390
               
               
               Cow position:chrX:4296590-4296923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):83, 11

               
               
               Conread position:53-390
               
               
               Cow position:chrX:13191331-13191648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):332, 53

               
               
               Conread position:54-213
               
               
               Cow position:chrX:231792-231944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:54-272
               
               
               Cow position:chrX:4559968-4559753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):90, 170

               
               
               Conread position:54-272
               
               
               Cow position:chrX:19018594-19018817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:54-290
               
               
               Cow position:chrX:2936187-2935953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):210, 91

               
               
               Conread position:54-321
               
               
               Cow position:chrX:28940478-28940212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):144, 219

               
               
               Conread position:54-327
               
               
               Cow position:chrX:24749321-24749047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):99, 170

               
               
               Conread position:54-378
               
               
               Cow position:chrX:40320642-40320317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:215
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):13, 123

               
               
               Conread position:54-384
               
               
               Cow position:chrX:24365588-24365924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 133

               
               
               Conread position:54-384
               
               
               Cow position:chrX:37780877-37781208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:55-241
               
               
               Cow position:chrX:40649135-40648940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:55-252
               
               
               Cow position:chrX:34991594-34991399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:159
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:55-290
               
               
               Cow position:chrX:10251969-10252202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:180
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):188, 88

               
               
               Conread position:55-384
               
               
               Cow position:chrX:14883724-14884055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 93

               
               
               Conread position:55-385
               
               
               Cow position:chrX:38218946-38218613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):130, 90

               
               
               Conread position:56-215
               
               
               Cow position:chrX:29681886-29682039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:56-252
               
               
               Cow position:chrX:27270601-27270410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):139, 38

               
               
               Conread position:56-282
               
               
               Cow position:chrX:39290587-39290363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:56-306
               
               
               Cow position:chrX:40337143-40336892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):92, 131

               
               
               Conread position:56-330
               
               
               Cow position:chrX:11325876-11326143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 84

               
               
               Conread position:56-348
               
               
               Cow position:chrX:296624-296334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):63, 73

               
               
               Conread position:56-373
               
               
               Cow position:chrX:6559224-6559531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:216
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):203, 114

               
               
               Conread position:56-383
               
               
               Cow position:chrX:47186094-47186417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:216
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):104, 121

               
               
               Conread position:56-384
               
               
               Cow position:chrX:9650793-9651122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 91

               
               
               Conread position:56-384
               
               
               Cow position:chrX:29601597-29601927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 0

               
               
               Conread position:56-384
               
               
               Cow position:chrX:46032496-46032819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):100, 38

               
               
               Conread position:57-203
               
               
               Cow position:chrX:37177098-37176958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:57-208
               
               
               Cow position:chrX:31279696-31279845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:57-210
               
               
               Cow position:chrX:17744852-17744700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):142, 95

               
               
               Conread position:57-212
               
               
               Cow position:chrX:35029705-35029851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:57-231
               
               
               Cow position:chrX:42087057-42086884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:57-235
               
               
               Cow position:chrX:27415356-27415528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 51

               
               
               Conread position:57-244
               
               
               Cow position:chrX:46068533-46068716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:57-255
               
               
               Cow position:chrX:48822111-48822310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:57-261
               
               
               Cow position:chrX:23358886-23359085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:57-263
               
               
               Cow position:chrX:46079319-46079109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):81, 34

               
               
               Conread position:57-272
               
               
               Cow position:chrX:32910328-32910118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):207, 80

               
               
               Conread position:57-298
               
               
               Cow position:chrX:42894153-42893914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):194, 88

               
               
               Conread position:57-348
               
               
               Cow position:chrX:4109416-4109129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):89, 204

               
               
               Conread position:57-348
               
               
               Cow position:chrX:4152813-4153096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 64

               
               
               Conread position:57-354
               
               
               Cow position:chrX:12437052-12437337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):209, 64

               
               
               Conread position:57-360
               
               
               Cow position:chrX:1087917-1088209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):200, 70

               
               
               Conread position:57-366
               
               
               Cow position:chrX:36866404-36866092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):91, 125

               
               
               Conread position:57-384
               
               
               Cow position:chrX:7351532-7351202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):70, 34

               
               
               Conread position:57-384
               
               
               Cow position:chrX:29230238-29229913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 208

               
               
               Conread position:57-384
               
               
               Cow position:chrX:40685098-40685428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 0

               
               
               Conread position:57-385
               
               
               Cow position:chrX:22075026-22074702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 32

               
               
               Conread position:58-237
               
               
               Cow position:chrX:1101780-1101607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:58-238
               
               
               Cow position:chrX:6634575-6634393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 129

               
               
               Conread position:58-238
               
               
               Cow position:chrX:27416325-27416142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):74, 131

               
               
               Conread position:58-245
               
               
               Cow position:chrX:23471638-23471824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:58-250
               
               
               Cow position:chrX:6480365-6480559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):79, 183

               
               
               Conread position:58-274
               
               
               Cow position:chrX:4327952-4328171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 132

               
               
               Conread position:58-319
               
               
               Cow position:chrX:41941853-41941594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):91, 60

               
               
               Conread position:58-321
               
               
               Cow position:chrX:48532544-48532280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):76, 92

               
               
               Conread position:58-332
               
               
               Cow position:chrX:36391958-36392233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:196
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):119, 68

               
               
               Conread position:58-344
               
               
               Cow position:chrX:40108283-40108573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):69, 222

               
               
               Conread position:58-382
               
               
               Cow position:chrX:38560780-38560462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:232
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):134, 70

               
               
               Conread position:58-384
               
               
               Cow position:chrX:5017186-5017511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):72, 34

               
               
               Conread position:58-384
               
               
               Cow position:chrX:41027390-41027060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):86, 119

               
               
               Conread position:58-389
               
               
               Cow position:chrX:31250620-31250282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:232
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:58-390
               
               
               Cow position:chrX:9251933-9252262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 95

               
               
               Conread position:59-222
               
               
               Cow position:chrX:25826910-25827070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:59-224
               
               
               Cow position:chrX:16801038-16801200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):84, 35

               
               
               Conread position:59-232
               
               
               Cow position:chrX:27170967-27170794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 56

               
               
               Conread position:59-247
               
               
               Cow position:chrX:19203116-19203306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):97, 124

               
               
               Conread position:59-247
               
               
               Cow position:chrX:41454724-41454914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):85, 119

               
               
               Conread position:59-250
               
               
               Cow position:chrX:10415023-10415216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):90, 130

               
               
               Conread position:59-250
               
               
               Cow position:chrX:47100365-47100561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):85, 133

               
               
               Conread position:59-296
               
               
               Cow position:chrX:45699751-45699979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):205, 84

               
               
               Conread position:59-321
               
               
               Cow position:chrX:43150660-43150386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):68, 110

               
               
               Conread position:59-361
               
               
               Cow position:chrX:41790198-41790518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):85, 124

               
               
               Conread position:59-366
               
               
               Cow position:chrX:38549676-38549368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 219

               
               
               Conread position:59-368
               
               
               Cow position:chrX:27261419-27261107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:217
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):163, 30

               
               
               Conread position:59-368
               
               
               Cow position:chrX:34554953-34554645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):90, 131

               
               
               Conread position:59-378
               
               
               Cow position:chrX:4632625-4632940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):88, 224

               
               
               Conread position:59-378
               
               
               Cow position:chrX:18204237-18204552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:59-378
               
               
               Cow position:chrX:25207632-25207932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):100, 79

               
               
               Conread position:59-378
               
               
               Cow position:chrX:36283569-36283261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):87, 116

               
               
               Conread position:59-384
               
               
               Cow position:chrX:4399347-4399032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):184, 142

               
               
               Conread position:59-384
               
               
               Cow position:chrX:7722203-7721892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):210, 32

               
               
               Conread position:59-384
               
               
               Cow position:chrX:15231430-15231755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):97, 130

               
               
               Conread position:59-384
               
               
               Cow position:chrX:21593520-21593190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:59-384
               
               
               Cow position:chrX:45502364-45502055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:234
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):191, 32

               
               
               Conread position:60-224
               
               
               Cow position:chrX:41011118-41010961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):111, 34

               
               
               Conread position:60-246
               
               
               Cow position:chrX:31983350-31983544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:60-247
               
               
               Cow position:chrX:35409980-35409792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):86, 118

               
               
               Conread position:60-257
               
               
               Cow position:chrX:40046335-40046545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 175

               
               
               Conread position:60-257
               
               
               Cow position:chrX:41453527-41453332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:60-258
               
               
               Cow position:chrX:8642273-8642075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 127

               
               
               Conread position:60-260
               
               
               Cow position:chrX:5026479-5026283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:60-270
               
               
               Cow position:chrX:31480194-31479987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):204, 96

               
               
               Conread position:60-271
               
               
               Cow position:chrX:11762783-11762986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):203, 67

               
               
               Conread position:60-272
               
               
               Cow position:chrX:17524155-17524370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):86, 120

               
               
               Conread position:60-274
               
               
               Cow position:chrX:23335747-23335960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 111

               
               
               Conread position:60-282
               
               
               Cow position:chrX:16984863-16984645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):204, 81

               
               
               Conread position:60-282
               
               
               Cow position:chrX:42480055-42479837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):35, 26

               
               
               Conread position:60-304
               
               
               Cow position:chrX:16836066-16836304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):204, 70

               
               
               Conread position:60-357
               
               
               Cow position:chrX:23562101-23561792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):82, 132

               
               
               Conread position:60-366
               
               
               Cow position:chrX:22115086-22115396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 234

               
               
               Conread position:60-366
               
               
               Cow position:chrX:22284067-22283753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):84, 127

               
               
               Conread position:60-373
               
               
               Cow position:chrX:40680843-40680525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:217
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):86, 227

               
               
               Conread position:60-378
               
               
               Cow position:chrX:918501-918818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):170, 23

               
               
               Conread position:60-384
               
               
               Cow position:chrX:8869176-8869499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 101

               
               
               Conread position:60-384
               
               
               Cow position:chrX:32420438-32420122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):104, 11

               
               
               Conread position:60-384
               
               
               Cow position:chrX:37489957-37489629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 126

               
               
               Conread position:61-214
               
               
               Cow position:chrX:13784985-13785149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:61-320
               
               
               Cow position:chrX:35431014-35431277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):83, 112

               
               
               Conread position:61-325
               
               
               Cow position:chrX:48558973-48558709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 47

               
               
               Conread position:61-381
               
               
               Cow position:chrX:20168782-20168464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):86, 31

               
               
               Conread position:61-383
               
               
               Cow position:chrX:26493234-26492910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):88, 122

               
               
               Conread position:61-384
               
               
               Cow position:chrX:13924088-13923774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):110, 84

               
               
               Conread position:62-297
               
               
               Cow position:chrX:42836407-42836170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):84, 114

               
               
               Conread position:62-376
               
               
               Cow position:chrX:31489747-31489431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):85, 228

               
               
               Conread position:63-213
               
               
               Cow position:chrX:43059031-43059177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:63-332
               
               
               Cow position:chrX:4645689-4645957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):122, 116

               
               
               Conread position:63-382
               
               
               Cow position:chrX:41526309-41526616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):201, 39

               
               
               Conread position:63-384
               
               
               Cow position:chrX:10516479-10516159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):81, 287

               
               
               Conread position:64-217
               
               
               Cow position:chrX:4486800-4486954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:64-247
               
               
               Cow position:chrX:11653991-11653811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:64-257
               
               
               Cow position:chrX:8327129-8326934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:64-262
               
               
               Cow position:chrX:35382818-35383011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:64-270
               
               
               Cow position:chrX:27074827-27075035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:64-323
               
               
               Cow position:chrX:38642466-38642213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):122, 37

               
               
               Conread position:64-367
               
               
               Cow position:chrX:39220312-39220000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):32, 234

               
               
               Conread position:64-383
               
               
               Cow position:chrX:17795203-17794887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 14

               
               
               Conread position:64-384
               
               
               Cow position:chrX:7278130-7277822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):200, 31

               
               
               Conread position:64-385
               
               
               Cow position:chrX:44397235-44396921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):62, 101

               
               
               Conread position:64-386
               
               
               Cow position:chrX:46532266-46532599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):95, 318

               
               
               Conread position:66-384
               
               
               Cow position:chrX:1615836-1616141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):203, 61

               
               
               Conread position:68-217
               
               
               Cow position:chrX:25420544-25420401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 61

               
               
               Conread position:68-265
               
               
               Cow position:chrX:44991197-44991391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):156, 84

               
               
               Conread position:69-244
               
               
               Cow position:chrX:35681786-35681610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):85, 107

               
               
               Conread position:69-303
               
               
               Cow position:chrX:42282796-42282562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 130

               
               
               Conread position:69-378
               
               
               Cow position:chrX:20152067-20151759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):195, 52

               
               
               Conread position:69-385
               
               
               Cow position:chrX:45875609-45875293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):87, 25

               
               
               Conread position:71-283
               
               
               Cow position:chrX:30840758-30840543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):169, 70

               
               
               Conread position:72-327
               
               
               Cow position:chrX:47061602-47061354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):114, 15

               
               
               Conread position:72-345
               
               
               Cow position:chrX:1360298-1360028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):110, 70

               
               
               Conread position:72-368
               
               
               Cow position:chrX:13868920-13868622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 96

               
               
               Conread position:72-368
               
               
               Cow position:chrX:44744606-44744895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 104

               
               
               Conread position:72-378
               
               
               Cow position:chrX:27228345-27228037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):78, 234

               
               
               Conread position:72-383
               
               
               Cow position:chrX:9634976-9635277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:72-384
               
               
               Cow position:chrX:842371-842059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:72-384
               
               
               Cow position:chrX:8731310-8730989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):72, 114

               
               
               Conread position:72-384
               
               
               Cow position:chrX:10831265-10831590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):64, 106

               
               
               Conread position:72-480
               
               
               Cow position:chrX:41192905-41192520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:273
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):192, 42

               
               
               Conread position:73-273
               
               
               Cow position:chrX:30824200-30824000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):177, 72

               
               
               Conread position:73-346
               
               
               Cow position:chrX:4278904-4279176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):31, 21

               
               
               Conread position:73-384
               
               
               Cow position:chrX:4768943-4768647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):191, 65

               
               
               Conread position:73-384
               
               
               Cow position:chrX:29544671-29544975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):93, 22

               
               
               Conread position:73-394
               
               
               Cow position:chrX:34238938-34238605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:74-384
               
               
               Cow position:chrX:34544000-34543689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:222
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):28, 252

               
               
               Conread position:74-384
               
               
               Cow position:chrX:35273586-35273259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):69, 161

               
               
               Conread position:74-384
               
               
               Cow position:chrX:47344513-47344198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):94, 191

               
               
               Conread position:75-255
               
               
               Cow position:chrX:47755831-47756008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:76-384
               
               
               Cow position:chrX:12309173-12309483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):70, 226

               
               
               Conread position:79-382
               
               
               Cow position:chrX:35543093-35542800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 73

               
               
               Conread position:79-384
               
               
               Cow position:chrX:31294360-31294654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):63, 202

               
               
               Conread position:80-384
               
               
               Cow position:chrX:47165676-47165983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 97

               
               
               Conread position:83-352
               
               
               Cow position:chrX:19965190-19965467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):71, 114

               
               
               Conread position:83-378
               
               
               Cow position:chrX:4991819-4992103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):176, 43

               
               
               Conread position:86-270
               
               
               Cow position:chrX:47079830-47079643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:86-383
               
               
               Cow position:chrX:34222915-34222619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):68, 58

               
               
               Conread position:86-384
               
               
               Cow position:chrX:1055179-1055490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):68, 89

               
               
               Conread position:88-414
               
               
               Cow position:chrX:40283323-40282995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):61, 102

               
               
               Conread position:89-305
               
               
               Cow position:chrX:24633893-24633665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:89-345
               
               
               Cow position:chrX:14275549-14275804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):175, 52

               
               
               Conread position:89-384
               
               
               Cow position:chrX:21672761-21672458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):60, 106

               
               
               Conread position:90-344
               
               
               Cow position:chrX:169343-169602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):49, 68

               
               
               Conread position:90-384
               
               
               Cow position:chrX:13647586-13647882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 196

               
               
               Conread position:91-384
               
               
               Cow position:chrX:5919689-5919399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):101, 55

               
               
               Conread position:92-273
               
               
               Cow position:chrX:41862556-41862377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):172, 54

               
               
               Conread position:92-384
               
               
               Cow position:chrX:27302073-27301773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:204
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):55, 86

               
               
               Conread position:95-256
               
               
               Cow position:chrX:29687982-29688144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:95-384
               
               
               Cow position:chrX:24287740-24288021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 165

               
               
               Conread position:95-384
               
               
               Cow position:chrX:34662653-34662947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 81

               
               
               Conread position:97-365
               
               
               Cow position:chrX:4515879-4515606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:203
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):143, 64

               
               
               Conread position:97-383
               
               
               Cow position:chrX:34532709-34532425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 59

               
               
               Conread position:98-343
               
               
               Cow position:chrX:28865814-28866061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 137

               
               
               Conread position:98-384
               
               
               Cow position:chrX:31252598-31252321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):49, 100

               
               
               Conread position:108-384
               
               
               Cow position:chrX:32170712-32170985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):58, 38

               
               
               Conread position:110-378
               
               
               Cow position:chrX:23113461-23113186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):154, 41

               
               
               Conread position:127-364
               
               
               Cow position:chrX:4746086-4746318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 54

               
               
               Conread position:128-257
               
               
               Cow position:chrX:41939981-41939853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:128-268
               
               
               Cow position:chrX:34508701-34508563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:128-327
               
               
               Cow position:chrX:40531884-40532084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):136, 160

               
               
               Conread position:128-343
               
               
               Cow position:chrX:32977927-32978133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):135, 33

               
               
               Conread position:128-348
               
               
               Cow position:chrX:15820753-15820536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 56

               
               
               Conread position:128-354
               
               
               Cow position:chrX:32623729-32623501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):134, 32

               
               
               Conread position:128-366
               
               
               Cow position:chrX:33640132-33639896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):162, 13

               
               
               Conread position:128-376
               
               
               Cow position:chrX:45670381-45670136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):91, 150

               
               
               Conread position:128-378
               
               
               Cow position:chrX:5872474-5872230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):136, 24

               
               
               Conread position:128-384
               
               
               Cow position:chrX:8797406-8797155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):136, 31

               
               
               Conread position:128-384
               
               
               Cow position:chrX:27771811-27772058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):143, 19

               
               
               Conread position:128-384
               
               
               Cow position:chrX:33493936-33493681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):27, 94

               
               
               Conread position:128-384
               
               
               Cow position:chrX:41884255-41884511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):136, 19

               
               
               Conread position:128-384
               
               
               Cow position:chrX:42235368-42235625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):136, 19

               
               
               Conread position:129-344
               
               
               Cow position:chrX:31626821-31627038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):135, 22

               
               
               Conread position:129-366
               
               
               Cow position:chrX:23562788-23562556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:129-383
               
               
               Cow position:chrX:878224-878473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:129-384
               
               
               Cow position:chrX:36068175-36067918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:190
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):26, 245

               
               
               Conread position:129-384
               
               
               Cow position:chrX:38006612-38006861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):9, 31

               
               
               Conread position:129-384
               
               
               Cow position:chrX:39415212-39415464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):135, 148

               
               
               Conread position:129-386
               
               
               Cow position:chrX:37129429-37129170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:130-384
               
               
               Cow position:chrX:6690107-6690354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):134, 14

               
               
               Conread position:130-403
               
               
               Cow position:chrX:29549391-29549666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:131-282
               
               
               Cow position:chrX:29501730-29501877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:131-314
               
               
               Cow position:chrX:36848423-36848607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):133, 37

               
               
               Conread position:131-344
               
               
               Cow position:chrX:23092027-23091811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):80, 185

               
               
               Conread position:131-348
               
               
               Cow position:chrX:19097066-19097283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):109, 16

               
               
               Conread position:131-368
               
               
               Cow position:chrX:18272901-18273139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):35, 91

               
               
               Conread position:131-377
               
               
               Cow position:chrX:7710382-7710628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 155

               
               
               Conread position:131-382
               
               
               Cow position:chrX:40480711-40480964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):55, 97

               
               
               Conread position:131-383
               
               
               Cow position:chrX:14599688-14599437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):133, 55

               
               
               Conread position:131-384
               
               
               Cow position:chrX:616102-616359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 151

               
               
               Conread position:131-384
               
               
               Cow position:chrX:618852-619101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):13, 59

               
               
               Conread position:131-384
               
               
               Cow position:chrX:9365520-9365772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):137, 154

               
               
               Conread position:131-384
               
               
               Cow position:chrX:11084909-11085154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):135, 19

               
               
               Conread position:131-384
               
               
               Cow position:chrX:13382481-13382232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 87

               
               
               Conread position:131-384
               
               
               Cow position:chrX:17726130-17725877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):133, 25

               
               
               Conread position:131-384
               
               
               Cow position:chrX:17888267-17888511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):172, 101

               
               
               Conread position:131-384
               
               
               Cow position:chrX:18694774-18695020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):27, 92

               
               
               Conread position:131-384
               
               
               Cow position:chrX:27119848-27119602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):128, 35

               
               
               Conread position:131-384
               
               
               Cow position:chrX:27393870-27394116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):133, 152

               
               
               Conread position:131-384
               
               
               Cow position:chrX:27516674-27516431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):248, 55

               
               
               Conread position:131-384
               
               
               Cow position:chrX:28878018-28878268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):133, 156

               
               
               Conread position:131-384
               
               
               Cow position:chrX:29680106-29680357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:131-384
               
               
               Cow position:chrX:34402162-34401901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:131-384
               
               
               Cow position:chrX:40269648-40269391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:131-384
               
               
               Cow position:chrX:43730068-43730315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):133, 119

               
               
               Conread position:131-397
               
               
               Cow position:chrX:11717627-11717902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:132-295
               
               
               Cow position:chrX:42160776-42160618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):137, 15

               
               
               Conread position:132-369
               
               
               Cow position:chrX:5135367-5135607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):69, 20

               
               
               Conread position:132-374
               
               
               Cow position:chrX:11317811-11318054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):24, 58

               
               
               Conread position:132-383
               
               
               Cow position:chrX:40557523-40557777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:132-384
               
               
               Cow position:chrX:4043714-4043949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:132-384
               
               
               Cow position:chrX:31312182-31311932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 20

               
               
               Conread position:133-378
               
               
               Cow position:chrX:46433642-46433400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):33, 7

               
               
               Conread position:133-383
               
               
               Cow position:chrX:38728886-38728641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):113, 19

               
               
               Conread position:133-385
               
               
               Cow position:chrX:24424249-24424486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:134-384
               
               
               Cow position:chrX:5679421-5679663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):132, 18

               
               
               Conread position:134-384
               
               
               Cow position:chrX:30543134-30543384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):130, 13

               
               
               Conread position:136-384
               
               
               Cow position:chrX:15815236-15814990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:144-384
               
               
               Cow position:chrX:48044373-48044611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):120, 28

               
               
               Conread position:146-329
               
               
               Cow position:chrX:29553426-29553243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):118, 139

               
               
               Conread position:146-384
               
               
               Cow position:chrX:6265458-6265695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):159, 77

               
               
               Conread position:146-384
               
               
               Cow position:chrX:6278357-6278599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):113, 137

               
               
               Conread position:146-384
               
               
               Cow position:chrX:7695889-7695651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):118, 15

               
               
               Conread position:146-384
               
               
               Cow position:chrX:29289719-29289483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):20, 42

               
               
               Conread position:147-352
               
               
               Cow position:chrX:46429679-46429885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:164
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):117, 190

               
               
               Conread position:147-384
               
               
               Cow position:chrX:1503467-1503241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:147-384
               
               
               Cow position:chrX:17662458-17662690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 28

               
               
               Conread position:147-384
               
               
               Cow position:chrX:37986365-37986136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):150, 65

               
               
               Conread position:147-397
               
               
               Cow position:chrX:7646396-7646148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 147

               
               
               Conread position:148-308
               
               
               Cow position:chrX:4615872-4616030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):116, 26

               
               
               Conread position:148-332
               
               
               Cow position:chrX:19943097-19943282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):116, 61

               
               
               Conread position:148-367
               
               
               Cow position:chrX:36514753-36514974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):73, 142

               
               
               Conread position:148-383
               
               
               Cow position:chrX:11073052-11073286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):116, 177

               
               
               Conread position:148-384
               
               
               Cow position:chrX:37119731-37119498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):116, 13

               
               
               Conread position:148-384
               
               
               Cow position:chrX:39558210-39558447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):116, 53

               
               
               Conread position:148-384
               
               
               Cow position:chrX:45414164-45414397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):16, 138

               
               
               Conread position:148-384
               
               
               Cow position:chrX:45846241-45846002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:179
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):7, 103

               
               
               Conread position:151-266
               
               
               Cow position:chrX:4617262-4617377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:151-384
               
               
               Cow position:chrX:37910580-37910349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):113, 12

               
               
               Conread position:151-384
               
               
               Cow position:chrX:43568055-43567825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):113, 134

               
               
               Conread position:151-397
               
               
               Cow position:chrX:42469805-42470049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):87, 184

               
               
               Conread position:152-384
               
               
               Cow position:chrX:7162191-7161963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):112, 73

               
               
               Conread position:152-384
               
               
               Cow position:chrX:19273572-19273819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:152-384
               
               
               Cow position:chrX:37232542-37232316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:179
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):112, 121

               
               
               Conread position:153-377
               
               
               Cow position:chrX:42171163-42171386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):113, 6

               
               
               Conread position:153-383
               
               
               Cow position:chrX:29121181-29120950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):111, 141

               
               
               Conread position:154-384
               
               
               Cow position:chrX:11938801-11939024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:155-352
               
               
               Cow position:chrX:12082192-12082390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):109, 72

               
               
               Conread position:155-384
               
               
               Cow position:chrX:10411852-10412082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 136

               
               
               Conread position:155-384
               
               
               Cow position:chrX:32431756-32431527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):109, 202

               
               
               Conread position:156-384
               
               
               Cow position:chrX:917237-917461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):125, 144

               
               
               Conread position:156-384
               
               
               Cow position:chrX:37574971-37574754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):108, 137

               
               
               Conread position:161-325
               
               
               Cow position:chrX:29585245-29585082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):103, 124

               
               
               Conread position:161-340
               
               
               Cow position:chrX:25328490-25328659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):103, 93

               
               
               Conread position:163-384
               
               
               Cow position:chrX:44837098-44836889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):119, 7

               
               
               Conread position:167-340
               
               
               Cow position:chrX:47362503-47362676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):98, 169

               
               
               Conread position:174-351
               
               
               Cow position:chrX:10959282-10959461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:174-368
               
               
               Cow position:chrX:38936813-38936616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:174-384
               
               
               Cow position:chrX:7572018-7571807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):90, 204

               
               
               Conread position:174-384
               
               
               Cow position:chrX:21566520-21566305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:179-384
               
               
               Cow position:chrX:26625563-26625767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):85, 171

               
               
               Conread position:186-379
               
               
               Cow position:chrX:27685350-27685156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:187-379
               
               
               Cow position:chrX:43779747-43779938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):77, 99

               
               
               Conread position:187-384
               
               
               Cow position:chrX:11856530-11856331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):77, 149

               
               
               Conread position:190-384
               
               
               Cow position:chrX:27680495-27680302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):74, 155

               
               
               Conread position:191-327
               
               
               Cow position:chrX:44095356-44095218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 92

               
               
               Conread position:194-366
               
               
               Cow position:chrX:44656864-44657040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:194-368
               
               
               Cow position:chrX:40809786-40809608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:194-373
               
               
               Cow position:chrX:2467977-2467800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 67

               
               
               Conread position:194-378
               
               
               Cow position:chrX:45403732-45403918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 67

               
               
               Conread position:194-384
               
               
               Cow position:chrX:46722641-46722834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):60, 113

               
               
               Conread position:206-384
               
               
               Cow position:chrX:19003374-19003203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):58, 21

               
               
               Conread position:213-384
               
               
               Cow position:chrX:13785286-13785460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:217-384
               
               
               Cow position:chrX:26875811-26875980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:222-384
               
               
               Cow position:chrX:12018357-12018193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 76

               
               
               Conread position:223-384
               
               
               Cow position:chrX:34192734-34192576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):82, 48

               
               
               Conread position:232-397
               
               
               Cow position:chrX:34991091-34990927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:233-384
               
               
               Cow position:chrX:28845887-28845733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):31, 52

               
               
               Conread position:237-382
               
               
               Cow position:chrX:19015487-19015343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 91